Query psy7887
Match_columns 315
No_of_seqs 262 out of 1448
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:19:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 1.3E-41 2.9E-46 343.4 21.1 221 21-302 260-495 (497)
2 KOG0631|consensus 100.0 2.6E-40 5.6E-45 327.6 15.0 221 19-302 256-488 (489)
3 PLN02865 galactokinase 100.0 4E-36 8.7E-41 298.4 17.1 124 173-301 295-423 (423)
4 COG0153 GalK Galactokinase [Ca 100.0 8.1E-36 1.8E-40 290.7 15.4 151 138-301 235-389 (390)
5 PTZ00290 galactokinase; Provis 100.0 6.8E-34 1.5E-38 285.4 17.3 132 172-306 327-461 (468)
6 PRK05101 galactokinase; Provis 100.0 3.6E-30 7.7E-35 252.4 16.1 147 140-300 233-381 (382)
7 PRK05322 galactokinase; Provis 100.0 1.6E-29 3.4E-34 248.3 16.6 122 172-301 265-387 (387)
8 PRK00555 galactokinase; Provis 100.0 9.1E-28 2E-32 234.1 16.5 151 137-301 212-362 (363)
9 TIGR00131 gal_kin galactokinas 99.9 1.9E-27 4.1E-32 232.7 13.8 149 139-300 231-385 (386)
10 PRK03817 galactokinase; Provis 99.9 5.2E-24 1.1E-28 205.7 16.9 145 139-301 206-350 (351)
11 COG1577 ERG12 Mevalonate kinas 99.5 5.3E-14 1.1E-18 135.4 11.0 76 200-279 220-295 (307)
12 PTZ00298 mevalonate kinase; Pr 99.5 1.6E-13 3.4E-18 132.2 14.1 86 188-279 227-313 (328)
13 PF08544 GHMP_kinases_C: GHMP 99.5 5.8E-14 1.2E-18 108.1 7.3 77 201-277 6-84 (85)
14 TIGR00549 mevalon_kin mevalona 99.4 2.6E-13 5.7E-18 125.8 8.7 68 186-259 206-273 (273)
15 PRK03926 mevalonate kinase; Pr 99.4 2.3E-12 5.1E-17 121.6 14.6 92 201-303 209-301 (302)
16 PLN02677 mevalonate kinase 99.4 3E-12 6.5E-17 126.8 14.6 92 203-302 291-383 (387)
17 TIGR01220 Pmev_kin_Gr_pos phos 99.3 2E-11 4.4E-16 119.2 11.6 74 200-274 265-344 (358)
18 KOG1511|consensus 99.2 2E-10 4.4E-15 111.7 13.7 90 207-304 293-383 (397)
19 PRK13412 fkp bifunctional fuco 99.2 1.6E-10 3.5E-15 125.1 13.6 74 200-274 875-950 (974)
20 COG2605 Predicted kinase relat 99.1 5E-10 1.1E-14 107.0 9.6 76 200-275 237-313 (333)
21 PLN02451 homoserine kinase 98.7 2.2E-07 4.8E-12 91.7 12.1 105 185-302 258-366 (370)
22 PRK01212 homoserine kinase; Pr 98.6 1.9E-07 4.1E-12 88.4 10.7 105 181-300 194-300 (301)
23 TIGR00191 thrB homoserine kina 98.1 1.8E-05 4E-10 75.4 10.2 100 186-300 199-301 (302)
24 PRK03188 4-diphosphocytidyl-2- 98.0 2.7E-05 5.8E-10 74.1 8.6 96 188-302 198-296 (300)
25 PRK00128 ipk 4-diphosphocytidy 97.9 1.7E-05 3.6E-10 74.7 6.2 70 201-275 202-272 (286)
26 PTZ00299 homoserine kinase; Pr 97.9 6.9E-05 1.5E-09 73.4 9.9 108 181-302 202-323 (336)
27 TIGR01920 Shik_kin_archae shik 97.8 7.6E-05 1.6E-09 70.2 8.0 63 201-274 191-253 (261)
28 PRK02534 4-diphosphocytidyl-2- 97.8 7.4E-05 1.6E-09 71.6 7.8 89 201-300 219-310 (312)
29 COG0083 ThrB Homoserine kinase 97.8 0.00026 5.7E-09 68.5 11.5 105 183-301 192-297 (299)
30 PRK01123 shikimate kinase; Pro 97.5 0.00062 1.4E-08 64.5 9.8 76 208-300 205-281 (282)
31 PRK14614 4-diphosphocytidyl-2- 97.5 0.00015 3.3E-09 68.7 5.0 47 226-274 221-268 (280)
32 PRK14613 4-diphosphocytidyl-2- 97.5 0.00032 6.9E-09 67.3 7.3 72 201-278 216-289 (297)
33 TIGR00154 ispE 4-diphosphocyti 97.0 0.001 2.2E-08 63.6 5.7 60 216-277 216-276 (293)
34 PRK14616 4-diphosphocytidyl-2- 96.9 0.0022 4.7E-08 60.9 7.0 72 202-279 205-277 (287)
35 PRK14615 4-diphosphocytidyl-2- 96.8 0.002 4.3E-08 61.8 5.1 47 226-274 239-286 (296)
36 COG1907 Predicted archaeal sug 96.7 0.027 5.9E-07 54.5 12.6 94 201-301 212-311 (312)
37 PRK14612 4-diphosphocytidyl-2- 96.6 0.0029 6.3E-08 59.7 4.9 49 226-276 216-265 (276)
38 TIGR00144 beta_RFAP_syn beta-R 96.6 0.033 7.1E-07 54.2 12.2 91 201-300 230-323 (324)
39 TIGR01219 Pmev_kin_ERG8 phosph 96.4 0.032 6.9E-07 57.1 11.6 72 204-277 353-430 (454)
40 PRK14609 4-diphosphocytidyl-2- 96.1 0.0036 7.8E-08 59.3 2.4 50 216-267 208-258 (269)
41 PRK14608 4-diphosphocytidyl-2- 95.8 0.014 3.1E-07 55.7 5.0 48 226-275 229-278 (290)
42 PRK14610 4-diphosphocytidyl-2- 93.7 0.12 2.5E-06 49.4 5.4 47 227-275 222-270 (283)
43 KOG1537|consensus 91.6 0.59 1.3E-05 45.2 7.0 112 174-300 235-352 (355)
44 PRK14611 4-diphosphocytidyl-2- 85.4 2.6 5.6E-05 39.8 6.8 54 201-261 199-253 (275)
45 KOG4644|consensus 84.7 5.9 0.00013 41.8 9.3 98 174-273 819-919 (948)
46 PRK00343 ipk 4-diphosphocytidy 84.6 1.6 3.4E-05 41.4 5.0 47 226-276 216-263 (271)
47 PRK00650 4-diphosphocytidyl-2- 81.9 2.7 5.9E-05 40.6 5.4 49 227-277 206-259 (288)
48 PF03460 NIR_SIR_ferr: Nitrite 80.5 3.7 8.1E-05 30.4 4.7 50 223-274 19-68 (69)
49 COG1947 IspE 4-diphosphocytidy 80.2 3.1 6.8E-05 40.4 5.2 46 227-274 225-271 (289)
50 PF03991 Prion_octapep: Copper 69.2 2.1 4.6E-05 20.1 0.5 6 248-253 2-7 (8)
51 TIGR01240 mevDPdecarb diphosph 67.8 68 0.0015 31.2 11.0 93 174-276 202-304 (305)
52 PRK05905 hypothetical protein; 58.9 10 0.00022 36.1 3.4 32 226-260 222-253 (258)
53 TIGR02957 SigX4 RNA polymerase 52.2 39 0.00085 31.8 6.2 22 188-214 170-191 (281)
54 PRK09636 RNA polymerase sigma 48.6 46 0.00099 31.4 6.1 21 77-97 130-150 (293)
55 PRK09635 sigI RNA polymerase s 46.6 45 0.00097 31.9 5.7 24 186-214 178-201 (290)
56 COG1685 Archaeal shikimate kin 46.3 51 0.0011 32.0 6.0 55 232-301 221-276 (278)
57 COG2221 DsrA Dissimilatory sul 41.4 45 0.00097 33.0 4.8 50 223-274 40-89 (317)
58 PF03683 UPF0175: Uncharacteri 39.1 1.5E+02 0.0032 22.8 6.6 39 51-89 36-74 (76)
59 KOG0484|consensus 32.1 53 0.0012 27.8 3.2 37 61-97 27-63 (125)
60 KOG2833|consensus 29.3 6.1E+02 0.013 25.7 11.4 91 174-277 224-330 (395)
61 PLN02407 diphosphomevalonate d 28.0 4.5E+02 0.0097 26.4 9.4 94 174-276 225-331 (343)
62 smart00342 HTH_ARAC helix_turn 26.5 1.4E+02 0.0031 21.3 4.5 61 34-97 4-70 (84)
63 COG3407 MVD1 Mevalonate pyroph 26.4 6.6E+02 0.014 25.1 10.2 95 174-278 206-310 (329)
64 KOG2304|consensus 25.6 3.2E+02 0.007 26.5 7.5 79 168-252 197-294 (298)
65 PF04539 Sigma70_r3: Sigma-70 25.4 1E+02 0.0022 22.9 3.6 19 79-97 21-39 (78)
66 TIGR02960 SigX5 RNA polymerase 24.9 1.5E+02 0.0032 28.1 5.3 21 77-97 157-177 (324)
67 COG0153 GalK Galactokinase [Ca 24.3 31 0.00067 35.0 0.6 19 21-39 225-243 (390)
68 PF12962 DUF3851: Protein of u 23.7 48 0.001 28.2 1.5 16 24-39 30-45 (124)
69 PHA02591 hypothetical protein; 23.5 72 0.0016 25.6 2.4 34 62-96 44-77 (83)
70 PF00543 P-II: Nitrogen regula 23.4 3.5E+02 0.0077 21.4 6.6 51 228-278 8-80 (102)
71 KOG3828|consensus 23.3 31 0.00067 35.0 0.4 33 7-39 218-259 (457)
72 PRK08241 RNA polymerase factor 21.4 1.8E+02 0.0038 27.9 5.2 21 77-97 168-188 (339)
73 PF10078 DUF2316: Uncharacteri 21.4 71 0.0015 26.0 2.1 27 71-97 16-42 (89)
74 PF12728 HTH_17: Helix-turn-he 21.0 80 0.0017 21.7 2.1 19 79-97 2-20 (51)
75 TIGR02066 dsrB sulfite reducta 20.6 1.8E+02 0.0038 28.9 5.0 48 225-274 41-88 (341)
76 PF00325 Crp: Bacterial regula 20.3 65 0.0014 21.3 1.3 19 78-96 2-20 (32)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=1.3e-41 Score=343.41 Aligned_cols=221 Identities=34% Similarity=0.525 Sum_probs=187.0
Q ss_pred eeecCCchHHHHHHHHHHhhcCCCccc----cccchhhhHHhh-----hcCHHHHHHHHHHhcCCCCCCHHHHHHHhcCC
Q psy7887 21 LVTTDSIPTAKKTLDIIAKKKDVDNWK----DILYLGELQTKL-----AVSLKEMIDIADAILHPEAYTKEEVQEILEVS 91 (315)
Q Consensus 21 ~~~~~rVvEcrlAa~~La~~~gl~~~~----~~~~L~~~q~~~-----~~~l~~~~~~~~~~l~~~~yt~~ei~~~l~~~ 91 (315)
-.||+||+||+.||.+|++++|+ +|+ ++.+|.|+++.+ +..+.+|+..+...++...||++++++.++.+
T Consensus 260 ~~Yn~R~~ec~~Aa~~L~~~~~~-~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~ 338 (497)
T PLN02521 260 TNYNNRVVECRLAAIVLAVKLGM-SAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGES 338 (497)
T ss_pred ccccHHHHHHHHHHHHHHhhcCC-cchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCc
Confidence 37999999999999999999999 676 377899998754 35778899999999999999999999999888
Q ss_pred hhhhhcccCCCCcccccccccccchhHHHHhhhhhhhhccccCCchhhhhhhcchhhhhcCCHHHhhhhhccccccccCc
Q psy7887 92 EEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVAS 171 (315)
Q Consensus 92 ~~~l~~~i~~~nt~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~ 171 (315)
.+++.++.++.| +.++ ..++
T Consensus 339 ~~~~~~~~~~~~-----------------------------------------------------------~~~~-~~~~ 358 (497)
T PLN02521 339 LTSIFKNSPTSL-----------------------------------------------------------AVLK-AAKH 358 (497)
T ss_pred HHHHhhcccccc-----------------------------------------------------------cccc-ccch
Confidence 877765333221 1111 1456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCC
Q psy7887 172 FKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 251 (315)
Q Consensus 172 ~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAG 251 (315)
|.+++||+||++||.||++|+++|++......+++.||+||++||.|||++|+||||++|.|+++|+++|++||||||||
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG 438 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAG 438 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCC
Confidence 78999999999999999999999953211223599999999999999999999999999999999999999999999999
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhhhccCC------CCCCCeEEEeeCCCceEEEe
Q psy7887 252 WGGCVVALSDKSSCEALVTQVQAKFYTDQRT------SSKPDLIFTTKPQTGAIIFQ 302 (315)
Q Consensus 252 fGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~------~~~~~~vf~t~p~~GA~i~~ 302 (315)
||||+|+|++++.++++++.+.+.|++++++ ...++.+|+++|++||+++.
