Query psy7887
Match_columns 315
No_of_seqs 262 out of 1448
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:19:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 2.8E-45 9.4E-50 370.5 18.6 219 21-302 264-519 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 1.6E-39 5.4E-44 323.6 23.2 214 21-302 258-476 (478)
3 1pie_A Galactokinase; galactos 99.9 9.6E-24 3.3E-28 205.6 16.9 145 146-303 273-418 (419)
4 1wuu_A Galactokinase; galactos 99.9 2.7E-22 9.3E-27 194.0 16.8 145 139-301 252-397 (399)
5 2cz9_A Probable galactokinase; 99.9 4.1E-22 1.4E-26 187.5 16.8 143 140-300 208-350 (350)
6 1kvk_A MK, mevalonate kinase; 99.8 1.4E-18 4.9E-23 167.5 14.8 117 173-302 263-381 (395)
7 3k85_A D-glycero-D-manno-hepto 99.7 6.4E-19 2.2E-23 169.2 4.5 112 175-303 228-341 (357)
8 3gon_A Phosphomevalonate kinas 99.7 5.5E-18 1.9E-22 157.2 8.8 89 180-274 228-318 (335)
9 3k17_A LIN0012 protein; protei 99.5 1.6E-14 5.4E-19 139.3 10.5 91 177-274 243-341 (365)
10 2x7i_A Mevalonate kinase; tran 99.5 4.2E-14 1.4E-18 131.0 11.3 85 186-276 212-297 (308)
11 2hfs_A Mevalonate kinase, puta 99.5 7.9E-14 2.7E-18 130.4 12.8 102 188-300 230-332 (332)
12 4hac_A Mevalonate kinase; GHMP 99.5 2E-13 6.9E-18 128.9 12.8 96 189-300 224-320 (321)
13 2oi2_A Mevalonate kinase; enzy 99.5 2.3E-13 7.8E-18 124.5 12.3 84 188-277 200-284 (292)
14 2pg9_A Phosphomevalonate kinas 99.4 5.3E-13 1.8E-17 126.9 11.3 84 185-274 235-320 (337)
15 1kkh_A Mevalonate kinase; mixe 99.4 4.4E-12 1.5E-16 117.8 12.2 72 201-274 234-305 (317)
16 1h72_C HK, homoserine kinase; 99.2 1.6E-11 5.4E-16 112.8 8.5 102 178-300 192-295 (296)
17 2gs8_A Mevalonate pyrophosphat 98.9 8.2E-09 2.8E-13 96.3 12.1 104 176-300 204-317 (317)
18 3hul_A HSK, HK, homoserine kin 98.7 5.4E-08 1.8E-12 91.1 10.2 101 183-301 186-289 (298)
19 3qt5_A Mevalonate diphosphate 98.7 7E-08 2.4E-12 91.8 10.4 100 187-301 221-331 (332)
20 3pyf_A 4-diphosphocytidyl-2-C- 98.1 6.3E-06 2.2E-10 77.3 8.8 97 188-302 203-301 (306)
21 1fi4_A Mevalonate 5-diphosphat 98.1 2.6E-05 8.9E-10 76.3 13.1 86 185-277 251-348 (416)
22 2hke_A Diphosphomevalonate dec 97.7 0.00043 1.5E-08 66.6 13.7 110 185-301 222-371 (380)
23 1uek_A 4-(cytidine 5'-diphosph 97.7 4.7E-05 1.6E-09 69.4 6.2 59 226-297 209-268 (275)
24 3f0n_A Mevalonate pyrophosphat 97.2 0.0023 7.9E-08 63.1 11.9 87 185-278 248-346 (414)
25 3lto_A Mevalonate diphosphate 97.1 0.0022 7.5E-08 61.1 9.7 86 185-277 213-309 (323)
26 2v8p_A 4-diphosphocytidyl-2-C- 96.9 0.0003 1E-08 64.1 2.5 56 201-264 196-253 (271)
27 2ww4_A 4-diphosphocytidyl-2C-m 95.2 0.008 2.8E-07 55.3 2.6 43 226-272 218-261 (283)
28 1vfj_A Nitrogen regulatory pro 61.4 23 0.00079 27.9 6.8 51 228-278 11-83 (116)
29 2eg2_A Nitrogen regulatory pro 60.9 26 0.00089 27.4 7.0 52 227-278 10-83 (112)
30 2cz4_A Hypothetical protein TT 57.0 34 0.0012 27.6 7.1 53 226-278 33-99 (119)
31 2j9c_A GLNK1, hypothetical nit 56.8 29 0.00098 27.6 6.6 52 227-278 12-85 (119)
32 3lsg_A Two-component response 54.4 23 0.00077 26.6 5.4 34 64-97 5-38 (103)
33 3bzq_A Nitrogen regulatory pro 52.8 39 0.0013 26.4 6.8 51 228-278 13-85 (114)
34 2o66_A PII protein; regulation 49.6 53 0.0018 27.0 7.3 63 228-293 23-108 (135)
35 2ns1_B Nitrogen regulatory pro 49.3 67 0.0023 25.2 7.7 52 227-278 14-87 (116)
36 2gw8_A PII signal transduction 48.6 46 0.0016 26.1 6.6 51 228-278 13-85 (114)
37 3ncq_A Nitrogen regulatory pro 47.5 68 0.0023 25.7 7.5 63 228-293 11-95 (119)
38 1hwu_A PII protein; herbaspiri 46.5 68 0.0023 24.9 7.2 51 228-278 11-83 (112)
39 3dfe_A Putative PII-like signa 43.6 49 0.0017 26.3 6.0 62 228-294 16-97 (111)
40 3mkl_A HTH-type transcriptiona 36.5 1E+02 0.0036 23.5 6.8 34 63-97 9-42 (120)
41 2kz2_A Calmodulin, CAM; TR2C, 36.4 27 0.00093 25.6 3.2 14 8-21 2-15 (94)
42 2k9s_A Arabinose operon regula 34.3 48 0.0016 24.9 4.4 35 63-97 5-39 (107)
43 3t9z_A GLNK3, nitrogen regulat 34.0 1.3E+02 0.0044 24.0 7.1 50 228-277 11-82 (118)
44 3oio_A Transcriptional regulat 33.4 58 0.002 24.7 4.8 34 63-97 9-42 (113)
45 1bl0_A Protein (multiple antib 30.9 76 0.0026 24.7 5.2 76 37-115 33-129 (129)
46 3m05_A Uncharacterized protein 29.7 1E+02 0.0035 24.8 5.8 53 228-280 16-73 (114)
47 4aff_A Nitrogen regulatory pro 28.6 2.2E+02 0.0074 22.5 7.6 50 228-277 11-82 (116)
48 3oou_A LIN2118 protein; protei 26.1 86 0.0029 23.5 4.6 34 63-97 7-40 (108)
49 1kvd_A SMK toxin; halotolerant 24.5 14 0.00046 26.3 -0.4 33 10-43 15-47 (63)
50 1o51_A Hypothetical protein TM 24.0 84 0.0029 25.1 4.3 48 228-275 30-97 (114)
51 2jyp_A Aragonite protein AP7; 23.7 30 0.001 22.1 1.2 21 6-26 4-24 (36)
52 3mn2_A Probable ARAC family tr 23.7 1E+02 0.0034 23.0 4.5 34 63-97 4-37 (108)
53 3mm5_B Sulfite reductase, diss 22.6 1E+02 0.0036 29.0 5.3 50 224-275 61-110 (366)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=2.8e-45 Score=370.48 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=184.9
Q ss_pred eeecCCchHHHHHHHHHHhhcCCCccccc--------cchhhhHHhh------------------hcCHHHHHHHHHHhc
Q psy7887 21 LVTTDSIPTAKKTLDIIAKKKDVDNWKDI--------LYLGELQTKL------------------AVSLKEMIDIADAIL 74 (315)
Q Consensus 21 ~~~~~rVvEcrlAa~~La~~~gl~~~~~~--------~~L~~~q~~~------------------~~~l~~~~~~~~~~l 74 (315)
-.||+||+||+.||++|++++|+ .|... .+|++++..+ ..+|++|++++.+.|
T Consensus 264 s~YN~Rr~eCe~Aa~~L~~~~g~-~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l 342 (520)
T 3v2u_C 264 TNYNLRVIEVTVAANALATRYSV-ALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESF 342 (520)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTB-CCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhhCC-cccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHh
Confidence 36999999999999999999998 55321 2577765431 246888999999999
Q ss_pred CCC--CCCHHHHHHHhcCChhhhhcccCCCCcccccccccccchhHHHHhhhhhhhhccccCCchhhhhhhcchhhhhcC
Q psy7887 75 HPE--AYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEV 152 (315)
Q Consensus 75 ~~~--~yt~~ei~~~l~~~~~~l~~~i~~~nt~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~~Lrdv 152 (315)
++. +||++||++.||++.++|.+
T Consensus 343 ~~~~~~yt~~e~~~~l~~~~~~l~~------------------------------------------------------- 367 (520)
T 3v2u_C 343 SRKKSGFTVHEASTALNCSREEFTR------------------------------------------------------- 367 (520)
T ss_dssp TTCTTCBCHHHHHHHTTSCHHHHHH-------------------------------------------------------
T ss_pred hhccccccHHHHHHhhcCChhhhhh-------------------------------------------------------
Confidence 774 89999999999988888875
Q ss_pred CHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhhhHHHHHHHHHHhHHHHhhcCCCCChHH
Q psy7887 153 SEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSD--ISEEQKLQQLGTLMNQSHTSLATKYECSHEAL 230 (315)
Q Consensus 153 s~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~--~l~~~d~~~LG~LM~~SH~SLr~lye~S~peL 230 (315)
.+|+.++.++++|++++||+|||+||.||++++++|++. ....+|++.||+||++||.|||++|+||||+|
T Consensus 368 -------~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~pel 440 (520)
T 3v2u_C 368 -------DYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIET 440 (520)
T ss_dssp -------HHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred -------hhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 334445556677899999999999999999999999421 11124799999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEEeCCCCcceEEEec---cCCcHHHHHHHHHHHhhhccCCC----CCCCeEEEeeCCCceEEEe
Q psy7887 231 DSLVTCFREAGAYGARLTGAGWGGCVVALS---DKSSCEALVTQVQAKFYTDQRTS----SKPDLIFTTKPQTGAIIFQ 302 (315)
Q Consensus 231 D~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv---~~~~~~~~ie~l~~~Y~~~~~~~----~~~~~vf~t~p~~GA~i~~ 302 (315)
|.|+++|++.|++||||||||||||+|+|+ +++.+++++++|.+.|+++.++. ..++.+|+|+|+.||+|+.
