Query psy7886
Match_columns 115
No_of_seqs 134 out of 732
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 21:18:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 99.9 1.4E-26 3.1E-31 191.9 8.1 75 1-76 168-243 (390)
2 PTZ00290 galactokinase; Provis 99.9 1.4E-24 3E-29 183.8 8.2 78 1-78 207-290 (468)
3 PLN02865 galactokinase 99.9 1.4E-23 3E-28 175.8 8.8 81 1-81 184-271 (423)
4 PLN02521 galactokinase 99.9 1.2E-21 2.6E-26 166.8 9.0 81 1-81 201-283 (497)
5 PRK05322 galactokinase; Provis 99.8 4.1E-20 8.9E-25 152.3 8.9 79 1-80 165-244 (387)
6 PRK05101 galactokinase; Provis 99.7 4.3E-18 9.3E-23 140.0 8.5 77 1-78 165-241 (382)
7 TIGR00131 gal_kin galactokinas 99.7 4.4E-18 9.6E-23 139.4 8.4 76 1-77 163-239 (386)
8 PRK00555 galactokinase; Provis 99.7 3.1E-17 6.6E-22 134.4 8.4 75 1-76 144-221 (363)
9 KOG0631|consensus 99.5 3.3E-15 7.1E-20 126.9 2.9 109 1-111 197-310 (489)
10 PRK03817 galactokinase; Provis 99.4 3.3E-13 7.2E-18 109.2 7.1 77 1-78 139-215 (351)
11 PLN02677 mevalonate kinase 97.1 0.00074 1.6E-08 56.6 4.4 47 2-54 197-243 (387)
12 TIGR00549 mevalon_kin mevalona 96.2 0.011 2.4E-07 45.7 5.2 49 1-54 131-179 (273)
13 TIGR01220 Pmev_kin_Gr_pos phos 95.8 0.0056 1.2E-07 50.3 2.1 47 7-53 162-228 (358)
14 PTZ00298 mevalonate kinase; Pr 94.7 0.092 2E-06 42.4 6.0 50 1-54 147-198 (328)
15 PRK03926 mevalonate kinase; Pr 89.3 0.74 1.6E-05 36.2 4.7 44 2-54 129-172 (302)
16 PRK13412 fkp bifunctional fuco 82.1 1.9 4.1E-05 40.6 4.2 50 2-54 779-839 (974)
17 cd00280 TRFH Telomeric Repeat 69.5 4.1 8.8E-05 31.9 2.4 43 68-111 128-176 (200)
18 KOG1511|consensus 58.0 12 0.00025 32.1 3.2 47 3-55 197-244 (397)
19 PF00581 Rhodanese: Rhodanese- 53.9 15 0.00032 23.6 2.6 28 10-38 3-31 (113)
20 PLN02451 homoserine kinase 47.9 31 0.00068 28.7 4.2 44 8-53 191-237 (370)
21 COG2605 Predicted kinase relat 46.2 21 0.00046 29.9 2.9 51 2-55 143-202 (333)
22 TIGR01219 Pmev_kin_ERG8 phosph 41.9 45 0.00099 28.9 4.4 49 3-54 208-284 (454)
23 TIGR01920 Shik_kin_archae shik 38.9 1.1E+02 0.0024 23.9 5.9 43 4-50 121-164 (261)
24 cd01903 Ntn_AC_NAAA AC_NAAA Th 33.4 81 0.0018 24.3 4.3 58 18-76 139-198 (231)
25 PF15652 Tox-SHH: HNH/Endo VII 23.9 55 0.0012 23.0 1.6 25 42-67 31-55 (100)
26 KOG2475|consensus 23.5 48 0.001 29.8 1.6 43 12-55 69-114 (587)
27 TIGR01616 nitro_assoc nitrogen 22.7 64 0.0014 22.9 1.8 40 66-106 13-54 (126)
28 PF06384 ICAT: Beta-catenin-in 21.1 98 0.0021 20.8 2.3 21 58-78 13-33 (78)
29 PRK01123 shikimate kinase; Pro 20.2 3.5E+02 0.0075 21.2 5.7 46 4-53 132-177 (282)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.4e-26 Score=191.93 Aligned_cols=75 Identities=27% Similarity=0.383 Sum_probs=72.7
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCC-CcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcch
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPS-QAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPH 76 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~-~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk 76 (115)
|+|++||||||++|++|++|||++|||++|+++++|||. +++|||+|||++|.++. ++||+||+||++|++.|++
T Consensus 168 fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~vkr~la~-seYn~Rr~ece~A~~~l~~ 243 (390)
T COG0153 168 FVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNVKRELAD-SEYNERRAECEEAAEFLGV 243 (390)
T ss_pred ccCCcCchHHHHHHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCCccccch-hHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999997 59999999999999875 9999999999999999999
No 2
>PTZ00290 galactokinase; Provisional
Probab=99.91 E-value=1.4e-24 Score=183.77 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=72.2
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCC----CCcEEEEEeCCccccccC--CCchHHHHHHHHHHHHHc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP----SQAVFVVAQSLATKNKAQ--SSEFNTRVVECRLSAKWI 74 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp----~~~~~vV~nS~v~h~l~~--~s~Yn~Rr~eCe~Aa~~L 74 (115)
|+|++||||||++|++|++|||++|||++++++++|++ +++.|+|+||+++|++++ +++||+||.||++|+++|
T Consensus 207 ~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L 286 (468)
T PTZ00290 207 FCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKI 286 (468)
T ss_pred hcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999986 489999999999999875 239999999999999999
Q ss_pred chhc
Q psy7886 75 PHLQ 78 (115)
Q Consensus 75 gk~~ 78 (115)
++..
T Consensus 287 ~~~~ 290 (468)
T PTZ00290 287 GKHR 290 (468)
T ss_pred cccc
Confidence 8654
No 3
>PLN02865 galactokinase
Probab=99.89 E-value=1.4e-23 Score=175.83 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=74.8
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCC-------CCcEEEEEeCCccccccCCCchHHHHHHHHHHHHH
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP-------SQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKW 73 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp-------~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~ 73 (115)
|+|++||+|||++|++|++|++++|||+|++++++||| .++.|+|+||+++|.+.++++||+||.||++|+++
T Consensus 184 ~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~ 263 (423)
T PLN02865 184 YLGLRNGILDQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARF 263 (423)
T ss_pred hcCCCCccccHHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999987 37899999999999876358999999999999999
Q ss_pred cchhcCCC
Q psy7886 74 IPHLQTPQ 81 (115)
Q Consensus 74 Lgk~~g~~ 81 (115)
|++++|+.
T Consensus 264 l~~~~~~~ 271 (423)
T PLN02865 264 LLEASGND 271 (423)
T ss_pred HHHhcCCc
Confidence 99888753
No 4
>PLN02521 galactokinase
Probab=99.86 E-value=1.2e-21 Score=166.82 Aligned_cols=81 Identities=49% Similarity=0.762 Sum_probs=74.7
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCcccccc--CCCchHHHHHHHHHHHHHcchhc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKA--QSSEFNTRVVECRLSAKWIPHLQ 78 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l~--~~s~Yn~Rr~eCe~Aa~~Lgk~~ 78 (115)
++|++||+|||++|++|++|++++|||+|++++++|+|.++.|||+||+++|.+. .++.||+||+||+.|+++|++++
T Consensus 201 ~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~ 280 (497)
T PLN02521 201 HIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKL 280 (497)
T ss_pred ccCCCCChHHHHHHHhcCCCcEEEEecCCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhc
Confidence 5799999999999999999999999999999999999999999999999777643 24899999999999999999988
Q ss_pred CCC
Q psy7886 79 TPQ 81 (115)
Q Consensus 79 g~~ 81 (115)
+++
T Consensus 281 ~~~ 283 (497)
T PLN02521 281 GMS 283 (497)
T ss_pred CCc
Confidence 875
No 5
>PRK05322 galactokinase; Provisional
Probab=99.82 E-value=4.1e-20 Score=152.34 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=73.7
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCC-CcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcchhcC
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPS-QAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPHLQT 79 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~-~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk~~g 79 (115)
|+|++||+|||+++++|++|+++++||++++++++|+|. ++.|+|+||+++|.+. +++||.||.||++|++.++++++
T Consensus 165 ~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~~~~~lvv~dsg~~~~~~-~~~yn~r~~e~~~a~~~l~~~~~ 243 (387)
T PRK05322 165 FIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNKRRELA-DSKYNERRAECEKALEELQKKLD 243 (387)
T ss_pred cCCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCCCCeEEEEEECCCccccC-cchhhHHHHHHHHHHHHHhhhcC
Confidence 679999999999999999999999999999999999984 7889999999999876 49999999999999999998776
Q ss_pred C
Q psy7886 80 P 80 (115)
Q Consensus 80 ~ 80 (115)
+
T Consensus 244 ~ 244 (387)
T PRK05322 244 I 244 (387)
T ss_pred c
Confidence 5
No 6
>PRK05101 galactokinase; Provisional
Probab=99.74 E-value=4.3e-18 Score=140.03 Aligned_cols=77 Identities=27% Similarity=0.396 Sum_probs=72.3
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcchhc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPHLQ 78 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk~~ 78 (115)
|+|++||+|||+++++|++|+++++||++++++++|+|+++.|+|+||+++|++. +++||+||+||++|++.+++..
T Consensus 165 ~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~~~~~~~~~~~~vv~~sg~~~~l~-~~~y~~r~~e~~~A~~~l~~~~ 241 (382)
T PRK05101 165 FVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVIINSNVKRGLV-DSEYNTRRQQCETAARFFGVKA 241 (382)
T ss_pred hcCCCCccHHHHHHHcCCCCeEEEEEcCCCceEEeeCCCCcEEEEEeCCCCcccc-ccchhHHHHHHHHHHHHhChHh
Confidence 5799999999999999999999999999999999999999999999999999876 5999999999999999988654
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.74 E-value=4.4e-18 Score=139.39 Aligned_cols=76 Identities=28% Similarity=0.451 Sum_probs=71.6
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCC-CcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcchh
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPS-QAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPHL 77 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~-~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk~ 77 (115)
|.|++||+|||+++++|++|+++++||++++++++|+|+ ++.|+|+||+++|++. ++.||.||+||+.|++.|++.
T Consensus 163 ~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~~~~~~~~~~~~lvv~~s~~~~~t~-~~~y~~r~~e~~~a~~~l~~~ 239 (386)
T TIGR00131 163 FVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFVIANTNVKRTLA-PSNYNTRRQECTTAANFLAAT 239 (386)
T ss_pred ccCCCcchHHHHHHHhccCCcEEEEEcCCCceeeecCCCCCeEEEEEeCCCccccc-cchhHHHHHHHHHHHHHhccc
Confidence 579999999999999999999999999999999999997 8999999999999876 489999999999999999865
No 8
>PRK00555 galactokinase; Provisional
Probab=99.71 E-value=3.1e-17 Score=134.36 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=68.9
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCC---CcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcch
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPS---QAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPH 76 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~---~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk 76 (115)
|+|++||+|||+++++|+.|+++++||++++++++|+|+ ++.|+|+||+++|.+. +++||.||++|+.|++.++.