T Consensus 439 ~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~~ 495 (497)
T PLN02521 439 WGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILK 495 (497)
T ss_pred CCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEee
Confidence 9999999999999999999999999997421 12357899999999999875
No 2
>KOG0631|consensus
Probab=100.00 E-value=2.6e-40 Score=327.56 Aligned_cols=221 Identities=30% Similarity=0.438 Sum_probs=186.2
Q ss_pred ceeeecCCchHHHHHHHHHHhhcCCCccc-cccchhhhHH---hhhcC---HHHHHHHHHHhcCCCCCCHHHHHHHhcCC
Q psy7887 19 SLLVTTDSIPTAKKTLDIIAKKKDVDNWK-DILYLGELQT---KLAVS---LKEMIDIADAILHPEAYTKEEVQEILEVS 91 (315)
Q Consensus 19 ~~~~~~~rVvEcrlAa~~La~~~gl~~~~-~~~~L~~~q~---~~~~~---l~~~~~~~~~~l~~~~yt~~ei~~~l~~~ 91 (315)
..--||.||+|||+|+..||+|+++ +|. -+.++...+. ..+.. +.+|+.+|++.+++++|+.+|++..|+.+
T Consensus 256 a~tnynlRv~E~~ia~~~la~k~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~ 334 (489)
T KOG0631|consen 256 AETNYNLRVVEGTIAAGELAAKILV-ELPAYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLD 334 (489)
T ss_pred hhhhhhceeEeeehhhHHHHHHhhc-ccHHHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccc
Confidence 3457999999999999999999999 665 2344443333 33444 44899999999999999999999999999
Q ss_pred hhhhhcccCCCCcccccccccccchhHHHHhhhhhhhhccccCCchhhhhhhcchhhhhcCCHHHhhhhhccccccccCc
Q psy7887 92 EEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVAS 171 (315)
Q Consensus 92 ~~~l~~~i~~~nt~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~ 171 (315)
.++|.++ +++.++.++..
T Consensus 335 ~~~f~~~--------------------------------------------------------------~~T~~~v~~~~ 352 (489)
T KOG0631|consen 335 TEEFLQS--------------------------------------------------------------LLTLAAVDLQV 352 (489)
T ss_pred hHHHHHH--------------------------------------------------------------hccccchhhHH
Confidence 9988763 33444455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCC
Q psy7887 172 FKVKQRALHVYEEAYRVERFLSVCRSDI-SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGA 250 (315)
Q Consensus 172 ~~l~~Ra~HV~~Ea~RV~~~~~al~~~~-l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGA 250 (315)
+++++|++||++|+.||+++..+|.... -..+.++.||+|||+||.||+.+|||||||+|+||++|+++|.+|+|+|||
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGa 432 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGA 432 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeecc
Confidence 7999999999999999999999996421 122668999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeccCCcHHHHHHHHHHHhhhccCC----CCCCCeEEEeeCCCceEEEe
Q psy7887 251 GWGGCVVALSDKSSCEALVTQVQAKFYTDQRT----SSKPDLIFTTKPQTGAIIFQ 302 (315)
Q Consensus 251 GfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~----~~~~~~vf~t~p~~GA~i~~ 302 (315)
|||||+++|+|.+.++.+++++.+.||++..+ .+.+..+++++|+.|++++.
T Consensus 433 GwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~~~k~~~~~skp~~g~~l~e 488 (489)
T KOG0631|consen 433 GWGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQDELKKALIVSKPAAGVLLLE 488 (489)
T ss_pred ccccceeeeccccchHHHHHhhhhhhhccccchhhhchhhceEEEecCchhhhhcc
Confidence 99999999999999999999999999998765 23456889999999998764
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=4e-36 Score=298.39 Aligned_cols=124 Identities=28% Similarity=0.457 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHc-CCceEEEeCCC
Q psy7887 173 KVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREA-GAYGARLTGAG 251 (315)
Q Consensus 173 ~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~-Ga~GaRlTGAG 251 (315)
.+++|++||++|+.||.+++++| +++|++.||+||++||.|||++|+|||||+|.|+++|++. |++||||||||
T Consensus 295 ~l~~Ra~Hv~~E~~Rv~~~~~al-----~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgG 369 (423)
T PLN02865 295 VLARRAEHYFSENMRVIKGVEAW-----ASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAG 369 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEeccC
Confidence 58899999999999999999998 7899999999999999999999999999999999999995 99999999999
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhhhccCC----CCCCCeEEEeeCCCceEEE
Q psy7887 252 WGGCVVALSDKSSCEALVTQVQAKFYTDQRT----SSKPDLIFTTKPQTGAIIF 301 (315)
Q Consensus 252 fGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~----~~~~~~vf~t~p~~GA~i~ 301 (315)
||||+|+|++.+.+++|+++|.+.|+++++. ...++.+|+++|++|++++
T Consensus 370 fGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 370 FRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred CccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 9999999999999999999999999986422 0124689999999999863
No 4
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-36 Score=290.67 Aligned_cols=151 Identities=32% Similarity=0.499 Sum_probs=137.9
Q ss_pred hhhhhhcch--hhhhcCCHHHhhhhhccccccccC-cHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Q psy7887 138 TRSVASFKV--QEILEVSEEELDSDILTPNTRSVA-SFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQ 214 (315)
Q Consensus 138 ~~~a~~~gv--~~Lrdvs~eel~~~~L~~~~~~~~-~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~ 214 (315)
..+|+.|++ +.|||++.++|.+.- . .++ +..+++|++|+++||+||+++++++ +++|+..||+||++
T Consensus 235 e~A~~~l~~~~~~L~d~~~~~~~~~~-~----~i~~~~~~~rRa~hvv~En~Rvl~a~~Al-----~~~dl~~fG~Lm~~ 304 (390)
T COG0153 235 EEAAEFLGVSIKSLRDVTDEEFAALQ-A----EIEVDPKIARRARHVVTENQRVLEAAKAL-----RSGDLTEFGELMNE 304 (390)
T ss_pred HHHHHHHHHhhhhhhhcCHHHHHhhh-h----hcccchHHHHHHHHHHhHHHHHHHHHHHH-----HcCCHHHHHHHHHH
Confidence 457889999 999999999998743 1 122 4689999999999999999999998 88999999999999
Q ss_pred hHHHHhhcCCCCChHHHHHHHHHHHc-CCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEee
Q psy7887 215 SHTSLATKYECSHEALDSLVTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTK 293 (315)
Q Consensus 215 SH~SLr~lye~S~peLD~Lv~iA~~~-Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~ 293 (315)
||.|||++|||||||||.||++|... |++||||||||||||+|+|+|.+.+++|+++|.++|++..+. ++.+|+++
T Consensus 305 SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~g~---k~~~yv~~ 381 (390)
T COG0153 305 SHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVTGL---KAAFYVVE 381 (390)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhhcCc---cccEEEEe
Confidence 99999999999999999999999876 779999999999999999999999999999999999999886 57899999
Q ss_pred CCCceEEE
Q psy7887 294 PQTGAIIF 301 (315)
Q Consensus 294 p~~GA~i~ 301 (315)
|++|++++
T Consensus 382 ~~~G~~~~ 389 (390)
T COG0153 382 ASQGAGVC 389 (390)
T ss_pred ccCCcccc
Confidence 99999865
No 5
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=6.8e-34 Score=285.42 Aligned_cols=132 Identities=20% Similarity=0.365 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cch-hhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHH-HcCCceEEEe
Q psy7887 172 FKVKQRALHVYEEAYRVERFLSVCRS-DIS-EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFR-EAGAYGARLT 248 (315)
Q Consensus 172 ~~l~~Ra~HV~~Ea~RV~~~~~al~~-~~l-~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~-~~Ga~GaRlT 248 (315)
+.+++|++||++||.||++|+++|+. .++ +.+|++.||+||++||.|||++|+|||||||.||+++. ..|++|||||
T Consensus 327 ~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlT 406 (468)
T PTZ00290 327 PGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMM 406 (468)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEe
Confidence 47899999999999999999999942 222 24569999999999999999999999999999999864 5699999999
Q ss_pred CCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEEEeecCC
Q psy7887 249 GAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCDEE 306 (315)
Q Consensus 249 GAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i~~~~~~ 306 (315)
|||||||+|+|++++.++++++++.+.|+++++. ++.+|+++|++||+++.++.-
T Consensus 407 GaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g~---~~~~~~~~~~~Ga~~~~~~~~ 461 (468)
T PTZ00290 407 GGGFGGCIILLLKKNAVDRVVAHVREKFKARFGV---ENDVYPVVAGDGAFVVSLKNW 461 (468)
T ss_pred cCCCceEEEEEechhhHHHHHHHHHHHHHHhhCC---CCcEEEEecCCCcEEEeeccc
Confidence 9999999999999999999999999999998775 468999999999999865443
No 6
>PRK05101 galactokinase; Provisional
Probab=99.97 E-value=3.6e-30 Score=252.36 Aligned_cols=147 Identities=28% Similarity=0.442 Sum_probs=133.0
Q ss_pred hhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHH
Q psy7887 140 SVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSL 219 (315)
Q Consensus 140 ~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SL 219 (315)
+++.+++..|++++.+++.... ..+. ..+++|++|+++|+.||.+++++| +++|++.||+||++||.+|
T Consensus 233 A~~~l~~~~l~~~~~~~~~~~~-----~~l~-~~~~~r~~h~i~E~~rv~~a~~al-----~~~d~~~lG~Lm~~sh~~l 301 (382)
T PRK05101 233 AARFFGVKALRDVTLEQFNAVA-----AELD-PVVAKRARHVITENARTLEAASAL-----AAGDLKRMGELMAESHASM 301 (382)
T ss_pred HHHHhChHhhhcCCHHHHHHHH-----hhCC-HHHHHHHHHHhHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHhHHH
Confidence 5778899999999988886543 1232 478999999999999999999998 7889999999999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHc-CC-ceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCc
Q psy7887 220 ATKYECSHEALDSLVTCFREA-GA-YGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTG 297 (315)
Q Consensus 220 r~lye~S~peLD~Lv~iA~~~-Ga-~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~G 297 (315)
|+.|+||||++|.|+++|+++ |+ +||||||||||||+|+|+|++.+++|+++|.+.|+++++. .+.+|+++|++|
T Consensus 302 r~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~G 378 (382)
T PRK05101 302 RDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAKTGL---KETFYVCKASQG 378 (382)
T ss_pred HhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhhCC---CCeEEEEecCCC
Confidence 999999999999999999997 97 5889999999999999999999999999999999998865 468999999999
Q ss_pred eEE
Q psy7887 298 AII 300 (315)
Q Consensus 298 A~i 300 (315)
+++
T Consensus 379 a~~ 381 (382)
T PRK05101 379 AGQ 381 (382)
T ss_pred ccc
Confidence 985
No 7
>PRK05322 galactokinase; Provisional
Probab=99.96 E-value=1.6e-29 Score=248.31 Aligned_cols=122 Identities=31% Similarity=0.478 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHH-HcCCceEEEeCC
Q psy7887 172 FKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFR-EAGAYGARLTGA 250 (315)
Q Consensus 172 ~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~-~~Ga~GaRlTGA 250 (315)
+.+++|++|++.|+.||.+++.+| ..+|++.||++|++||.+|++.|++|||++|.|+++|+ ..|++|+|||||
T Consensus 265 ~~~~~r~~h~v~e~~r~~~~~~al-----~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGa 339 (387)
T PRK05322 265 ETLLKRARHAVTENQRTLKAVKAL-----KAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGA 339 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecC
Confidence 478999999999999999999998 78999999999999999999999999999999999997 579999999999
Q ss_pred CCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEEE
Q psy7887 251 GWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIF 301 (315)
Q Consensus 251 GfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i~ 301 (315)
|||||+++|++.+..++|++.|.+.|+++++. .+.+|.++|++|++++
T Consensus 340 G~GG~vial~~~~~~~~~~~~l~~~y~~~~~~---~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 340 GFGGCAIAIVKKDKVEAFKENVGKAYEEKIGY---AASFYVAEIGDGAREL 387 (387)