T Consensus 441 d~lv~~a~~~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 441 NQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp HHHHHHHHHTTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred HHHHHHHHhCCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEecCCCceEEee
Confidence 999999999999999999999999999999 89999999999999999887642 1246899999999999984
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=1.6e-39 Score=323.63 Aligned_cols=214 Identities=42% Similarity=0.691 Sum_probs=190.1
Q ss_pred eeecCCchHHHHHHHHHHhhcCCCccccccchhhhHHhhhcCHHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhcccC
Q psy7887 21 LVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDIL 100 (315)
Q Consensus 21 ~~~~~rVvEcrlAa~~La~~~gl~~~~~~~~L~~~q~~~~~~l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~~i~ 100 (315)
..||.|++||+.|+++|++++|+ +|.++.+|.++++.++.++++|++.+.+.+++.+|+.+|+.+.||++.+++...++
T Consensus 258 ~~yn~r~~e~~~A~~~L~~~~~~-~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l 336 (478)
T 2a2c_A 258 SHFNIRVMECRLAAKLLAKYKSL-QWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQIL 336 (478)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTC-CTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTS
T ss_pred chhHHHHHHHHHHHHHHHhhhcc-cccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhcc
Confidence 68999999999999999999999 89999999999999999999999999999999999999999999999998876333
Q ss_pred CCCcccccccccccchhHHHHhhhhhhhhccccCCchhhhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHH
Q psy7887 101 TPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALH 180 (315)
Q Consensus 101 ~~nt~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~H 180 (315)
+.++...+.|++++|++|
T Consensus 337 --------------------------------------------------------------~~~~~~~~~~~~~~ra~h 354 (478)
T 2a2c_A 337 --------------------------------------------------------------SPNTQDVLIFKLYQRAKH 354 (478)
T ss_dssp --------------------------------------------------------------CGGGTTCCCBCHHHHHHH
T ss_pred --------------------------------------------------------------ccccccchhHHHHHHHHH
Confidence 222223344689999999
Q ss_pred HHHHHHHHHHHHHHhhccchhh---hhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEE
Q psy7887 181 VYEEAYRVERFLSVCRSDISEE---QKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVV 257 (315)
Q Consensus 181 V~~Ea~RV~~~~~al~~~~l~~---~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvv 257 (315)
+++|+.||.+++++| .. +|++.||++|++||.+||++|+||||++|+|+++|+++|++|+||||||||||++
T Consensus 355 ~~~e~~rv~~~~~aL-----~~~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~vi 429 (478)
T 2a2c_A 355 VYSEAARVLQFKKIC-----EEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 429 (478)
T ss_dssp HHHHHHHHHHHHHHH-----HHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEE
T ss_pred HHHHHHHHHHHHHHH-----HhccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEE
Confidence 999999999999998 55 8999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcHHHHHHHHHHHhhhccCCC--CCCCeEEEeeCCCceEEEe
Q psy7887 258 ALSDKSSCEALVTQVQAKFYTDQRTS--SKPDLIFTTKPQTGAIIFQ 302 (315)
Q Consensus 258 aLv~~~~~~~~ie~l~~~Y~~~~~~~--~~~~~vf~t~p~~GA~i~~ 302 (315)
+|++++.+++++++|++.|+++++.. ...+.+|+++|++||+++.
T Consensus 430 aLv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~p~~Ga~~~~ 476 (478)
T 2a2c_A 430 SMVPADKLPSFLANVHKAYYQRSDGSLAPEKQSLFATKPGGGALVLL 476 (478)
T ss_dssp EEEEGGGHHHHHHHHHHHHHC---------CCSEEEECCBCCCEEEE
T ss_pred EEEcHHHHHHHHHHHHHHHHHhcCccccCCCCcEEEEcCCCCeEeec
Confidence 99999999999999999999886410 1135799999999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.91 E-value=9.6e-24 Score=205.62 Aligned_cols=145 Identities=28% Similarity=0.447 Sum_probs=128.2
Q ss_pred hhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCC
Q psy7887 146 VQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYEC 225 (315)
Q Consensus 146 v~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~ 225 (315)
+..|++++++++.+.. ..+.++..++|+.|++.|+.|+.++++++ ..+|++.||++|+++|.++++.|++
T Consensus 273 v~~l~~~~~~~~~~~~-----~~l~~~~~~~~~~~~v~e~~r~~~~~~al-----~~~d~~~lg~lm~~~~~~l~~~~~~ 342 (419)
T 1pie_A 273 IQSLGELSNEEFDANT-----DLIGDETLIKRARHAVYENNRTKIAQKAF-----VAGNLTKFGELLNASHASLKDDYEV 342 (419)
T ss_dssp CSSGGGCCHHHHHHTG-----GGTCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHTSCC
T ss_pred cCchhhCCHHHHHHHH-----hhcCcHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhhCC
Confidence 7789999988876532 23445578999999999999999999997 7899999999999999999999999
Q ss_pred CChHHHHHHHHHHHc-CCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEEEee
Q psy7887 226 SHEALDSLVTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQC 303 (315)
Q Consensus 226 S~peLD~Lv~iA~~~-Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i~~~ 303 (315)
+||++|.+++.+++. |++|+||||||||||+++|++.+.+++++++|++.|+++++. .+.+|+++|+.||+++.+
T Consensus 343 ~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~~g~---~~~~~~~~~~~Ga~v~~~ 418 (419)
T 1pie_A 343 TGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVGY---PASFYVAQIGSGSTKLDV 418 (419)
T ss_dssp CCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHSS---CCEEEECCBCCCSBCC--
T ss_pred CCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHhcCC---CCeEEEEcCCCCeeeccC
Confidence 999999999999997 999999999999999999999988999999999999887544 358999999999988753
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.88 E-value=2.7e-22 Score=193.98 Aligned_cols=145 Identities=29% Similarity=0.459 Sum_probs=127.6
Q ss_pred hhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHH
Q psy7887 139 RSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTS 218 (315)
Q Consensus 139 ~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~S 218 (315)
++++.|++..+|+++.+++.+.. ..+. ...++|+.|++.|+.|+.++++++ ..+|++.||++|++||.+
T Consensus 252 ~a~~~l~~~~l~~~~~~~~~~~~-----~~l~-~~~~~r~~~~~~e~~r~~~~~~al-----~~~d~~~lg~~m~~~h~~ 320 (399)
T 1wuu_A 252 EVARALGKESLREVQLEELEAAR-----DLVS-KEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRS 320 (399)
T ss_dssp HHHHHTTCSSTTSCCHHHHTTGG-----GGSC-HHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhChhhhhcCCHHHHHHHH-----hhcC-HHHHHHHHHHHhhHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHH
Confidence 45678888889999988876532 2233 357999999999999999999997 789999999999999999
Q ss_pred HhhcCCCCChHHHHHHHHHHH-cCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCc
Q psy7887 219 LATKYECSHEALDSLVTCFRE-AGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTG 297 (315)
Q Consensus 219 Lr~lye~S~peLD~Lv~iA~~-~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~G 297 (315)
+++.+.++||++|.+++.+++ .|++|+||||||||||+++|++.+.+++++++|++.| +. .+.+|+++|++|
T Consensus 321 l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~----~~---~~~~~~~~~~~G 393 (399)
T 1wuu_A 321 LRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY----GG---TATFYLSQAADG 393 (399)
T ss_dssp HHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC----SS---CCEEEEECCCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh----CC---CCcEEEEcCCCC
Confidence 999999999999999999999 7999999999999999999999988999999999988 22 358999999999
Q ss_pred eEEE
Q psy7887 298 AIIF 301 (315)
Q Consensus 298 A~i~ 301 (315)
++++
T Consensus 394 a~~~ 397 (399)
T 1wuu_A 394 AKVL 397 (399)
T ss_dssp SEEC
T ss_pred eeec
Confidence 9875
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.88 E-value=4.1e-22 Score=187.46 Aligned_cols=143 Identities=30% Similarity=0.395 Sum_probs=125.2
Q ss_pred hhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHH
Q psy7887 140 SVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSL 219 (315)
Q Consensus 140 ~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SL 219 (315)
+++.++++.||+++.++| . . + +..+++|..|++.|+.|+.++..++ ..+|++.||++|+++|.++
