RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7887
(315 letters)
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 153 bits (389), Expect = 6e-43
Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 11/166 (6%)
Query: 147 QEILEVSEEELDSDIL-TPNTRSVAS----FKVKQRALHVYEEAYRVERFLSVCRSDISE 201
+EI E+ E L S +P + +V FK+ QRA+HVY EA RV F S +SE
Sbjct: 329 EEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSE 388
Query: 202 EQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSD 261
E+KL++LG LMN+SH S + YECS L+ LV R+ GA GARLTGAGWGGC VAL
Sbjct: 389 EEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVK 448
Query: 262 KSSCEALVTQVQAKFYTDQRTS---SKPDL---IFTTKPQTGAIIF 301
++ + ++ KFY + + DL +F +KP +GA I
Sbjct: 449 EAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAIL 494
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 93.9 bits (234), Expect = 1e-21
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 151 EVSEEELD--SDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQL 208
+V++EE + + K+ +RA HV E RV RS L +
Sbjct: 250 DVTDEEFAALQAEIEVDP------KIARRARHVVTENQRVLEAAKALRSG-----DLTEF 298
Query: 209 GTLMNQSHTSLATKYECSHEALDSLV-TCFREAGAYGARLTGAGWGGCVVALSDKSSCEA 267
G LMN+SH SL YE + LD+LV GAYGAR+TGAG+GGCV+AL EA
Sbjct: 299 GELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEA 358
Query: 268 LVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298
+ V ++ + + + + GA
Sbjct: 359 VAEAVAEEYE---KVTGLKAAFYVVEASQGA 386
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 85.4 bits (212), Expect = 6e-19
Identities = 55/156 (35%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 143 SFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEE 202
S K EV+EE+L L P R +RA +V E RV + D +E
Sbjct: 215 SSK-----EVTEEDLSK--LPPLLR--------KRAGYVLRENERVLKVR-----DALKE 254
Query: 203 QKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK 262
++ LG L+ +SH LA YE S E LD V E GAYGARLTGAG+GG +AL DK
Sbjct: 255 GDIETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDK 314
Query: 263 SSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298
E++ ++ ++ R P F + G
Sbjct: 315 GKFESIGEELLEEYKK--RFGIDPKY-FVVESSDGV 347
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 77.6 bits (191), Expect = 5e-16
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 233
V++RA HV E RV + + ++ +Q G LMN+SH S YEC+ +D L
Sbjct: 266 VEERAKHVVSENLRVLKAVKAM-----KDNDFKQFGALMNESHASCDDDYECTCPEIDEL 320
Query: 234 VTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTT 292
V G+ G+R+TGAG+GGC V L + + V Q A Y + + +
Sbjct: 321 VCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDK-VRQAVADKYPKKTGLELTFYVIVS 379
Query: 293 KPQTGAI 299
KP G+
Sbjct: 380 KPGAGSC 386
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 74.9 bits (185), Expect = 3e-15
Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 151 EVSEEELD--SDILTPNTRSVASFKVKQRALHVYEEAYRVER---FLSVCRSDISEEQKL 205
E++EEE D S ++ T K RA H E R + L + L
Sbjct: 249 ELTEEEFDEYSYLIKDETL----LK---RARHAVTENQRTLKAVKAL--------KAGDL 293
Query: 206 QQLGTLMNQSHTSLATKYECSHEALDSLV-TCFREAGAYGARLTGAGWGGCVVALSDKSS 264
++ G LMN SH SL YE + LD+LV +++ G GAR+TGAG+GGC +A+ K
Sbjct: 294 EKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDK 353
Query: 265 CEALVTQVQAKFYTD 279
EA V K Y +
Sbjct: 354 VEAFKENV-GKAYEE 367
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 67.2 bits (164), Expect = 1e-12
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 139 RSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCR-S 197
R+ A V + V + L + L + + +RA HV E RV F + S
Sbjct: 214 RAAADLGVSSLRAVQDRGLAA--LGAIADPIDA----RRARHVLTENQRVLDFAAALADS 267
Query: 198 DISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVV 257
D + G L+ SH S+ +E + E +D + AGA GAR+TG G+GGCV+
