Query psy7887
Match_columns 315
No_of_seqs 262 out of 1448
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 21:20:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7887.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7887hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1piea2 d.58.26.7 (A:214-396) 100.0 3.6E-39 2.6E-43 285.0 17.2 152 137-301 31-183 (183)
2 d1s4ea2 d.58.26.7 (A:181-351) 100.0 7.9E-38 5.8E-42 273.7 17.6 143 138-298 28-170 (171)
3 d1wuua2 d.58.26.7 (A:217-392) 100.0 8.7E-38 6.3E-42 274.1 16.2 147 138-302 28-175 (176)
4 d1kvka2 d.58.26.3 (A:226-394) 99.8 8.8E-21 6.4E-25 163.5 15.3 118 173-302 38-156 (169)
5 d1kkha2 d.58.26.3 (A:181-317) 99.8 2.5E-19 1.8E-23 150.4 10.2 92 177-277 37-128 (137)
6 d1k47a2 d.58.26.4 (A:195-329) 99.5 1.5E-14 1.1E-18 119.5 9.2 82 188-275 42-125 (135)
7 d1h72c2 d.58.26.1 (C:168-300) 98.2 5.1E-06 3.7E-10 67.8 10.3 98 183-301 34-133 (133)
8 d1ueka2 d.58.26.5 (A:149-268) 96.6 0.0012 8.6E-08 51.5 5.4 46 227-274 62-108 (120)
9 d1oj4a2 d.58.26.5 (A:164-283) 91.1 0.067 4.8E-06 41.5 3.3 43 227-273 56-99 (120)
10 d1piea2 d.58.26.7 (A:214-396) 78.3 0.32 2.4E-05 40.5 1.3 24 22-45 19-42 (183)
11 d2cz4a1 d.58.5.1 (A:1-100) Hyp 68.7 8.6 0.00063 28.1 7.4 60 228-292 16-89 (100)
12 d1fi4a2 d.58.26.2 (A:191-393) 68.7 23 0.0017 29.4 11.0 96 174-278 32-139 (203)
13 d1rp3a1 a.4.13.1 (A:87-163) Si 53.9 7.1 0.00052 26.9 4.2 33 64-97 13-45 (77)
14 d1ku3a_ a.4.13.2 (A:) Sigma70 47.0 10 0.00074 25.5 3.9 24 74-97 24-47 (61)
15 d3c7bb2 d.58.36.2 (B:4-122) Di 44.7 17 0.0013 27.8 5.5 49 225-275 59-107 (119)
16 d1zj8a1 d.58.36.1 (A:327-406) 41.4 13 0.00094 25.7 3.9 50 223-274 25-74 (80)
17 d2v4jb2 d.58.36.2 (B:2-135) Di 41.4 13 0.00094 29.1 4.3 49 225-275 72-120 (134)
18 d1aopa1 d.58.36.1 (A:81-145) S 36.2 11 0.00084 25.3 2.8 49 224-274 10-59 (65)
19 d1bl0a1 a.4.1.8 (A:9-62) MarA 35.2 15 0.0011 23.2 3.1 35 62-97 4-38 (54)
20 d1s4ea2 d.58.26.7 (A:181-351) 33.1 3.6 0.00026 33.4 -0.5 18 22-39 19-36 (171)
21 d1l0oc_ a.4.13.2 (C:) SigmaF { 33.1 24 0.0018 23.0 4.0 26 71-97 25-50 (57)
22 d1wuua2 d.58.26.7 (A:217-392) 32.3 3.2 0.00023 33.7 -1.0 18 22-39 19-36 (176)
23 d1xrsb2 d.230.4.1 (B:33-84) D- 28.1 16 0.0011 24.2 2.2 17 29-45 15-31 (52)
24 d1i5za1 a.4.5.4 (A:138-206) Ca 27.3 18 0.0013 24.0 2.6 19 78-96 29-47 (69)
25 d1ttya_ a.4.13.2 (A:) Sigma70 26.9 30 0.0022 24.7 3.9 23 75-97 35-57 (87)
26 d1vfja_ d.58.5.1 (A:) PII (pro 26.6 1.1E+02 0.0081 22.3 7.8 64 229-295 12-97 (116)
27 d2a6ca1 a.35.1.13 (A:1-69) HTH 26.2 26 0.0019 23.2 3.3 32 65-96 6-37 (69)
28 d1d5ya1 a.4.1.8 (A:3-56) Rob t 26.1 20 0.0015 22.6 2.5 34 63-97 5-38 (54)
29 d1utxa_ a.35.1.3 (A:) Putative 26.1 20 0.0014 23.5 2.6 46 52-97 17-62 (66)
30 d1u9la_ a.60.4.2 (A:) Transcri 24.8 20 0.0015 24.8 2.5 61 120-183 3-64 (68)
31 d3e5ua1 a.4.5.4 (A:148-227) Ch 22.9 27 0.0019 23.7 2.8 20 77-96 29-48 (80)
32 d2p7vb1 a.4.13.2 (B:546-613) S 22.0 37 0.0027 23.1 3.4 22 76-97 23-44 (68)
33 d1rp3a2 a.4.13.2 (A:164-234) S 21.5 45 0.0033 21.6 3.8 21 77-97 36-56 (71)
34 d1o51a_ d.58.5.4 (A:) Hypothet 21.4 53 0.0039 23.8 4.5 47 228-274 20-86 (102)
35 d1r71a_ a.4.14.1 (A:) Transcri 20.7 61 0.0045 23.3 4.8 32 65-97 18-49 (114)
36 d1mg7a2 d.58.26.6 (A:188-380) 20.4 90 0.0065 25.1 5.9 99 208-312 72-184 (193)
No 1
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=100.00 E-value=3.6e-39 Score=285.04 Aligned_cols=152 Identities=28% Similarity=0.428 Sum_probs=138.8
Q ss_pred hhhhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhH
Q psy7887 137 NTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSH 216 (315)
Q Consensus 137 ~~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH 216 (315)
.+.+++.+|++.|||++.++|.... ..+.+..+++||+||++|+.||.+++++| +++|++.||+||++||