T Consensus 208 a~~~~~~~~lr~~~~~~~-~-~-------l-~~~~~~~~~~~~~~~~~~~~~~~al-----~~~d~~~lg~~~~~~~~~l 272 (350)
T 2cz9_A 208 SLKILGKGSSKEVREGEL-S-K-------L-PPLHRKFFGYIVRENARVLEVRDAL-----KEGNVEEVGKILTTAHWDL 272 (350)
T ss_dssp HHHHHTCSCGGGCCGGGG-G-G-------S-CHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhhhhCCHHHH-h-h-------C-CHHHHHHHHHHhhHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHH
Confidence 556777888899887776 1 1 1 1246789999999999999999987 7899999999999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceE
Q psy7887 220 ATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAI 299 (315)
Q Consensus 220 r~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~ 299 (315)
++.|.++||++|.+++.+++.|++|+||||||||||+++|++.+.+++++++|++.|++.++. .+.+|+++|++||+
T Consensus 273 ~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~Ga~ 349 (350)
T 2cz9_A 273 AKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPW---KARHFIVEPSDGVG 349 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHCCS---CCEEEEECEECCSB
T ss_pred HHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHhhCC---CCcEEEecCCCCCC
Confidence 998889999999999999999999999999999999999999988999999999999887443 35899999999986
Q ss_pred E
Q psy7887 300 I 300 (315)
Q Consensus 300 i 300 (315)
+
T Consensus 350 ~ 350 (350)
T 2cz9_A 350 I 350 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.78 E-value=1.4e-18 Score=167.49 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCC
Q psy7887 173 KVKQRALHVYEEAYRVERF-LSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 251 (315)
Q Consensus 173 ~l~~Ra~HV~~Ea~RV~~~-~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAG 251 (315)
.+++|+.|++.|+.|++.. +.++ ..+|++.||++|+++|.++++ |.+|||++|.+++.+++.|+ |+||||||
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~al-----~~~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG 335 (395)
T 1kvk_A 263 PLLTSIDAISLECERVLGEMAAAP-----VPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAG 335 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc-----cHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCC
Confidence 3678999999999999876 4555 789999999999999999998 88999999999999999999 99999999
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEee-CCCceEEEe
Q psy7887 252 WGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTK-PQTGAIIFQ 302 (315)
Q Consensus 252 fGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~-p~~GA~i~~ 302 (315)
||||+++|++++..+++++++.+.|.+. +. .+|+++ ++.|+++..
T Consensus 336 ~Gg~v~~l~~~~~~~~~~~~~~~~~~~~-g~-----~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 336 GGGCGITLLKPGLERAKVEAAKQALTGC-GF-----DCWETSIGAPGVSMHS 381 (395)
T ss_dssp SSSEEEEEECTTCCHHHHHHHHHHHHHT-TC-----EEEEEEESCCCSEEEC
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHHHc-CC-----EEEEEecCCCcEEEEe
Confidence 9999999999888889999999988875 22 478777 788998864
No 7
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=6.4e-19 Score=169.18 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhc-CCCCChHHHHHHHHHHHcCCceEEEeCCCCc
Q psy7887 175 KQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATK-YECSHEALDSLVTCFREAGAYGARLTGAGWG 253 (315)
Q Consensus 175 ~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~l-ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfG 253 (315)
++|+.|.+.| |+.+++++| ..+|++.||++|+++|.+++++ |++|||++|.|+++|++.|++|+||||||||
T Consensus 228 ~~~~~~~i~~--~~~~~~~aL-----~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~g 300 (357)
T 3k85_A 228 AIEAMHKIKQ--SAIDTKLAL-----LKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGG 300 (357)
T ss_dssp TTHHHHHHHH--HHHHHHHHH-----TTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC--
T ss_pred HHHHHHHHHH--HHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCC
Confidence 4578999986 888898887 7899999999999999999998 9999999999999999999999999999999
Q ss_pred ceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCC-CceEEEee
Q psy7887 254 GCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQ-TGAIIFQC 303 (315)
Q Consensus 254 GcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~-~GA~i~~~ 303 (315)
||+++|++++.+++++++|++. +. .++.+.+. .|+++..+
T Consensus 301 G~vial~~~~~~~~~~~~l~~~-----g~-----~~~~~~~~~~G~~v~~~ 341 (357)
T 3k85_A 301 GFIMFVVEPTRKEEVVRALNNL-----NG-----FVMPFQFIDDGAHGWKI 341 (357)
T ss_dssp -CEEEECCHHHHHHHHHHHHTS-----SS-----CBCCCCBCCCCCEEEEC
T ss_pred CEEEEEecHHHHHHHHHHHHHC-----CC-----eEEEeEEcCCceEEEEe
Confidence 9999999988888888888753 11 34555544 68888765
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.73 E-value=5.5e-18 Score=157.24 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhc-CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEE
Q psy7887 180 HVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATK-YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVA 258 (315)
Q Consensus 180 HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~l-ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvva 258 (315)
++.....||.++.+++ ..+|++.||+||+++|.+|+++ +++|||++|.|+++|++.|+ |+||||||||||+|+
T Consensus 228 ~~~~~~~~~~~~~~aL-----~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~akltGAG~Ggc~ia 301 (335)
T 3gon_A 228 FLTSSKETVVSLVEAL-----EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIA 301 (335)
T ss_dssp HHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEECTTCSSSEEEE
T ss_pred HHHHHHHHHHHHHHHH-----HhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEccccchheEEE
Confidence 3445567788888887 7899999999999999999995 58999999999999999996 899999999999999
Q ss_pred eccCC-cHHHHHHHHHH
Q psy7887 259 LSDKS-SCEALVTQVQA 274 (315)
Q Consensus 259 Lv~~~-~~~~~ie~l~~ 274 (315)
|++.+ ..+.+.+++++
T Consensus 302 l~~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 302 LSFDAQSTKTLKNRWAD 318 (335)
T ss_dssp EECSHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHH
Confidence 99753 34444444444
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.54 E-value=1.6e-14 Score=139.26 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=77.6
Q ss_pred HHHHHHHHH-HHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCC------CChHHHHHHHHHHHcCCceEEEeC
Q psy7887 177 RALHVYEEA-YRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYEC------SHEALDSLVTCFREAGAYGARLTG 249 (315)
Q Consensus 177 Ra~HV~~Ea-~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~------S~peLD~Lv~iA~~~Ga~GaRlTG 249 (315)
+..|++.|. .++.+++++| ..+|++.||++|+++|.++|+ +.+ |+|++|.|++.|++.|++ +||||
T Consensus 243 ~~~~~~~~~~~~~~~~~~aL-----~~gd~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~~Ga~-ak~sG 315 (365)
T 3k17_A 243 NYQHFLTRNNEIMKQIIQAF-----HTKDEELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAENMGGA-GKSSG 315 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHHTTSE-EEECT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHhcCCE-EEecC
Confidence 367899995 5678888887 789999999999999999998 544 999999999999999998 99999
Q ss_pred CCCcceEEEeccCC-cHHHHHHHHHH
Q psy7887 250 AGWGGCVVALSDKS-SCEALVTQVQA 274 (315)
Q Consensus 250 AGfGGcvvaLv~~~-~~~~~ie~l~~ 274 (315)
||||||+++|++.+ ..+++.+++++
T Consensus 316 AGgGg~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 316 SGGGDCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp TCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 99999999999874 34555555554
No 10
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.52 E-value=4.2e-14 Score=130.98 Aligned_cols=85 Identities=29% Similarity=0.476 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-Cc
Q psy7887 186 YRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SS 264 (315)
Q Consensus 186 ~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~ 264 (315)
.++.++.+++ ..+|++.||++|+++|.++++ +.+++|++|.+++.+++.|++|+||||+|+|||+++|++. +.