Sbjct: 268 DFTA------AGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVI 321
Query: 258 ALSDKSSCEALVTQV 272
AL E + V
Sbjct: 322 ALVPADRAEDVADTV 336
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 64.4 bits (157), Expect = 1e-11
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 176 QRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 235
+RA H + E RV + + S L++ G L++ S S YEC E L L
Sbjct: 298 RRAEHYFSENMRVIKGVEAWASG-----NLEEFGKLISASGLSSIENYECGCEPLIQLYE 352
Query: 236 CFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKP 294
+A G YGAR +GAG+ GC VA D E + V+ ++ Q P+L
Sbjct: 353 ILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQ-----PELASNING 407
Query: 295 QTGAIIFQCDEEGGCQIV 312
+I C+ +++
Sbjct: 408 DKPVLI--CEAGDCARVL 423
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 61.1 bits (149), Expect = 7e-11
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 197 SDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCV 256
E+ ++ LG LMN + L SH LD LV R+AGA GA+LTGAG GGC+
Sbjct: 213 KAALEDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVEIARKAGALGAKLTGAGGGGCM 271
Query: 257 VAL 259
+AL
Sbjct: 272 IAL 274
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 60.5 bits (147), Expect = 2e-10
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 192 LSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 251
+S ++ LG LMN + L S + L L+ R AGA GA++TGAG
Sbjct: 200 ISEKGEELILSGDYVSLGELMNINQ-GLLDALGVSTKELSELIYAARTAGALGAKITGAG 258
Query: 252 WGGCVVALSDKSSCEALVTQV 272
GGC+VAL+ + T +
Sbjct: 259 GGGCMVALAAPEKQSEVATAI 279
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 56.0 bits (135), Expect = 2e-10
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 201 EEQKLQQLGTLMNQSHTSLATK--YECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVA 258
E L+ LG L+N++ SL LD L+ RE GA GA+L+G+G G V A
Sbjct: 6 REGDLELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGGPTVFA 65
Query: 259 L-SDKSSCEALVTQVQAKFY 277
L D+ E + ++ +
Sbjct: 66 LFKDEEDAEEVAEALREAYP 85
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 60.3 bits (147), Expect = 3e-10
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 233
V +RA HV E R + + L+++G LM +SH S+ +E + +D+L
Sbjct: 261 VAKRARHVITENART-----LEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTL 315
Query: 234 VTCFREA----GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLI 289
V + G G R+TG G+GGC+VAL + EA+ V ++ +T K
Sbjct: 316 VEIVKAVIGDQG--GVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE--AKTGLKET-F 370
Query: 290 FTTKPQTGA 298
+ K GA
Sbjct: 371 YVCKASQGA 379
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 58.1 bits (141), Expect = 1e-09
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALS 260
+ ++LG LMN + L S LD LV R GA GA+LTGAG GGC++AL+
Sbjct: 221 QTGDFEELGELMNINQ-GLLKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALA 279
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 57.2 bits (138), Expect = 3e-09
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 205 LQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL-SDKS 263
L ++G LMN +H L K S LDS+V R GA GA+++G G GG VVAL + +
Sbjct: 239 LFRVGELMNANHD-LCQKLTVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASED 297
Query: 264 SCEALVTQVQAK 275
+A+ V+A+
Sbjct: 298 QRDAIAKAVRAR 309
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 52.9 bits (127), Expect = 8e-08
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 176 QRALHVYEEAYRVERFLSVCRSD--ISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 233
+R + E R F+ + + +S E++ ++ G ++N H + + + LD +
Sbjct: 331 ERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFI 390
Query: 234 -VTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKF 276