T Consensus 31 ~~~v~~~~~~~~L~~v~~~~l~~~~-----~~l~d~~~~rRa~Hvv~En~Rv~~a~~al-----~~~d~~~~G~lm~~Sh 100 (183)
T d1piea2 31 LKRMQTRLDIQSLGELSNEEFDANT-----DLIGDETLIKRARHAVYENNRTKIAQKAF-----VAGNLTKFGELLNASH 100 (183)
T ss_dssp HHHHHHHCCCSSGGGCCHHHHHHTG-----GGTCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcchHhhhcHHHHHHHH-----hhcCCHHHHHHHHHHHHHHHHHHHhhhhh-----hhccHHHHHHHHHHHH
Confidence 3445667899999999999998743 34556789999999999999999999998 8899999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHc-CCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCC
Q psy7887 217 TSLATKYECSHEALDSLVTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQ 295 (315)
Q Consensus 217 ~SLr~lye~S~peLD~Lv~iA~~~-Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~ 295 (315)
.||+++|++|||++|.||+++++. |++||||||||||||+|+|+|.+.+++|+++|.+.|+++++. .+.+|+++|+
T Consensus 101 ~sl~~~~evs~~elD~Lv~~a~~~~G~~GaRmtGgGfGGcvialv~~~~~~~~~~~i~~~y~~~~g~---~~~~~~~~~~ 177 (183)
T d1piea2 101 ASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVGY---PASFYVAQIG 177 (183)
T ss_dssp HHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHSS---CCEEEECCBC
T ss_pred HHHHHHhcCCCchHHHHHHHHHHhCCCeEeeccccCCCceEEEEecHHHHHHHHHHHHHHHHHhhCC---CCcEEEEecC
Confidence 999999999999999999999876 999999999999999999999999999999999999999876 4689999999
Q ss_pred CceEEE
Q psy7887 296 TGAIIF 301 (315)
Q Consensus 296 ~GA~i~ 301 (315)
+||+++
T Consensus 178 ~Ga~~i 183 (183)
T d1piea2 178 SGSTKL 183 (183)
T ss_dssp CCSBCC
T ss_pred CCceeC
Confidence 999863
No 2
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00 E-value=7.9e-38 Score=273.70 Aligned_cols=143 Identities=29% Similarity=0.429 Sum_probs=133.7
Q ss_pred hhhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHH
Q psy7887 138 TRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHT 217 (315)
Q Consensus 138 ~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~ 217 (315)
.++++.||++.||+++.++|.+ | +..+++|++||++||.||.+++++| +.+|++.||+||++||.
T Consensus 28 ~~a~~~lg~~~l~~~~~~~l~~--l--------~~~~~~Ra~Hvv~En~Rv~~~~~al-----~~~d~~~~G~lm~~sh~ 92 (171)
T d1s4ea2 28 EESLRILGKESSKEVTEKDLGK--L--------PPLHRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHW 92 (171)
T ss_dssp HHHHHHHTCSCGGGCCHHHHHT--S--------CHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHhh--c--------CHHHHHHHHHHHHHHHHHHHHHHHh-----hcccHHHHHHHHHHHHH
Confidence 3578999999999999999864 2 2368999999999999999999998 78999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCc
Q psy7887 218 SLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTG 297 (315)
Q Consensus 218 SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~G 297 (315)
||+++|++|||++|.|+++|++.|++||||||||||||+|+|||.+.+++|+++|.+.|+++++. .+.+|+++|++|
T Consensus 93 sl~~~~evS~~eld~lv~~a~~~Ga~GaRmtGgGfGG~viaLv~~~~~~~~~~~i~~~y~~~~~~---~~~~~~~~p~~G 169 (171)
T d1s4ea2 93 DLAENYRVSCEELDFFVKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLAKFSW---KAKYFVVKPSDG 169 (171)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHHHHHCCS---CCEEEEECBCCC
T ss_pred HHHHhhccCCHHHHHHHHHHhhcccCceeeecCCCCcEEEEEecHHHHHHHHHHHHHHHHHhcCC---CCCEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998876 478999999999
Q ss_pred e
Q psy7887 298 A 298 (315)
Q Consensus 298 A 298 (315)
|
T Consensus 170 a 170 (171)
T d1s4ea2 170 V 170 (171)
T ss_dssp C
T ss_pred C
Confidence 7
No 3
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=8.7e-38 Score=274.05 Aligned_cols=147 Identities=29% Similarity=0.440 Sum_probs=133.3
Q ss_pred hhhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHH
Q psy7887 138 TRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHT 217 (315)
Q Consensus 138 ~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~ 217 (315)
.++|+.+|++.||+++.++|.... ..++ ...++|++||++|+.||.+++++| +++|++.||+||++||.
