BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7887
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 103/186 (55%), Gaps = 11/186 (5%)
Query: 118 VQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQR 177
++E+L V+E+ L + P ++ L +S EEL + IL+PNT+ V FK+ QR
Sbjct: 299 LEEMLLVTEDALHPEPYNPE-------EICRCLGISLEELRTQILSPNTQDVLIFKLYQR 351
Query: 178 ALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCF 237
A HVY EA RV +F +C + E +Q LG LMNQSH S YECS LD LV
Sbjct: 352 AKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDIC 409
Query: 238 REAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDL--IFTTKPQ 295
R+ GA G+RLTGAGWGGC V++ + + V +Y S P+ +F TKP
Sbjct: 410 RKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAPEKQSLFATKPG 469
Query: 296 TGAIIF 301
GA++
Sbjct: 470 GGALVL 475
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 36 IIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKXXXXXXXXXXXXXX 95
++AK K + W +L L E+Q KL +SL+EM+ + + LHPE Y
Sbjct: 273 LLAKYKSLQ-WDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEEL 331
Query: 96 XXXXLTPNTRSVASFKVKQ 114
L+PNT+ V FK+ Q
Sbjct: 332 RTQILSPNTQDVLIFKLYQ 350
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 146 VQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERF--LSVCRSDISEEQ 203
V + L S EE D LT + K+ QRA HVY E+ RV + L S ++E
Sbjct: 382 VAQSLNCSREEFTRDYLTTSPVRFQVLKLYQRAKHVYSESLRVLKAVKLMTTASFTADED 441
Query: 204 KLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS 263
+Q G LMN+S S YECS +D + + G+YG+RLTGAGWGGC V L
Sbjct: 442 FFKQFGALMNESQASCDKLYECSCPEIDKICSIALSNGSYGSRLTGAGWGGCTVHLVPGG 501
Query: 264 SC-------EALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQ 302
EAL + Y + + I +KP G+ +++
Sbjct: 502 PNGNIEKVKEALANEFYKVKYPKITDAELENAIIVSKPALGSCLYE 547
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 138 TRSVASFKVQEI---LEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSV 194
+R + F V E L S EE D LT K+ QRA HVY E+ RV + L +
Sbjct: 343 SRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKM 402
Query: 195 CRSDI--SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 252
S ++E G LMN+S S YECS + + + G++G+RLTGAGW
Sbjct: 403 MTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGW 462
Query: 253 GGCVVALSDKSSCEALVTQVQA----KFYT----DQRTSSKPDLIFTTKPQTGAIIFQ 302
GGC + L S V QV+ KFY D D I +KP G +++
Sbjct: 463 GGCTIHLV-PSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE 519
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 138 TRSVASFKVQEI---LEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSV 194
+R + F V E L S EE D LT K+ QRA HVY E+ RV + L +
Sbjct: 328 SRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKM 387
Query: 195 CRSDI--SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 252
S ++E G LMN+S S YECS + + + G++G+RLTGAGW
Sbjct: 388 MTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGW 447
Query: 253 GGCVVALSDKSSCEALVTQVQA----KFYT----DQRTSSKPDLIFTTKPQTGAIIFQ 302
GGC + L S V QV+ KFY D D I +KP G +++
Sbjct: 448 GGCTIHLV-PSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE 504
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 72/151 (47%), Gaps = 26/151 (17%)
Query: 151 EVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGT 210
EV+E++L L P R S+ V++ A R L V D +E ++++G
Sbjct: 221 EVTEKDLGK--LPPLHRKFFSYIVRENA-----------RVLEV--RDALKEGDIEKVGK 265
Query: 211 LMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSC----E 266
++ +H LA Y S E LD V E GAYGARLTGAG+GG +AL DK +
Sbjct: 266 ILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGFGGSAIALVDKDKAKTIGD 325
Query: 267 ALVTQVQAKFYTDQRTSSKPDLIFTTKPQTG 297
A++ + AKF + F KP G
Sbjct: 326 AILREYLAKFSWKAK-------YFVVKPSDG 349
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 76/166 (45%), Gaps = 31/166 (18%)
Query: 139 RSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALH-VYEEAYRVERFLSVCRS 197
R +Q + E+S EE D+ NT + + +RA H VYE R+