E G G R+ G G+GGC++ L K++ + +V V+ KF
Sbjct: 391 HELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 38.1 bits (89), Expect = 0.004
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 25/126 (19%)
Query: 155 EELDSDIL---TPNTRSVASFKVKQRALHVYEEAYRVERFLSVC-----------RSDIS 200
EL++ +L T TR + Q V + +E + R+DI
Sbjct: 184 AELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDALVRNDIP 243
Query: 201 EEQKLQQLGTLMN---QSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVV 257
E G +++ ++ L+++ S++A+D + + GAYG +L+GAG GG ++
Sbjct: 244 E------FGQILDRGWEAKKKLSSR--ISNDAIDRIYELALKNGAYGGKLSGAGGGGFLL 295
Query: 258 ALSDKS 263
D S
Sbjct: 296 FFCDPS 301
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 34.1 bits (78), Expect = 0.11
Identities = 18/135 (13%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 77 EAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTP 136
+ T +++ + E ++ + D L K+ Q Q+I + EE L+ + +
Sbjct: 388 QIITTKKINIVEESNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKK--EELLEKEFVKK 445
Query: 137 NTRSVASFKVQEILEVSEEEL---DSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLS 193
+ + + ++ + LE+++++ D ++ + FK ++ A + + + + +
Sbjct: 446 SEKIPKNDELLDNLELAKQKFFNKDIELSKNMLQKFNKFKNEESAENSFIDIIKQADLVL 505
Query: 194 VCRSDI---SEEQKL 205
+ E
Sbjct: 506 WVSPNALILGVEDLG 520
>gnl|CDD|187653 cd08950, KR_fFAS_SDR_c_like, ketoacyl reductase (KR) domain of
fungal-type fatty acid synthase (fFAS), classical
(c)-like SDRs. KR domain of fungal-type fatty acid
synthase (FAS), type I. Fungal-type FAS is a
heterododecameric FAS composed of alpha and beta
multifunctional polypeptide chains. The KR, an SDR
family member, is located centrally in the alpha chain.
KR catalyzes the NADP-dependent reduction of
ketoacyl-ACP to hydroxyacyl-ACP. KR shares the critical
active site Tyr of the Classical SDR and has partial
identity of the active site tetrad, but the upstream Asn
is replaced in KR by Met. As in other SDRs, there is a
glycine rich NAD-binding motif, but the pattern found in
KR does not match the classical SDRs, and is not
strictly conserved within this group. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human prostaglandin
dehydrogenase (PGDH) numbering). In addition to the Tyr
and Lys, there is often an upstream Ser (Ser-138, PGDH
numbering) and/or an Asn (Asn-107, PGDH numbering)
contributing to the active site; while substrate binding
is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type KRs have
a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 259
Score = 30.6 bits (70), Expect = 0.84
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVA--LSDKSSCEALVTQVQAKFYTDQRTS 283
SHE +R+ GA G++L VV + K EALV + Y +Q
Sbjct: 43 SHERTAFFQKLYRKHGAKGSKLW-------VVPFNQASKQDVEALVEYI----YDEQTKL 91
Query: 284 SK-PDLI--FTTKPQTGAII 300
+ D + F + G +I
Sbjct: 92 AWDLDFLFPFAAISENGRLI 111
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 30.6 bits (69), Expect = 0.97
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 196 RSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAY--GARLTGAGWG 253
S +E+KL++L MNQ L SH S+ T R Y ++LTGAG G
Sbjct: 287 LSITEKEEKLKEL-MEMNQG---LLQCMGVSHS---SIETVLRTTLKYKLVSKLTGAGGG 339
Query: 254 GCVVAL 259
GCV+ L
Sbjct: 340 GCVLTL 345
>gnl|CDD|185288 PRK15390, PRK15390, fumarate hydratase FumA; Provisional.
Length = 548
Score = 30.4 bits (68), Expect = 1.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 114 QPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEEL 157
+P Q + +++ + +LT SV+ F+ QEIL+V+ E L
Sbjct: 4 KPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAPEAL 47
>gnl|CDD|224074 COG1152, CdhA, CO dehydrogenase/acetyl-CoA synthase alpha subunit
[Energy production and conversion].