T Consensus 28 ~~aa~~lg~~~l~~~~~~~l~~~~-----~~l~-~~~~~Ra~Hv~~E~~Rv~~~~~al-----~~~d~~~lg~Lm~~sh~ 96 (176)
T d1wuua2 28 EEVARALGKESLREVQLEELEAAR-----DLVS-KEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHR 96 (176)
T ss_dssp HHHHHHTTCSSTTSCCHHHHTTGG-----GGSC-HHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccchhhccHHHHHHHH-----hhhc-cHHHHHHHHHHHHHHhhHHHHHHh-----hccCHHHHHHHHHHHHH
Confidence 357899999999999999987642 2344 378999999999999999999998 78999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHHHHHc-CCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCC
Q psy7887 218 SLATKYECSHEALDSLVTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQT 296 (315)
Q Consensus 218 SLr~lye~S~peLD~Lv~iA~~~-Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~ 296 (315)
||+++|++|||++|.||++|++. |++||||||||||||+|+||+.+.+++|++.+++.|.. .+.+|+++|++
T Consensus 97 sL~~~~~vS~peld~lv~~a~~~~G~lGaRltGaGfGGcviaLv~~~~~~~~~~~~~~~yg~-------~~~~~~~~~~~ 169 (176)
T d1wuua2 97 SLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGG-------TATFYLSQAAD 169 (176)
T ss_dssp HHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHCSS-------CCEEEEECCCC
T ss_pred HHHHHHhccChhHHHHHHHHHhcCCCceeeeccCCCCcEEEEEechhhHHHHHHHHHHHhCC-------CCCEEEEecCC
Confidence 99999999999999999999996 99999999999999999999999999999999988732 35799999999
Q ss_pred ceEEEe
Q psy7887 297 GAIIFQ 302 (315)
Q Consensus 297 GA~i~~ 302 (315)
||+++.
T Consensus 170 Ga~~i~ 175 (176)
T d1wuua2 170 GAKVLC 175 (176)
T ss_dssp CSEECC
T ss_pred CceEcc
Confidence 999875
No 4
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.84 E-value=8.8e-21 Score=163.54 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCC
Q psy7887 173 KVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 252 (315)
Q Consensus 173 ~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGf 252 (315)
.+.++..|+..|+.++++.... ++..+|+..||++|+++|..|+.+ .+|||++|.|+++|++.| +|||||||||
T Consensus 38 ~~l~~~~~l~~~a~~~l~~~~~----~~~~~d~~~lg~lm~~~~~lL~~l-gVS~~~ld~lv~~a~~~g-~gaKltGAGg 111 (169)
T d1kvka2 38 PLLTSIDAISLECERVLGEMAA----APVPEQYLVLEELMDMNQHHLNAL-GVGHASLDQLCQVTAAHG-LHSKLTGAGG 111 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHTT-CEEEECSSCS
T ss_pred HHHHHHhHHHHHHHHHhhhhhh----hcccchHHHHHHHHHHhHHHHHhc-CcChHHHHHHHHHHHHcC-ccccccCCCC
Confidence 4678889999999998775433 246789999999999999999987 689999999999999999 7999999999
Q ss_pred cceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeC-CCceEEEe
Q psy7887 253 GGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKP-QTGAIIFQ 302 (315)
Q Consensus 253 GGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p-~~GA~i~~ 302 (315)
|||+|+|++++..+++++++.+.|.... + .+|.+++ ++|+++..
T Consensus 112 GGc~ial~~~~~~~~~~~~i~~~l~~~G-f-----~~~~~~i~~~Gv~i~~ 156 (169)
T d1kvka2 112 GGCGITLLKPGLERAKVEAAKQALTGCG-F-----DCWETSIGAPGVSMHS 156 (169)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHHTT-C-----EEEEEEESCCCSEEEC
T ss_pred CCeEEEEecccchHHHHHHHHHHHHHcC-C-----eEEEEecCCCcEEEec
Confidence 9999999999999999999999987764 2 4677775 58999875
No 5
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.78 E-value=2.5e-19 Score=150.40 Aligned_cols=92 Identities=27% Similarity=0.450 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceE
Q psy7887 177 RALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCV 256 (315)
Q Consensus 177 Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcv 256 (315)
+..+++.+..++.+ +++ ..+|++.||+||+++|.+++++ .+|+|++|.+++++++.| +||||||||+|||+
T Consensus 37 ~~~~i~~~~~~~~~--~al-----~~~d~~~lg~lm~~~~~~l~~l-gvs~~~id~l~~~~~~~g-~GaKitGAGgGG~~ 107 (137)
T d1kkha2 37 NKDEIFKEIDKVID--EAL-----KIKNKEDFGKLMTKNHELLKKL-NISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCV 107 (137)
T ss_dssp THHHHHHHHHHHHH--HHH-----HCCSHHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEE
T ss_pred hhhHHHHHHHHHHH--HHH-----HcCCHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHhcC-CCcccccCCCCcEE
Confidence 34466666666654 344 6789999999999999999975 789999999999999999 79999999999999
Q ss_pred EEeccCCcHHHHHHHHHHHhh
Q psy7887 257 VALSDKSSCEALVTQVQAKFY 277 (315)
Q Consensus 257 vaLv~~~~~~~~ie~l~~~Y~ 277 (315)
++|+|++..++++++|.++|.
T Consensus 108 ial~~~~~~~~~~~~l~~~~~ 128 (137)
T d1kkha2 108 IILVNEEKEKELLKELNKEDV 128 (137)
T ss_dssp EEECCGGGHHHHHHHHHTSSC
T ss_pred EEEeChhhHHHHHHHHHHcCc
Confidence 999999999999999987654
No 6
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=99.52 E-value=1.5e-14 Score=119.51 Aligned_cols=82 Identities=21% Similarity=0.195 Sum_probs=69.3
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhc-CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccC-CcH
Q psy7887 188 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATK-YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK-SSC 265 (315)
Q Consensus 188 V~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~l-ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~-~~~ 265 (315)
|.++.+++ ..+|++.||++|+++|..++.+ ..+|+|++|.|+++|++.| .|+|+||||+|||+++|++. +..
