Query psy7886
Match_columns 115
No_of_seqs 134 out of 732
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:19:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 99.9 1.6E-24 5.4E-29 183.7 7.7 80 1-81 200-287 (520)
2 2a2c_A N-acetylgalactosamine k 99.7 1.9E-17 6.5E-22 137.4 9.1 81 1-81 201-281 (478)
3 1pie_A Galactokinase; galactos 99.5 2.3E-14 8E-19 116.2 8.8 75 1-76 194-269 (419)
4 1wuu_A Galactokinase; galactos 99.5 1.1E-13 3.8E-18 111.3 7.8 76 1-77 184-260 (399)
5 2cz9_A Probable galactokinase; 99.4 5.8E-13 2E-17 104.0 8.7 74 1-75 140-213 (350)
6 3k85_A D-glycero-D-manno-hepto 98.5 3E-08 1E-12 79.3 1.6 54 1-54 151-210 (357)
7 2pg9_A Phosphomevalonate kinas 97.6 4E-05 1.4E-09 60.5 3.6 53 2-54 144-215 (337)
8 3k17_A LIN0012 protein; protei 97.3 5.5E-05 1.9E-09 60.6 1.4 50 3-54 157-226 (365)
9 1kvk_A MK, mevalonate kinase; 97.3 0.00022 7.5E-09 56.8 4.5 47 2-54 197-243 (395)
10 2hfs_A Mevalonate kinase, puta 96.1 0.012 4E-07 45.2 6.3 50 1-54 150-201 (332)
11 3gon_A Phosphomevalonate kinas 96.0 0.0065 2.2E-07 46.2 4.2 52 3-54 143-213 (335)
12 2x7i_A Mevalonate kinase; tran 95.9 0.0051 1.7E-07 46.8 3.4 48 2-54 140-187 (308)
13 2oi2_A Mevalonate kinase; enzy 94.9 0.04 1.4E-06 41.2 5.3 47 2-54 128-175 (292)
14 4hac_A Mevalonate kinase; GHMP 94.2 0.032 1.1E-06 43.4 3.3 42 3-54 152-194 (321)
15 1kkh_A Mevalonate kinase; mixe 92.6 0.11 3.9E-06 39.4 4.1 46 3-54 154-205 (317)
16 1h72_C HK, homoserine kinase; 86.1 0.9 3.1E-05 33.9 4.5 42 9-52 135-177 (296)
17 3bu8_A Telomeric repeat-bindin 75.1 2.4 8.1E-05 32.8 3.4 44 68-111 131-180 (235)
18 3bqo_A Telomeric repeat-bindin 72.4 1.7 5.9E-05 33.1 2.0 44 68-111 134-183 (211)
19 3owt_C Regulatory protein SIR3 47.2 3.6 0.00012 21.3 -0.2 15 17-31 1-15 (27)
20 2v8p_A 4-diphosphocytidyl-2-C- 40.8 6.3 0.00022 29.2 0.2 23 30-52 150-172 (271)
21 2ww4_A 4-diphosphocytidyl-2C-m 35.4 5.9 0.0002 29.9 -0.7 40 10-53 141-180 (283)
22 1wqe_A OMTX3; structure, scorp 27.7 20 0.00069 18.4 0.8 9 64-72 15-23 (26)
23 1wqc_A OMTX1; toxin; NMR {Opis 27.4 22 0.00074 18.3 0.9 9 64-72 14-22 (26)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.90 E-value=1.6e-24 Score=183.72 Aligned_cols=80 Identities=28% Similarity=0.491 Sum_probs=75.7
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCC-CceeeeeCCC----CcEEEEEeCCc---cccccCCCchHHHHHHHHHHHH
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHP-LRSEDVVLPS----QAVFVVAQSLA---TKNKAQSSEFNTRVVECRLSAK 72 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~-l~~~~vplp~----~~~~vV~nS~v---~h~l~~~s~Yn~Rr~eCe~Aa~ 72 (115)
|+|++||+|||++|++|++||+++|||+| +++++||+|+ ++.|+|+||++ +|.++ +++||+||+||++|++
T Consensus 200 ~vG~~~G~mDQ~as~~G~~g~~l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la-~s~YN~Rr~eCe~Aa~ 278 (520)
T 3v2u_C 200 YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETA-PTNYNLRVIEVTVAAN 278 (520)
T ss_dssp GGTCCCCSHHHHHHHHCBTTBEEEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHT-TTTHHHHHHHHHHHHH
T ss_pred HhCCCCchhhHHHHHhCCCCeEEEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccc-cchhhHHHHHHHHHHH
