RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7887
(315 letters)
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 154 bits (391), Expect = 1e-43
Identities = 75/206 (36%), Positives = 109/206 (52%), Gaps = 11/206 (5%)
Query: 98 DILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEEL 157
+ + + K + ++E+L V+E+ L + P ++ L +S EEL
Sbjct: 279 SLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPE-------EICRCLGISLEEL 331
Query: 158 DSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHT 217
+ IL+PNT+ V FK+ QRA HVY EA RV +F +C + E +Q LG LMNQSH
Sbjct: 332 RTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHM 389
Query: 218 SLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFY 277
S YECS LD LV R+ GA G+RLTGAGWGGC V++ + + V +Y
Sbjct: 390 SCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYY 449
Query: 278 --TDQRTSSKPDLIFTTKPQTGAIIF 301
+D + + +F TKP GA++
Sbjct: 450 QRSDGSLAPEKQSLFATKPGGGALVL 475
Score = 58.4 bits (141), Expect = 9e-10
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 34 LDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEE 93
++AK K + W +L L E+Q KL +SL+EM+ + + LHPE Y EE+ L +S E
Sbjct: 271 AKLLAKYKSLQ-WDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLE 329
Query: 94 ELDSDILTPNTRSVASFKVKQPLF--------VQEILEVSEEELDSDILTPNTRSVASFK 145
EL + IL+PNT+ V FK+ Q V + ++ EE ++ + S
Sbjct: 330 ELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHM 389
Query: 146 -VQEILEVSEEELD 158
+++ E S ELD
Sbjct: 390 SCRDMYECSCPELD 403
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 136 bits (342), Expect = 2e-36
Identities = 53/166 (31%), Positives = 74/166 (44%), Gaps = 9/166 (5%)
Query: 146 VQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRS--DISEEQ 203
L S EE D LT K+ QRA HVY E+ RV + L + S ++E
Sbjct: 354 ASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDED 413
Query: 204 KLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKS 263
G LMN+S S YECS + + + G++G+RLTGAGWGGC + L
Sbjct: 414 FFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSG 473
Query: 264 SC---EALVTQVQAKFYT----DQRTSSKPDLIFTTKPQTGAIIFQ 302
+ E + + KFY D D I +KP G +++
Sbjct: 474 ANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE 519
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 122 bits (308), Expect = 2e-32
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 139 RSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSD 198
S+ EV E EL L P R + ++ E RV +
Sbjct: 207 ESLKILGKGSSKEVREGELS--KLPPLHR--------KFFGYIVRENARVLEVRDALKEG 256
Query: 199 ISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVA 258
++++G ++ +H LA YE S + LD V + GAYGARLTGAG+GG +A
Sbjct: 257 -----NVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIA 311
Query: 259 LSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298
L DK E + ++ ++ +R K F +P G
Sbjct: 312 LVDKEDAETIGEEILREYL--KRFPWKAR-HFIVEPSDGV 348
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 118 bits (297), Expect = 2e-30
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 142 ASFKVQEILEVSEEELDS--DILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDI 199
+Q + E+S EE D+ D++ T + +RA H E R + +
Sbjct: 269 TRLDIQSLGELSNEEFDANTDLIGDET-------LIKRARHAVYENNRTKIAQKAFVAG- 320
Query: 200 SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREA-GAYGARLTGAGWGGCVVA 258
L + G L+N SH SL YE + LD+L ++ G GAR+TGAG+GGC +A
Sbjct: 321 ----NLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIA 376
Query: 259 LSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298
L + A V + + + + +G+
Sbjct: 377 LVAHDNVSAFRKAVGQVYE--EVVGYPAS-FYVAQIGSGS 413
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 115 bits (291), Expect = 8e-30
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 19/159 (11%)
Query: 141 VASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDIS 200
+ + + EV EEL++ R + S + +RA HV E R + + R
Sbjct: 254 ARALGKESLREVQLEELEA------ARDLVSKEGFRRARHVVGEIRRTAQAAAALRRG-- 305
Query: 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREA-GAYGARLTGAGWGGCVVAL 259
+ G LM +SH SL YE S LD LV G YG+R+TG G+GGC V L
Sbjct: 306 ---DYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTL 362
Query: 260 SDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298
+ S+ + +Q + + ++ GA
Sbjct: 363 LEASAAPHAMRHIQEHYGG------TAT-FYLSQAADGA 394
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 94.8 bits (236), Expect = 1e-22