T Consensus 212 ~~~~~~~~al-----~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~~~~ 285 (308)
T 2x7i_A 212 KLVLRASDVI-----EHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPT 285 (308)
T ss_dssp HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESSHHH
T ss_pred HHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCChhH
Confidence 4777777777 788999999999999999999 5789999999999999999999999999999999999987 67
Q ss_pred HHHHHHHHHHHh
Q psy7887 265 CEALVTQVQAKF 276 (315)
Q Consensus 265 ~~~~ie~l~~~Y 276 (315)
++++.+++++.|
T Consensus 286 ~~~~~~~l~~~~ 297 (308)
T 2x7i_A 286 AKNIVKAVEKAG 297 (308)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 788888887754
No 11
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.51 E-value=7.9e-14 Score=130.43 Aligned_cols=102 Identities=32% Similarity=0.460 Sum_probs=81.6
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCc-HH
Q psy7887 188 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSS-CE 266 (315)
Q Consensus 188 V~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~-~~ 266 (315)
+.++.+++ ..+|++.||++|+++|..++.. .+++|++|.+++.+++.|++|+||||+|+|||+++|++.+. .+
T Consensus 230 ~~~~~~al-----~~~d~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~ 303 (332)
T 2hfs_A 230 VSQAREAL-----QKGDLQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRD 303 (332)
T ss_dssp HHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHH
T ss_pred HHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHH
Confidence 44455665 7889999999999999999984 68999999999999999999999999999999999998764 68
Q ss_pred HHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEE
Q psy7887 267 ALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAII 300 (315)
Q Consensus 267 ~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i 300 (315)
++.+++.+.|....+ ...+.+.|++||++
T Consensus 304 ~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 304 AIVKGLKAKCPEAKF-----IWRYTVQPSAASNL 332 (332)
T ss_dssp HHHHHHHHHCTTCCE-----EEEEEECCSCC---
T ss_pred HHHHHHHHHHhcCCc-----eEEEEeccCCCCCC
Confidence 899999887764221 12355668888863
No 12
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.48 E-value=2e-13 Score=128.86 Aligned_cols=96 Identities=30% Similarity=0.454 Sum_probs=79.8
Q ss_pred HHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHH
Q psy7887 189 ERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEAL 268 (315)
Q Consensus 189 ~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ 268 (315)
.++..++ ..+|++.||++|+++|..++ .+++|+|++|++++.+++.|++|+||||+|+|||+++|++++.++++
T Consensus 224 ~~~~~al-----~~~d~~~lg~~~~~~~~~~~-~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~ 297 (321)
T 4hac_A 224 RIGEQLV-----LSGDYASIGRLMNVNQGLLD-ALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQV 297 (321)
T ss_dssp HHHHHHH-----HHTCHHHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHH
T ss_pred HHHHHHH-----HhCCHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHH
Confidence 3445555 78999999999999987554 56789999999999999999999999999999999999987888888
Q ss_pred HHHHHHHhhhccCCCCCCCeEEEeeCC-CceEE
Q psy7887 269 VTQVQAKFYTDQRTSSKPDLIFTTKPQ-TGAII 300 (315)
Q Consensus 269 ie~l~~~Y~~~~~~~~~~~~vf~t~p~-~GA~i 300 (315)
.++|++.+ ..+|.+++. .|++|
T Consensus 298 ~~~l~~~g----------~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 298 AEAVAGAG----------GKVTITKPTEQGLKV 320 (321)
T ss_dssp HHHHHHTT----------CEEEEECBCSCSSEE
T ss_pred HHHHHhCC----------CeEEEEEECCCceec
Confidence 88887632 257777765 58765
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.48 E-value=2.3e-13 Score=124.47 Aligned_cols=84 Identities=27% Similarity=0.462 Sum_probs=74.1
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcHH
Q psy7887 188 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSCE 266 (315)
Q Consensus 188 V~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~~ 266 (315)
+.++.+++ .++|++.||++|+++|.+++. +.+++|++|++++.+++.|++|+||||+|+|||+++|++. +.++
T Consensus 200 ~~~~~~al-----~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~ 273 (292)
T 2oi2_A 200 TQQAEIAI-----SQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQ 273 (292)
T ss_dssp HHHHHHHH-----HTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHH
T ss_pred HHHHHHHH-----HcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHH
Confidence 44556666 778999999999999999998 5789999999999999999999999999999999999987 6778
Q ss_pred HHHHHHHHHhh
Q psy7887 267 ALVTQVQAKFY 277 (315)
Q Consensus 267 ~~ie~l~~~Y~ 277 (315)
++.+++++.|+
T Consensus 274 ~~~~~l~~~~~ 284 (292)
T 2oi2_A 274 ELAERLEEKGA 284 (292)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhcCc
Confidence 88888887654
No 14
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.42 E-value=5.3e-13 Score=126.92 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcC-CCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC
Q psy7887 185 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-ECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS 263 (315)
Q Consensus 185 a~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~ly-e~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~ 263 (315)
+.++.++++++ ..+|++.||++|+++|.++++++ .+++|++|.+++.+++.|++ +||||||||||+++|++.+
T Consensus 235 ~~~~~~~~~aL-----~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg~vial~~~~ 308 (337)
T 2pg9_A 235 KETVVSLVEAL-----EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGGDCGIALSFDA 308 (337)
T ss_dssp HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSSSEEEEEECSH
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCccEEEEEECCH
Confidence 55677788887 78999999999999999999887 48999999999999999999 9999999999999999764
Q ss_pred -cHHHHHHHHHH
Q psy7887 264 -SCEALVTQVQA 274 (315)
Q Consensus 264 -~~~~~ie~l~~ 274 (315)
..+++.+++++
T Consensus 309 ~~~~~~~~~l~~ 320 (337)
T 2pg9_A 309 QSTKTLKNRWAD 320 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45556655554
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.35 E-value=4.4e-12 Score=117.82 Aligned_cols=72 Identities=32% Similarity=0.569 Sum_probs=65.4
Q ss_pred hhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHH
Q psy7887 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 201 ~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~ 274 (315)
..+|++.||++|+++|..+++ +.+|+|++|++++.+++.| +|+||||+|+|||+++|++.+.++++.+++++
T Consensus 234 ~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~~ 305 (317)
T 1kkh_A 234 KIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNK 305 (317)
T ss_dssp HCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechhhHHHHHHHHHh
Confidence 558999999999999999887 5789999999999999999 99999999999999999998878877777764
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.23 E-value=1.6e-11 Score=112.84 Aligned_cols=102 Identities=9% Similarity=0.150 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHH--HHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcce
Q psy7887 178 ALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLM--NQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGC 255 (315)
Q Consensus 178 a~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM--~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGc 255 (315)
..|.+.+..|+.++..++ ..+|++.||++| |..|++++. +++|++|.+++.+++. ++|+||||+|+ |
T Consensus 192 ~~~~~~~~~~~~~~~~al-----~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG~--~ 260 (296)
T 1h72_C 192 LKDLVNNVGKACGMVYAL-----YNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSGP--S 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTSS--C
T ss_pred HHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCCh--h
Confidence 458888999998888887 789999999999 778888885 6899999999999998 89999999996 9
Q ss_pred EEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEE
Q psy7887 256 VVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAII 300 (315)