Confidence 68999999999999999999999999999 9999999997 89999999999 77665 4999999999999999
Q ss_pred HcchhcCCC
Q psy7886 73 WIPHLQTPQ 81 (115)
Q Consensus 73 ~Lgk~~g~~ 81 (115)
+|++++|++
T Consensus 279 ~L~~~~g~~ 287 (520)
T 3v2u_C 279 ALATRYSVA 287 (520)
T ss_dssp HHHHHTTBC
T ss_pred HHHHhhCCc
Confidence 999999876
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.71 E-value=1.9e-17 Score=137.40 Aligned_cols=81 Identities=57% Similarity=0.883 Sum_probs=75.1
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcchhcCC
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPHLQTP 80 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk~~g~ 80 (115)
|+|++||+|||+++++|++|+++++||++++++++|+|+++.|+|+||+++|++..+++||.||.||+.|+++|++..|+
T Consensus 201 ~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~~~~~~~~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~ 280 (478)
T 2a2c_A 201 YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSL 280 (478)
T ss_dssp GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEEEEECCCTTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCccHHHHHHHhccCCcEEEEEcCCCceEEecCCCCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhhhcc
Confidence 47999999999999999999999999999999999999999999999999997655689999999999999999998765
Q ss_pred C
Q psy7886 81 Q 81 (115)
Q Consensus 81 ~ 81 (115)
+
T Consensus 281 ~ 281 (478)
T 2a2c_A 281 Q 281 (478)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.53 E-value=2.3e-14 Score=116.16 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCC-CCcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcch
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP-SQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPH 76 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp-~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk 76 (115)
|+|.+||+|||+++++|..+.++++|+++..++++|+| +++.|+|++++++|+... ++||+||++|++|.++|++
T Consensus 194 ~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~~~l~~~~~~~~~vl~~~~~~~~t~~-~~y~~r~~~~~~a~~~l~~ 269 (419)
T 1pie_A 194 YIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRALTE-SKYNERFAETREALKRMQT 269 (419)
T ss_dssp TTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEECCCTTEEEEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCccchhHHHHHhccCCeEEEeecCCCceEEeecCCCCcEEEEEECCCcccccc-chHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999998 799999999999997654 8999999999999999975
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.46 E-value=1.1e-13 Score=111.34 Aligned_cols=76 Identities=25% Similarity=0.316 Sum_probs=67.9
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCC-CCcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcchh
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP-SQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPHL 77 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp-~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lgk~ 77 (115)
|.|.+||+|||.++++|..++++++|+++.+++++|+| +++.|+|++++++|+... +.||.||++|+.|.++|++.
