RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7886
         (115 letters)



>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 215

 Score = 44.9 bits (105), Expect = 2e-07
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 1   MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP 38
             G   G MDQ I+ +   G A  I    L +  V L 
Sbjct: 176 FAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLS 213


>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 176

 Score = 37.5 bits (86), Expect = 9e-05
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 1   MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDVVLP 38
            +G   G +DQ             +    L+ E +  P
Sbjct: 138 FVGVPCGILDQFAVVFGKKDNVIFLDTQTLQYEYIPFP 175


>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
           [TaxId: 1358]}
          Length = 205

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 1   MLGTQGGGMDQAIAFLASPGCAKHIQFHPLRSEDV 35
            +G   G +DQ          A  +  + L+ E V
Sbjct: 166 YIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMV 200


>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
          [TaxId: 1358]}
          Length = 183

 Score = 28.5 bits (63), Expect = 0.13
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 42 VFVVAQSLATKNKAQSSEFNTRVVECRLSAKWI 74
            V+  +   +     S++N R  E R + K +
Sbjct: 3  DIVIMNTNKPRALT-ESKYNERFAETREALKRM 34


>d1lsha3 f.7.1.1 (A:621-1073) Lipovitellin-phosvitin complex;
           beta-sheet shell regions {Lamprey (Ichthyomyzon
           unicuspis) [TaxId: 30308]}
          Length = 452

 Score = 25.4 bits (55), Expect = 1.7
 Identities = 5/35 (14%), Positives = 13/35 (37%)

Query: 60  FNTRVVECRLSAKWIPHLQTPQQSYIKINMKKRNF 94
             T + +  +   +           I++N ++ NF
Sbjct: 254 LTTDLAKAGMQTHYKTSAGLGVNGKIEMNARESNF 288


>d2o6pa1 b.1.28.1 (A:29-150) Iron-regulated surface determinant
           protein C, IsdC {Staphylococcus aureus [TaxId: 1280]}
          Length = 122

 Score = 24.8 bits (54), Expect = 2.0
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)

Query: 61  NTRVVECRLSAKWIPHLQTPQQSYIKINMKKRNFLKGSLQDASYNIMLQ 109
           + R  E       +  L       I + + ++   K    D  YNI  +
Sbjct: 70  DERTSEFE-----VSKLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYK 113


>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 171

 Score = 24.3 bits (52), Expect = 4.3
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 42 VFVVAQSLATKNKAQSSEFNTRVVECRLSAKWIP 75
            +V  +   K +  SSE+  R      S + + 
Sbjct: 3  SVLVFYT-GVKRELASSEYAERKRIAEESLRILG 35


>d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 151

 Score = 23.9 bits (51), Expect = 5.7
 Identities = 5/18 (27%), Positives = 12/18 (66%), Gaps = 2/18 (11%)

Query: 86  KINMKKRNFLKGSLQDAS 103
           K+ +K R+ L  +L++ +
Sbjct: 1   KVQLKGRDLL--TLKNFT 16


>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 274

 Score = 23.8 bits (51), Expect = 7.0
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 12  AIAFLASPGCAKHI 25
            I FLA    + +I
Sbjct: 234 IIVFLADRNLSSYI 247


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,422
Number of extensions: 13353
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 10
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)