T Consensus 144 ~~G~~~G~~Dq~as~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~~~~~-~~~y~~rr~~~~~~~~~~~~ 221 (363)
T PRK00555 144 YVGAPTGLLDQLAALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHA-GGEYAARRASCERAAADLGV 221 (363)
T ss_pred hCCCCCChhHHHHHHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCccccc-chhhHHHHHHHHHHHHHhCc
Confidence 589999999999999999999999999999999999985 4689999999999765 48999999999999998864
No 9
>KOG0631|consensus
Probab=99.53 E-value=3.3e-15 Score=126.93 Aligned_cols=109 Identities=32% Similarity=0.452 Sum_probs=88.7
Q ss_pred CCcCccchHHHHHHHhcCCCceEEee--cCCCceeeeeCCCCcEEEEEeCCcccccc--CCCchHHHHHHHHHHHHHcch
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQ--FHPLRSEDVVLPSQAVFVVAQSLATKNKA--QSSEFNTRVVECRLSAKWIPH 76 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allID--c~~l~~~~vplp~~~~~vV~nS~v~h~l~--~~s~Yn~Rr~eCe~Aa~~Lgk 76 (115)
|+|+++|+|||++|++|++|+|++|| +.|++...+++|++-+|+|.||.+..++. ..+.||.|+.||..|+..+++
T Consensus 197 ~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~ 276 (489)
T KOG0631|consen 197 YIGLNSGGMDQAASVLAEKGHALLVDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAA 276 (489)
T ss_pred ccCcCCCcHHHHHHHHHhcCceEEecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHH
Confidence 68999999999999999999999999 56999999999998899999999999984 368999999999999999999
Q ss_pred hcCCChhhhhhhh-cccchhhHhhhcCCHHHHHhhc
Q psy7886 77 LQTPQQSYIKINM-KKRNFLKGSLQDASYNIMLQKL 111 (115)
Q Consensus 77 ~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 111 (115)
+++++.+.+-.+- .-+. |+| ..-.++.-|.++|
T Consensus 277 k~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~l 310 (489)
T KOG0631|consen 277 KILVELPAYILRYQLQRA-WRG-DIGEGYERAEEML 310 (489)
T ss_pred HhhcccHHHHHhhhhhhc-ccc-ccchhHHHHHHHH
Confidence 9999887222111 1222 666 4466666443333
No 10
>PRK03817 galactokinase; Provisional
Probab=99.42 E-value=3.3e-13 Score=109.18 Aligned_cols=77 Identities=26% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcchhc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPHLQ 78 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk~~ 78 (115)
+.|+++|+|||+++++|++++++++|++++.++++|+|+++.|+|++|+++|++. +..||+||++|++|++.|++.+
T Consensus 139 ~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~sg~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 215 (351)
T PRK03817 139 FVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFPEDYEILVFDTGVKRELA-SSEYNERRQECEEALKILGKKS 215 (351)
T ss_pred ccCCCCcCchhhheeeccCCEEEEEecCCCceEEEecCCCcEEEEEeCCCccccc-cchhHHHHHHHHHHHHHhCccc
Confidence 4689999999999999999999999999999999999999999999999998654 4789999999999999987643
No 11
>PLN02677 mevalonate kinase
Probab=97.07 E-value=0.00074 Score=56.59 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=40.7
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
-|.++|+ |++++.+|. +|+|++...++++.|.++.|+|+||+++|+.
T Consensus 197 hG~pSGi-D~a~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~~sT 243 (387)
T PLN02677 197 HGKPSGI-DNTVSTYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVGRNT 243 (387)
T ss_pred hCCCCch-hHHHHhcCC-----eEEEcCCCceecCCCCCceEEEEECCCCCcH
Confidence 4788997 999999985 7888888888888888899999999999964
No 12
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=96.17 E-value=0.011 Score=45.70 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=36.2
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
+.|.+|| +||+++++| ..+++|++... ..++.|.+..++|++|+++|+.