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 173 KVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDS 232
K LH E ++ + LG +++Q+H L + S DS
Sbjct: 187 KDALPFLHALGE--LTQQAEIAISQK-----DAEGLGQILSQAHLHLK-EIGVSSLEADS 238
Query: 233 LVTCFREAGAYGARLTGAGWGGCVVAL-SDKSSCEALVTQVQAKFYT 278
LV GA GA+++G G GGC++AL ++ + + L +++ K
Sbjct: 239 LVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGAV 285
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 92.9 bits (231), Expect = 9e-22
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 176 QRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 235
H+ +A L ++ LQ+LG LMN +H + + S L+S+V
Sbjct: 224 DNYTHIVSQAREA---L--------QKGDLQRLGQLMNANHDLCR-QIDVSCRELESIVQ 271
Query: 236 CFREAGAYGARLTGAGWGGCVVALSDKS-SCEALVTQVQAKFYTDQRTSSKPDLIFTTKP 294
R GA GA+L+G G GG VAL+ S +A+V ++AK + +T +P
Sbjct: 272 TCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCP--EAKFIWR---YTVQP 326
Query: 295 QTGA 298
+
Sbjct: 327 SAAS 330
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 92.0 bits (229), Expect = 1e-21
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 169 VASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHE 228
V + +++E +V + + + + G LM ++H L K S
Sbjct: 209 VNEVAKIENKDEIFKEIDKVID-------EALKIKNKEDFGKLMTKNHELLK-KLNISTP 260
Query: 229 ALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFY 277
LD +V G +GA+LTGAG GGCV+ L ++ + L+ ++ +
Sbjct: 261 KLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDV 308
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 91.7 bits (228), Expect = 1e-21
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 175 KQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLV 234
Q HV V R D+ E K + L + N+ H L SH+ ++ L+
Sbjct: 201 PQYMSHVKHIGKLVLRAS-----DVIEHHKFEALADIFNECHADLK-ALTVSHDKIEQLM 254
Query: 235 TCFREAGAYGARLTGAGWGGCVVAL-SDKSSCEALVTQVQAKFYTD 279
+E GA +LTGAG GG ++ L D + + +V V+
Sbjct: 255 KIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGAAH 300
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 74.9 bits (184), Expect = 2e-15
Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 173 KVKQRALH-VYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSL-ATKYECSHEAL 230
+ A+H + + A + L + + + ++ + + ++ +
Sbjct: 226 QTAIEAMHKIKQSAIDTKLAL--------LKGDVGEFARILGEGWENKKKMAGAITNPMI 277
Query: 231 DSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAK 275
AGA +++GAG GG ++ + + + E +V +
Sbjct: 278 QEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNL 322
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 68.7 bits (167), Expect = 3e-13
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 180 HVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFRE 239
+ E RV + ++ L LM+ + L H +LD L
Sbjct: 270 AISLECERVLG----EMAAAPVPEQYLVLEELMDMNQHHLN-ALGVGHASLDQLCQVTAA 324
Query: 240 AGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKF 276
G ++LTGAG GGC + L A V +
Sbjct: 325 HG-LHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 360
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 58.9 bits (142), Expect = 5e-10
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 201 EEQKLQQLGTLMNQSHTSL-----ATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGC 255
+ + L + + ++ L L L G + +G+G G C
Sbjct: 263 HTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGG-AGKSSGSGGGDC 321
Query: 256 VVALS-DKSSCEALVTQVQAK 275
+A S K E LV + +
Sbjct: 322 GIAFSKTKELAEKLVNEWEKL 342
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 1e-09
Identities = 47/361 (13%), Positives = 101/361 (27%), Gaps = 112/361 (31%)
Query: 4 NMSISSPF-HSCSGSASLLVTT------DSIP----------------TAKKTLDIIAKK 40
N + F SC +L+TT D + T + ++ K
Sbjct: 255 NAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 41 KDVDNWKDILYLGEL--QTK----LAVSL-----KEMIDIADAILHPEAYTKEEVQEILE 89
D +L + +S+ ++ + D H +++ I+E
Sbjct: 311 LDCR-------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLTTIIE 360
Query: 90 VSEEELDSDILTPNTRSVASFK--VKQPLFVQEIL--EVSEEELDSDILTPNTRSVASFK 145
S L+ ++ F P + ++ +V + ++ + + S+ K
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EK 419
Query: 146 VQEILEVSEEELDSDILTPNTRSVASFKVKQRALH---VYEEAYRVERFLSVCRSDISEE 202
+ +S + ++ + ALH V + Y + + + D+
Sbjct: 420 QPKESTISIPSIYLELKVKLE--------NEYALHRSIV--DHYNIPK--TFDSDDLIPP 467
Query: 203 QK----LQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAY------GARL--TGA 250
+G H E +T FR + ++