Q Consensus 256 vvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i 300 (315)
+++|++++.++++.+++++.|.. .++++|+.|+++
T Consensus 261 v~~l~~~~~~~~~~~~l~~~~~~----------~~~~~~~~Ga~v 295 (296)
T 1h72_C 261 IIAFPKEEFIDEVENILRDYYEN----------TIRTEVGKGVEV 295 (296)
T ss_dssp EEEEECGGGHHHHHHHHHHHCSC----------EEEECBCCCCEE
T ss_pred eEEEecHHHHHHHHHHHHHhccC----------ceeccCCCCeEe
Confidence 99999777888899998876532 226677778775
No 17
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=98.91 E-value=8.2e-09 Score=96.33 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChH-------HHHHHHHH---HHcCCceE
Q psy7887 176 QRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEA-------LDSLVTCF---REAGAYGA 245 (315)
Q Consensus 176 ~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~pe-------LD~Lv~iA---~~~Ga~Ga 245 (315)
+|+.|+ ..|+.+++.++ .++|++.||++|+++|..++..|..++|+ +..+.+.+ +..|++|+
T Consensus 204 ~~~~~~---~~~~~~~~~al-----~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~ 275 (317)
T 2gs8_A 204 QWVEQS---AIDYQHMLTYL-----KTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACY 275 (317)
T ss_dssp HHHHHH---HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHH---HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEE
Confidence 345553 66788888887 78999999999999999999988777665 35665443 44798899
Q ss_pred EEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEE
Q psy7887 246 RLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAII 300 (315)
Q Consensus 246 RlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i 300 (315)
-++|+| +|+++|++.+..+++.+.+++ ...++++++++|+++
T Consensus 276 ~~SGaG--ptv~~l~~~~~~~~v~~~l~~-----------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 276 FTMDAG--PNVKVLCLEKDLAQLAERLGK-----------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp EECCSS--SCEEEEEEGGGHHHHHHHHHT-----------TSEEEEEEBCCCCCC
T ss_pred EEecCC--CeEEEEEcHHHHHHHHHHHhc-----------CCeEEEEecCCCCCC
Confidence 998886 999999998877888877776 137999999999874
No 18
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=98.70 E-value=5.4e-08 Score=91.09 Aligned_cols=101 Identities=19% Similarity=0.312 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHH--hHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEec
Q psy7887 183 EEAYRVERFLSVCRSDISEEQKLQQLGTLMNQ--SHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALS 260 (315)
Q Consensus 183 ~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~--SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv 260 (315)
.+..|+..+..++ ..+|++.||++|+. .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|+
T Consensus 186 ~~~~~~~~~~~al-----~~~d~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~ 255 (298)
T 3hul_A 186 QASSIANVMIAAI-----LRNDMTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG--PTVLVFA 255 (298)
T ss_dssp HHHHHHHHHHHHH-----TTTCHHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--SCEEEEE
T ss_pred HHHHHHHHHHHHH-----HcCCHHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--hheEEEE
Confidence 3455676677776 78999999999973 47877754 46999999999999999999999998 7999999
Q ss_pred cCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCC-CceEEE
Q psy7887 261 DKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQ-TGAIIF 301 (315)
Q Consensus 261 ~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~-~GA~i~ 301 (315)
+++.++++.+++++. . . ...++++++. .|++|.
T Consensus 256 ~~~~a~~v~~~l~~~----~-~---~~~~~~~~~~~~Ga~v~ 289 (298)
T 3hul_A 256 PRNLANKLQTSLQTL----E-I---DADVLLLDVEGSGAEVF 289 (298)
T ss_dssp CGGGHHHHHHHHHTT----C-C---SSEEEEEEBCCCCCEEE
T ss_pred CHHHHHHHHHHHHhc----C-C---CcEEEEcccCCCceEEE
Confidence 977777776666542 1 1 1367888866 698776
No 19
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=98.68 E-value=7e-08 Score=91.81 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=77.1
Q ss_pred HHHHHHHHhhccchhhhhHHHHHHHHHHh----HHHHhhcCC---CCChHHHHHHHHHH---HcCCceEEEeCCCCcceE
Q psy7887 187 RVERFLSVCRSDISEEQKLQQLGTLMNQS----HTSLATKYE---CSHEALDSLVTCFR---EAGAYGARLTGAGWGGCV 256 (315)
Q Consensus 187 RV~~~~~al~~~~l~~~d~~~LG~LM~~S----H~SLr~lye---~S~peLD~Lv~iA~---~~Ga~GaRlTGAGfGGcv 256 (315)
|+..+..++ .++|++.||++|... |..++..+. --.|+++++++.++ +.|++|+.++|+| +|+
T Consensus 221 ~~~~l~~Al-----~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv 293 (332)
T 3qt5_A 221 DLNEAKEAV-----KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNV 293 (332)
T ss_dssp HHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCE
T ss_pred HHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcE
Confidence 677777776 789999999999844 555555321 13599999998885 7899999999665 999
Q ss_pred EEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEe-eCCCceEEE
Q psy7887 257 VALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTT-KPQTGAIIF 301 (315)
Q Consensus 257 vaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t-~p~~GA~i~ 301 (315)
++|++.+.++++.++|++.|.. ..++++ .|+.|++++
T Consensus 294 ~~l~~~~~a~~v~~~l~~~~~~--------~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 294 KVLVEKKNKQAVMEQFLKVFDE--------SKIIASDIISSGVEII 331 (332)
T ss_dssp EEEEEHHHHHHHHHHHHTTSCG--------GGEEEEEBCSSCCEEC
T ss_pred EEEECHHHHHHHHHHHHHhCCC--------ceEEEeccccCCcEec
Confidence 9999987778888888765422 367788 899999875
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=98.12 E-value=6.3e-06 Score=77.35 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=67.7
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC-cHH
Q psy7887 188 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS-SCE 266 (315)
Q Consensus 188 V~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~ 266 (315)
+..+..++ .++|++.|+++|...-+..+. ..+|+++++++.+++.|++|++|||+| +|+++|++.. .++
T Consensus 203 ~~~~~~al-----~~~d~~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~~~~a~ 272 (306)
T 3pyf_A 203 PGPVLAAL-----AAGDPDQLAPLLGNEMQAAAV---SLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSAI 272 (306)
T ss_dssp HHHHHHHH-----HHTCHHHHGGGCEETTHHHHH---HHCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESSHHHHH
T ss_pred HHHHHHHH-----HhCCHHHHHHHhccchHHHHH---HhChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCCHHHHH
Confidence 44455555 788999999988422122221 146999999999999999999999988 9999999764 355
Q ss_pred HHHHHHHHHhhhccCCCCCCCeEEEee-CCCceEEEe
Q psy7887 267 ALVTQVQAKFYTDQRTSSKPDLIFTTK-PQTGAIIFQ 302 (315)
Q Consensus 267 ~~ie~l~~~Y~~~~~~~~~~~~vf~t~-p~~GA~i~~ 302 (315)
++.+.+++. .. ...++++. +..||++..
T Consensus 273 ~~~~~l~~~----g~----~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 273 DVGAQLSGA----GV----CRTVRVATGPVPGARVVS 301 (306)
T ss_dssp HHHHHHHHT----TS----SSEEEEEEECCBCSEEC-
T ss_pred HHHHHHHhc----CC----cceEEEeecCCCCCEEec
Confidence 666666542 11 13566665 677998863
No 21
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.11 E-value=2.6e-05 Score=76.28 Aligned_cols=86 Identities=14% Similarity=0.046 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCCh-------HHHHHHHHHHH----cC-CceEEEeCCCC
Q psy7887 185 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHE-------ALDSLVTCFRE----AG-AYGARLTGAGW 252 (315)
Q Consensus 185 a~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~p-------eLD~Lv~iA~~----~G-a~GaRlTGAGf 252 (315)
..|+..++.++ .++|++.||++|.++|..+...|..++| ....+++.+.+ .| ++++-++|+|
T Consensus 251 ~~~~~~l~~AL-----~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG- 324 (416)
T 1fi4_A 251 PKRFEVMRKAI-----VEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG- 324 (416)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS-
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC-
Confidence 35777777776 8899999999999888887765544444 56777766544 38 6788899887
Q ss_pred cceEEEeccCCcHHHHHHHHHHHhh
Q psy7887 253 GGCVVALSDKSSCEALVTQVQAKFY 277 (315)
Q Consensus 253 GGcvvaLv~~~~~~~~ie~l~~~Y~ 277 (315)
+++++|++.+..+++.+++++.|.