T Consensus 42 v~~~~~al-----~~~d~~~l~~~m~~~~~ll~~l~~~i~~~~l~~l~~~a~~~g-~~ak~~GaGgGG~~i~l~~~~~~~ 115 (135)
T d1k47a2 42 VVSLVEAL-----EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQ-AVAKSSGAGGGDCGIALSFDAQST 115 (135)
T ss_dssp HHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHTTTTSS-EEEEECSSCSSSEEEEEECSHHHH
T ss_pred HHHHHHHH-----HhCCHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHhc-cchhcccCcCCCeEEEEecChhhH
Confidence 44456666 7899999999999999999997 4679999999999999888 58999999999999999974 456
Q ss_pred HHHHHHHHHH
Q psy7887 266 EALVTQVQAK 275 (315)
Q Consensus 266 ~~~ie~l~~~ 275 (315)
+.+.+++.+.
T Consensus 116 ~~i~~~~~~~ 125 (135)
T d1k47a2 116 KTLKNRWADL 125 (135)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 6677776663
No 7
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.17 E-value=5.1e-06 Score=67.82 Aligned_cols=98 Identities=10% Similarity=0.147 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHH-H-hHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEec
Q psy7887 183 EEAYRVERFLSVCRSDISEEQKLQQLGTLMN-Q-SHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALS 260 (315)
Q Consensus 183 ~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~-~-SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv 260 (315)
....|+--++.++ ..+|++.+++.+. + -|+..|.... |+++.+.+. .+.|++|+-|+|+| .++++|+
T Consensus 34 ~n~~~~~~lv~al-----~~~d~~l~~~~~~~D~l~Ep~r~~l~---P~~~~ik~~-l~~ga~~~~lSGSG--PTv~al~ 102 (133)
T d1h72c2 34 NNVGKACGMVYAL-----YNKDKSLFGRYMMSDKVIEPVRGKLI---PNYFKIKEE-VKDKVYGITISGSG--PSIIAFP 102 (133)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHTTCCSSHHHHHTTS---TTHHHHHHH-HTTTEEEEEECTTS--SCEEEEE
T ss_pred HhhhhhHHHHHHH-----hccCHHHHHHHHhcCcccCceecccC---CchHHHHHH-hhcCceEEEEeCCC--CcEEEEe
Confidence 3355666667776 7889999987554 4 5899887654 999999875 56799999999998 9999999
Q ss_pred cCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCCCceEEE
Q psy7887 261 DKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIF 301 (315)
Q Consensus 261 ~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~~GA~i~ 301 (315)
+.+.++.+.+.+++.|. ..+.+..+.|++|+
T Consensus 103 ~~~~~~~~~~~l~~~~~----------~~~~~~~~~G~~Vv 133 (133)
T d1h72c2 103 KEEFIDEVENILRDYYE----------NTIRTEVGKGVEVV 133 (133)
T ss_dssp CGGGHHHHHHHHHHHCS----------CEEEECBCCCCEEC
T ss_pred ChHHHHHHHHHHHHHHh----------hCEEecCCCCcEEC
Confidence 88888888888877542 35667788888764
No 8
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=96.62 E-value=0.0012 Score=51.50 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC-cHHHHHHHHHH
Q psy7887 227 HEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQA 274 (315)
Q Consensus 227 ~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~~ 274 (315)
+|+++++.+..++.|+.+++|||.| .|++++++.. .+++..+.+++
T Consensus 62 ~p~l~~~~~~l~~~g~~~~~mSGSG--st~F~l~~~~~~a~~~~~~l~~ 108 (120)
T d1ueka2 62 FPELKEVRGRMRALGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALRA 108 (120)
T ss_dssp CTHHHHHHHHHHHTTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHhhhhheeecCCC--CeEEEEeCCHHHHHHHHHHHHH
Confidence 4899999999999999999999998 9999999753 45555555544
No 9
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=91.06 E-value=0.067 Score=41.52 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCC-cHHHHHHHHH
Q psy7887 227 HEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQ 273 (315)
Q Consensus 227 ~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~-~~~~~ie~l~ 273 (315)
+|++..+.+...+.| .+||||.| .|+.++.+.. .+..+.+.+.
T Consensus 56 ~P~I~~~~~~L~~~g--~~~MSGSG--stvF~~f~~~~~a~~~~~~l~ 99 (120)
T d1oj4a2 56 FREVDAVLSWLLEYA--PSRLTGTG--ACVFAEFDTESEARQVLEQAP 99 (120)
T ss_dssp CHHHHHHHHHHTTTS--CEEECTTS--SCEEEEESSHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHhhcc--cceecCCC--CEEEEEeCCHHHHHHHHHHcC
Confidence 388888888777666 47999998 9999999764 3344444443
No 10
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=78.26 E-value=0.32 Score=40.52 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=21.9
Q ss_pred eecCCchHHHHHHHHHHhhcCCCc
Q psy7887 22 VTTDSIPTAKKTLDIIAKKKDVDN 45 (315)
Q Consensus 22 ~~~~rVvEcrlAa~~La~~~gl~~ 45 (315)
.||+|+.||+-|+..+++++|++.