Sbjct: 468 YLDQYFYSHIG-----HHLKNIEHPE--------RMTLFRM--VFLDFRFLEQKIRHDST 512
Query: 251 GWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKP-------DLI-FTTKPQTGAIIFQ 302
W S + Q+ KFY + P ++ F K + I +
Sbjct: 513 AWNAS-------GSILNTLQQL--KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 303 C 303
Sbjct: 564 Y 564
Score = 54.9 bits (131), Expect = 2e-08
Identities = 47/309 (15%), Positives = 96/309 (31%), Gaps = 99/309 (32%)
Query: 46 WKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTR 105
+KDIL + E K++ D+ +IL +KEE+ I+ + + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSIL-----SKEEIDHIIMSKDAVSGTLRL----- 67
Query: 106 SVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVAS-FKVQEILEVSEEELDSDILTP 164
+ KQ VQ+ +E ++L N + + S K ++ + +
Sbjct: 68 -FWTLLSKQEEMVQKFVE--------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 165 NTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSH-------- 216
F +V R++ +L + Q L +L +
Sbjct: 119 LYNDNQVF----AKYNV----SRLQPYLKL-------RQALLEL-----RPAKNVLIDGV 158
Query: 217 -----TSLATKYECSHEAL-DSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVT 270
T +A + V C + + W + L + +S E ++
Sbjct: 159 LGSGKTWVAL------DVCLSYKVQCKMDFKIF--------W----LNLKNCNSPETVLE 200
Query: 271 QVQAKFYT-DQRTSSKPDLIFTTKPQTGAI------IFQ--------------CDEE--- 306
+Q Y D +S+ D K + +I + + + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 307 ---GGCQIV 312
C+I+
Sbjct: 261 AFNLSCKIL 269
Score = 33.7 bits (76), Expect = 0.083
Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 47/207 (22%)
Query: 27 IPTAKKTLDII----------------AKKKDVDNWKD--ILYLGELQTKLAVSLKEMID 68
IPT L +I K V+ + + + +L V L+
Sbjct: 387 IPT--ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 69 IADAILHPEAYTKEEVQEILEVSEEELDSDIL---------TPNTRSVASF-KVKQPL-F 117
+ +I+ + Y + + ++ LD + + F V F
Sbjct: 445 LHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 118 VQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSE--EELDSDILT----PNTRSVAS 171
+++ + ++ NT F I + E L + IL + S
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 172 --FKVKQRAL-----HVYEEAYR-VER 190
+ + AL ++EEA++ V+R
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 53.4 bits (128), Expect = 2e-08
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 201 EEQKLQQLGTLMNQSHTSL-ATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL 259
E+ K +++ + + L + L L ++ A A+ +GAG G C +AL
Sbjct: 246 EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIAL 304
Query: 260 SDKSSCEALVTQ 271
S + +
Sbjct: 305 SFDAQSTKTLKN 316
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 26/95 (27%)
Query: 7 ISSPFHSCSGSASLLV-TTDSIPT--AKKTLDIIAKK-----KDVDNWKDILYLGELQTK 58
++SPFHS LLV +D I K + AK D + D L+
Sbjct: 423 VASPFHS-----HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD------LR-V 470
Query: 59 LAVSLKEMIDIADAILH-P---EAYTKEEVQEILE 89
L+ S+ E I D I+ P E T+ + IL+
Sbjct: 471 LSGSISE--RIVDCIIRLPVKWETTTQFKATHILD 503
Score = 42.3 bits (99), Expect = 2e-04
Identities = 47/249 (18%), Positives = 84/249 (33%), Gaps = 76/249 (30%)
Query: 51 YLGELQTKL----AVSLKEMIDIADAILHPEAYTKEEVQEI----LEVSEEELDSDILTP 102
Y EL+ L V + ++I + L T + +++ L + E L++ TP
Sbjct: 169 YFEELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLENPSNTP 226
Query: 103 NTRSVASFKVKQPL--FVQ--------EILEVSEEELDSDILTPNTRSVASFKVQEILEV 152
+ + S + PL +Q ++L + EL + A+ Q ++
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-----RSYLKG-ATGHSQGLV-- 278
Query: 153 SEEELDSDILTPNTRSVASF-KVKQRALHVY-------EEAYRVERF------------- 191
+ + T S SF ++A+ V EAY
Sbjct: 279 ------TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 192 ------LSVCRSDISEEQKLQQLGTLMNQS-------HTSL---ATKYECS-H-EALDSL 233
LS+ S++++EQ +Q N SL A S ++L L
Sbjct: 333 GVPSPMLSI--SNLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 234 VTCFREAGA 242
R+A A
Sbjct: 390 NLTLRKAKA 398
Score = 38.5 bits (89), Expect = 0.003
Identities = 49/303 (16%), Positives = 85/303 (28%), Gaps = 99/303 (32%)
Query: 49 ILYLGELQTKLAVSLKEMIDIADAILHPEAYT-KEEVQEILEVSEEELDSDILTPNTRS- 106
L G L+ L V A +E+ +IL E +D P T +
Sbjct: 10 TLSHGSLEHVLLVP---------TASFFIASQLQEQFNKILPEPTEGFAADD-EPTTPAE 59
Query: 107 -VASF---------KVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEE 156
V F K F ++L + E ++ L N + + ++L+ ++
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQF-DQVLNLCLTEFENCYLEGN--DIHAL-AAKLLQENDTT 115
Query: 157 LDS--DILT-----------PNTRSVAS--FK-VKQRALHVY--------EEAYRVERFL 192