T Consensus 184 ~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~t~~-~~y~~r~~~~~~a~~~l~~~ 260 (399)
T 1wuu_A 184 FAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLAS-SEYPVRRRQCEEVARALGKE 260 (399)
T ss_dssp HTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCCSSEEEEEEEEEEEC--CT-TTHHHHHHHHHHHHHHTTCS
T ss_pred hcCCCCccHHHHHHHhccCCeEEEEecCCCceEEecCCCCCeEEEEEECCCcccccc-ccHHHHHHHHHHHHHHhChh
Confidence 46999999999999999999999999999999999998 499999999999997653 79999999999999999654
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.41 E-value=5.8e-13 Score=104.03 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=65.4
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccccCCCchHHHHHHHHHHHHHcc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIP 75 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l~~~s~Yn~Rr~eCe~Aa~~Lg 75 (115)
+.|++||+|||+++++|..|+++++|+++..++++|+|+++.|+|++++++|++.. ..|++||.+|++|++.++
T Consensus 140 ~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~~~l~~~~~~~~vl~~~~~~~~~~t-~~~~~r~~~~~~a~~~~~ 213 (350)
T 2cz9_A 140 FVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVFYTGVRRELAS-SEYAERKHIAEESLKILG 213 (350)
T ss_dssp TTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCTTEEEEEEECSCC----C-HHHHHHHHHHHHHHHHHT
T ss_pred hcCCCccchhHHHHHhcCCCeEEEEecCCCcEEEEcCCCCcEEEEEECCCCCcccc-chHHHHHHHHHHHHHHhC
Confidence 46999999999999999999999999999999999999999999999999986654 679999999999998875
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=3e-08 Score=79.28 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=44.0
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCC------cEEEEEeCCccccc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQ------AVFVVAQSLATKNK 54 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~------~~~vV~nS~v~h~l 54 (115)
|+|.+||+|||+++++|...++.++|++++.++++|+|+. +.++|++|+++|+.
T Consensus 151 ~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a 210 (357)
T 3k85_A 151 DLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSS 210 (357)
T ss_dssp TTCCCCCSHHHHHHHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC------
T ss_pred HccCCCcHHHHHHHHhCCceEEEEeCCCceeEEEEecChhhhhhcCceEEEEECCCcccH
Confidence 6799999999999999999999999999999999999863 67899999999854
No 7
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=97.58 E-value=4e-05 Score=60.51 Aligned_cols=53 Identities=13% Similarity=0.007 Sum_probs=42.3
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecC-------------------CCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFH-------------------PLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~-------------------~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
+|.+||+|||+++++|........|+. +++++++++|+++.|+|++++++++.
T Consensus 144 ~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T 215 (337)
T 2pg9_A 144 RGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVS 215 (337)
T ss_dssp TTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCH
T ss_pred hCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccch
Confidence 688999999999999975544434653 35788888888999999999998853
No 8
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=97.32 E-value=5.5e-05 Score=60.59 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=39.2
Q ss_pred cCccchHHHHHHHhcC------CCceEEeecC--------------CCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 3 GTQGGGMDQAIAFLAS------PGCAKHIQFH--------------PLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 3 G~~cGiMDQ~as~~gk------~g~allIDc~--------------~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
| ++|+|||+++++|. .+.+++.|++ .++++++|+|++ .++|++|+++|+.
T Consensus 157 g-~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT 226 (365)
T 3k17_A 157 G-NGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVST 226 (365)
T ss_dssp S-SCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCH
T ss_pred C-CCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccch
Confidence 5 78999999999987 2334444443 578889999888 9999999999964
No 9
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=97.29 E-value=0.00022 Score=56.85 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=39.1
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
.|.+||+ ||.++++| .++++ ++.+++++++|+++.|+|++++++|+.
T Consensus 197 ~G~~sG~-D~~~~~~G---g~~~~--~~~~~~~l~~~~~~~~vl~~~~~~~~T 243 (395)
T 1kvk_A 197 HGNPSGV-DNSVSTWG---GALRY--QQGKMSSLKRLPALQILLTNTKVPRST 243 (395)
T ss_dssp HSSCCSH-HHHHHHHC---SEEEE--SSSCEEECSCCCCEEEEEEECCCCCCH
T ss_pred ecCCCCc-chHHhhhc---ceEEE--cCCCceeccCCCCcEEEEEECCCCCch
Confidence 4899999 99999986 45554 566888888778999999999999865
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=96.11 E-value=0.012 Score=45.25 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=37.8
Q ss_pred CCcCccchHHHHHHHhcCCCceEEeecCCC--ceeeeeCCCCcEEEEEeCCccccc
Q psy7886 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPL--RSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 1 ~vG~~cGiMDQ~as~~gk~g~allIDc~~l--~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
+.|.++|+ |+.++++|. .++.+...- .++++++|+++.++|++++++++.