T Consensus 131 ~~G~~sG-~D~~~~~~G---g~~~~~~~~~~-~~~~~~~~~~lvl~~tg~~~~T 179 (273)
T TIGR00549 131 AHGKPSG-IDTATSTYG---GPVYFEKGEGE-FTKLISLDGYFVIADTGVSGST 179 (273)
T ss_pred hCCCCch-HhHHHHhcC---CeEEEEcCCCc-eeeccCCCeEEEEEECCCCCcH
Confidence 3588899 599999996 46677876543 2344455788999999999864
No 13
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=95.78 E-value=0.0056 Score=50.29 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=36.1
Q ss_pred chHHHHHHHhc------CCCceEEeec--------------CCCceeeeeCCCCcEEEEEeCCcccc
Q psy7886 7 GGMDQAIAFLA------SPGCAKHIQF--------------HPLRSEDVVLPSQAVFVVAQSLATKN 53 (115)
Q Consensus 7 GiMDQ~as~~g------k~g~allIDc--------------~~l~~~~vplp~~~~~vV~nS~v~h~ 53 (115)
+..||+++++| +.++..++|+ +++.++++++|+++.|+|++|+++++
T Consensus 162 sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~ 228 (358)
T TIGR01220 162 SCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPAS 228 (358)
T ss_pred CcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcC
Confidence 34599999976 3455555554 34678899998899999999999985
No 14
>PTZ00298 mevalonate kinase; Provisional
Probab=94.72 E-value=0.092 Score=42.43 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCC--CceeeeeCCCCcEEEEEeCCccccc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHP--LRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~--l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
|.|.++|+ |+.++++|. +++.+..+ ..++++++|+++.++|++++++++.
T Consensus 147 ~~g~~sG~-D~~~~~~Gg---~~~~~~~~g~~~~~~l~~~~~~~lvv~~~~~~~sT 198 (328)
T PTZ00298 147 YHGTPSGA-DNTAATYGG---LISYRRVNGKSVFKRIAFQQPLYLVVCSTGITAST 198 (328)
T ss_pred hcCCCChH-HHHHHHcCC---eEEEecCCCccceeEecCCCCCeEEEEECCCchhH
Confidence 35889995 999888764 44444333 2466777777888999999998854
No 15
>PRK03926 mevalonate kinase; Provisional
Probab=89.32 E-value=0.74 Score=36.25 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=30.4
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
.|.++| +||+++++| |.+++.+.. ++++ +++.++|++++.+++.
T Consensus 129 ~G~~sg-~D~~~~~~G--g~~~~~~~~-----~l~~-~~~~~vl~~~~~~~sT 172 (302)
T PRK03926 129 QGAASP-TDTYVSTMG--GFVTIPDRK-----KLPF-PECGIVVGYTGSSGST 172 (302)
T ss_pred cCCCch-HHHHHHhcC--CeEEEcCCC-----cCCC-CCceEEEEECCCCCcH
Confidence 466777 599999998 455554443 3343 3777899999988753
No 16
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=82.13 E-value=1.9 Score=40.56 Aligned_cols=50 Identities=20% Similarity=0.072 Sum_probs=35.1
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecCC-C----ceeeeeCCC------CcEEEEEeCCccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFHP-L----RSEDVVLPS------QAVFVVAQSLATKNK 54 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~~-l----~~~~vplp~------~~~~vV~nS~v~h~l 54 (115)
++.++|++||+++++| -++++++.+ . ..+++|++. +-.++|++|+++|..
T Consensus 779 lhg~~g~qDq~~a~~G---G~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T 839 (974)
T PRK13412 779 LTTGGGWQDQYGGVLP---GVKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTA 839 (974)
T ss_pred HCCCCchhhhhhHhcC---CeEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeH
Confidence 4678899999999987 466777765 1 133444332 346999999999853
No 17
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.47 E-value=4.1 Score=31.85 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=32.2
Q ss_pred HHHHHHcchhcCCChhhhh----hhh--cccchhhHhhhcCCHHHHHhhc
Q psy7886 68 RLSAKWIPHLQTPQQSYIK----INM--KKRNFLKGSLQDASYNIMLQKL 111 (115)
Q Consensus 68 e~Aa~~Lgk~~g~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~ 111 (115)
+.|.++|.+.++ +.+..+ +.+ .+...++.+++|-||+.|.|+.