Length = 772
Score = 29.8 bits (67), Expect = 2.4
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 84 VQEILEVSEEEL------DSDILTPNTRSVASFKVKQPLFVQEILEVSEEEL 129
V ++E E+L + ++ P +V K K ++ LE +EE+L
Sbjct: 118 VDHLIETFGEDLPIDLGSEVNVEAPIIETVTGIKPKTLGDLEAALEYAEEQL 169
Score = 28.6 bits (64), Expect = 5.0
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 118 VQEILEVSEEEL------DSDILTPNTRSVASFK------VQEILEVSEEELD---SDIL 162
V ++E E+L + ++ P +V K ++ LE +EE+L S +
Sbjct: 118 VDHLIETFGEDLPIDLGSEVNVEAPIIETVTGIKPKTLGDLEAALEYAEEQLTQLLSAVH 177
Query: 163 TPNTRSVASFKVKQRALHV 181
T S+ ++ K ALH
Sbjct: 178 TGQEGSLLDYESK--ALHA 194
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 29.4 bits (66), Expect = 2.7
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 211 LMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVA--LSDKSSCEAL 268
L+ T +AT S E + + + YGA L W VV + S +AL
Sbjct: 417 LLAGGATVIATTSRLSEERTEFYRSLYARHARYGAAL----W---VVPANMGSYSDVDAL 469
Query: 269 VTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIF 301
+ + +Q + P I T ++F
Sbjct: 470 IEWI----GDEQTETVGPQSIHIKLAWTPTLLF 498
>gnl|CDD|234924 PRK01229, PRK01229, N-glycosylase/DNA lyase; Provisional.
Length = 208
Score = 28.7 bits (65), Expect = 2.8
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 117 FVQEILEVSEEELDSD----ILTPNTRSVASFKVQEILE-----VSEEELDSDILT---- 163
F + EE+L S+ ILT N+ + K Q+ + +SEEEL + L
Sbjct: 25 FKLLGEKGDEEDLFSELSFCILTANSSAEGGIKAQKEIGDGFLYLSEEEL-EEKLKEVGH 83
Query: 164 --PNTRSVASFKVKQRALH 180
N R A + V+ R L+
Sbjct: 84 RFYNKR--AEYIVEARKLY 100
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 29.3 bits (66), Expect = 3.1
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 249 GAGWGGCVVA--LSDK 262
G+G G V+A LSD
Sbjct: 14 GSGSAGSVLAARLSDA 29
>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 380
Score = 28.8 bits (65), Expect = 3.8
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 50 LYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELD 96
L+LG L + + +EM++IA+ + E TK+ ++L++ ++ELD
Sbjct: 273 LWLGPLHDEEFI--EEMLEIAEGL---ELGTKKRALKLLKLIKKELD 314
>gnl|CDD|168292 PRK05906, PRK05906, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 454
Score = 28.6 bits (64), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 58 KLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELD 96
KLA + E+I IA + PE + EEV S++EL+
Sbjct: 97 KLAGHIDELIAIATSEDAPEGFFPEEV-----SSQQELE 130
>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA
methyltransferase; Provisional.
Length = 382
Score = 28.7 bits (65), Expect = 4.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 50 LYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILT 101
L+LG L K V +EM++ A E T ++ ++L+ EEE D T
Sbjct: 277 LWLGPLHDKEFV--EEMLEEAAK----ELGTSKKALKLLKTIEEESKLDTPT 322
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 28.2 bits (64), Expect = 5.0
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 239 EAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKF 276
EAGA GA ++GA G V AL DK E + +Q F
Sbjct: 245 EAGALGAGISGA--GPTVFALCDKEDAEKVADALQKAF 280
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and
plants are enzymes with high specificity for fructose,
as are all FRKs, but they catalyzes the conversion of
fructose to fructose-6-phosphate, which is an entry
point into glycolysis via conversion into
glucose-6-phosphate. This is in contrast to FRKs [or
ketohexokinases (KHKs)] from mammalia and halophilic
archaebacteria, which phosphorylate fructose to
fructose-1-phosphate.