L +++ P + S F+ V + + + Y F
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY----F- 170
Query: 193 SVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAG-AYGARLTGAG 251
EE L+ L H + + S E L L+ +A + L
Sbjct: 171 --------EE--LRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 252 WGGCVVALSDKSS-------CEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCD 304
W L + S+ + S P LI Q +
Sbjct: 218 W------LENPSNTPDKDYLLSIPI--------------SCP-LIGVI--QLAHYVVTAK 254
Query: 305 EEG 307
G
Sbjct: 255 LLG 257
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 40.6 bits (95), Expect = 6e-04
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 208 LGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVA--LSDKSSC 265
L L+ + T S + D + + + GA G+ L VV K
Sbjct: 494 LQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLI-------VVPFNQGSKQDV 546
Query: 266 EALVTQVQAKFYTDQRTSS---KPDLI--FTTKPQTGAII 300
EAL+ + Y ++ D I F P+ G +
Sbjct: 547 EALIEFI----YDTEKNGGLGWDLDAIIPFAAIPEQGIEL 582
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA
repair, 8-oxoguanine, base EX repair, PSI-2, protein
structure initiative; 1.50A {Thermotoga maritima}
Length = 219
Score = 36.2 bits (83), Expect = 0.007
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Query: 69 IADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEE 128
+D I H + +E ++E+ E + + + FK L + E E
Sbjct: 2 GSDKIHHHHHHMEELLKEL-----ERIREEAKPLVEQRFEEFK---RLGEEGTEEDLFCE 53
Query: 129 LDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRV 188
L +LT N + + Q+ + L + L R V ++RA + E +
Sbjct: 54 LSFCVLTANWSAEGGIRAQKEIGKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL 113
Query: 189 ERFLSVCRSDISE 201
+ ++ + D +
Sbjct: 114 GKLKNLVKGDPFQ 126
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 36.4 bits (85), Expect = 0.008
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 230 LDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLI 289
L + + GAY A L+GA G V+ + ++ L T +Q +
Sbjct: 227 LAQIRDVAKNQGAYAACLSGA--GPTVLVFAPRNLANKLQTSLQTLEIDADVLLLDVE-- 282
Query: 290 FTTKPQTGAIIFQ 302
+GA +F+
Sbjct: 283 -----GSGAEVFR 290
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase;
HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB:
3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Length = 306
Score = 29.4 bits (67), Expect = 1.4
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 227 HEALDSLVTCFREAGAYGARLTGAGWGGCVVAL-SDKSSCEALVTQVQAKFYTDQ 280
AL + EAGA ++G+ G L + SS + Q+
Sbjct: 234 DPALARALRAGVEAGALAGIVSGS--GPTCAFLCTSASSAIDVGAQLSGAGVCRT 286
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB:
3knt_A*
Length = 214
Score = 29.3 bits (65), Expect = 1.4
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 84 VQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVAS 143
+++I E+ E+ I + + FK + +E + EL ILT N +
Sbjct: 11 IKKIEELKNSEIKDIID----KRIQEFKSFKNKSNEEWFK----ELCFCILTANFTAEGG 62
Query: 144 FKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYE 183
++Q+ + L + L +++ ++RA ++
Sbjct: 63 IRIQKEIGDGFLTLPREELEEKLKNLGHRFYRKRAEYIVL 102
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical,
structural genomics, montreal-kingston bacter structural
genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Length = 108
Score = 27.8 bits (62), Expect = 1.7
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 198 DISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 235
++++ QK QQ+ +M + A+ ++
Sbjct: 17 NLTDAQK-QQIREIMKGQRDQMKRPPLEERRAMHDIIA 53
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 29.1 bits (66), Expect = 2.0
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 226 SHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKF 276
A V G+ G +S+ + L+ QVQA F
Sbjct: 40 DRAAAQETVRLLGGPGSKEGPPRGNHAA-FQADVSEARAARCLLEQVQACF 89
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET:
ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5
d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Length = 296
Score = 29.1 bits (66), Expect = 2.0
Identities = 5/38 (13%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 239 EAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKF 276
+ YG ++G+ G ++A + + + ++ +
Sbjct: 246 KDKVYGITISGS--GPSIIAFPKEEFIDEVENILRDYY 281
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress
response-related, signaling P; 2.70A {Escherichia coli}
Length = 138