T Consensus 128 k~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnFSy~~~~~ki 176 (200)
T cd00280 128 KKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNFSYSHFMQKM 176 (200)
T ss_pred HHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhccHHHHHHHH
Confidence 578899998887 433222 222 5667899999999999999875
No 18
>KOG1511|consensus
Probab=58.02 E-value=12 Score=32.06 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=34.9
Q ss_pred cCccchHHHHHHHhcCCCceEEeecCC-CceeeeeCCCCcEEEEEeCCcccccc
Q psy7886 3 GTQGGGMDQAIAFLASPGCAKHIQFHP-LRSEDVVLPSQAVFVVAQSLATKNKA 55 (115)
Q Consensus 3 G~~cGiMDQ~as~~gk~g~allIDc~~-l~~~~vplp~~~~~vV~nS~v~h~l~ 55 (115)
|.|.| .|..++..|. +|-|++ .+++.+.-.+.+.++++||.|+++..
T Consensus 197 GtpSG-iDnaV~t~Gg-----~i~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk 244 (397)
T KOG1511|consen 197 GTPSG-IDNAVCTYGG-----LISFKKGVEIESLKHLPPLRILLTNTRVPRNTK 244 (397)
T ss_pred CCCcc-cchhhhccCc-----eEEeecCccceecccCCCceEEEEccccCccHH
Confidence 67777 5888887664 455555 36776666678999999999999754
No 19
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=53.94 E-value=15 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCceEEeecCC-CceeeeeCC
Q psy7886 10 DQAIAFLASPGCAKHIQFHP-LRSEDVVLP 38 (115)
Q Consensus 10 DQ~as~~gk~g~allIDc~~-l~~~~vplp 38 (115)
||+...+ +.+..++||||+ -++..-.+|
T Consensus 3 ~el~~~l-~~~~~~liD~R~~~~~~~~hI~ 31 (113)
T PF00581_consen 3 EELKEML-ENESVLLIDVRSPEEYERGHIP 31 (113)
T ss_dssp HHHHHHH-TTTTEEEEEESSHHHHHHSBET
T ss_pred HHHHhhh-hCCCeEEEEeCCHHHHHcCCCC
Confidence 5666677 889999999997 444443334
No 20
>PLN02451 homoserine kinase
Probab=47.94 E-value=31 Score=28.69 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=31.3
Q ss_pred hHHHHHH-HhcCCCceEEeecCCCceeeeeCC--CCcEEEEEeCCcccc
Q psy7886 8 GMDQAIA-FLASPGCAKHIQFHPLRSEDVVLP--SQAVFVVAQSLATKN 53 (115)
Q Consensus 8 iMDQ~as-~~gk~g~allIDc~~l~~~~vplp--~~~~~vV~nS~v~h~ 53 (115)
-+|+.+. ++| |.++..+..+++...+++| +++.|+++..+++.+
T Consensus 191 h~Dnva~a~~G--G~v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~s 237 (370)
T PLN02451 191 HADNIAPALMG--GFVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAP 237 (370)
T ss_pred CccchhHhhcC--CEEEEEecCCCeEEEeecCCCCCeEEEEEcCCCCcc
Confidence 3788864 555 5666556666777777777 578899998887764
No 21
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=46.21 E-value=21 Score=29.88 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=37.0
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecCCC---ceeeeeCCC------CcEEEEEeCCcccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPL---RSEDVVLPS------QAVFVVAQSLATKNKA 55 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~~l---~~~~vplp~------~~~~vV~nS~v~h~l~ 55 (115)
++...|.=||++.++|- -.|..|+.- .++++++.. ...+++.-|+++|...
T Consensus 143 l~~~gG~QDqYaaA~GG---FnfMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss 202 (333)
T COG2605 143 LKIVGGKQDQYAAAFGG---FNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSS 202 (333)
T ss_pred hccccccccHHHHHhCC---ceEEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchh
Confidence 46778999999999976 457777764 345555542 5678888999999643
No 22
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=41.92 E-value=45 Score=28.86 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=35.1
Q ss_pred cCccchHHHHHHHhcCCCceEEeecCC----------------------------CceeeeeCCCCcEEEEEeCCccccc
Q psy7886 3 GTQGGGMDQAIAFLASPGCAKHIQFHP----------------------------LRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 3 G~~cGiMDQ~as~~gk~g~allIDc~~----------------------------l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
|-+..+.|-.++++|. ..+--|.+ .+++.+++|+++.++|.+++.+++.