T Consensus 19 ~Yn~R~~ec~~a~~~v~~~~~~~~ 42 (183)
T d1piea2 19 KYNERFAETREALKRMQTRLDIQS 42 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred hhHHHHHHHHHHHHHHHHhcCcch
Confidence 599999999999999999999843
No 11
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=68.75 E-value=8.6 Score=28.12 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHcCCce---EEEeCCCCcc-----------eEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEe
Q psy7887 228 EALDSLVTCFREAGAYG---ARLTGAGWGG-----------CVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTT 292 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~G---aRlTGAGfGG-----------cvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t 292 (315)
..+|.+.+...+.|+-| +...|-|--| -+..+|+++.++++++++.+.|+..+.. .+|++
T Consensus 16 ~~~~~v~~~L~~~Gv~G~Tv~~v~G~G~~~~~~~~~~g~~v~Ieivv~~e~~~~vv~~I~~~~~~~~~G-----~ifv~ 89 (100)
T d2cz4a1 16 LLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFPHYAV-----IAYVE 89 (100)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTTTSCC-----EEEEE
T ss_pred HHHHHHHHHHHHCCCCceEEEeCEEEccCCCCcccCccceEEEEEEECHHHHHHHHHHHHHHhcCCCcE-----EEEEE
Confidence 46799999999988776 3455544211 5777888999999999999988765432 56665
No 12
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.74 E-value=23 Score=29.35 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh----HHHHhhcCC-C--CChHHHHHHHHH---HHc-C-
Q psy7887 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQS----HTSLATKYE-C--SHEALDSLVTCF---REA-G- 241 (315)
Q Consensus 174 l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~S----H~SLr~lye-~--S~peLD~Lv~iA---~~~-G- 241 (315)
...|+.++.. .|+.++.+|+ .++||+.||++.-.+ |.-|-+-+- + =+|.--.+++.. ++. |
T Consensus 32 ~~~r~~~~~p--~r~~~m~~AI-----~~rDF~~f~eite~ds~~mHA~~l~s~Ppi~Ylnd~S~~ii~~V~~~r~~~g~ 104 (203)
T d1fi4a2 32 FKERIEHVVP--KRFEVMRKAI-----VEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGE 104 (203)
T ss_dssp HHHHHHTHHH--HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhH--HHHHHHHHHH-----HhCCHHHHHHHHHHhHHHHHHHHhcCCCCeEEECchHHHHHHHHHHHHHhcCC
Confidence 4567666543 5677777776 789999999998764 555555321 1 124433444444 332 3
Q ss_pred CceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhh
Q psy7887 242 AYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYT 278 (315)
Q Consensus 242 a~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~ 278 (315)
...+--.-|| .-+..|+.++.++++...+...|..
T Consensus 105 ~~v~yT~DAG--PNv~ll~~~~~~~~v~~~l~~~f~~ 139 (203)
T d1fi4a2 105 TIVAYTFDAG--PNAVLYYLAENESKLFAFIYKLFGS 139 (203)
T ss_dssp CCEEEEECSS--SCEEEEEEGGGHHHHHHHHHHHHTT
T ss_pred ccEEEEECCC--CCEEEEEccccHHHHHHHHHHHCCC
Confidence 3345566777 7888888899999999999887654
No 13
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=53.89 E-value=7.1 Score=26.88 Aligned_cols=33 Identities=39% Similarity=0.425 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 64 KEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 64 ~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+.....+...+..+| |.+||++.||++++++.+
T Consensus 13 ~~a~~~L~~~lGR~P-t~~EiA~~lg~s~~e~~~ 45 (77)
T d1rp3a1 13 KEVVEKLKEKLGREP-TDEEVAKELGISTEELFK 45 (77)
T ss_dssp HHHHHHHHHHHSSCC-CHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHCcCHHHHHH
Confidence 344455555565565 799999999999999884
No 14
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=47.02 E-value=10 Score=25.52 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.8
Q ss_pred cCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 74 LHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 74 l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
...+++|.+||++.+|+|.+...+
T Consensus 24 ~~~~~~tl~eIa~~lgiS~erVrq 47 (61)
T d1ku3a_ 24 IDGREHTLEEVGAYFGVTRERIRQ 47 (61)
T ss_dssp TTSSCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHH
Confidence 356889999999999999998874
No 15
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=44.73 E-value=17 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHH
Q psy7887 225 CSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAK 275 (315)
Q Consensus 225 ~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~ 275 (315)
+|...|..++++|.+.|..-.|+|.-+ ..-+..++.++++.+++.|.+.
T Consensus 59 ~S~~~iR~iadIAdKY~~G~lrfTtR~--NIEf~~~~~e~v~~l~~eL~~~ 107 (119)
T d3c7bb2 59 LSIYTVRELCDIADKYSDGYLRWTSRN--NVEFFVTDESKIDDLINEVQER 107 (119)
T ss_dssp EEHHHHHHHHHHHHHHSTTEEEECTTS--CEEEEESCGGGHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcceEEeecCC--CceeecCCHHHHHHHHHHHHhc
Confidence 366788999999999986668999764 5555666778999999999764
No 16
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=41.37 E-value=13 Score=25.67 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHH
Q psy7887 223 YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 223 ye~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~ 274 (315)
+.+|.+.+..|.++|.+.|..-.|+|--. ...+.-++.+.++++.+.+.+
T Consensus 25 G~it~~ql~~la~ia~~yg~g~i~lTtrq--~l~l~~i~~~~~~~v~~~L~~ 74 (80)
T d1zj8a1 25 GRVSGTILTAVADLMARAGSDRIRFTPYQ--KLVILDIPDALLDDLIAGLDA 74 (80)
T ss_dssp TEEEHHHHHHHHHHHHHHTCCCEEECTTS--CEEEEEECHHHHHHHHHHHHH
T ss_pred cEECHHHHHHHHHHHHHhCCCeEEECCCC--cEEEcCCCHHHHHHHHHHHHH
Confidence 45677889999999999986556998755 888888999999999988876
No 17
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=41.36 E-value=13 Score=29.13 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHHHcCCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHH
Q psy7887 225 CSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAK 275 (315)
Q Consensus 225 ~S~peLD~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~ 275 (315)
+|...+..|+++|.+.|..-.|+|.-. ..-+..++.++++.+++.|.+.