T ss_pred CCceEEEEEEcHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCCCcccC
Confidence 99999999999999999999999999999865 4789999999999863
No 8
>PRK00555 galactokinase; Provisional
Probab=99.95 E-value=9.1e-28 Score=234.09 Aligned_cols=151 Identities=28% Similarity=0.396 Sum_probs=134.8
Q ss_pred hhhhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhH
Q psy7887 137 NTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSH 216 (315)
Q Consensus 137 ~~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH 216 (315)
...+++.++.+.+|++..+++... .. ..++..++|++|+++|+.||.+++.+| .++|++.||++|+++|
T Consensus 212 ~~~~~~~~~~~~lr~~~~~~~~~~--~~----~~~~~~~~r~~h~~~e~~~v~~~~~al-----~~gd~~~lg~lm~~~h 280 (363)
T PRK00555 212 CERAAADLGVSSLRAVQDRGLAAL--GA----IADPIDARRARHVLTENQRVLDFAAAL-----ADSDFTAAGQLLTASH 280 (363)
T ss_pred HHHHHHHhCccchhcCCHHHHHHH--Hh----cCChHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHhh
Confidence 345667788889999988876542 11 223578999999999999999999998 7899999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCC
Q psy7887 217 TSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQT 296 (315)
Q Consensus 217 ~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~ 296 (315)
.++|+.|+||||++|.|++.|++.|++|+||||||||||+++|++.+..+++.+.+++.|+++++. .+.+|+++|++
T Consensus 281 ~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~~~---~~~~~~~~~~~ 357 (363)
T PRK00555 281 ASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTAGYP---EPAVSRTYAAP 357 (363)
T ss_pred HHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHccCC---CCcEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999998776 47899999999
Q ss_pred ceEEE
Q psy7887 297 GAIIF 301 (315)
Q Consensus 297 GA~i~ 301 (315)
|++++
T Consensus 358 g~~~~ 362 (363)
T PRK00555 358 GAGEC 362 (363)
T ss_pred CcccC
Confidence 99864
No 9
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.95 E-value=1.9e-27 Score=232.67 Aligned_cols=149 Identities=28% Similarity=0.423 Sum_probs=128.9
Q ss_pred hhhhhcchh---hhhcCCHHHhhhh--hccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Q psy7887 139 RSVASFKVQ---EILEVSEEELDSD--ILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMN 213 (315)
Q Consensus 139 ~~a~~~gv~---~Lrdvs~eel~~~--~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~ 213 (315)
.+++.+++. .+|++.++++... .+. .+. ...++|++|+++|+.||.+++++| .++|++.||++|+
T Consensus 231 ~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~----~~~-~~~~~r~~h~v~e~~rv~~~~~al-----~~~d~~~lG~lm~ 300 (386)
T TIGR00131 231 TAANFLAATDKGALRDFMNEYFARYIARLT----KML-PLVEERAKHVVSENLRVLKAVKAM-----KDNDFKQFGALMN 300 (386)
T ss_pred HHHHHhccccccchhhCCHHHHhhhHhhHh----hcC-HHHHhhHheeehHHHHHHHHHHHH-----HhCcHHHHHHHHH
Confidence 367777766 8999998887631 122 222 357889999999999999999998 7899999999999
Q ss_pred HhHHHHhhcCCCCChHHHHHHHHH-HHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEe
Q psy7887 214 QSHTSLATKYECSHEALDSLVTCF-REAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTT 292 (315)
Q Consensus 214 ~SH~SLr~lye~S~peLD~Lv~iA-~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t 292 (315)
+||.||+++|+||||++|.+++.+ +..|++||||||||||||+|+|++++.+++|+++|.+.|+++++. ++.+|++
T Consensus 301 ~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~~~~---~~~~~~~ 377 (386)
T TIGR00131 301 ESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKKTGL---ELTFYVI 377 (386)
T ss_pred HhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhhCC---CCcEEEE
Confidence 999999999999999999999876 667999999999999999999999999999999999999887664 4679999
Q ss_pred eCCCceEE
Q psy7887 293 KPQTGAII 300 (315)
Q Consensus 293 ~p~~GA~i 300 (315)
++++|++.
T Consensus 378 ~~~~Ga~~ 385 (386)
T TIGR00131 378 VSKPGAGS 385 (386)
T ss_pred EECCCcCC
Confidence 99999863
No 10
>PRK03817 galactokinase; Provisional
Probab=99.92 E-value=5.2e-24 Score=205.70 Aligned_cols=145 Identities=33% Similarity=0.460 Sum_probs=128.9
Q ss_pred hhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHH
Q psy7887 139 RSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTS 218 (315)
Q Consensus 139 ~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~S 218 (315)
++++.++...+++++.+++.. + . ..+++|+.|++.|+.||.+++.++ .++|++.||++|++||.+
T Consensus 206 ~~~~~l~~~~~~~~~~~~~~~--l-------~-~~~~~~~~~~v~e~~r~~~~~~al-----~~~d~~~lg~l~~~s~~~ 270 (351)
T PRK03817 206 EALKILGKKSSKEVTEEDLSK--L-------P-PLLRKRAGYVLRENERVLKVRDAL-----KEGDIETLGELLTESHWD 270 (351)
T ss_pred HHHHHhCccchhcCCHHHHHh--C-------C-HHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHH
Confidence 566777777788888776542 1 1 358899999999999999999998 789999999999999999
Q ss_pred HhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCce
Q psy7887 219 LATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298 (315)
Q Consensus 219 Lr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA 298 (315)
+++.|++|||++|.|+++|+++|++|+||||||||||+++|++++..+++++.+++.|.+.++. .+.+|.+.|++|+
T Consensus 271 l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~G~ 347 (351)
T PRK03817 271 LADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKKRFGI---DPKYFVVESSDGV 347 (351)
T ss_pred HHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999887655 3579999999999
Q ss_pred EEE
Q psy7887 299 IIF 301 (315)
Q Consensus 299 ~i~ 301 (315)
+++
T Consensus 348 ~~~ 350 (351)
T PRK03817 348 RKI 350 (351)
T ss_pred eeC
Confidence 875
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.52 E-value=5.3e-14 Score=135.38 Aligned_cols=76 Identities=34% Similarity=0.540 Sum_probs=65.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhc
Q psy7887 200 SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTD 279 (315)
Q Consensus 200 l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~ 279 (315)
+..+|.+.||++|+.+|..|..+. +|+|+||+||+.++++|++|||+||||+|||+|+|++.... .+.+....++.
T Consensus 220 l~~~d~e~lgelm~~nq~LL~~Lg-Vs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~~---~~~l~~~~~~~ 295 (307)
T COG1577 220 LQTGDFEELGELMNINQGLLKALG-VSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEI---AETLSNRLEKA 295 (307)
T ss_pred HhcccHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccchH---HHHHHHHHHhc
Confidence 578999999999999999999999 69999999999999999999999999999999999986221 34444444443
No 12
>PTZ00298 mevalonate kinase; Provisional
Probab=99.52 E-value=1.6e-13 Score=132.16 Aligned_cols=86 Identities=33% Similarity=0.465 Sum_probs=75.4
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcHH
Q psy7887 188 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSCE 266 (315)
Q Consensus 188 V~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~~ 266 (315)
+.++..++ ..+|++.||++|+++|..++.. .+|+|++|.+++.++++|++|+||||+|+|||+++|++. +.++
T Consensus 227 ~~~~~~al-----~~~d~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~ 300 (328)
T PTZ00298 227 VSEAKEAL-----QKGNLFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRD 300 (328)
T ss_pred HHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHH
Confidence 44555565 6789999999999999999965 579999999999999999999999999999999999975 6778
Q ss_pred HHHHHHHHHhhhc
Q psy7887 267 ALVTQVQAKFYTD 279 (315)
Q Consensus 267 ~~ie~l~~~Y~~~ 279 (315)
++.+.+++.|...
T Consensus 301 ~~~~~l~~~~~~~ 313 (328)
T PTZ00298 301 AIAKAVRARCPEA 313 (328)
T ss_pred HHHHHHHHHhhhc
Confidence 8999999888765
No 13
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.50 E-value=5.8e-14 Score=108.14 Aligned_cols=77 Identities=30% Similarity=0.477 Sum_probs=68.7
Q ss_pred hhhhHHHHHHHHHHhHHH-HhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEec-cCCcHHHHHHHHHHHhh
Q psy7887 201 EEQKLQQLGTLMNQSHTS-LATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALS-DKSSCEALVTQVQAKFY 277 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~S-Lr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv-~~~~~~~~ie~l~~~Y~ 277 (315)
..+|++.|+++|+++|.+ ......+.+|+++.+++.+++.|++|++|||+|||||+++|+ +++.++++.+++++.|+
T Consensus 6 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 6 AEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALREHYK 84 (85)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHHHHTH
T ss_pred HCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 789999999999999986 222456688999999999999999999999999999999999 66888999999988875
No 14
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.44 E-value=2.6e-13 Score=125.84 Aligned_cols=68 Identities=41% Similarity=0.600 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEe
Q psy7887 186 YRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL 259 (315)
Q Consensus 186 ~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaL 259 (315)
.++.++..++ ..+|++.||++|+++|..++. +.+|||++|.|++.+++.|++|+||||||+|||+++|
T Consensus 206 ~~~~~~~~al-----~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAAL-----QDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 3666677776 789999999999999999987 4789999999999999999999999999999999986
No 15
>PRK03926 mevalonate kinase; Provisional
Probab=99.43 E-value=2.3e-12 Score=121.65 Aligned_cols=92 Identities=33% Similarity=0.415 Sum_probs=78.5
Q ss_pred hhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhcc
Q psy7887 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQ 280 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~ 280 (315)
.++|++.||++|+++|..+ +.+.+++|++|.+++.+++.|++|+||||+|+|||+++|++++..+++.+.+.+.+
T Consensus 209 ~~~d~~~l~~~~~~~~~~~-~~~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~~---- 283 (302)
T PRK03926 209 LSGDYVSLGELMNINQGLL-DALGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPEKQSEVATAIKIAG---- 283 (302)
T ss_pred hcCCHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEeccccHHHHHHHHHhcC----
Confidence 6789999999999999655 45678999999999999999999999999999999999999888888888887631
Q ss_pred CCCCCCCeEEEeeCC-CceEEEee
Q psy7887 281 RTSSKPDLIFTTKPQ-TGAIIFQC 303 (315)
Q Consensus 281 ~~~~~~~~vf~t~p~-~GA~i~~~ 303 (315)
..++++++. .|+.+..+
T Consensus 284 ------~~~~~~~~~~~G~~i~~~ 301 (302)
T PRK03926 284 ------GKPIITKITDEGLRIEEV 301 (302)
T ss_pred ------CeEEEEecCCCeeEEEec
Confidence 256888874 69887654
No 16
>PLN02677 mevalonate kinase
Probab=99.41 E-value=3e-12 Score=126.76 Aligned_cols=92 Identities=26% Similarity=0.333 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCC
Q psy7887 203 QKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRT 282 (315)
Q Consensus 203 ~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~ 282 (315)
+|++.||++|+.+|..|+.+. +|+|+||.+|+++++.| +|||+||||+|||+|+|++++..++.++.+.+++.+.. +
T Consensus 291 ~~~~~Lg~lm~~N~~LL~~LG-VS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~G-~ 367 (387)
T PLN02677 291 EKEEKLKELMEMNQGLLQCMG-VSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESSG-F 367 (387)
T ss_pred chHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEcccccchhHHHHHHHHHHHCC-C
Confidence 579999999999999999998 69999999999999995 79999999999999999986444444455555555442 2
Q ss_pred CCCCCeEEEeeCC-CceEEEe
Q psy7887 283 SSKPDLIFTTKPQ-TGAIIFQ 302 (315)
Q Consensus 283 ~~~~~~vf~t~p~-~GA~i~~ 302 (315)
.+|.++++ .|+.+..