T Consensus 208 Gk~GSG~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llvgdtg~~ssT 284 (454)
T TIGR01219 208 GKVGSGFDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPGGGSST 284 (454)
T ss_pred CCCCCchhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccCCCCCEEEEEcCCCCcCc
Confidence 3345668999888876 45555543 1455677888999999999988754
No 23
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=38.91 E-value=1.1e+02 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=27.1
Q ss_pred CccchHHHHHHHhcCCCceEEeecCCCcee-eeeCCCCcEEEEEeCCc
Q psy7886 4 TQGGGMDQAIAFLASPGCAKHIQFHPLRSE-DVVLPSQAVFVVAQSLA 50 (115)
Q Consensus 4 ~~cGiMDQ~as~~gk~g~allIDc~~l~~~-~vplp~~~~~vV~nS~v 50 (115)
..+|.+|++++++|. ..+.|.++.+.. ..++| +..+++...+.
T Consensus 121 ~~~~~~D~~~~~~gG---~~~~~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 121 VTGAFDDAAASYLGG---IVITDNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred CCCcHHHHHHHHhCC---EEEEeCCCceEEEecCCC-CceEEEEECCC
Confidence 578999999999874 467777664433 33433 33455555443
No 24
>cd01903 Ntn_AC_NAAA AC_NAAA This conserved domain includes two closely related proteins, acid ceramidase (AC, also known as N-acylsphingosine amidohydrolase), and N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC catalyzes the hydrolysis of ceramide to sphingosine and fatty acid. Ceramide is required for the biosynthesis of most sphingolipids and plays an important role in many signal transduction pathways by inducing apoptosis and/or arresting cell growth. An inherited deficiency of AC activity leads to the lysosomal storage disorder known as Farber disease. AC is considered a "rheostat" important for maintaining the proper intracellular levels of these lipids since hydrolysis of ceramide is the only source of sphingosine in cells. NAAA is a eukaryotic glycoprotein that hydrolyzes bioactive N-acylethanolamines, including anandamide (an endocannabinoid) and N-palmitoylethanolamine (an anti-inflammatory and neuroprotective substance), to fatty acids and ethanolamine at acidic pH
Probab=33.36 E-value=81 Score=24.31 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=41.9
Q ss_pred CCCceEEeecCCCce-eeeeCC-CCcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcch
Q psy7886 18 SPGCAKHIQFHPLRS-EDVVLP-SQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPH 76 (115)
Q Consensus 18 k~g~allIDc~~l~~-~~vplp-~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk 76 (115)
++|.++.|...+... ...++. .+-...++.||-.|-+. +-.+..||.-++.+.+.+++
T Consensus 139 ~~ge~vVIE~~~~~~~~~~~l~~~~~~~~lv~TNyD~~~~-~~~~d~rr~~a~~~l~~~~~ 198 (231)
T cd01903 139 KPGEGVVITRNRDSVADVYPLDLKNGTWFLVQTNYDRWKP-PPFLDDRRTPAIKCMNALGQ 198 (231)
T ss_pred CCCCEEEEEECCCCceeeEEeccCCCCeEEEEecCCCCCC-CcccccCcCHHHHHHHHhcc
Confidence 588999998877554 333343 23334566889999764 46789999999999988876
No 25
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=23.93 E-value=55 Score=23.01 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=18.5
Q ss_pred EEEEEeCCccccccCCCchHHHHHHH
Q psy7886 42 VFVVAQSLATKNKAQSSEFNTRVVEC 67 (115)
Q Consensus 42 ~~vV~nS~v~h~l~~~s~Yn~Rr~eC 67 (115)
.++...++.+|... +..||.||.+-
T Consensus 31 ~ll~s~~g~~Ha~i-saa~~~~r~~r 55 (100)
T PF15652_consen 31 TLLESGSGLPHAII-SAAQNAQRDER 55 (100)
T ss_pred eeeccCCCCchHHH-HHHHHHHHHHH
Confidence 45566677899654 47899999875
No 26
>KOG2475|consensus
Probab=23.53 E-value=48 Score=29.75 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=30.2
Q ss_pred HHHHhcCCCceEEeecCC---CceeeeeCCCCcEEEEEeCCcccccc
Q psy7886 12 AIAFLASPGCAKHIQFHP---LRSEDVVLPSQAVFVVAQSLATKNKA 55 (115)
Q Consensus 12 ~as~~gk~g~allIDc~~---l~~~~vplp~~~~~vV~nS~v~h~l~ 55 (115)
+...-....+.++|+|-. |.--.+| |.+..|.|+||+-|+++.