T Consensus 72 lS~~~lR~iadIAdkYg~G~lrfTtRq--nIEf~~v~~~~v~~L~~eL~~~ 120 (134)
T d2v4jb2 72 MSITHIREMCDIADKYCGGHLRFTTRN--NVEFMVADEASLKALKEDLASR 120 (134)
T ss_dssp EEHHHHHHHHHHHHHHSTTEEEECTTS--CEEEEESSHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHCCCceeecCCC--ceeEecCCHHHHHHHHHHHHHC
Confidence 466788999999999987678999764 6666677788999999988774
No 18
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=36.20 E-value=11 Score=25.28 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCCChHHHHHHHHHHHcCCce-EEEeCCCCcceEEEeccCCcHHHHHHHHHH
Q psy7887 224 ECSHEALDSLVTCFREAGAYG-ARLTGAGWGGCVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 224 e~S~peLD~Lv~iA~~~Ga~G-aRlTGAGfGGcvvaLv~~~~~~~~ie~l~~ 274 (315)
.++.+.+..|.++|.+.|.-| .|+|--. ..-+.-++.+.++++.+.+.+
T Consensus 10 ~it~~ql~~la~ia~kyg~~g~i~~TtRQ--~iql~~v~~~~l~~v~~~L~~ 59 (65)
T d1aopa1 10 VITTKQWQAIDKFAGENTIYGSIRLTNRQ--TFQFHGILKKNVKPVHQMLHS 59 (65)
T ss_dssp EEEHHHHHHHHHHHHHHBSSCCEEECTTS--CEEECCBC-----CHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCCCceeecCcc--eEEeCCCCHHHHHHHHHHHHH
Confidence 456678899999999998656 6898755 788888999999999998876
No 19
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=35.16 E-value=15 Score=23.21 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 62 SLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 62 ~l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
.++.+++.+++++. ++.|.+++++..|++.-.|..
T Consensus 4 ~i~~v~~yI~~~~~-~~~tl~~lA~~~~~s~~~l~r 38 (54)
T d1bl0a1 4 TIHSILDWIEDNLE-SPLSLEKVSERSGYSKWHLQR 38 (54)
T ss_dssp HHHHHHHHHHTTTT-SCCCCHHHHHHSSSCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHH
Confidence 46778888999885 678999999999999998874
No 20
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=33.11 E-value=3.6 Score=33.37 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.8
Q ss_pred eecCCchHHHHHHHHHHh
Q psy7887 22 VTTDSIPTAKKTLDIIAK 39 (315)
Q Consensus 22 ~~~~rVvEcrlAa~~La~ 39 (315)
.||+|+.||.-|+.+|.+
T Consensus 19 ~Yn~R~~ec~~a~~~lg~ 36 (171)
T d1s4ea2 19 EYAERKRIAEESLRILGK 36 (171)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 699999999999988754
No 21
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.09 E-value=24 Score=22.98 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 71 DAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 71 ~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
...+..+| |.+||++.+|++.+++..
T Consensus 25 ~q~lgReP-T~~EiA~~l~~~~e~V~~ 50 (57)
T d1l0oc_ 25 SKTRGRAP-TVTEIADHLGISPEDVVL 50 (57)
T ss_dssp HHHHTSCC-BHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCCC-CHHHHHHHHCcCHHHHHH
Confidence 33344444 899999999999998863
No 22
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.28 E-value=3.2 Score=33.71 Aligned_cols=18 Identities=6% Similarity=-0.053 Sum_probs=15.3
Q ss_pred eecCCchHHHHHHHHHHh
Q psy7887 22 VTTDSIPTAKKTLDIIAK 39 (315)
Q Consensus 22 ~~~~rVvEcrlAa~~La~ 39 (315)
.||+|+.||.-||+.|.+
T Consensus 19 ~Yn~R~~ec~~aa~~lg~ 36 (176)
T d1wuua2 19 EYPVRRRQCEEVARALGK 36 (176)
T ss_dssp THHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhCc
Confidence 599999999999887643
No 23
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=28.07 E-value=16 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhcCCCc
Q psy7887 29 TAKKTLDIIAKKKDVDN 45 (315)
Q Consensus 29 EcrlAa~~La~~~gl~~ 45 (315)
|.+=||+.||+|+|+++
T Consensus 15 ~A~eAAk~la~kMGl~~ 31 (52)
T d1xrsb2 15 RSAEAAKQIALKMGLEE 31 (52)
T ss_dssp HHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 56779999999999953
No 24
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.34 E-value=18 Score=24.03 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=16.8
Q ss_pred CCCHHHHHHHhcCChhhhh
Q psy7887 78 AYTKEEVQEILEVSEEELD 96 (315)
Q Consensus 78 ~yt~~ei~~~l~~~~~~l~ 96 (315)
+.|.+||+..+|++.+-+.