T Consensus 325 -Ptv~al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 325 -PNAVLYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp -SCEEEEEEGGGHHHHHHHHHHHHT
T ss_pred -CcEEEEECHHHHHHHHHHHHHhcc
Confidence 999999988888889999988775
No 22
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=97.71 E-value=0.00043 Score=66.64 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHh----HHHHhhc--C-CCCChHHHHHHHHHHHc----C-CceEEEeCCCC
Q psy7887 185 AYRVERFLSVCRSDISEEQKLQQLGTLMNQS----HTSLATK--Y-ECSHEALDSLVTCFREA----G-AYGARLTGAGW 252 (315)
Q Consensus 185 a~RV~~~~~al~~~~l~~~d~~~LG~LM~~S----H~SLr~l--y-e~S~peLD~Lv~iA~~~----G-a~GaRlTGAGf 252 (315)
..|+..++.++ .++|++.||++|.++ |..+++. | .--.|....+++.+.+. | ++|+-++|+|
T Consensus 222 ~~~~~~l~~Al-----~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG- 295 (380)
T 2hke_A 222 PERMKIASRAI-----KARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG- 295 (380)
T ss_dssp HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS-
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC-
Confidence 45666666776 889999999999654 4434433 1 12457778888876654 8 7788998665
Q ss_pred cceEEEeccCCcHHHHHHHHHHHhhhccC------------------CCC----------CCCeEEEeeCCCceEEE
Q psy7887 253 GGCVVALSDKSSCEALVTQVQAKFYTDQR------------------TSS----------KPDLIFTTKPQTGAIIF 301 (315)
Q Consensus 253 GGcvvaLv~~~~~~~~ie~l~~~Y~~~~~------------------~~~----------~~~~vf~t~p~~GA~i~ 301 (315)
.++++|++.+..+++.+++++.|..... ... .-..++.+++|.|.+++
T Consensus 296 -Ptv~~l~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 371 (380)
T 2hke_A 296 -ANCFLFVLKEDLPEAVAMLMEHFPTPFEKFFFGDRELLEKVKVVSLPDEYKKLIDHPKKPFEMLLQSPVGCGVKYL 371 (380)
T ss_dssp -SCEEEEEEGGGHHHHHHHHHHHSCCCGGGEEESCHHHHHHHHHCCCCGGGSSCSCCCCCCCSEEEEEEBCCCCEEE
T ss_pred -CcEEEEECHHHHHHHHHHHHHhcccccccccccchhhhccccccCCChhhhhhhhccCCCceEEEEcCCCCCCEec
Confidence 8999999887788899999887653200 000 01268899999999887
No 23
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=97.69 E-value=4.7e-05 Score=69.40 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC-cHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCc
Q psy7887 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTG 297 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~G 297 (315)
++|++|.+++.+++.|++|++|||+| +|+++|++.+ .++++.+++.+ . . .+|++++++|
T Consensus 209 ~~p~l~~l~~~~~~~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~~----~------~-~~~~~~~~~g 268 (275)
T 1uek_A 209 LFPELKEVRGRMRALGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALRA----W------G-RAWAGTLGGG 268 (275)
T ss_dssp HCTHHHHHHHHHHHTTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHTT----T------S-EEEEEEECCC
T ss_pred hChHHHHHHHHHHhCCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhhh----c------c-EEEEEEecCC
Confidence 46999999999999999999999998 7999999864 45555555543 1 2 5788887765
No 24
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=97.21 E-value=0.0023 Score=63.13 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHH----hHHHHhhc--C-CCCChHHHHHHHHHHHc-----CCceEEEeCCCC
Q psy7887 185 AYRVERFLSVCRSDISEEQKLQQLGTLMNQ----SHTSLATK--Y-ECSHEALDSLVTCFREA-----GAYGARLTGAGW 252 (315)
Q Consensus 185 a~RV~~~~~al~~~~l~~~d~~~LG~LM~~----SH~SLr~l--y-e~S~peLD~Lv~iA~~~-----Ga~GaRlTGAGf 252 (315)
..|+..++.++ .++|++.||++|.. -|.-++.- | .-=.|+...+++.+++. |++++-++|||
T Consensus 248 ~~~~~~l~~AL-----~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG- 321 (414)
T 3f0n_A 248 PERMKEMTRCI-----QEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG- 321 (414)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS-
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC-
Confidence 46666677776 88999999998763 46767762 1 11257877777777764 78999999999
Q ss_pred cceEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 253 GGCVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 253 GGcvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..+++|++++..+++.+.|.+.|..
T Consensus 322 -Pnv~vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 322 -PNAVIFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp -SCEEEEEEHHHHHHHHHHHHHHSCC
T ss_pred -CCEEEEEecccHHHHHHHHHHhcCC
Confidence 7788888888999999999876654
No 25
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=97.06 E-value=0.0022 Score=61.15 Aligned_cols=86 Identities=10% Similarity=0.060 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHh----HHHHhhc--C-CCCChHHHHHHHHHHH----cCCceEEEeCCCCc
Q psy7887 185 AYRVERFLSVCRSDISEEQKLQQLGTLMNQS----HTSLATK--Y-ECSHEALDSLVTCFRE----AGAYGARLTGAGWG 253 (315)
Q Consensus 185 a~RV~~~~~al~~~~l~~~d~~~LG~LM~~S----H~SLr~l--y-e~S~peLD~Lv~iA~~----~Ga~GaRlTGAGfG 253 (315)
..|+..++.++ .++|++.||++|... |.-++.. | .-=.|+...+++.+.+ .|++|+-++|||
T Consensus 213 ~~~~~~l~~AL-----~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG-- 285 (323)
T 3lto_A 213 EANLKLLLNAF-----ENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG-- 285 (323)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--
Confidence 46777777776 889999999987644 5555542 1 1124777777776655 589999999999
Q ss_pred ceEEEeccCCcHHHHHHHHHHHhh
Q psy7887 254 GCVVALSDKSSCEALVTQVQAKFY 277 (315)
Q Consensus 254 GcvvaLv~~~~~~~~ie~l~~~Y~ 277 (315)
+.+++|++++..+++.+.|.+.+.
T Consensus 286 Pnv~~l~~~~~~~~v~~~l~~~~~ 309 (323)
T 3lto_A 286 PNVHLLYRSDQTDLARQFKSDHLV 309 (323)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHTT
T ss_pred CCeEEEEecccHHHHHHHHHHHhH
Confidence 667777888899999999987653
No 26
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=96.94 E-value=0.0003 Score=64.08 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHH-HHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEE-EeCCCCcceEEEeccCCc
Q psy7887 201 EEQKLQQLGTLM-NQSHTSLATKYECSHEALDSLVTCFREAGAYGAR-LTGAGWGGCVVALSDKSS 264 (315)
Q Consensus 201 ~~~d~~~LG~LM-~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaR-lTGAGfGGcvvaLv~~~~ 264 (315)
..+|++.||++| +.-|.... .++|+++++++.+++.|+ ++ |||+| +|+++|++.+.
T Consensus 196 ~~~d~~~~~~~~~n~l~~~~~----~~~p~l~~~~~~~~~~Ga--a~~mSGsG--~~v~~l~~~~~ 253 (271)
T 2v8p_A 196 IQRIISGEVEEIENVLGDIAR----ELYPEINEVYRFVEYLGF--KPFVSGSG--STVYFFGGASE 253 (271)
T ss_dssp HHHHHTTCGGGCCBHHHHHHH----HHCHHHHHHHHHHHHTTC--CCEECTTS--SCEEESSCCCH
T ss_pred hcCCHHHHHHHHhCChhhHhH----HhChHHHHHHHHHHhCCC--ccCccccC--cCeEEEeCCHH
Confidence 678888888887 33333322 257999999999999997 89 99998 89999998653
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=95.21 E-value=0.008 Score=55.29 Aligned_cols=43 Identities=30% Similarity=0.501 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCc-HHHHHHHH
Q psy7887 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSS-CEALVTQV 272 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~-~~~~ie~l 272 (315)
.+|+++++++.+++.| |++|+|+| +|+++|++.+. ++++.+++
T Consensus 218 ~~p~l~~i~~~~~~~G--~a~~SGsG--~tvf~l~~~~~~a~~~~~~l 261 (283)
T 2ww4_A 218 RFREVDAVLSWLLEYA--PSRLTGTG--ACVFAEFDTESEARQVLEQA 261 (283)
T ss_dssp HCHHHHHHHHHHHTTS--CEEECTTS--SCEEEEESSHHHHHHHHHHC
T ss_pred cChHHHHHHHHHHHcC--CceECCcc--cceEEEeCCHHHHHHHHHHh
Confidence 4799999999999998 89999997 99999997542 44444443
No 28
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=61.39 E-value=23 Score=27.91 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHcCCceE---EEeCCCC-cc------------------eEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 228 EALDSLVTCFREAGAYGA---RLTGAGW-GG------------------CVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga---RlTGAGf-GG------------------cvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..+|.+.+...++|+.|. ...|-|- +| -+..+|+.+.++.+++++.+..+.
T Consensus 11 ~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 11 EKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 468899999999987763 4444442 11 477788999999999999997654
No 29
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=60.85 E-value=26 Score=27.41 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHcCCceE---EEeCCCC-cc------------------eEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 227 HEALDSLVTCFREAGAYGA---RLTGAGW-GG------------------CVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 227 ~peLD~Lv~iA~~~Ga~Ga---RlTGAGf-GG------------------cvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
...+|.+.+...+.|+.|. ...|-|- +| -+..+|+.+.++++++++.+..+.
