RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7885
(79 letters)
>gnl|CDD|204502 pfam10509, GalKase_gal_bdg, Galactokinase galactose-binding
signature. This is the highly conserved galactokinase
signature sequence which appears to be present in all
galactokinases irrespective of how many other ATP
binding sites, etc that they carry. The function of
this domain appears to be to bind galactose, and the
domain is normally at the N-terminus of the enzymes,
EC:2.7.1.6. This domain is associated with the families
GHMP_kinases_C, pfam08544 and GHMP_kinases_N,
pfam00288.
Length = 52
Score = 61.7 bits (151), Expect = 5e-15
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN 53
S PGRVNLIGEH DY V P A+ + VA
Sbjct: 16 ASAPGRVNLIGEHTDYNGGFVLPAAINLDTYVAVSKR 52
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 66.3 bits (162), Expect = 1e-14
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAF-KCNENGDLNLYNIDDQKY 68
PGRVNLIGEHIDY YSV PMA+ Q+ +VA + + L + N++D KY
Sbjct: 54 PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVND-KY 102
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 58.1 bits (141), Expect = 1e-11
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 7 LIGEHIDYC----RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYN 62
L EH Y PGRVNLIGEH DY V P A+ VA ++G + LY+
Sbjct: 12 LFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYS 71
Query: 63 ID 64
+
Sbjct: 72 AN 73
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 53.3 bits (128), Expect = 4e-10
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID-DQKYDDY 71
PGRVNLIGEH DY SV P A++ L A ++ ++ +Y + D K+ +
Sbjct: 23 PGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAER 75
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 46.4 bits (110), Expect = 1e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAF 50
RY+ PGR+NLIGEH DY P+AL Q +V F
Sbjct: 4 RYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTF 38
Score = 36.0 bits (83), Expect = 7e-04
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 2 PGRVNLIGEHIDY 14
PGR+NLIGEH DY
Sbjct: 8 PGRINLIGEHTDY 20
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 43.3 bits (102), Expect = 1e-06
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQ--NILV 48
PGRVN IGEH+DY VCP A+ + +ILV
Sbjct: 43 PGRVNFIGEHVDYMGGYVCPAAVLEGCHILV 73
Score = 37.5 bits (87), Expect = 2e-04
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 2 PGRVNLIGEHIDYCR-YSVPGRVNLIGEHI 30
PGRVN IGEH+DY Y P V L G HI
Sbjct: 43 PGRVNFIGEHVDYMGGYVCPAAV-LEGCHI 71
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 43.4 bits (103), Expect = 2e-06
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
PGRVNLIGEH DY V P A++ +++ ++ + + D
Sbjct: 26 PGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAAD 70
Score = 38.0 bits (89), Expect = 1e-04
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 2 PGRVNLIGEHIDY 14
PGRVNLIGEH DY
Sbjct: 26 PGRVNLIGEHTDY 38
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 42.7 bits (101), Expect = 3e-06
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY 61
+ PGRVNLIGEH DY V P A+ N+ + ++ Y
Sbjct: 2 KVKSPGRVNLIGEHTDYNDGYVLPFAI--NLYTFLEIEKSEKFIFY 45
Score = 36.9 bits (86), Expect = 3e-04
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 2 PGRVNLIGEHIDYCR-YSVPGRVNL-----IGEHIDYCRYS 36
PGRVNLIGEH DY Y +P +NL I + + YS
Sbjct: 6 PGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKSEKFIFYS 46
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 39.8 bits (94), Expect = 2e-05
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY------------NIDDQK 67
PGR+NLIGEH DY V P A+ A + ++ + LY ++DD
Sbjct: 25 PGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLDDLS 84
Query: 68 YDDYHS 73
+D
Sbjct: 85 FDKEDD 90
Score = 39.1 bits (92), Expect = 5e-05
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 2 PGRVNLIGEHIDY 14
PGR+NLIGEH DY
Sbjct: 25 PGRINLIGEHTDY 37
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 26.3 bits (58), Expect = 1.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAF 50
P R+ +G HID+ +V M + + IL+ F
Sbjct: 36 PYRICPLGAHIDHQGGTVSAMTINKGILLGF 66
>gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.
Length = 1112
Score = 25.8 bits (58), Expect = 2.7
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 40 MALEQNILVAF 50
+AL QN+LVAF
Sbjct: 713 LALGQNVLVAF 723
>gnl|CDD|183097 PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.
Length = 799
Score = 25.9 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 41 ALEQNILVAFKCNENGDLNLYN 62
ALEQN++ A NEN ++ +N
Sbjct: 17 ALEQNMMGAVLINENDEVLFFN 38
>gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD
subunit [Transcription].
Length = 1060
Score = 24.8 bits (55), Expect = 5.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 40 MALEQNILVAFKCNENGDLNLYNIDD 65
+AL QN LVAF NG YN +D
Sbjct: 671 LALGQNALVAFMP-WNG----YNYED 691
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.144 0.459
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,994,808
Number of extensions: 303459
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 21
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)