T Consensus 29 ~lt~~~lA~~~G~sRetvs 47 (69)
T d1i5za1 29 KITRQEIGQIVGCSRETVG 47 (69)
T ss_dssp ECCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 5799999999999999876
No 25
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=26.90 E-value=30 Score=24.65 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHhcCChhhhhc
Q psy7887 75 HPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 75 ~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
..+|.|.+||++.+|+|.+.+.+
T Consensus 35 ~~~~~tl~eI~~~lgiSrERVRQ 57 (87)
T d1ttya_ 35 DGKPKTLEEVGQYFNVTRERIRQ 57 (87)
T ss_dssp TSSCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHH
Confidence 56889999999999999998874
No 26
>d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus [TaxId: 274]}
Probab=26.59 E-value=1.1e+02 Score=22.29 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCce---EEEeCCCCc--------c-----------eEEEeccCCcHHHHHHHHHHHhhhccCCCCCC
Q psy7887 229 ALDSLVTCFREAGAYG---ARLTGAGWG--------G-----------CVVALSDKSSCEALVTQVQAKFYTDQRTSSKP 286 (315)
Q Consensus 229 eLD~Lv~iA~~~Ga~G---aRlTGAGfG--------G-----------cvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~ 286 (315)
.++.+.+...+.|..| +.+.|-|-. | -+..+|+.+.++++++++.+.-+. +. .-+
T Consensus 12 kl~~V~~aL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~ve~vv~~I~~~a~T--G~-~GD 88 (116)
T d1vfja_ 12 KLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART--GE-VGD 88 (116)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC--SS-TTC
T ss_pred HHHHHHHHHHhCCCCcEEEEeeEecCCcccccccccceEEEeecCCceEEEEEEcHHHHHHHHHHHHHHhcc--CC-CCC
Confidence 5788888888887666 466665531 1 245568889999999999886433 32 113
Q ss_pred CeEEEeeCC
Q psy7887 287 DLIFTTKPQ 295 (315)
Q Consensus 287 ~~vf~t~p~ 295 (315)
..+|++...
T Consensus 89 GkIfV~~Ve 97 (116)
T d1vfja_ 89 GKIFVLPVE 97 (116)
T ss_dssp CEEEEEECS
T ss_pred ceEEEEEhH
Confidence 467766433
No 27
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=26.19 E-value=26 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHhcCChhhhh
Q psy7887 65 EMIDIADAILHPEAYTKEEVQEILEVSEEELD 96 (315)
Q Consensus 65 ~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~ 96 (315)
++...+.+.......|.+|+++.+|++...+.
T Consensus 6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is 37 (69)
T d2a6ca1 6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVS 37 (69)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHcCHhHHH
Confidence 45556666777788999999999999988765
No 28
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.09 E-value=20 Score=22.56 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 63 LKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 63 l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
++++++.+.+++++ +.|.+++++.+|+|...|..
T Consensus 5 i~~i~~yi~~~~~~-~itl~~lA~~~~~S~~~l~r 38 (54)
T d1d5ya1 5 IRDLLIWLEGHLDQ-PLSLDNVAAKAGYSKWHLQR 38 (54)
T ss_dssp HHHHHHHHHTTSSS-SCCCHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CCCHHHHHHHHCcCHHHHHH
Confidence 45677778888766 48999999999999998874
No 29
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=26.06 E-value=20 Score=23.54 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=27.0
Q ss_pred hhhhHHhhhcCHHHHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 52 LGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 52 L~~~q~~~~~~l~~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
..++...+|++-..+-......-.+...+...|++.||+++++|..
T Consensus 17 q~elA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~lf~ 62 (66)
T d1utxa_ 17 QSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQ 62 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEE
T ss_pred HHHHHHhcccCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHcC
Confidence 4455555555544443333333333334566788999999999864
No 30
>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}
Probab=24.84 E-value=20 Score=24.84 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=39.2
Q ss_pred HHhhhhhhhhccccCCchhhhhhhcc-hhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHH
Q psy7887 120 EILEVSEEELDSDILTPNTRSVASFK-VQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYE 183 (315)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~a~~~g-v~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~ 183 (315)
..+++-.+.|+-|..-+.--|..+|. ++.+..++.++|... ..+...+. ..|+.||+-++.
T Consensus 3 a~~~~F~~~LdVDe~lA~lLv~EGF~siEeIAyv~~~eL~~I--egfDee~a-~eL~~RA~~~L~ 64 (68)
T d1u9la_ 3 AAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEI--EGLDEPTV-EALRERAKNALA 64 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTS--TTCCHHHH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCcHHHHHHHHHhccCcHHHHhcCCHHHHHHh--cccCHHHH-HHHHHHHHHHHH
Confidence 34455556666666555556667775 888999999999762 22322332 258899987654
No 31
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=22.92 E-value=27 Score=23.66 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHhcCChhhhh
Q psy7887 77 EAYTKEEVQEILEVSEEELD 96 (315)
Q Consensus 77 ~~yt~~ei~~~l~~~~~~l~ 96 (315)
-+.|.+||+..+|++.+.+.
