RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7885
         (79 letters)



>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 225

 Score = 54.9 bits (131), Expect = 2e-11
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
          S PG+V L GEH          +AL     +  +   NG ++L   +
Sbjct: 9  SAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPN 55


>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
          [TaxId: 1358]}
          Length = 205

 Score = 52.2 bits (124), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
          +  PGR+NLIGEH DY    V P ++        +  E+  + LY+ +  K       +D
Sbjct: 23 FFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLD 82


>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 215

 Score = 52.2 bits (124), Expect = 2e-10
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDY 71
           S PGRVNLIGEH DY +  V PMALE   ++     ++G ++L    +   +  
Sbjct: 31 VSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQ 85


>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 176

 Score = 51.4 bits (122), Expect = 3e-10
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHS 73
          PGRVNLIGEH DY    V PMA++   ++  +  +   L   + +++K     +
Sbjct: 5  PGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDKVQLYSEHFNEEKTFTLDN 58


>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 180

 Score = 44.8 bits (105), Expect = 6e-08
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENG 56
            P +V L GEH     Y    MA++    +  K  +  
Sbjct: 9  ETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQED 47



 Score = 34.1 bits (77), Expect = 5e-04
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 2  PGRVNLIGEHIDYCRYSV 19
          P +V L GEH     Y  
Sbjct: 11 PSKVILFGEHAVVYGYRA 28


>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
          {Streptococcus pneumoniae r6 [TaxId: 171101]}
          Length = 194

 Score = 34.5 bits (78), Expect = 4e-04
 Identities = 5/63 (7%), Positives = 16/63 (25%), Gaps = 1/63 (1%)

Query: 18 SVPGRVNLIGEH-IDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
             G++   GE+ I           +   +      +++  +     D       +    
Sbjct: 5  KTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYS 64

Query: 77 TFR 79
            +
Sbjct: 65 LIQ 67


>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
           ectodomain, protease-like domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 294

 Score = 24.8 bits (53), Expect = 1.2
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 58  LNLYNIDDQKYDDYHSTVDTF 78
           ++    +D  Y    +T+DT+
Sbjct: 239 VSFCFCEDTDYPYLGTTMDTY 259


>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1207

 Score = 24.9 bits (53), Expect = 1.5
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 3/53 (5%)

Query: 26  IGEHIDYCRYSVCPMALEQNILVAF---KCNENGDLNLYNIDDQKYDDYHSTV 75
           +G            +   QN +VA          D  + N        + S  
Sbjct: 786 LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLF 838


>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole
          ribonucleotide synthetase PurK (AIRC), C-domain
          {Escherichia coli [TaxId: 562]}
          Length = 79

 Score = 23.2 bits (50), Expect = 2.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 5  VNLIGEHIDYCRYSVPG 21
          +NLIG  ++Y    +P 
Sbjct: 7  INLIGSDVNYDWLKLPL 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,077
Number of extensions: 12683
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 10
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)