T Consensus 368 -----~~~~~~~g~~Gv~~~~ 383 (387)
T PLN02677 368 -----QCFTAGIGGNGVQICY 383 (387)
T ss_pred -----eEEEEEeCCCceEEEe
Confidence 46777755 5887763
No 17
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.28 E-value=2e-11 Score=119.21 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=63.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHhhc-----CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC-cHHHHHHHHH
Q psy7887 200 SEEQKLQQLGTLMNQSHTSLATK-----YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQ 273 (315)
Q Consensus 200 l~~~d~~~LG~LM~~SH~SLr~l-----ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~ 273 (315)
+..+|++.||++|+++|..|+.+ ..+|+|++|.|++.++++|+ |+|+||||+|||+++|++.+ ..+++.++|+
T Consensus 265 l~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~ 343 (358)
T TIGR01220 265 FETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-AAKPSGAGGGDCGIAILDAEADITHVRQRWE 343 (358)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHH
Confidence 37899999999999999999987 36799999999999999997 99999999999999999754 3444555555
Q ss_pred H
Q psy7887 274 A 274 (315)
Q Consensus 274 ~ 274 (315)
+
T Consensus 344 ~ 344 (358)
T TIGR01220 344 T 344 (358)
T ss_pred H
Confidence 4
No 18
>KOG1511|consensus
Probab=99.21 E-value=2e-10 Score=111.73 Aligned_cols=90 Identities=26% Similarity=0.402 Sum_probs=80.3
Q ss_pred HHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCC
Q psy7887 207 QLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKP 286 (315)
Q Consensus 207 ~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~ 286 (315)
+|.+||..+|..|..++. |||.+|.++..+++.| +++||||||.|||+++|++++..++.++.++++...+ ++
T Consensus 293 ~L~eLi~iNq~LL~alGV-sH~~le~v~~~t~k~g-i~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~-gf---- 365 (397)
T KOG1511|consen 293 KLEELIRINQDLLDALGV-SHPSLELVCTTTRKLG-IHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESH-GF---- 365 (397)
T ss_pred HHHHHHHHhHHHHHHhCC-CcHHHHHHHHHHHHhC-cceecccCCCCceEEEEECCCCchHHHHHHHHHHHhc-Cc----
Confidence 699999999999999985 9999999999999998 7899999999999999999999899999999998887 33
Q ss_pred CeEEEeeCC-CceEEEeec
Q psy7887 287 DLIFTTKPQ-TGAIIFQCD 304 (315)
Q Consensus 287 ~~vf~t~p~-~GA~i~~~~ 304 (315)
.+|.+..| .|+++...+
T Consensus 366 -~v~~t~lGG~G~~v~s~~ 383 (397)
T KOG1511|consen 366 -EVFETELGGPGVSVHSAD 383 (397)
T ss_pred -ceeeccCCCCceEEEecc
Confidence 58888755 599887644
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.19 E-value=1.6e-10 Score=125.06 Aligned_cols=74 Identities=15% Similarity=0.333 Sum_probs=64.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHhhc-CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEecc-CCcHHHHHHHHHH
Q psy7887 200 SEEQKLQQLGTLMNQSHTSLATK-YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSD-KSSCEALVTQVQA 274 (315)
Q Consensus 200 l~~~d~~~LG~LM~~SH~SLr~l-ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~-~~~~~~~ie~l~~ 274 (315)
+..+|++.||+||+++|..++.+ -.+|+|++|.|++.|++ |++|+|+||||+|||+++|++ ++..+++.+++++
T Consensus 875 Le~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~~ 950 (974)
T PRK13412 875 IQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILTE 950 (974)
T ss_pred HHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECChhhHHHHHHHHHh
Confidence 37899999999999999999988 34699999999999965 799999999999999999995 5566677777765
No 20
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.08 E-value=5e-10 Score=106.98 Aligned_cols=76 Identities=22% Similarity=0.432 Sum_probs=71.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHhhc-CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHH
Q psy7887 200 SEEQKLQQLGTLMNQSHTSLATK-YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAK 275 (315)
Q Consensus 200 l~~~d~~~LG~LM~~SH~SLr~l-ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~ 275 (315)
+-.+|+..||++|+.+|+.-+.+ -.+|+|.+|+|.+.|+++|++|+|+.|||.||.++.+|+|.+..+++++|+..
T Consensus 237 l~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~~ 313 (333)
T COG2605 237 LVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNELARALEKE 313 (333)
T ss_pred HHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccchHHHHHHHHHh
Confidence 46789999999999999998887 47899999999999999999999999999999999999999999999999874
No 21
>PLN02451 homoserine kinase
Probab=98.66 E-value=2.2e-07 Score=91.70 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHh--HHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC
Q psy7887 185 AYRVERFLSVCRSDISEEQKLQQLGTLMNQS--HTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK 262 (315)
Q Consensus 185 a~RV~~~~~al~~~~l~~~d~~~LG~LM~~S--H~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~ 262 (315)
..|+...+.++ ..+|++.+|.+|+.. |+..+. . ++|+++++++.++++|++|++|||+| .|+++|++.
T Consensus 258 ~~~~~~l~~al-----~~~d~~~l~~~m~nD~~~e~~r~--~-~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~ 327 (370)
T PLN02451 258 CSQAAALVAAI-----LQGDAVLLGEALSSDKIVEPTRA--P-LIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDD 327 (370)
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhHHHHh--h-hCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcC
Confidence 34444445554 788999999999865 555553 3 67999999999999999999999988 689999975
Q ss_pred -CcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCC-ceEEEe
Q psy7887 263 -SSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQT-GAIIFQ 302 (315)
Q Consensus 263 -~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~-GA~i~~ 302 (315)
+.++++.+++++.|.+..+. ...++++++.. |+++..
T Consensus 328 ~~~a~~i~~~l~~~~~~~~~~---~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 328 EEKGEEVGERMVEAFRKAGNL---KATASVKKLDRVGARLVE 366 (370)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---CceEEEeccCCCCeEEEe
Confidence 46788999998888665332 24688888775 987753
No 22
>PRK01212 homoserine kinase; Provisional
Probab=98.64 E-value=1.9e-07 Score=88.42 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH-hHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEe
Q psy7887 181 VYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQ-SHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL 259 (315)
Q Consensus 181 V~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~-SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaL 259 (315)
.+.+..|+..+..++ .++|++.+|++|+. -|+..+.. .+|+++.+.+.+++.|++|++|+|+| +|+++|
T Consensus 194 ~~~~~~~~~~l~~al-----~~~d~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l 263 (301)
T PRK01212 194 AVFNSSRAALLVAAL-----YTGDYELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG--PTVFAL 263 (301)
T ss_pred HHHHHHHHHHHHHHH-----hhCCHHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh--hheeEE
Confidence 444566777777776 77899999999843 35555322 45999999999999999999999976 999999
Q ss_pred ccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCC-ceEE
Q psy7887 260 SDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQT-GAII 300 (315)
Q Consensus 260 v~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~-GA~i 300 (315)
++.+..+++.+.+++.| .. +. ...+++++++. |+++
T Consensus 264 ~~~~~~~~~~~~l~~~~-~~-~~---~~~~~~~~~~~~G~~~ 300 (301)
T PRK01212 264 CDKEDAEKVADALQKAF-LQ-GI---EGFVHVLRLDTAGARV 300 (301)
T ss_pred eccccHHHHHHHHHHhh-cc-CC---CeEEEEeccCCCceEe
Confidence 98766688888888876 22 22 24688888776 8765
No 23
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=98.11 E-value=1.8e-05 Score=75.40 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHh--HHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC
Q psy7887 186 YRVERFLSVCRSDISEEQKLQQLGTLMNQS--HTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS 263 (315)
Q Consensus 186 ~RV~~~~~al~~~~l~~~d~~~LG~LM~~S--H~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~ 263 (315)
.|+..+..++ .+++. .++.++... |+..+. ..+|+++.+++.+++.|++|++|+|+| +|+++|++++
T Consensus 199 ~~~~~l~~al-----~~~~~-~l~~~~~~d~l~e~~~~---~l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~ 267 (302)
T TIGR00191 199 SHLAGLVHAI-----YQKKP-DLGAIMMKDRIHQPYRE---SLIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEE 267 (302)
T ss_pred HHHHHHHHHH-----HcCCH-HHHHHHcccccchhhHh---hhCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecch
Confidence 3444444554 44444 467776554 566664 247999999999999999999999999 9999999876
Q ss_pred cHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCC-ceEE
Q psy7887 264 SCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQT-GAII 300 (315)
Q Consensus 264 ~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~-GA~i 300 (315)
...+.+..+.+.++... . ...++++++.. |+++
T Consensus 268 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 268 FAEQKEQDLLEVLHKQG-I---EGTVHVLDFDNDGARV 301 (302)
T ss_pred hhHHHHHHHHHHHHhcC-C---CeEEEEcccCCCCeEe
Confidence 65544444443333322 1 24688888765 8764
No 24
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.98 E-value=2.7e-05 Score=74.07 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=66.8
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCC-CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcH
Q psy7887 188 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYEC-SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSC 265 (315)
Q Consensus 188 V~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~-S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~ 265 (315)
+..+..++ .++|++.+|++|...-+. +.. .+|+++++++.+++.|++|++|||+| .++++|++. +.+
T Consensus 198 ~~~~~~al-----~~~d~~~l~~~~~n~le~----~~~~~~p~l~~l~~~~~~~Galga~lSGsG--~tv~~l~~~~~~~ 266 (300)
T PRK03188 198 PDPLLAAL-----RAGDPAQLAPLLGNDLQA----AALSLRPSLRRTLRAGEEAGALAGIVSGSG--PTCAFLCADADSA 266 (300)
T ss_pred HHHHHHHH-----HcCCHHHHHHHhhCcCHH----HHHHhCchHHHHHHHHHHCCCCEEEEEccc--cceEEEeCCHHHH
Confidence 44455555 788999999998632222 222 48999999999999999999999988 456777875 445
Q ss_pred HHHHHHHHHHhhhccCCCCCCCeEEEee-CCCceEEEe
Q psy7887 266 EALVTQVQAKFYTDQRTSSKPDLIFTTK-PQTGAIIFQ 302 (315)
Q Consensus 266 ~~~ie~l~~~Y~~~~~~~~~~~~vf~t~-p~~GA~i~~ 302 (315)
+++.+.+++. +. ...+++++ ...|++++.