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQT 83 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3468899999999987763 3334332 11 366677888999999999998754
No 30
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=57.03 E-value=34 Score=27.57 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHcCCceE---EEeCCCCcc-----------eEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 226 SHEALDSLVTCFREAGAYGA---RLTGAGWGG-----------CVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 226 S~peLD~Lv~iA~~~Ga~Ga---RlTGAGfGG-----------cvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..+.+|.+.+++.+.|+-|. .+.|-|-.+ -+..+++.+.++++++++.+..+.
T Consensus 33 r~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 33 ESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp EGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 34678999999999987774 333444211 466677888999999999976543
No 31
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=56.82 E-value=29 Score=27.61 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHcCCceE---EEeCCCC-cce------------------EEEeccCCcHHHHHHHHHHHhhh
Q psy7887 227 HEALDSLVTCFREAGAYGA---RLTGAGW-GGC------------------VVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 227 ~peLD~Lv~iA~~~Ga~Ga---RlTGAGf-GGc------------------vvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
...+|.+.+...++|+.|. ...|-|- +|. +..+|+.+.++++++++.+..+.
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3468999999999988773 3444442 221 56778889999999999998754
No 32
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=54.37 E-value=23 Score=26.55 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 64 KEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 64 ~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+.+.+.+.+.+++.+.+.+|+++.+|++...|..
T Consensus 5 ~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r 38 (103)
T 3lsg_A 5 ELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSI 38 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHH
Confidence 4566778888887789999999999999998874
No 33
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=52.81 E-value=39 Score=26.41 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHcCCceE---EEeCCCC-cc------------------eEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 228 EALDSLVTCFREAGAYGA---RLTGAGW-GG------------------CVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga---RlTGAGf-GG------------------cvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..+|.+.+...++|+.|. ...|-|- +| -+..+|+.+.++++++++.+..+.
T Consensus 13 ~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 85 (114)
T 3bzq_A 13 FTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAART 85 (114)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 467899999999887663 4444442 22 266677888999999999998754
No 34
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=49.64 E-value=53 Score=26.97 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHcCCceE---EEeCCCCc-c-------------------eEEEeccCCcHHHHHHHHHHHhhhccCCCC
Q psy7887 228 EALDSLVTCFREAGAYGA---RLTGAGWG-G-------------------CVVALSDKSSCEALVTQVQAKFYTDQRTSS 284 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga---RlTGAGfG-G-------------------cvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~ 284 (315)
..+|.+.+...+.|+.|. ...|-|-. | -+..+|+.+.++++++.+.+..+.....
T Consensus 23 ~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~tg~~G-- 100 (135)
T 2o66_A 23 WRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEIG-- 100 (135)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSSTT--
T ss_pred HHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCCCCCC--
Confidence 457899999999988773 44454432 2 3566778899999999999987653221
Q ss_pred CCCeEEEee
Q psy7887 285 KPDLIFTTK 293 (315)
Q Consensus 285 ~~~~vf~t~ 293 (315)
+..+|++.
T Consensus 101 -dGkIFV~p 108 (135)
T 2o66_A 101 -DGKIFVLP 108 (135)
T ss_dssp -CCEEEEEE
T ss_pred -CEEEEEEE
Confidence 23566553
No 35
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=49.32 E-value=67 Score=25.24 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHcCCce---EEEeCCCCcc-------------------eEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 227 HEALDSLVTCFREAGAYG---ARLTGAGWGG-------------------CVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 227 ~peLD~Lv~iA~~~Ga~G---aRlTGAGfGG-------------------cvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
...+|.+.+...++|+.| +...|-|--+ -+..+|+.+.++++++++.+..+.
T Consensus 14 ~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 87 (116)
T 2ns1_B 14 PFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYT 87 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 346889999999988766 3455555311 344556788999999999998765
No 36
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=48.63 E-value=46 Score=26.07 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHcCCceE---EEeCCCC-cc------------------eEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 228 EALDSLVTCFREAGAYGA---RLTGAGW-GG------------------CVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga---RlTGAGf-GG------------------cvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..+|.+.+...++|+.|. ...|-|- .| -+..+|+.+.++++++++.+..+.
T Consensus 13 ~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~t 85 (114)
T 2gw8_A 13 FKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARS 85 (114)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 468899999999987763 3444442 12 344456778899999999998754
No 37
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=47.51 E-value=68 Score=25.71 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHcCCce---EEEeCCCCc-c------------------eEEEeccCCcHHHHHHHHHHHhhhccCCCCC
Q psy7887 228 EALDSLVTCFREAGAYG---ARLTGAGWG-G------------------CVVALSDKSSCEALVTQVQAKFYTDQRTSSK 285 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~G---aRlTGAGfG-G------------------cvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~ 285 (315)
..+|.+.+...+.|+.| +...|-|-- | -+...|+.+.++++++.+.+.-+. +. .-
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~T--G~-~G 87 (119)
T 3ncq_A 11 EKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFT--GS-PG 87 (119)
T ss_dssp TTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCC--SS-TT
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcC--CC-CC
Confidence 46889999999998877 345555531 2 245567888999999999986443 22 11
Q ss_pred CCeEEEee
Q psy7887 286 PDLIFTTK 293 (315)
Q Consensus 286 ~~~vf~t~ 293 (315)
+..+|++.
T Consensus 88 DGkIFV~~ 95 (119)
T 3ncq_A 88 DGKIFIIP 95 (119)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEE
Confidence 24566553
No 38
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=46.51 E-value=68 Score=24.88 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCCceE---EEeCCCC-cc------------------eEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 228 EALDSLVTCFREAGAYGA---RLTGAGW-GG------------------CVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga---RlTGAGf-GG------------------cvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
..+|.+.+...++|+.|. ...|-|- +| -+..+|+.+.++++++++.+..+.
T Consensus 11 ~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 11 FKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 468899999999987763 4445442 22 344456778899999999998754
No 39
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=43.59 E-value=49 Score=26.29 Aligned_cols=62 Identities=29% Similarity=0.467 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCce---EEEeCCC----C-cc-----------eEEEec-cCCcHHHHHHHHHHHhhhccCCCCCCC
Q psy7887 228 EALDSLVTCFREAGAYG---ARLTGAG----W-GG-----------CVVALS-DKSSCEALVTQVQAKFYTDQRTSSKPD 287 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~G---aRlTGAG----f-GG-----------cvvaLv-~~~~~~~~ie~l~~~Y~~~~~~~~~~~ 287 (315)
..+|.+.++..+.|+-| +...|-| | |+ -+..+| +++.++.+++.+.+.|+..+. .
T Consensus 16 ~kl~~V~~aL~~~Gv~G~TV~~v~G~G~q~~~~~~~~~~~~~~~kvkieivv~~de~vd~vv~~I~~~~~t~~~-----G 90 (111)
T 3dfe_A 16 VLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKIADQVAIKFFTDYA-----G 90 (111)
T ss_dssp GGHHHHHHHHHHHTCSCCEEEEEBC------------------CEEEEEEEESSHHHHHHHHHHHHHHHTTTSC-----E
T ss_pred HHHHHHHHHHHHCCCCcEEEEecEeecCCCCCcCceEEEeccCCceEEEEEECCHHHHHHHHHHHHHHhhCCCC-----E
Confidence 46889999888888766 4555555 2 22 124556 467899999999887776543 3
Q ss_pred eEEEeeC
Q psy7887 288 LIFTTKP 294 (315)
Q Consensus 288 ~vf~t~p 294 (315)
.+|++..
T Consensus 91 ~ifVsdV 97 (111)
T 3dfe_A 91 IIYICEA 97 (111)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 6777754
No 40
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=36.55 E-value=1e+02 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 63 LKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 63 l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+..+++.+.+.+++ +.+.+++++.+|++...|..