Sbjct: 266 RMQTRLDIQSLGELSNEEFDA-----NTDLIGDETLIKRARHAVYEN----------NRT 310
Query: 198 DISEEQ----KLQQLGTLMNQSHTSLATKYECSHEALDSLV-TCFREAGAYGARLTGAGW 252
I+++ L + G L+N SH SL YE + LD+L T ++AG GAR+TGAG+
Sbjct: 311 KIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGF 370
Query: 253 GGCVVALSDKSSCEAL---VTQVQ-------AKFYTDQRTSSKPDL 288
GGC +AL + A V QV A FY Q S L
Sbjct: 371 GGCAIALVAHDNVSAFRKAVGQVYEEVVGYPASFYVAQIGSGSTKL 416
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 15/126 (11%)
Query: 151 EVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGT 210
EV E EL L P R + V++ A R L V D +E ++++G
Sbjct: 219 EVREGELSK--LPPLHRKFFGYIVRENA-----------RVLEV--RDALKEGNVEEVGK 263
Query: 211 LMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVT 270
++ +H LA YE S + LD V + GAYGARLTGAG+GG +AL DK E +
Sbjct: 264 ILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGE 323
Query: 271 QVQAKF 276
++ ++
Sbjct: 324 EILREY 329
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALS 260
++ LQ+LG LMN +H L + + S L+S+V R GA GA+L+G G GG VAL+
Sbjct: 238 QKGDLQRLGQLMNANH-DLCRQIDVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALA 296
Query: 261 DKS-SCEALVTQVQAK 275
S +A+V ++AK
Sbjct: 297 ASSDQRDAIVKGLKAK 312
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALS 260
++ LQ+LG L N +H L + + S L+S+V R GA GA+L+G G GG VAL+
Sbjct: 238 QKGDLQRLGQLXNANH-DLCRQIDVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALA 296
Query: 261 DKS-SCEALVTQVQAK 275
S +A+V ++AK
Sbjct: 297 ASSDQRDAIVKGLKAK 312
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 197 SDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCV 256
SD+ E K + L + N+ H L SH+ ++ L+ +E GA +LTGAG GG +
Sbjct: 218 SDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSM 276
Query: 257 VALS-DKSSCEALVTQVQ 273
+ L+ D + + +V V+
Sbjct: 277 LLLAKDLPTAKNIVKAVE 294
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 206 QQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL 259
+ G LM ++H L K S LD +V G +GA+LTGAG GGCV+ L
Sbjct: 239 EDFGKLMTKNH-ELLKKLNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIIL 290
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 196 RSDISEEQK-LQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGG 254
+++I+ QK + LG +++Q+H L S EA DSLV GA GA+++G G GG
Sbjct: 202 QAEIAISQKDAEGLGQILSQAHLHLKEIGVSSLEA-DSLVETALSHGALGAKMSGGGLGG 260
Query: 255 CVVAL 259
C++AL
Sbjct: 261 CIIAL 265
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 206 QQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL 259
+ G LM ++H L K S LD +V G +GA+LTGAG GGCV+ L
Sbjct: 236 EDFGKLMTKNH-ELLKKLNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIIL 287
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 147 QEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQ 206
+ + EV EEL++ R + S + +RA HV E R + + R +
Sbjct: 260 ESLREVQLEELEA------ARDLVSKEGFRRARHVVGEIRRTAQAAAALRRG-----DYR 308
Query: 207 QLGTLMNQSHTSLATKYECSHEALDSLV-TCFREAGAYGARLTGAGWGGCVVALSDKSSC 265
G L +SH SL YE S LD LV G YG+R TG G+GGC V L + S+
Sbjct: 309 AFGRLXVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRXTGGGFGGCTVTLLEASAA 368
Query: 266 EALVTQVQ------AKFYTDQ 280
+Q A FY Q
Sbjct: 369 PHAXRHIQEHYGGTATFYLSQ 389
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 230 LDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKP 286
L L+ R AGA+GA++TGAG GGC VAL+ C + V + T +KP
Sbjct: 259 LSQLIYSARAAGAFGAKITGAGGGGCXVALTAPEKCNQVAEAVAGA--GGKVTITKP 313
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 230 LDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKP 286
L L+ R AGA+GA++TGAG GGC VAL+ C + V + T +KP
Sbjct: 259 LSQLIYSARAAGAFGAKITGAGGGGCXVALTAPEKCNQVAEAVAGA--GGKVTITKP 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,797,442
Number of Sequences: 62578
Number of extensions: 267313
Number of successful extensions: 751
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 20
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)