T Consensus 267 ~~~~~~l~~~-----g~---~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 267 VDVAAALSGA-----GV---CRTVRVATGPVPGARVVS 296 (300)
T ss_pred HHHHHHHHhc-----Cc---ceeEEEeeccccceEecc
Confidence 6666666552 11 13566655 556888764
No 25
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.93 E-value=1.7e-05 Score=74.75 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcHHHHHHHHHHH
Q psy7887 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSCEALVTQVQAK 275 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~~~~ie~l~~~ 275 (315)
..+|++.+|.+|.. .+.....-.+|+++++++.+++.|++|++|||+| +|+++|++. +..+++.+++++.
T Consensus 202 ~~~d~~~~~~~~~n---~l~~~~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~~ 272 (286)
T PRK00128 202 EEGDYQGICANMGN---VLENVTLKKYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFDDESRAQRIYNGLKGF 272 (286)
T ss_pred hcCCHHHHHHhccC---cHHHHHHhhChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHhh
Confidence 77899999999863 2322222237999999999999999999999998 999999976 3567777777653
No 26
>PTZ00299 homoserine kinase; Provisional
Probab=97.89 E-value=6.9e-05 Score=73.41 Aligned_cols=108 Identities=20% Similarity=0.201 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhh-cCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEe
Q psy7887 181 VYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLAT-KYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL 259 (315)
Q Consensus 181 V~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~-lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaL 259 (315)
.+....|+--++.++ ..+|++.+..+...-|+..|. .. .|+++.+.+.+.++|++|+-|+|+| .++++|
T Consensus 202 av~n~~~~~~lv~al-----~~~d~~ll~~~~D~lhep~R~~~l---iP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al 271 (336)
T PTZ00299 202 AVFNISRTSILVLAL-----STGDLRMLKSCSDKLHEQQRSDAL---FPHFRPCVKAAREAGAHYAFLSGAG--PSVCAL 271 (336)
T ss_pred HHHhhhHHHHHHHHH-----HhCCHHHHHhchhcccCccccccc---CccHHHHHHHHHHCCCeEEEEEchh--hhheEE
Confidence 334455555455665 788999886543336776553 22 4899999999999999999999998 999999
Q ss_pred ccC------------CcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCC-ceEEEe
Q psy7887 260 SDK------------SSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQT-GAIIFQ 302 (315)
Q Consensus 260 v~~------------~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~-GA~i~~ 302 (315)
++. +..+++.++|.+.|.+... ...++++.++. |+++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 272 VGGRHGDPLTQPREERKAESVAEAMIKAAEAVGV----AGRVIITQPSDQGVHLVG 323 (336)
T ss_pred eccccccccccccchhHHHHHHHHHHHHHHHcCC----ceEEEEccCCCCCcEEEe
Confidence 973 3367899999998866532 25788999886 998874
No 27
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=97.79 E-value=7.6e-05 Score=70.23 Aligned_cols=63 Identities=24% Similarity=0.206 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHH
Q psy7887 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~ 274 (315)
..+++. ++|+.+|..+.....++++ ++..+++.|++|++|||+ |||+++|+++. +++.+++++
T Consensus 191 ~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~~Galga~lSGa--G~sv~aL~~~~--~~v~~~~~~ 253 (261)
T TIGR01920 191 LRGEYL---KAMVLNGVAYATALGYPLE----PASKALEAGAAAAGLSGK--GPSYFALTEDP--EEAAEALME 253 (261)
T ss_pred hhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHHcCCcEEeecCC--CCeEEEEeCCH--HHHHHHHHh
Confidence 445554 8899999766344444553 567799999999999997 69999998755 677777766
No 28
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.77 E-value=7.4e-05 Score=71.60 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHH-HcCCceEEEeCCCCcceEEEeccCC-cHHHHHHHHHHHhhh
Q psy7887 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFR-EAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQAKFYT 278 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~-~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~~~Y~~ 278 (315)
..+|++.++..| |+.++....-.+|++.++++.++ ++|++|+.|||+| +|+++|++.. .++++.+++++.|..
T Consensus 219 ~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~~~~ 293 (312)
T PRK02534 219 SAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVREAFAD 293 (312)
T ss_pred hccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHHhcc
Confidence 678899888766 66666654446799999999888 8999999999987 9999999863 567778888775432
Q ss_pred ccCCCCCCCeEEEeeCCC-ceEE
Q psy7887 279 DQRTSSKPDLIFTTKPQT-GAII 300 (315)
Q Consensus 279 ~~~~~~~~~~vf~t~p~~-GA~i 300 (315)
.. ..++++++.. |+.+
T Consensus 294 ~~------~~v~i~~~~n~G~~v 310 (312)
T PRK02534 294 PG------LDAWVCQFISHGIQL 310 (312)
T ss_pred Cc------eEEEEEEecCCCcee
Confidence 21 1477777654 8754
No 29
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=97.77 E-value=0.00026 Score=68.48 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHH-hHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEecc
Q psy7887 183 EEAYRVERFLSVCRSDISEEQKLQQLGTLMNQ-SHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSD 261 (315)
Q Consensus 183 ~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~-SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~ 261 (315)
.-..|+--++.+| .++|.+.+...|++ -|+..|.-+. |.++++.+.+.++|+||+-++||| .+++++++
T Consensus 192 ~n~s~~a~lv~al-----~~~~~~l~~~~~~D~ihepyR~~L~---P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~ 261 (299)
T COG0083 192 FNLSRAALLVAAL-----LEGDPELLRAMMKDVIHEPYRAKLV---PGYAEVREAALEAGALGATLSGAG--PTVFALAD 261 (299)
T ss_pred HHHHHHHHHHHHH-----HcCCHHHHHHHhccccchhhhhhhC---ccHHHHHHHHhhCCceEEEEecCC--CeEEEEec
Confidence 3355666666666 67886666666665 7999998887 999999999999999999999998 99999998
Q ss_pred CCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEEE
Q psy7887 262 KSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIF 301 (315)
Q Consensus 262 ~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i~ 301 (315)
.. ..+-+..+.+.++++.+. ....+...+++|++++
T Consensus 262 ~~-~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~v 297 (299)
T COG0083 262 ES-DAEKAAALLEELYEQGIK---GRVHILALDSDGARVV 297 (299)
T ss_pred cc-hhhHHHHHHHHHHHhCCc---ceEEEEeecCCcceEe
Confidence 87 444555555556665433 1234455577887765
No 30
>PRK01123 shikimate kinase; Provisional
Probab=97.50 E-value=0.00062 Score=64.50 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCC
Q psy7887 208 LGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPD 287 (315)
Q Consensus 208 LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~ 287 (315)
++.+|+.++...|.....+ +.++..+++.|++|++++|+ |||+++|++.+..+++.++|++. .
T Consensus 205 l~~~~~~~~l~~~~~l~~~----~~~i~~a~~~Ga~ga~lSGa--Gptv~al~~~~~~~~v~~~l~~~-----------~ 267 (282)
T PRK01123 205 YFKAMTLNGLLYSSALGFP----TEPALEALEAGAVGVGLSGT--GPSYVAIVDEEDPEEVKEAWEKY-----------G 267 (282)
T ss_pred HHHHHHhCCchhhhhhCCC----hHHHHHHHHCCCeEEEEecC--CCeEEEEeCCCCHHHHHHHHHhC-----------C
Confidence 3577777654443333323 34466678899999999985 69999999988888888888873 1
Q ss_pred eEEEeeCC-CceEE
Q psy7887 288 LIFTTKPQ-TGAII 300 (315)
Q Consensus 288 ~vf~t~p~-~GA~i 300 (315)
.+++++++ .|+.+
T Consensus 268 ~~~~~~~~~~G~~v 281 (282)
T PRK01123 268 KVIVTKINNEGARI 281 (282)
T ss_pred EEEEeeecCCCcee
Confidence 46777765 57654
No 31
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.46 E-value=0.00015 Score=68.69 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCc-HHHHHHHHHH
Q psy7887 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSS-CEALVTQVQA 274 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~-~~~~ie~l~~ 274 (315)
.+|+++.+++.+++.|++|++|||+| ||+++|++.+. .+++.+.+++
T Consensus 221 ~~p~l~~i~~~~~~~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 221 RFPVIGEIKEELLAAGARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred cChHHHHHHHHHHhCCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 47999999999999999999999997 99999998765 5666666666
No 32
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.46 E-value=0.00032 Score=67.26 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=55.8
Q ss_pred hhhhHHHHHH-HHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcHHHHHHHHHHHhhh
Q psy7887 201 EEQKLQQLGT-LMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSCEALVTQVQAKFYT 278 (315)
Q Consensus 201 ~~~d~~~LG~-LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~~~~ie~l~~~Y~~ 278 (315)
..+|++.++. ++|.-+.....+ +|+++++.+.+++.|++|++|||+| +|+++|++. +.++++.+.+++.|..
T Consensus 216 ~~~~~~~l~~~l~ndle~~~~~l----~P~~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~~~~~~ 289 (297)
T PRK14613 216 KVGDWVSLQGRLENDFEPVAFQL----HPELGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLRQEFSN 289 (297)
T ss_pred HcCCHHHHHHHhcccchHHHHHh----CcHHHHHHHHHHHcCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHHhhcc
Confidence 5678877744 456664444443 5899999999999999999999995 999999986 5667888888776543
No 33
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=97.04 E-value=0.001 Score=63.60 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=46.2
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCc-HHHHHHHHHHHhh
Q psy7887 216 HTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSS-CEALVTQVQAKFY 277 (315)
Q Consensus 216 H~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~-~~~~ie~l~~~Y~ 277 (315)
|..++....-++|+++++++.++++|++|++|||+| +|+++|++... +..+.+.+++.+.
T Consensus 216 ~ndle~~~~~~~p~l~~i~~~l~~~Ga~~a~mSGSG--~tvf~l~~~~~~a~~~~~~~~~~~~ 276 (293)
T TIGR00154 216 LNDLEKVALKRHTEVAQALNWLLEYGLAPERLSGSG--ACVFALFDMESEAEQVLEQAPEWLN 276 (293)
T ss_pred cCccHHHHHhcCHHHHHHHHHHHhCCCCeEEEeccc--cceEEEeCCHHHHHHHHHHhHHHhh
Confidence 445554433478999999999999999999999995 99999998643 5666666665443
No 34
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.94 E-value=0.0022 Score=60.88 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcHHHHHHHHHHHhhhc
Q psy7887 202 EQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSCEALVTQVQAKFYTD 279 (315)
Q Consensus 202 ~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~~~~ie~l~~~Y~~~ 279 (315)
.++++.++.++|+- +..|.. -.|+++++.+.+++.|++|+.|||+| .++++|++. +.++++.+.+++.|...
T Consensus 205 ~~~~~l~~~~~nD~-e~~~~~---l~p~l~~v~~~~~~~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l~~~~~~~ 277 (287)
T PRK14616 205 DGDTSVLPAFENDF-ESAVFD---HYPAVRKVKDDLLEAGSFFASLSGSG--SAVFGLFENEADAEAAAEMMRARYRTN 277 (287)
T ss_pred CCHHHHHHHhcCcc-HHHHHH---hChHHHHHHHHHHhCCCCeEEEeccc--ccceEEeCCHHHHHHHHHHhHHhCccc
Confidence 34566666666644 333322 24999999999999999999999999 799999976 56788888888876543
No 35
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.75 E-value=0.002 Score=61.76 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcHHHHHHHHHH
Q psy7887 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSCEALVTQVQA 274 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~~~~ie~l~~ 274 (315)
++|+++++.+.++++|++|++|||+| +|+++|++. +.++++.+++++
T Consensus 239 l~P~l~~~~~~~~~~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 239 AHPELRRLKETLLRHGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred hChHHHHHHHHHHhcCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhh
Confidence 68999999999999999999999999 999999875 445667777665
No 36
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=96.74 E-value=0.027 Score=54.55 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHHHhHHHH---hhc--CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHH
Q psy7887 201 EEQKLQQLGTLMNQSHTSL---ATK--YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAK 275 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~SL---r~l--ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~ 275 (315)
-++|++.||+-|++-|... -+- ...-|+.+..+++.+.++ +|||=++ -||..+.++++..........+.+.