Length = 295
Score = 28.4 bits (64), Expect = 5.5
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 28/87 (32%)
Query: 16 GSASLLVTTDSIPTAKKTLDII--AKKKDVD-----NWKDILYLGELQTKLAVSLKEMID 68
GS +L P+ L+++ AKK V N + L+ E + + + E+++
Sbjct: 127 GSIALASE----PSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERI--AELLE 180
Query: 69 IADAILHPEAYTKEEVQEILEVSEEEL 95
+AD I+++S+EEL
Sbjct: 181 LAD---------------IVKLSDEEL 192
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1. Histone
deacetylases 6 are class IIb Zn-dependent enzymes that
catalyze hydrolysis of N(6)-acetyl-lysine of a histone
to yield a deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
HDACs usually act via association with DNA binding
proteins to target specific chromatin regions. HDAC6 is
the only histone deacetylase with internal duplication
of two catalytic domains which appear to function
independently of each other, and also has a C-terminal
ubiquitin-binding domain. It is located in the cytoplasm
and associates with microtubule motor complex,
functioning as the tubulin deacetylase and regulating
microtubule-dependent cell motility. Known interaction
partners of HDAC6 are alpha tubulin (substrate) and
ubiquitin-like modifier FAT10 (also known as Ubiquitin D
or UBD).
Length = 337
Score = 28.3 bits (63), Expect = 5.7
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 89 EVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQE 148
E SEEEL +L + VA K Q + +E L + DS L PN+ S A V
Sbjct: 37 EASEEEL---LLVHSPEYVALMKSTQYMTEEE-LRTLADTYDSVYLHPNSYSCACLAVGS 92
Query: 149 ILEVSEEELDSDI 161
+L++ ++ L +I
Sbjct: 93 VLQLVDKVLGGEI 105
>gnl|CDD|131997 TIGR02952, Sig70_famx2, RNA polymerase sigma-70 factor, TIGR02952
family. This group of sigma factors are members of the
sigma-70 family (TIGR02937). They and appear by
homology, tree building, bidirectional best hits and
one-to-a-genome distribution, to represent a conserved
family. This family is found in a limited number of
Gram-positive bacterial lineages.
Length = 170
Score = 27.5 bits (61), Expect = 7.0
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 51 YLGELQTKLAVSLKEMIDIADAILHPEAYTKEEV--QEILEVSEEELDSDILTPNTRSVA 108
Y + SL ++ +PE +E +++L+ + ILTP + V
Sbjct: 78 YFRGSKRHPLFSLDVFKELLSNEPNPEEAILKEEANEKLLKALK------ILTPKQQHVI 131
Query: 109 SFKVKQPLFVQEILEV 124
+ + Q L + E+ +
Sbjct: 132 ALRFGQNLPIAEVARI 147
>gnl|CDD|129401 TIGR00300, TIGR00300, TIGR00300 family protein. All members of the
family come from genome projects. A partial length
search brings in two plant lysine-ketoglutarate
reductase/saccharopine dehydrogenase bifunctional
enzymes hitting the N-terminal region of the family
[Hypothetical proteins, Conserved].
Length = 407
Score = 27.9 bits (62), Expect = 7.0
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 37 IAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELD 96
I K+K+ ++ IL L L E+ID+ + EI EV E
Sbjct: 39 IGKRKNDPSYARILVSARDHQHLEEILTELIDLG-----------AVIPEIEEVELETAP 87
Query: 97 SDILTPNTRSVASFKVKQPLFVQ---EILEVSEEELDSDI-LTPNTRSVASFKVQEI 149
D + P+ V + P FV+ E +EV + +D+ I +TPN ++EI
Sbjct: 88 QDGVLPDDFYVTT---NHPTFVRVGGEWVEVEGQRMDAAIVVTPNPPRARCKPIREI 141
>gnl|CDD|171704 PRK12751, cpxP, periplasmic stress adaptor protein CpxP; Reviewed.
Length = 162
Score = 27.4 bits (60), Expect = 7.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 202 EQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTC--FREAG 241
EQ+ QQ+ LM QSH S EA+ L+T F EA
Sbjct: 59 EQQRQQMRDLMRQSHQSQPRLDLEDREAMHKLITADKFDEAA 100
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 27.6 bits (62), Expect = 8.3
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 238 REAGAYGARLTGAGWGGCVVALSDKSSCE---ALVTQVQAKF 276
EAGA GA L+GAG V AL+D+S E AL+ ++ +
Sbjct: 240 LEAGALGATLSGAGPT--VFALADESDAEKAAALLEELYEQG 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,308,959
Number of extensions: 1456013
Number of successful extensions: 1257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 53
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.4 bits)