T Consensus 150 ~~G~~~G~-D~~~~~~Gg---~~~~~~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T 201 (332)
T 2hfs_A 150 YHGTPSGA-DNTAATYGG---LILYRRQNGKSVFKPIAFQQRLYLVVVGTGINAST 201 (332)
T ss_dssp SSSCCCSH-HHHHHHHCE---EEEEEECSSSEEEEEECCCSCEEEEEEECSCCCCH
T ss_pred hcCCCCcH-hHHHHhcCC---eEEEecCCCCcceeeecCCCCcEEEEEECCCCccH
Confidence 35889998 999999875 344443332 577788888999999999998854
No 11
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=95.97 E-value=0.0065 Score=46.17 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=35.2
Q ss_pred cCccchHHHHHHHhcCCCceEEeecC-------------------CCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 3 GTQGGGMDQAIAFLASPGCAKHIQFH-------------------PLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 3 G~~cGiMDQ~as~~gk~g~allIDc~-------------------~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
+.++|+|||+++++|..-.....|+. ....+.++.|.++.+++++++.+++.
T Consensus 143 ~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t 213 (335)
T 3gon_A 143 GDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVS 213 (335)
T ss_dssp TCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCH
T ss_pred cCCCCCCCcceeecCCeEEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhH
Confidence 34466699999999874333322221 24556666777899999999988743
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=95.91 E-value=0.0051 Score=46.85 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=35.8
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
.|.+||+ |+.++.. |.++++| +...++++|+|.++.++|++++++++.
T Consensus 140 ~g~~sG~-d~~~~~~---g~~~~~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT 187 (308)
T 2x7i_A 140 HGKPSGI-DTQTIVS---GKPVWFQ-KGHAETLKTLSLDGYMVVIDTGVKGST 187 (308)
T ss_dssp HSSCCHH-HHHHHHH---TSCEEEE-TTEEEECSCCCBSSEEEEEECCC--CC
T ss_pred CCCCchH-HHHHhhC---CceEEEE-cCCCceEeccCCCceEEEEECcCCCCH
Confidence 4788996 8777776 4577788 666777888777889999999987754
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=94.91 E-value=0.04 Score=41.20 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=34.5
Q ss_pred CcCccchHHHHHHHhcCCCceEEeecCCCceeeeeCC-CCcEEEEEeCCccccc
Q psy7886 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP-SQAVFVVAQSLATKNK 54 (115)
Q Consensus 2 vG~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp-~~~~~vV~nS~v~h~l 54 (115)
.|+|||+ ||+++++|. .+++ ++....+++|++ +.+ ++|++++++++.
T Consensus 128 ~~~p~g~-d~~~~~~gg---~~~~-~~~~~~~~~~~~~~~~-~~i~~~~~~~sT 175 (292)
T 2oi2_A 128 HMNPSGL-DAKTCLSDQ---PIRF-IKNVGFTELEMDLSAY-LVIADTGVYGHT 175 (292)
T ss_dssp TCCCCSH-HHHHHTCSS---CEEE-ETTTEEEECCCCCSCE-EEEEECSSCCCH
T ss_pred cCCCCch-hHHHHhcCc---eEEE-EcCCCceeecCCCCCE-EEEEECCCCCcH
Confidence 5889996 999999863 3444 555667777765 355 899999988754
No 14
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=94.15 E-value=0.032 Score=43.42 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=31.6
Q ss_pred cCccchHHHHHHHhcCCCceEEe-ecCCCceeeeeCCCCcEEEEEeCCccccc
Q psy7886 3 GTQGGGMDQAIAFLASPGCAKHI-QFHPLRSEDVVLPSQAVFVVAQSLATKNK 54 (115)
Q Consensus 3 G~~cGiMDQ~as~~gk~g~allI-Dc~~l~~~~vplp~~~~~vV~nS~v~h~l 54 (115)
|. +|++||+++++|. ++++ |+. .+++| ++.|+|++++++++.