T Consensus 9 ~~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r 42 (120)
T 3mkl_A 9 RTRVCTVINNNIAH-EWTLARIASELLMSPSLLKK 42 (120)
T ss_dssp HHHHHHHHHTSTTS-CCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHCcCHHHHHH
Confidence 45566777777765 68999999999999998874
No 41
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=36.45 E-value=27 Score=25.61 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=11.9
Q ss_pred ccCcccccCCccee
Q psy7887 8 SSPFHSCSGSASLL 21 (315)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (315)
+||-|+|++|...+
T Consensus 2 ~~~~~~~~~~~~~~ 15 (94)
T 2kz2_A 2 GSHHHHHHGSSGEN 15 (94)
T ss_dssp CCSCCCSCCSSCCT
T ss_pred CcccccccCcccHH
Confidence 68999999998765
No 42
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=34.26 E-value=48 Score=24.88 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 63 LKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 63 l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+..+++.+.+.++..+.+.+++++.+|++...|..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r 39 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSH 39 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHH
Confidence 55677888888876778999999999999998875
No 43
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=33.98 E-value=1.3e+02 Score=24.00 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHcCCceE---EEeCCCC-cc------------------eEEEeccCCcHHHHHHHHHHHhh
Q psy7887 228 EALDSLVTCFREAGAYGA---RLTGAGW-GG------------------CVVALSDKSSCEALVTQVQAKFY 277 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga---RlTGAGf-GG------------------cvvaLv~~~~~~~~ie~l~~~Y~ 277 (315)
..+|.+.+...+.|+.|. ...|-|- +| -+...|+.+.++++++.+.+.-+
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~ 82 (118)
T 3t9z_A 11 EKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSAR 82 (118)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhc
Confidence 468899999999988773 4455553 12 24556678899999999998644
No 44
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=33.35 E-value=58 Score=24.65 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 63 LKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 63 l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+..+++.+.+.+++. .+.+++++.+|++...|..
T Consensus 9 i~~~~~~i~~~~~~~-~~~~~lA~~~~~S~~~l~r 42 (113)
T 3oio_A 9 LTEAVSLMEANIEEP-LSTDDIAYYVGVSRRQLER 42 (113)
T ss_dssp HHHHHHHHHTCSSSC-CCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhhhcCC-CCHHHHHHHHCcCHHHHHH
Confidence 456677777776554 8999999999999988864
No 45
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=30.92 E-value=76 Score=24.71 Aligned_cols=76 Identities=8% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHhhcCCCccccccchhhhHHhhhcCHHHHH-----HHHHHhcCCCCCCHHHHH----------------HHhcCChhhh
Q psy7887 37 IAKKKDVDNWKDILYLGELQTKLAVSLKEMI-----DIADAILHPEAYTKEEVQ----------------EILEVSEEEL 95 (315)
Q Consensus 37 La~~~gl~~~~~~~~L~~~q~~~~~~l~~~~-----~~~~~~l~~~~yt~~ei~----------------~~l~~~~~~l 95 (315)
||..+|+ ....+.++ +.+..|.+..+.+ ..+...|....++..||+ +..|+++.++
T Consensus 33 lA~~~~~-S~~~l~r~--fk~~~G~s~~~~l~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~~y 109 (129)
T 1bl0_A 33 VSERSGY-SKWHLQRM--FKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKY 109 (129)
T ss_dssp HHHHSSS-CHHHHHHH--HHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHCc-CHHHHHHH--HHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHHHH
Q ss_pred hcccCCCCcccccccccccc
Q psy7887 96 DSDILTPNTRSVASFKVKQP 115 (315)
Q Consensus 96 ~~~i~~~nt~~~~~f~~~~~ 115 (315)
.......+.+....+.+++|
T Consensus 110 R~~~~~~~~~~~~pl~~y~~ 129 (129)
T 1bl0_A 110 RMTNMQGESRFLHPLNHYNS 129 (129)
T ss_dssp HTCSSCCSTTCCCCC-----
T ss_pred HHHHHhcccccCCccccCCC
No 46
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=29.71 E-value=1e+02 Score=24.81 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCCceEEEeCCCCcc-----eEEEeccCCcHHHHHHHHHHHhhhcc
Q psy7887 228 EALDSLVTCFREAGAYGARLTGAGWGG-----CVVALSDKSSCEALVTQVQAKFYTDQ 280 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~GaRlTGAGfGG-----cvvaLv~~~~~~~~ie~l~~~Y~~~~ 280 (315)
..+|.+.+...+.|..|-+++-.|++| .+...|+.+.++++++.+.+.-+.+.
T Consensus 16 ~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR~ 73 (114)
T 3m05_A 16 KDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTRE 73 (114)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCce
Confidence 357888888888998887766543322 33445678899999999998765543
No 47
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=28.63 E-value=2.2e+02 Score=22.50 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCCce---EEEeCCCC-cc------------------eEEEeccCCcHHHHHHHHHHHhh
Q psy7887 228 EALDSLVTCFREAGAYG---ARLTGAGW-GG------------------CVVALSDKSSCEALVTQVQAKFY 277 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~G---aRlTGAGf-GG------------------cvvaLv~~~~~~~~ie~l~~~Y~ 277 (315)
..+|.+.+...+.|+.| +...|-|- +| -+...|+.+.++++++.+.+.-+
T Consensus 11 ~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~ 82 (116)
T 4aff_A 11 FKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAAR 82 (116)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 46888899888888777 45555553 23 23455678899999999998644
No 48
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=26.07 E-value=86 Score=23.47 Aligned_cols=34 Identities=3% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 63 LKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 63 l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+..+++.+.+.+++ +.+.+++++.+|++...|..
T Consensus 7 i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r 40 (108)
T 3oou_A 7 IQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQ 40 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHH
Confidence 45677888888866 68999999999999998875
No 49
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=24.49 E-value=14 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=26.4
Q ss_pred CcccccCCcceeeecCCchHHHHHHHHHHhhcCC
Q psy7887 10 PFHSCSGSASLLVTTDSIPTAKKTLDIIAKKKDV 43 (315)
Q Consensus 10 ~~~~~~~~~~~~~~~~rVvEcrlAa~~La~~~gl 43 (315)
....|||.|..--.---+|-| +||-+||.-.|.
T Consensus 15 aiagcsgaatfgglaggivgc-iaagilailqgf 47 (63)
T 1kvd_A 15 AIAGCSGAATFGGLAGGIVGC-IAAGILAILQGF 47 (63)
T ss_dssp CBCCCSSCCCCTTCCSHHHHH-HHHHHHHHHHHH
T ss_pred HHhCCccchhcccccchHHHH-HHHHHHHHHhcc
Confidence 356899999888778888988 788899876654
No 50
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=23.96 E-value=84 Score=25.08 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHcCCceEEE-eC-CCCcc------------------eEEEeccCCcHHHHHHHHHHH
Q psy7887 228 EALDSLVTCFREAGAYGARL-TG-AGWGG------------------CVVALSDKSSCEALVTQVQAK 275 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~GaRl-TG-AGfGG------------------cvvaLv~~~~~~~~ie~l~~~ 275 (315)
|-.++|++.+++.|.-|+-+ -| .|||. .+....++++++.+.+.+.+-
T Consensus 30 pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~ 97 (114)
T 1o51_A 30 PLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 97 (114)
T ss_dssp EHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred EHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 66799999999998877655 22 23333 344444667888888888763
No 51
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=23.71 E-value=30 Score=22.10 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=16.6
Q ss_pred ccccCcccccCCcceeeecCC
Q psy7887 6 SISSPFHSCSGSASLLVTTDS 26 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~r 26 (315)
|...|||-|.---|+.|--+|
T Consensus 4 sfrrpfhecalcysitdpger 24 (36)
T 2jyp_A 4 SFRRPFHECALCYSITDPGER 24 (36)
T ss_dssp SSTTTTTCCSSSTTTTTTTCT
T ss_pred cccCccchheeEEeecCcchh
Confidence 567899999888777776665
No 52
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=23.66 E-value=1e+02 Score=23.00 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 63 LKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 63 l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+..+++.+.+.+++ +.+.+++++.+|++...|..
T Consensus 4 i~~~~~~i~~~~~~-~~~~~~lA~~~~~s~~~l~r 37 (108)
T 3mn2_A 4 VRQVEEYIEANWMR-PITIEKLTALTGISSRGIFK 37 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHcccC-CCCHHHHHHHHCCCHHHHHH
Confidence 45667777888755 48999999999999998875
No 53
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=22.61 E-value=1e+02 Score=29.00 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHH
Q psy7887 224 ECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAK 275 (315)
Q Consensus 224 e~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~ 275 (315)
.+|...+..|.++|.+.|..-.|+| ..+...+.-++.++++++++.|.+.
T Consensus 61 ~lt~~qlr~ladiA~kyg~G~lrlT--trqni~l~gv~~~~l~~l~~~L~~~ 110 (366)
T 3mm5_B 61 LLSIYTVRELCDIADKYSDGYLRWT--SRNNVEFFVTDESKIDDLINEVQER 110 (366)
T ss_dssp EEEHHHHHHHHHHHHHHSTTEEEEC--TTSCEEEEESCGGGHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCeEEEc--CCCeEEEecCCHHHHHHHHHHHHHh
Confidence 3466789999999999987668999 4568888889999999999999886
Done!