RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7886
(115 letters)
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 92.6 bits (230), Expect = 2e-23
Identities = 45/72 (62%), Positives = 55/72 (76%)
Query: 3 GTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEFNT 62
GT+GGGMDQ+I+FLA G AK I+F PLR+ DV LPS AVFV+A S NKA +S FN
Sbjct: 203 GTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNI 262
Query: 63 RVVECRLSAKWI 74
RV+ECRL+AK +
Sbjct: 263 RVMECRLAAKLL 274
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 78.3 bits (192), Expect = 2e-18
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHP-LRSEDVVLPS----QAVFVVAQSLATKNKA 55
+G GGMDQA + A +++F P L++ P + FV+A +L NK
Sbjct: 200 YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKF 259
Query: 56 Q--SSEFNTRVVECRLSAKWI 74
+ + +N RV+E ++A +
Sbjct: 260 ETAPTNYNLRVIEVTVAANAL 280
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 51.1 bits (123), Expect = 6e-09
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 1 MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEF 60
+G G +DQ G + H L E + P +V + + A SSE+
Sbjct: 140 FVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVFYTGVRRELA-SSEY 198
Query: 61 NTRVVECRLSAKWI 74
R S K +
Sbjct: 199 AERKHIAEESLKIL 212
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 47.4 bits (113), Expect = 1e-07
Identities = 15/71 (21%), Positives = 27/71 (38%)
Query: 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEFN 61
+G G +DQ A + + L+ E V + + +V + S++N
Sbjct: 195 IGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYN 254
Query: 62 TRVVECRLSAK 72
R E R + K
Sbjct: 255 ERFAETREALK 265
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 47.0 bits (112), Expect = 2e-07
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 2 LGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP-SQAVFVVAQSLATKNKAQSSEF 60
G G MDQ I+ + G A I L + V L + ++ S ++ SSE+
Sbjct: 185 AGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNS-NVRHSLASSEY 243
Query: 61 NTRVVECRLSAK 72
R +C A+
Sbjct: 244 PVRRRQCEEVAR 255
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR,
TSAR, WHTH, DNA- transcription, transcription
regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A*
3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Length = 305
Score = 27.2 bits (61), Expect = 1.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 7 GGMDQAIAFLASPGCAKHIQFHPLRSEDVVL 37
G +D A+ ++ PL DVV+
Sbjct: 140 GTLDFALTAAHKHDIDTDLEAQPLYVSDVVI 170
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein
fragment, metal transporter protei divalent cations,
metal transport; 2.90A {Archaeoglobus fulgidus}
Length = 266
Score = 26.2 bits (58), Expect = 2.3
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 22 AKHIQFHPLRSEDVVLPSQ---------AVFVVAQSLATKNKAQSSEFN 61
+ + HPL +ED++ +Q +F+V + L + + +
Sbjct: 85 CEFLGIHPLAAEDILNTAQRVKIEDYDDHLFLVLKILLYNETLEIDQLS 133
>2bbh_A Divalent cation transport-related protein; transporter, Mg,
membrane, structural genomics, structural G consortium,
SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP:
d.328.1.1
Length = 269
Score = 25.4 bits (56), Expect = 4.4
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 22 AKHIQFHPLRSEDVVLPSQ---------AVFVVAQSL 49
+ HPL ED++ Q VF+V +
Sbjct: 80 GEFFGTHPLVLEDILNVHQRPKVEFFENYVFIVLKMF 116
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 24.9 bits (55), Expect = 6.9
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 13 IAFLASPGCAKHIQFHPLRSED--VVLPS 39
+A + + Q PL + + VVL +
Sbjct: 57 VAIVYDLDLSPEWQTVPLMTREPMVVLGA 85
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 24.5 bits (54), Expect = 8.7
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 5 QGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLPSQAVFVVAQSLATKNKAQSSEFNTRV 64
+ D + K+ +F ++ E F++ A K K +++E V
Sbjct: 155 KASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIV--YAEKRKKKTAELVNEV 212
Query: 65 VECR 68
+
Sbjct: 213 AKIE 216
>2iub_A CORA, divalent cation transport-related protein; membrane protein,
ION transporter; 2.9A {Thermotoga maritima} SCOP:
d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Length = 363
Score = 24.6 bits (54), Expect = 9.7
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 22 AKHIQFHPLRSEDVVLPSQ---------AVFVVAQSL 49
+ HPL ED++ Q VF+V +
Sbjct: 89 GEFFGIHPLVLEDILNVHQRPKVEFFENYVFIVLKMF 125
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 24.5 bits (53), Expect = 9.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 42 VFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIPH 76
V+++ +L TK+K S R W+P
Sbjct: 8 VYLLDDTLVTKSKYGSHYGEKVFDGYRE---WVPW 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.378
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,549,992
Number of extensions: 72208
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 12
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)