Score = 27.6 bits (61), Expect = 2.8
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 198 DISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 235
++++ QK QQ+ +M + A+ ++T
Sbjct: 33 NLTDAQK-QQIREIMKGQRDQMKRPPLEERRAMHDIIT 69
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 28.5 bits (63), Expect = 2.9
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 28 PTAKKTLDIIAKKK-------DVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYT 80
P A K L ++ KK+ DV +++L L + LK +DI + +T
Sbjct: 70 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILN------DFT 123
Query: 81 KEEVQEILEVSEE 93
+ ++E++ +++
Sbjct: 124 LDVMKELITLAKC 136
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit,
GRAM-positive bacteria, nucleotidyltransferase,
transcription, transferase; NMR {Bacillus subtilis}
Length = 99
Score = 27.1 bits (60), Expect = 3.0
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 66 MIDIADAILH----PEAYTK--EEVQEILEVSEEELDSDI 99
+++IA + P + + E+ +L V +EEL I
Sbjct: 15 LVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRI 54
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway,
envelope stress, transduction; HET: MSE; 1.45A
{Escherichia coli str} PDB: 3qzc_A
Length = 145
Score = 27.6 bits (61), Expect = 3.5
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 198 DISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 235
++E Q+ QQ+ LM Q+ E + LVT
Sbjct: 45 SLTEHQR-QQMRDLMQQARHEQPPVNVSELETMHRLVT 81
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
unusual catalysis, disease mutati glycosyltransferase,
lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo
sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A*
3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A*
3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A*
3l0n_A* ...
Length = 260
Score = 28.0 bits (62), Expect = 4.0
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 28 PTAKKTLDIIAKKK-------DVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYT 80
P A K L ++ KK+ DV +++L L + LK +DI + +T
Sbjct: 18 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILN------DFT 71
Query: 81 KEEVQEILEVSEE 93
+ ++E++ +++
Sbjct: 72 LDVMKELITLAKC 84
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 27.5 bits (62), Expect = 5.0
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 4/36 (11%)
Query: 245 ARLTGAGWGGCVVAL----SDKSSCEALVTQVQAKF 276
+ L G + A D A +
Sbjct: 50 SALRQRFPGARLFASVCDVLDALQVRAFAEACERTL 85
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 28.1 bits (62), Expect = 5.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 53 GELQTK-LAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEE 93
G LQT+ L ++L +ADAIL + +T + I ++ E+
Sbjct: 578 GPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEK 619
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 27.6 bits (62), Expect = 6.1
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 208 LGTLMNQ-SHTSLATKYECSHEALDSLVTCFREAGAYGA 245
LGT + + A D+ + F A Y A
Sbjct: 54 LGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAA 92
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase;
non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus
thermophilus} SCOP: d.14.1.5 d.58.26.5
Length = 275
Score = 27.1 bits (61), Expect = 6.7
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 7/49 (14%)
Query: 228 EALDSLVTCFREAGAYGARLTGAGWGGCVVAL-SDKSSCEALVTQVQAK 275
E + R G G ++G+ G L ++A
Sbjct: 215 EVRGRM----RALGLRGVLMSGS--GSAFFGLAEGPDHARRAAEALRAW 257
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 27.1 bits (61), Expect = 6.8
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 239 EAGAYGARLTGAGWGGCVVAL--SDKSSCEALVTQVQAKF 276
+ AG A+ +D SCE +V A F
Sbjct: 62 HVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 27.1 bits (61), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 69 IADAILHPE------AYTKEEVQEILEVSEEEL 95
IAD + KE+V +IL VS+EEL
Sbjct: 233 IADGAQTQHLGNYTFSIIKEKVDDILTVSDEEL 265
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 27.1 bits (61), Expect = 8.5
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 69 IADAIL-----HPEAYTKEEVQEILEVSEEEL 95
IAD + + ++ V +I V+E+E+
Sbjct: 236 IADGVKSSIGLNTWPIIRDLVDDIFTVTEDEI 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,527,814
Number of extensions: 265312
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 55
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.8 bits)