T Consensus 29 ~~lt~~elA~~~g~sretvs 48 (80)
T d3e5ua1 29 MPLSQKSIGEITGVHHVTVS 48 (80)
T ss_dssp SCCCHHHHHHHHTCCHHHHH
T ss_pred eCCCHHHHHHHHCCCHHHHH
Confidence 46899999999999999776
No 32
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=21.96 E-value=37 Score=23.07 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHhcCChhhhhc
Q psy7887 76 PEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 76 ~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
.++.|.+||++.+|+|-+...+
T Consensus 23 ~~~~tl~eI~~~lgiSrerVrq 44 (68)
T d2p7vb1 23 NTDYTLEEVGKQFDVTRERIRQ 44 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHH
T ss_pred CCcCCHHHHHHHHCCCHHHHHH
Confidence 4678999999999999998874
No 33
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=21.47 E-value=45 Score=21.55 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHhcCChhhhhc
Q psy7887 77 EAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 77 ~~yt~~ei~~~l~~~~~~l~~ 97 (315)
+.+|.+||++.+|+|...+..
T Consensus 36 ~~~s~~eIA~~lgis~~tv~~ 56 (71)
T d1rp3a2 36 EELPAKEVAKILETSVSRVSQ 56 (71)
T ss_dssp SCCCHHHHHHHTTSCHHHHHH
T ss_pred HhCCHHHHHHHHCCCHHHHHH
Confidence 568999999999999998875
No 34
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=21.42 E-value=53 Score=23.75 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcCCceE-EEeC-CCCcc------------------eEEEeccCCcHHHHHHHHHH
Q psy7887 228 EALDSLVTCFREAGAYGA-RLTG-AGWGG------------------CVVALSDKSSCEALVTQVQA 274 (315)
Q Consensus 228 peLD~Lv~iA~~~Ga~Ga-RlTG-AGfGG------------------cvvaLv~~~~~~~~ie~l~~ 274 (315)
|-.+.|++.|++.|.-|| -+.| +|||+ ++..+-.+++++.|++.+++
T Consensus 20 pl~~~iv~~ar~~giaGaTv~rgi~GfG~~~~~h~~~~~~ls~dlPv~Ie~vd~~eki~~~l~~l~~ 86 (102)
T d1o51a_ 20 PLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDN 86 (102)
T ss_dssp EHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHT
T ss_pred EHHHHHHHHHHHCCCCcEEEEeeeeeeCCCCcEeccchhhhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 567899999999987775 3333 46665 23333344667777777754
No 35
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=20.70 E-value=61 Score=23.26 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHhcCChhhhhc
Q psy7887 65 EMIDIADAILHPEAYTKEEVQEILEVSEEELDS 97 (315)
Q Consensus 65 ~~~~~~~~~l~~~~yt~~ei~~~l~~~~~~l~~ 97 (315)
|.-..+...+. ..+|.+||++.+|.+..-+..
T Consensus 18 e~A~a~~~l~~-~g~s~~eiA~~~G~s~~~V~~ 49 (114)
T d1r71a_ 18 EIADFIGRELA-KGKKKGDIAKEIGKSPAFITQ 49 (114)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHCCcHHHHHH
Confidence 33344444443 478999999999999988763
No 36
>d1mg7a2 d.58.26.6 (A:188-380) Early switch protein XOL-1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=20.39 E-value=90 Score=25.11 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=51.8
Q ss_pred HHHHHHH-hHHHHhh-cCCCCChHHHHHHHHHHHc------CCceEEEeCCCCcceEEEeccCCc-HHHHHHHHHHHhhh
Q psy7887 208 LGTLMNQ-SHTSLAT-KYECSHEALDSLVTCFREA------GAYGARLTGAGWGGCVVALSDKSS-CEALVTQVQAKFYT 278 (315)
Q Consensus 208 LG~LM~~-SH~SLr~-lye~S~peLD~Lv~iA~~~------Ga~GaRlTGAGfGGcvvaLv~~~~-~~~~ie~l~~~Y~~ 278 (315)
+..+|.. |-.-.+. .|.| .+..+.+..+.+. ...|--+-- ||.+|+|-+..- .++.++.+...-..
T Consensus 72 vp~~M~~~SerRv~se~~~~--~~~eqd~h~gLe~v~n~~e~l~GFEIQQ---GGiLvvLKK~~F~~deLik~iS~sIa~ 146 (193)
T d1mg7a2 72 VPAYMTAHSKNRVRQEDYTC--LEVEFDSQVALEKLMNEHEQVEGFEVQQ---GGILVALKKDSFFDDELIEKIAIAIAT 146 (193)
T ss_dssp HHHHHHHHHHHHHHCSSCCC--CHHHHHHHHHHHHHHHHCTTEEEEEECS---SCEEEEEETTGGGCHHHHHHHHHHHHH
T ss_pred chhhheeeccceeecccCCc--chHHHHHHHHHHHHHhhhhhccceEEec---CcEEEEEecCchhhhHHHHHHHHHHHH
Confidence 4444443 4443332 3433 3666666666552 333444433 578888876542 24466666555433
Q ss_pred ccCCCCCCC-eEEEeeCCCceEEEee----cCCCCeEEe
Q psy7887 279 DQRTSSKPD-LIFTTKPQTGAIIFQC----DEEGGCQIV 312 (315)
Q Consensus 279 ~~~~~~~~~-~vf~t~p~~GA~i~~~----~~~g~~~~~ 312 (315)
.-..+ ... .+-..+||.||.++++ +=+--|++|
T Consensus 147 ~sr~s-vtqIsFnLLqpgrGA~l~~~~~~R~~dP~~~~~ 184 (193)
T d1mg7a2 147 ESRQS-VSSVSFDLLKLGPGASLVTLANSRRFEPECRVV 184 (193)
T ss_dssp HCSSC-CCEEEEEEECBCBCCEECCTTTGGGSCCEEEEE
T ss_pred hhcCC-eeEEEEeeeccCCCceeeecccccccCCcceEE
Confidence 32221 112 2346779999998764 334456665
Done!