T Consensus 152 g~-~~~~D~~~~~~Gg---~~~~~~~~-----~l~~p-~~~~vlv~p~~~~sT 194 (321)
T 4hac_A 152 GA-ASPTDTYVSTFGG---VVTIPERR-----KLKTP-DCGIVIGDTGVFSST 194 (321)
T ss_dssp SC-CCSHHHHHHHHCS---EEEETTCC-----EECCC-CCEEEEEECCCCCCH
T ss_pred CC-CcHHHHHHHHcCC---eEEEcCCc-----eeccC-CCEEEEEECCCCccH
Confidence 55 8899999999975 5555 333 33455 889999999999864
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=92.64 E-value=0.11 Score=39.42 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=33.0
Q ss_pred cCccchHHHHHHHhcCCCceEEeecCCCceeeeeCC--C----CcEEEEEeCCccccc
Q psy7886 3 GTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP--S----QAVFVVAQSLATKNK 54 (115)
Q Consensus 3 G~~cGiMDQ~as~~gk~g~allIDc~~l~~~~vplp--~----~~~~vV~nS~v~h~l 54 (115)
|.++ +|||.++++| |.+++ ++.+.+++++| + ++.++|++++++++.
T Consensus 154 g~~s-g~D~~~~~~G--g~~~~---~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T 205 (317)
T 1kkh_A 154 GKAS-ITDTSTITYK--GILEI---KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKT 205 (317)
T ss_dssp SSCC-SHHHHHHHHC--SEEEE---SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCH
T ss_pred CCCc-hHHHHHHHhC--CeEEE---cCCCceEecCCcccccccCcEEEEEECCCcCcH
Confidence 5654 5999999998 55544 45667777754 1 257999999998854
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=86.10 E-value=0.9 Score=33.91 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHH-HHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCccc
Q psy7886 9 MDQAI-AFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATK 52 (115)
Q Consensus 9 MDQ~a-s~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h 52 (115)
+|+.+ +++| |.++..++.+..++++++|+++.++|++++++.
T Consensus 135 ~ddv~~~~~g--g~~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~ 177 (296)
T 1h72_C 135 ADNVAPAIFG--GFTMVTNYEPLEVLHIPIDFKLDILIAIPNISI 177 (296)
T ss_dssp CTTHHHHHHC--SEEEEEETTTTEEEEECCCSCCCEEEECCSSCC
T ss_pred ccchHHHHhC--CEEEEEeCCceEEEEEcCCCCeEEEEEeCCCCc
Confidence 56655 5766 567777777777899999888889999999764
No 17
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=75.13 E-value=2.4 Score=32.77 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=34.3
Q ss_pred HHHHHHcchhcCCChhhhhhhh------cccchhhHhhhcCCHHHHHhhc
Q psy7886 68 RLSAKWIPHLQTPQQSYIKINM------KKRNFLKGSLQDASYNIMLQKL 111 (115)
Q Consensus 68 e~Aa~~Lgk~~g~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 111 (115)
++|.++|.+.++-+....++.+ .+..+.+-+++|-||+.|.|+.
T Consensus 131 ~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki 180 (235)
T 3bu8_A 131 EKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKM 180 (235)
T ss_dssp HHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhccHHHHHHHH
Confidence 5789999999987644433332 6677899999999999999876
No 18
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=72.36 E-value=1.7 Score=33.08 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHHHcchhcCCChhhhhh----hh--cccchhhHhhhcCCHHHHHhhc
Q psy7886 68 RLSAKWIPHLQTPQQSYIKI----NM--KKRNFLKGSLQDASYNIMLQKL 111 (115)
Q Consensus 68 e~Aa~~Lgk~~g~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~ 111 (115)
++|.++|.+.++-+.+..++ .+ .+....+-+++|-||+.|.|+.