T Consensus 212 vE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~~~~~~~~~~~~~ 288 (312)
T COG1907 212 VERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSREAGSVVRKLIDI 288 (312)
T ss_pred HhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEeccccccchHHHHHHHH
Confidence 7899999999999988776 332 234578899999999999 7876664 5999999999988777667777776
Q ss_pred hhhccCCCCCCCeEEEeeCCC-ceEEE
Q psy7887 276 FYTDQRTSSKPDLIFTTKPQT-GAIIF 301 (315)
Q Consensus 276 Y~~~~~~~~~~~~vf~t~p~~-GA~i~ 301 (315)
+.+.... ..+++|+|.+ ||.++
T Consensus 289 ~~~~g~~----gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 289 LLEEGIG----GEVFVTKARNRGAEIL 311 (312)
T ss_pred HHhcCCc----eEEEEeccCCCCceec
Confidence 6655432 5799999875 88764
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.58 E-value=0.0029 Score=59.70 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC-cHHHHHHHHHHHh
Q psy7887 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQAKF 276 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~~~Y 276 (315)
.+|+++++.+.++++|++|+.|||+| +|+++|++.+ .++++.+.+++.|
T Consensus 216 ~~p~l~~i~~~l~~~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~~~l~~~~ 265 (276)
T PRK14612 216 RHPELQEVLAALRAAGLRGVLMSGSG--STCFGLAEDAAQAQRAAAALRARH 265 (276)
T ss_pred hChHHHHHHHHHHhCCCCEEEEcCcc--hhhEEEeCCHHHHHHHHHHhHhhC
Confidence 67999999999999999999999988 8999999754 4677777777644
No 38
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=96.57 E-value=0.033 Score=54.25 Aligned_cols=91 Identities=23% Similarity=0.274 Sum_probs=61.6
Q ss_pred hhhhHHHHHHHHHHhHHHHhhcCC--CCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 201 EEQKLQQLGTLMNQSHTSLATKYE--CSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~SLr~lye--~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..+|++.|++.|++-+..--+..+ .-.|.+..+++.++. ++|+-|+| ||.++++|++.+ .+++.+++.+.|..
T Consensus 230 ~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~--a~g~~iSG--sGPTv~al~~~~-~~~~~~~~~~~~~~ 304 (324)
T TIGR00144 230 VEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS--APGAGMSS--FGPTVYAVTDEK-PGNIAGAVADIFGP 304 (324)
T ss_pred HhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh--ccCceecC--CCCeEEEEecCc-hHHHHHHHHHHhhh
Confidence 789999999999874422111000 125677777776654 48888876 559999999864 67778888886644
Q ss_pred ccCCCCCCCeEEEeeCCC-ceEE
Q psy7887 279 DQRTSSKPDLIFTTKPQT-GAII 300 (315)
Q Consensus 279 ~~~~~~~~~~vf~t~p~~-GA~i 300 (315)
. +. ...++++.+.. |+++
T Consensus 305 ~-~~---~~~~~~~~~~n~Ga~v 323 (324)
T TIGR00144 305 Y-GV---YGRIIVTKARNRGAFI 323 (324)
T ss_pred C-CC---ceEEEEEccCCCCCEe
Confidence 3 22 24688888774 8876
No 39
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=96.43 E-value=0.032 Score=57.05 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhHHHHhhcCC-----CCChHHHHHHHHHHHc-CCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhh
Q psy7887 204 KLQQLGTLMNQSHTSLATKYE-----CSHEALDSLVTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFY 277 (315)
Q Consensus 204 d~~~LG~LM~~SH~SLr~lye-----~S~peLD~Lv~iA~~~-Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~ 277 (315)
++..+...|..+-..||.+.+ +=+|++-.|++.+.+. |++|++..|||+|-|+++|+..+. ++++.+.+.+.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 677788888888888887653 3468899999999886 899999999999999999986543 24555555553
No 40
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.05 E-value=0.0036 Score=59.25 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcHHH
Q psy7887 216 HTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSCEA 267 (315)
Q Consensus 216 H~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~~~ 267 (315)
|..++......+|+++++.+.+++.|++|++|||+| +|+++|++. +.+++
T Consensus 208 ~Ndle~~~~~~~p~l~~i~~~l~~~ga~~~~mSGSG--~tvf~l~~~~~~~~~ 258 (269)
T PRK14609 208 VNDFEDSVFPKYPEIAEIKEKLYRSGALYAAMSGSG--SSVFGIFKKPPNLDE 258 (269)
T ss_pred CCChHHHHHHcChHHHHHHHHHHhCCCCeEEEeCcc--ceeEEEECChHHcCc
Confidence 444444333368999999999999999999999996 999999974 33444
No 41
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.76 E-value=0.014 Score=55.72 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHc-CCceEEEeCCCCcceEEEeccCC-cHHHHHHHHHHH
Q psy7887 226 SHEALDSLVTCFREA-GAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQAK 275 (315)
Q Consensus 226 S~peLD~Lv~iA~~~-Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~~~ 275 (315)
.+|+++.+.+.++++ |++|+.|||+| .++++|++.+ .++++.+.+++.
T Consensus 229 l~p~l~~i~~~~~~~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~~ 278 (290)
T PRK14608 229 LAPVIGEVLAALRAQPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAAA 278 (290)
T ss_pred cCcHHHHHHHHHHhcCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHhh
Confidence 479999999999999 99999999999 9999998753 466777777653
No 42
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=93.72 E-value=0.12 Score=49.37 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHH-cCCceEEEeCCCCcceEEEeccC-CcHHHHHHHHHHH
Q psy7887 227 HEALDSLVTCFRE-AGAYGARLTGAGWGGCVVALSDK-SSCEALVTQVQAK 275 (315)
Q Consensus 227 ~peLD~Lv~iA~~-~Ga~GaRlTGAGfGGcvvaLv~~-~~~~~~ie~l~~~ 275 (315)
+|+++++.+.+++ .|+++++|||+| .|+++|++. +..+++.+.+++.
T Consensus 222 ~P~l~~~~~~l~~~~ga~~a~mSGSG--sTvf~l~~~~~~a~~~~~~l~~~ 270 (283)
T PRK14610 222 VPEIEEILFVLESLEGCILSRMSGSG--ATCFALFEEEEAAEAAARYLKMT 270 (283)
T ss_pred ChHHHHHHHHHHhcCCCceEEEeCcc--cceeEEeCCHHHHHHHHHHhhhh
Confidence 7999999998876 489999999999 799999876 4556677666653
No 43
>KOG1537|consensus
Probab=91.63 E-value=0.59 Score=45.23 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhh-hhHHHHHHHHHH-hHHHHhhcCCCCChHHHHHHHHHHHc---CCceEEEe
Q psy7887 174 VKQRALHVYEEAYRVERFLSVCRSDISEE-QKLQQLGTLMNQ-SHTSLATKYECSHEALDSLVTCFREA---GAYGARLT 248 (315)
Q Consensus 174 l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~-~d~~~LG~LM~~-SH~SLr~lye~S~peLD~Lv~iA~~~---Ga~GaRlT 248 (315)
.|-|..||+. .+|......|+ +.. .+....-.+|.+ -|+..|.-.. |.+..+...+... |.+|.-++
T Consensus 235 ~yp~~d~V~N-lqrlA~LttAl----~~~p~n~~L~y~~m~DkvhqPyRa~LI---PGl~~il~~~~p~t~pGl~GiclS 306 (355)
T KOG1537|consen 235 EYPMVDHVWN-LQRLAALTTAL----LEGPDNVMLGYALMSDKVHQPYRAPLI---PGLEAILKAALPATYPGLFGICLS 306 (355)
T ss_pred cccceeeeec-HHHHHHHHHHH----hcCCCchhhhhhhhhccccCccccccC---ccHHHHHHhhCcccCCceeeEEec
Confidence 4556667775 45554444444 122 233444556665 6899998776 8999999888877 99999999
Q ss_pred CCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCC-CceEE
Q psy7887 249 GAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQ-TGAII 300 (315)
Q Consensus 249 GAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~-~GA~i 300 (315)
||| ..+++|.. ++-+++-++|-+.|.+.... +.+-..+|. +||.+
T Consensus 307 GAG--PT~lAlat-enf~eI~~~mv~~F~K~G~k----cs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 307 GAG--PTALALAT-ENFQEIGEKMVEAFWKVGHK----CSVASLKPALDGAGV 352 (355)
T ss_pred CCC--CeeEEEec-CcHHHHHHHHHHHHHhhCce----eeeEeeccccCCcce
Confidence 998 99999886 78899999999999887543 456666655 56543
No 44
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=85.42 E-value=2.6 Score=39.81 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=39.9
Q ss_pred hhhhHHHHHHH-HHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEecc
Q psy7887 201 EEQKLQQLGTL-MNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSD 261 (315)
Q Consensus 201 ~~~d~~~LG~L-M~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~ 261 (315)
..+|+..++.. .|.-|+....+ .|++..+.+.....| +|+.|+|+| .+++++++
T Consensus 199 ~~~~~~~~~~~~~n~l~~~~~~~----~P~l~~~~~~l~~~~-~~~~~SGSG--~tvf~l~~ 253 (275)
T PRK14611 199 REGEEKKIEEVIENTLGEIALEL----YPEIKEVYRFLEYLG-YKPFVSGSG--SSVYVFGK 253 (275)
T ss_pred HcCCHHHHHHhcCCcccHHHHHH----CHHHHHHHHHHHhCC-CCEEEeCcc--ccceeEeC
Confidence 56778777665 34456666533 489999888766556 599999998 89999984
No 45
>KOG4644|consensus
Probab=84.72 E-value=5.9 Score=41.76 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcC-CCCChHHHHHHHHHHHc--CCceEEEeCC
Q psy7887 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-ECSHEALDSLVTCFREA--GAYGARLTGA 250 (315)
Q Consensus 174 l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~ly-e~S~peLD~Lv~iA~~~--Ga~GaRlTGA 250 (315)
.+.|+.-+...+..+.++.+-|. ...+++.++.+|+++..-++...-.- .|-.+..-++.+..... |- ..-..||
T Consensus 819 ~far~~a~~Q~ah~l~~~tdecA-egf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hge-sgw~AGA 896 (948)
T KOG4644|consen 819 FFARCKATKQKAHKLAEATDECA-EGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHGE-SGWAAGA 896 (948)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhccccccc-cchhccC
Confidence 35566666666666665555542 23578889999999998776654332 35666777777765433 32 2357899
Q ss_pred CCcceEEEeccCCcHHHHHHHHH
Q psy7887 251 GWGGCVVALSDKSSCEALVTQVQ 273 (315)
Q Consensus 251 GfGGcvvaLv~~~~~~~~ie~l~ 273 (315)
|.||.+.-++++...++-++++-
T Consensus 897 GGGGFiYLl~kEpqqkeaiEa~L 919 (948)
T KOG4644|consen 897 GGGGFIYLLIKEPQQKEAIEAFL 919 (948)
T ss_pred CCCcEEEEEecCCCCHHHHHHhh
Confidence 99999999998877666555543
No 46
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=84.58 E-value=1.6 Score=41.42 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC-cHHHHHHHHHHHh
Q psy7887 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQAKF 276 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~~~Y 276 (315)
-.|+++++.+.+.+.|+ +.|||+| .++++|++.. .++.+.+.+++.|
T Consensus 216 ~~P~~~~~~~~l~~~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~~ 263 (271)
T PRK00343 216 RYPEVAQALSWLLEYAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEWL 263 (271)
T ss_pred hChHHHHHHHHHHhCCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhhc
Confidence 45899999999988898 8999998 9999999753 4456666666543
No 47
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=81.90 E-value=2.7 Score=40.64 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHcCC-ce--EEEeCCCCcceEEEeccC-CcHHHHH-HHHHHHhh
Q psy7887 227 HEALDSLVTCFREAGA-YG--ARLTGAGWGGCVVALSDK-SSCEALV-TQVQAKFY 277 (315)
Q Consensus 227 ~peLD~Lv~iA~~~Ga-~G--aRlTGAGfGGcvvaLv~~-~~~~~~i-e~l~~~Y~ 277 (315)
+|++.++.+...+.|+ +| ++|||.| -|++++++. +..++.. +.+++.|.