T Consensus 69 ~~e~~e~~~~iiLiNcG~~vDL~~~L~~-P~e~~~fViDSHRP~nl~ 114 (587)
T KOG2475|consen 69 FLELQEQIKYIILINCGATVDLTRLLQP-PSEDVIFVIDSHRPFNLE 114 (587)
T ss_pred HHhhccCceEEEEecCCcchhHHHHhCC-cccceEEEEeCCCCcchh
Confidence 344556778899999965 3333333 656678999999999764
No 27
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.68 E-value=64 Score=22.88 Aligned_cols=40 Identities=5% Similarity=-0.111 Sum_probs=18.9
Q ss_pred HHHHHHHHcchhcCCChhhhhhhh--cccchhhHhhhcCCHHH
Q psy7886 66 ECRLSAKWIPHLQTPQQSYIKINM--KKRNFLKGSLQDASYNI 106 (115)
Q Consensus 66 eCe~Aa~~Lgk~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 106 (115)
.|+.|.+.|..+ |++.+...+.. .....++.++++++++.
T Consensus 13 t~RKA~~~L~~~-gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~ 54 (126)
T TIGR01616 13 NNARQKAALKAS-GHDVEVQDILKEPWHADTLRPYFGNKPVGS 54 (126)
T ss_pred HHHHHHHHHHHC-CCCcEEEeccCCCcCHHHHHHHHHHcCHHH
Confidence 467777777543 66554443321 22223444444444443
No 28
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=21.06 E-value=98 Score=20.77 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=16.8
Q ss_pred CchHHHHHHHHHHHHHcchhc
Q psy7886 58 SEFNTRVVECRLSAKWIPHLQ 78 (115)
Q Consensus 58 s~Yn~Rr~eCe~Aa~~Lgk~~ 78 (115)
..|++++.|--.|++.||...
T Consensus 13 d~y~~qkvEIL~ALrkLge~L 33 (78)
T PF06384_consen 13 DVYTQQKVEILTALRKLGEKL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 579999999999999998764
No 29
>PRK01123 shikimate kinase; Provisional
Probab=20.23 E-value=3.5e+02 Score=21.20 Aligned_cols=46 Identities=7% Similarity=-0.061 Sum_probs=29.3
Q ss_pred CccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCcccc
Q psy7886 4 TQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKN 53 (115)
Q Consensus 4 ~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~ 53 (115)
...|.+|++++++|. ..+.|...... ...++.++.|+|..++.+..
T Consensus 132 ~~g~~~d~~~~~~GG---~~~~~~~~~~~-~~~~~~~~~~vv~~p~~~~~ 177 (282)
T PRK01123 132 VTGAFDDACASYFGG---VTVTDNREMKL-LKRDEVELDVLVLIPPEGAF 177 (282)
T ss_pred ccCchhHHHHHHhCC---EEEEcCCCceE-EEEecCCcEEEEEECCCCcc
Confidence 467889999999984 35555443221 22334458888888886653
Done!