T Consensus 134 k~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki 183 (211)
T 3bqo_A 134 KEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI 183 (211)
T ss_dssp HHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHHHccHHHHHHHH
Confidence 57889999888765332222 22 6677899999999999999986
No 19
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=47.18 E-value=3.6 Score=21.30 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.2
Q ss_pred cCCCceEEeecCCCc
Q psy7886 17 ASPGCAKHIQFHPLR 31 (115)
Q Consensus 17 gk~g~allIDc~~l~ 31 (115)
+++|.|.+|||.+|+
T Consensus 1 sekgnakmidfatls 15 (27)
T 3owt_C 1 SEKGNAKMIDFATLS 15 (27)
T ss_pred CCCCcceeeehHHHH
Confidence 368999999998764
No 20
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=40.80 E-value=6.3 Score=29.24 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=16.2
Q ss_pred CceeeeeCCCCcEEEEEeCCccc
Q psy7886 30 LRSEDVVLPSQAVFVVAQSLATK 52 (115)
Q Consensus 30 l~~~~vplp~~~~~vV~nS~v~h 52 (115)
-.++++++|.++.++|++++++.
T Consensus 150 ~~~~~l~~~~~~~~vl~~p~~~~ 172 (271)
T 2v8p_A 150 EVLEPVETEISGKITLVIPQVSS 172 (271)
T ss_dssp TEEEECCCCCCSEEEEEECSSCC
T ss_pred CEEEEccCCCCcEEEEEeCCCCC
Confidence 34666674448889999988754
No 21
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=35.38 E-value=5.9 Score=29.89 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCceEEeecCCCceeeeeCCCCcEEEEEeCCcccc
Q psy7886 10 DQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKN 53 (115)
Q Consensus 10 DQ~as~~gk~g~allIDc~~l~~~~vplp~~~~~vV~nS~v~h~ 53 (115)
|..++++|. ..+...+.-..+++++| ++.++|++++++.+
T Consensus 141 dv~~~~~gg---~~~~~g~g~~~~~l~~~-~~~~vl~~p~~~~s 180 (283)
T 2ww4_A 141 DVPVFVRGH---AAFAEGVGEILTPVDPP-EKWYLVAHPGVSIP 180 (283)
T ss_dssp THHHHHHTB---CEEEETTTTEEEECCCC-CCEEEEECCSCCCC
T ss_pred CHHHhhcCC---eEEEEecCccceEcCCC-CcEEEEEeCCCCCc
Confidence 555555543 22333333345666665 67889999887653
No 22
>1wqe_A OMTX3; structure, scorpion toxin, cystine-stabilized helix- turn-helix; NMR {Opisthacanthus madagascariensis}
Probab=27.68 E-value=20 Score=18.45 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=7.0
Q ss_pred HHHHHHHHH
Q psy7886 64 VVECRLSAK 72 (115)
Q Consensus 64 r~eCe~Aa~ 72 (115)
++|||+|.+
T Consensus 15 VkeCEeAC~ 23 (26)
T 1wqe_A 15 VKACEEACQ 23 (26)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 678998863
No 23
>1wqc_A OMTX1; toxin; NMR {Opisthacanthus madagascariensis} PDB: 1wqd_A
Probab=27.43 E-value=22 Score=18.35 Aligned_cols=9 Identities=44% Similarity=0.711 Sum_probs=7.0
Q ss_pred HHHHHHHHH
Q psy7886 64 VVECRLSAK 72 (115)
Q Consensus 64 r~eCe~Aa~ 72 (115)
++|||+|.+
T Consensus 14 VkeCEeAC~ 22 (26)
T 1wqc_A 14 VKECEEACK 22 (26)
T ss_dssp SHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 578999874
Done!