T Consensus 206 ~p~i~~~~~~l~~~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 206 RLDLKEKKHWLESLWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred ChHHHHHHHHHHhccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 5899999998888654 24 8999998 999999976 3455555 67766644
No 48
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=80.47 E-value=3.7 Score=30.37 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHH
Q psy7887 223 YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 223 ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~ 274 (315)
+.++...+..|.++|++.|..-.|+|+.. +..+.-++.+.++++.+.|.+
T Consensus 19 G~i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 19 GRISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp GEEEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 34566788999999999997778999866 788888999999999988875
No 49
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=80.22 E-value=3.1 Score=40.40 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCc-HHHHHHHHHH
Q psy7887 227 HEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSS-CEALVTQVQA 274 (315)
Q Consensus 227 ~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~-~~~~ie~l~~ 274 (315)
.|++........+.|+.++||||.| .|++++++..+ ++.+.+.+.+
T Consensus 225 ~p~v~~~~~~l~~~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 225 YPEVKEALSELLEYGALPARMSGSG--STVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred ChHHHHHHHHHhhcccccceEecCC--CcEEEEeCChHHHHHHHHHhhc
Confidence 3788886666666788999999998 99999998764 4555555554
No 50
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=69.18 E-value=2.1 Score=20.12 Aligned_cols=6 Identities=67% Similarity=1.896 Sum_probs=4.9
Q ss_pred eCCCCc
Q psy7887 248 TGAGWG 253 (315)
Q Consensus 248 TGAGfG 253 (315)
+|||||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 588998
No 51
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=67.79 E-value=68 Score=31.16 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh----HHHHhhcCC---CCChHHHH---HHHHHHHcCCc
Q psy7887 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQS----HTSLATKYE---CSHEALDS---LVTCFREAGAY 243 (315)
Q Consensus 174 l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~S----H~SLr~lye---~S~peLD~---Lv~iA~~~Ga~ 243 (315)
+..|+.|+- .++.++..++ .++|++.||++...+ |.-|.+-+- -=.|+.-. +|...++.|.-
T Consensus 202 ~~~~v~~~~---~~l~~~~~ai-----~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~ 273 (305)
T TIGR01240 202 FKEWIEHVV---PDFEVXRKAI-----KTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTI 273 (305)
T ss_pred HHHHHHHHH---HHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCc
Confidence 456666632 1366677776 789999999998765 444443210 01233333 34444545644
Q ss_pred eEEEeCCCCcceEEEeccCCcHHHHHHHHHHHh
Q psy7887 244 GARLTGAGWGGCVVALSDKSSCEALVTQVQAKF 276 (315)
Q Consensus 244 GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y 276 (315)
..=..-|| ..+..|++++..+++.+.+.+.|
T Consensus 274 ~~~T~DAG--pNv~vl~~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 274 CYFTMDAG--PNVKVLYLAENLSKLFEFIYKLF 304 (305)
T ss_pred EEEEEcCC--CCEEEEEccccHHHHHHHHHHhc
Confidence 45555666 88999999999999998887754
No 52
>PRK05905 hypothetical protein; Provisional
Probab=58.90 E-value=10 Score=36.14 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEec
Q psy7887 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALS 260 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv 260 (315)
-+|++.++.+...+.|+ +++|||.| .|++++-
T Consensus 222 ~~P~i~~~~~~l~~~g~-~a~MSGSG--stvF~l~ 253 (258)
T PRK05905 222 LYPNLLYKYNELLNDGF-YTILSGAG--SSFIVIK 253 (258)
T ss_pred hChHHHHHHHHHHhCCC-CEEEeCcc--hhheEEe
Confidence 36899999888888886 89999998 6666653
No 53
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=52.16 E-value=39 Score=31.82 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=17.3
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHH
Q psy7887 188 VERFLSVCRSDISEEQKLQQLGTLMNQ 214 (315)
Q Consensus 188 V~~~~~al~~~~l~~~d~~~LG~LM~~ 214 (315)
|..|++++ ..+|++.|..|+.+
T Consensus 170 ~~~f~~a~-----~~gD~~~l~~lL~~ 191 (281)
T TIGR02957 170 LERFVEAA-----QTGDLDGLLELLAE 191 (281)
T ss_pred HHHHHHHH-----HhCCHHHHHHHHhh
Confidence 45577777 78999999998875
No 54
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=48.57 E-value=46 Score=31.44 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHhcCChhhhhc
Q psy7887 77 EAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 77 ~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+.++-+||++++|+++....+
T Consensus 130 ~g~s~~EIA~~lg~s~~tVk~ 150 (293)
T PRK09636 130 FGVPFDEIASTLGRSPAACRQ 150 (293)
T ss_pred hCCCHHHHHHHHCCCHHHHHH
Confidence 457778888888888776664
No 55
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=46.56 E-value=45 Score=31.93 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHH
Q psy7887 186 YRVERFLSVCRSDISEEQKLQQLGTLMNQ 214 (315)
Q Consensus 186 ~RV~~~~~al~~~~l~~~d~~~LG~LM~~ 214 (315)
.-|..|+.++ ..+|++.|-.|+.+
T Consensus 178 ~~~~~f~~a~-----~~gd~~~l~~ll~~ 201 (290)
T PRK09635 178 VVTRAFIEAC-----SNGDLDTLLEVLDP 201 (290)
T ss_pred HHHHHHHHHH-----HhCCHHHHHHHhhh
Confidence 3455688887 78999999999864
No 56
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=46.33 E-value=51 Score=32.00 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEee-CCCceEEE
Q psy7887 232 SLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTK-PQTGAIIF 301 (315)
Q Consensus 232 ~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~-p~~GA~i~ 301 (315)
+++..+.++|+.++-++|-| ...++|+..+ .++++++.+. + .++.+. .+.+++.+
T Consensus 221 e~~~~ale~GA~~aglSGtG--Pa~~Al~~~~--~~v~ea~~~~-----G------~V~~t~~~~~~~~~~ 276 (278)
T COG1685 221 EPALKALEAGAAAAGLSGTG--PAYFALTEDP--EEVAEAWSKI-----G------DVIETRNVGERARDY 276 (278)
T ss_pred HHHHHHHhcccceeccCCCC--CceEEEecCc--HHHHHHHHhC-----C------eEEEEecCCCCceec
Confidence 35667888999999999887 9999999777 7777777663 1 466665 44566654
No 57
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=41.38 E-value=45 Score=33.00 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHH
Q psy7887 223 YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 223 ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~ 274 (315)
+-.|.+.|-.++++|.+.|....++|+-+ |..|..+++++++++.+.|++
T Consensus 40 g~l~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~~ 89 (317)
T COG2221 40 GFLSAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELRE 89 (317)
T ss_pred CccCHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHHH
Confidence 34577788899999999987788999877 888888888999999988884
No 58
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=39.12 E-value=1.5e+02 Score=22.78 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=31.5
Q ss_pred chhhhHHhhhcCHHHHHHHHHHhcCCCCCCHHHHHHHhc
Q psy7887 51 YLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILE 89 (315)
Q Consensus 51 ~L~~~q~~~~~~l~~~~~~~~~~l~~~~yt~~ei~~~l~ 89 (315)
++++.....|+|..+|+....++==+-.|+.+|+.+.+.
T Consensus 36 S~gkAAelag~s~~eF~~~L~~~gI~~~~~~eel~~dle 74 (76)
T PF03683_consen 36 SLGKAAELAGMSRWEFLELLKERGIPINYDEEELEEDLE 74 (76)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 578888889999999999888875446799998886653
No 59
>KOG0484|consensus
Probab=32.08 E-value=53 Score=27.80 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 61 VSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 61 ~~l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
..|.++..+..+..-++-||+|||+-.|++++..+..
T Consensus 27 ~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQV 63 (125)
T KOG0484|consen 27 AQLKELERVFAETHYPDIYTREEIALKIDLTEARVQV 63 (125)
T ss_pred HHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHH
Confidence 3677777776666667889999999999998887764
No 60
>KOG2833|consensus
Probab=29.29 E-value=6.1e+02 Score=25.65 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHH-H---HhHHHHhhcC-------CCCChHHHHHHHHHHH---
Q psy7887 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLM-N---QSHTSLATKY-------ECSHEALDSLVTCFRE--- 239 (315)
Q Consensus 174 l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM-~---~SH~SLr~ly-------e~S~peLD~Lv~iA~~--- 239 (315)
++.|+.+|+- +|+.++.+++ .+.||+.|.+|- . +-|.-|-+-| +.|. ++++.+.+
T Consensus 224 ~qhRi~~vVP--~Ri~~m~eaI-----~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~----~iI~~vh~~N~ 292 (395)
T KOG2833|consen 224 LQHRIESVVP--QRIQQMREAI-----RERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSW----RIISLVHEFNA 292 (395)
T ss_pred HHHHHHhhhH--HHHHHHHHHH-----HhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchH----HHHHHHHHHHh
Confidence 6779999885 7889998987 889999999985 3 3466555532 2232 34444443
Q ss_pred -cCCc-eEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhh
Q psy7887 240 -AGAY-GARLTGAGWGGCVVALSDKSSCEALVTQVQAKFY 277 (315)
Q Consensus 240 -~Ga~-GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~ 277 (315)
.|.. .|-.--||=--|++. -.+++..+.+.+-+.|.
T Consensus 293 ~~G~t~vAYTFDAGPNAvl~~--l~e~~~~~l~~~~~~f~ 330 (395)
T KOG2833|consen 293 SAGGTRVAYTFDAGPNAVLIV--LEENVSQLLAAVLKVFP 330 (395)
T ss_pred ccCCeeEEEEecCCCceEEEE--hhhhHHHHHHHHHHhcC
Confidence 3433 344557775555555 45777788877776543
No 61
>PLN02407 diphosphomevalonate decarboxylase
Probab=28.00 E-value=4.5e+02 Score=26.38 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh----HHHHhhcC-CC--CChHH---HHHHHHHHHc-CC
Q psy7887 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQS----HTSLATKY-EC--SHEAL---DSLVTCFREA-GA 242 (315)
Q Consensus 174 l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~S----H~SLr~ly-e~--S~peL---D~Lv~iA~~~-Ga 242 (315)
...|+.+++. .|+.+..+++ .++||+.||++...+ |.-|-+-+ -+ -.|+- =.+|+..++. |.
T Consensus 225 ~~~w~~~~~~--~~~~~~~~Ai-----~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~ 297 (343)
T PLN02407 225 LQHRAKEVVP--KRILQMEEAI-----KNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGT 297 (343)
T ss_pred HHHHHHhhhH--HHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCC
Confidence 4467776443 3444555565 789999999998865 54444432 00 02332 2344444443 54
Q ss_pred c-eEEEeCCCCcceEEEeccCCcHHH-HHHHHHHHh
Q psy7887 243 Y-GARLTGAGWGGCVVALSDKSSCEA-LVTQVQAKF 276 (315)
Q Consensus 243 ~-GaRlTGAGfGGcvvaLv~~~~~~~-~ie~l~~~Y 276 (315)
. .+=-.-|| ..+..|++++..++ +++++.+.|
T Consensus 298 ~~v~yT~DAG--PNv~vl~~~~~~~~~v~~~~~~~~ 331 (343)
T PLN02407 298 PQVAYTFDAG--PNAVLIALNRKVAAQLLQRLLYYF 331 (343)
T ss_pred ccEEEEecCC--CCEEEEEChhhhHHHHHHHHHHhc
Confidence 2 34555666 88888898888886 888887765
No 62
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=26.54 E-value=1.4e+02 Score=21.27 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCccccccchhhhHHhhhcCHHHHH-----HHHHHhcCCCCCCHHHHHHHhcC-Chhhhhc
Q psy7887 34 LDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMI-----DIADAILHPEAYTKEEVQEILEV-SEEELDS 97 (315)
Q Consensus 34 a~~La~~~gl~~~~~~~~L~~~q~~~~~~l~~~~-----~~~~~~l~~~~yt~~ei~~~l~~-~~~~l~~ 97 (315)
..-||..+|+ ....+.++ +....|.+..+.+ ..+.+.+...+.+.+||+..+|. +...|..
T Consensus 4 ~~~la~~~~~-s~~~l~~~--f~~~~~~s~~~~~~~~r~~~a~~~l~~~~~~~~~ia~~~g~~s~~~f~r 70 (84)
T smart00342 4 LEDLAEALGM-SPRHLQRL--FKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSR 70 (84)
T ss_pred HHHHHHHhCC-CHHHHHHH--HHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCChHHHHH
Confidence 4567888888 33333221 2223344444432 34445555557899999999999 7777763
No 63
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=26.36 E-value=6.6e+02 Score=25.08 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCC-------ChHHHHHHHHHHHc---CCc
Q psy7887 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECS-------HEALDSLVTCFREA---GAY 243 (315)
Q Consensus 174 l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S-------~peLD~Lv~iA~~~---Ga~ 243 (315)
-.+|+.|...-. .++..+. .++|++.||++...+-.++-...--| .|+.-.+++.+++. |-.
T Consensus 206 y~~w~~~~~~~~---~~m~~~~-----~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~ 277 (329)
T COG3407 206 YDAWLEHSEEDL---EEMKEAI-----REKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNA 277 (329)
T ss_pred HHHHHHHHHHhH---HHHHHHH-----hccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCc
Confidence 345777766543 2233333 77899999999887655543322112 23333444444443 432
Q ss_pred eEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 244 GARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 244 GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
-+=..-|| ..+..++..+....+.+.+.+.++.
T Consensus 278 ~~fT~DaG--PnV~v~~~~~~l~~~~~~~~~~~~~ 310 (329)
T COG3407 278 VYFTMDAG--PNVKVITLEENLIDLLEILKTLECI 310 (329)
T ss_pred eEEEEcCC--CceEEEEecccHHHHHHHHhhcccc
Confidence 23334444 8999999999999988888876554
No 64
>KOG2304|consensus
Probab=25.56 E-value=3.2e+02 Score=26.51 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=48.5
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhhc--------------cchhhhh---HHHHHHHHHHhHHHHh--hcCCCCCh
Q psy7887 168 SVASFKVKQRALHVYEEAYRVERFLSVCRS--------------DISEEQK---LQQLGTLMNQSHTSLA--TKYECSHE 228 (315)
Q Consensus 168 ~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~--------------~~l~~~d---~~~LG~LM~~SH~SLr--~lye~S~p 228 (315)
+-..|-+-+-..-++.|+.|+++-=+|-.. .+++--| ++..-..|.--|+.+- .+|. -||
T Consensus 197 DtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~-psP 275 (298)
T KOG2304|consen 197 DTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADYVGLDTCKFVMDGWHEGYPEDSLFA-PSP 275 (298)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHHhhHHHHHHHHHHHHhcCCcccccC-CCh
Confidence 334564445555788999999985444211 0111223 3445566777777762 2465 789
Q ss_pred HHHHHHHHHHHcCCceEEEeCCCC
Q psy7887 229 ALDSLVTCFREAGAYGARLTGAGW 252 (315)
Q Consensus 229 eLD~Lv~iA~~~Ga~GaRlTGAGf 252 (315)
-+|.+|+ .|.+| |=||-||
T Consensus 276 ll~klVa----egklG-rKtg~Gf 294 (298)
T KOG2304|consen 276 LLDKLVA----EGKLG-RKTGEGF 294 (298)
T ss_pred HHHHHHh----ccccc-cccCccc
Confidence 9999997 44455 7788886
No 65
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=25.45 E-value=1e+02 Score=22.95 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCHHHHHHHhcCChhhhhc
Q psy7887 79 YTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 79 yt~~ei~~~l~~~~~~l~~ 97 (315)
-|.+||++.+|++.+++..
T Consensus 21 Pt~eEiA~~lgis~~~v~~ 39 (78)
T PF04539_consen 21 PTDEEIAEELGISVEEVRE 39 (78)
T ss_dssp -BHHHHHHHHTS-HHHHHH
T ss_pred CCHHHHHHHHcccHHHHHH
Confidence 4789999999999998874
No 66
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=24.86 E-value=1.5e+02 Score=28.07 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHhcCChhhhhc
Q psy7887 77 EAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 77 ~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+.++-+||++.||++...+.+
T Consensus 157 ~g~s~~EIA~~lgis~~tV~~ 177 (324)
T TIGR02960 157 LGWRAAETAELLGTSTASVNS 177 (324)
T ss_pred hCCCHHHHHHHHCCCHHHHHH
Confidence 567889999999999987775
No 67
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=24.30 E-value=31 Score=35.03 Aligned_cols=19 Identities=0% Similarity=0.046 Sum_probs=17.7
Q ss_pred eeecCCchHHHHHHHHHHh
Q psy7887 21 LVTTDSIPTAKKTLDIIAK 39 (315)
Q Consensus 21 ~~~~~rVvEcrlAa~~La~ 39 (315)
-.||+|..||.-|++.|++
T Consensus 225 seYn~Rr~ece~A~~~l~~ 243 (390)
T COG0153 225 SEYNERRAECEEAAEFLGV 243 (390)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999
No 68
>PF12962 DUF3851: Protein of unknown function (DUF3851); InterPro: IPR024216 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=23.75 E-value=48 Score=28.17 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=12.9
Q ss_pred cCCchHHHHHHHHHHh
Q psy7887 24 TDSIPTAKKTLDIIAK 39 (315)
Q Consensus 24 ~~rVvEcrlAa~~La~ 39 (315)
-+-|+|||-||+-++.
T Consensus 30 AdAVsECRtAadqa~e 45 (124)
T PF12962_consen 30 ADAVSECRTAADQAAE 45 (124)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4569999999997664
No 69
>PHA02591 hypothetical protein; Provisional
Probab=23.54 E-value=72 Score=25.60 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhh
Q psy7887 62 SLKEMIDIADAILHPEAYTKEEVQEILEVSEEELD 96 (315)
Q Consensus 62 ~l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~ 96 (315)
|=+|...++.+ |...+||.++|++.||++.+...
T Consensus 44 ~~dd~~~vA~e-L~eqGlSqeqIA~~LGVsqetVr 77 (83)
T PHA02591 44 SEDDLISVTHE-LARKGFTVEKIASLLGVSVRKVR 77 (83)
T ss_pred ccchHHHHHHH-HHHcCCCHHHHHHHhCCCHHHHH
Confidence 55566666666 44667999999999999998776
No 70
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=23.38 E-value=3.5e+02 Score=21.45 Aligned_cols=51 Identities=25% Similarity=0.429 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCCceE---EEeCCCCc--------ce-----------EEEeccCCcHHHHHHHHHHHhhh
Q psy7887 228 EALDSLVTCFREAGAYGA---RLTGAGWG--------GC-----------VVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga---RlTGAGfG--------Gc-----------vvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..++.+.+..++.|+.|. ...|-|-. |. +..+|+.+.++++++++.+.-+.
T Consensus 8 ~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~i~ivv~d~~v~~iv~~I~~~~~t 80 (102)
T PF00543_consen 8 EKLEEVIEALREAGVPGMTVSEVRGRGRQKGQAEIYRGDEYFVEFSPKVKIEIVVPDEDVEEIVEAISEAART 80 (102)
T ss_dssp GGHHHHHHHHHHTTGSCEEEEEEEEESSTTTEEEEETTEEECCCEEEEEEEEEEEEGGGHHHHHHHHHHHH-S
T ss_pred hHHHHHHHHHHHCCCCeEEEEEeEEecccccccceeeeeeeeecccccEEEEEEECHHhHHHHHHHHHHhccC
Confidence 468899999999987763 34443422 22 45667888999999999986543
No 71
>KOG3828|consensus
Probab=23.35 E-value=31 Score=35.01 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=27.0
Q ss_pred cccCcccccCCccee---------eecCCchHHHHHHHHHHh
Q psy7887 7 ISSPFHSCSGSASLL---------VTTDSIPTAKKTLDIIAK 39 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~---------~~~~rVvEcrlAa~~La~ 39 (315)
..+|-|||+-|.++. |+|.||-|.=.|...=|-
T Consensus 218 ~~~p~HsC~~sP~~IR~EVe~Lk~Dfn~R~Kevif~smlsAy 259 (457)
T KOG3828|consen 218 LESPTHSCSLSPALIREEVEVLKDDFNLRVKEVIFASMLSAY 259 (457)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999998874 899999999887765553
No 72
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=21.38 E-value=1.8e+02 Score=27.87 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHhcCChhhhhc
Q psy7887 77 EAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 77 ~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+.++.+||++.||++...+.+
T Consensus 168 ~g~s~~EIA~~lgis~~tVk~ 188 (339)
T PRK08241 168 LGWSAAEVAELLDTSVAAVNS 188 (339)
T ss_pred hCCCHHHHHHHhCCCHHHHHH
Confidence 568889999999999887764
No 73
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.37 E-value=71 Score=25.96 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 71 DAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 71 ~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
.+.++..++|.++|+..|++|.++|+.
T Consensus 16 q~nf~~~~ls~~~ia~dL~~s~~~le~ 42 (89)
T PF10078_consen 16 QANFELSGLSLEQIAADLGTSPEHLEQ 42 (89)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHH
Confidence 344556789999999999999999874
No 74
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.01 E-value=80 Score=21.67 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.6
Q ss_pred CCHHHHHHHhcCChhhhhc
Q psy7887 79 YTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 79 yt~~ei~~~l~~~~~~l~~ 97 (315)
||.+|+++.||++...+..
T Consensus 2 lt~~e~a~~l~is~~tv~~ 20 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVYR 20 (51)
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999988763
No 75
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=20.57 E-value=1.8e+02 Score=28.87 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHH
Q psy7887 225 CSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 225 ~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~ 274 (315)
+|...|..|.++|.+.|....|+|-- .+..+..++.++++++.+.|.+
T Consensus 41 lt~eqLr~LAdiaekyg~g~i~lTtr--QnI~l~~I~~edl~~i~~~L~~ 88 (341)
T TIGR02066 41 LSVDTLRKLCDIADKYSDGYLRWTIR--NNVEFLVSDESKIQPLIDELEE 88 (341)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEecc--CCEEEecCCHHHHHHHHHHHHh
Confidence 35556677777777776555677733 3666777777777777766654
No 76
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=20.26 E-value=65 Score=21.30 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=14.0
Q ss_pred CCCHHHHHHHhcCChhhhh
Q psy7887 78 AYTKEEVQEILEVSEEELD 96 (315)
Q Consensus 78 ~yt~~ei~~~l~~~~~~l~ 96 (315)
+.|++||+..+|.+.|-+.
T Consensus 2 ~mtr~diA~~lG~t~ETVS 20 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVS 20 (32)
T ss_dssp E--HHHHHHHHTS-HHHHH
T ss_pred CcCHHHHHHHhCCcHHHHH
Confidence 4689999999999999765
Done!