RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7887
(315 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 99.4 bits (247), Expect = 8e-26
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 142 ASFKVQEILEV-SEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDIS 200
A ++Q L++ S EL ++ NT + + +RA H E R +
Sbjct: 30 ALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFV---- 85
Query: 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLV-TCFREAGAYGARLTGAGWGGCVVAL 259
L + G L+N SH SL YE + LD+L T ++AG GAR+TGAG+GGC +AL
Sbjct: 86 -AGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIAL 144
Query: 260 SDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298
+ A V + + + + +G+
Sbjct: 145 VAHDNVSAFRKAVGQVYE--EVVGYPAS-FYVAQIGSGS 180
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 91.3 bits (226), Expect = 6e-23
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 233
++ ++ E RV + E ++++G ++ +H LA Y S E LD
Sbjct: 54 HRKFFSYIVRENARVLEVRDALK-----EGDIEKVGKILTTAHWDLAENYRVSCEELDFF 108
Query: 234 VTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTK 293
V E GAYGARLTGAG+GG +AL DK + + + ++ + S K F K
Sbjct: 109 VKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYL--AKFSWKAK-YFVVK 165
Query: 294 PQTGA 298
P G
Sbjct: 166 PSDGV 170
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 84.0 bits (207), Expect = 3e-20
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Query: 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 233
+RA HV E R + + R + G LM +SH SL YE S LD L
Sbjct: 58 GFRRARHVVGEIRRTAQAAAALR-----RGDYRAFGRLMVESHRSLRDDYEVSCPELDQL 112
Query: 234 VTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTT 292
V G YG+R+TG G+GGC V L + S+ + +Q + + +
Sbjct: 113 VEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGGTAT-------FYLS 165
Query: 293 KPQTGA 298
+ GA
Sbjct: 166 QAADGA 171
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 66.9 bits (163), Expect = 4e-14
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 174 VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 233
+ + E RV + ++ L LM+ + L H +LD L
Sbjct: 39 LLTSIDAISLECERVLG----EMAAAPVPEQYLVLEELMDMNQHHLN-ALGVGHASLDQL 93
Query: 234 VTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKF 276
G ++LTGAG GGC + L A V +
Sbjct: 94 CQVTAAHG-LHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 55.0 bits (132), Expect = 4e-10
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 169 VASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHE 228
V + +++E +V + + + + G LM ++H L K S
Sbjct: 29 VNEVAKIENKDEIFKEIDKVID-------EALKIKNKEDFGKLMTKNHELL-KKLNISTP 80
Query: 229 ALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFY 277
LD +V G +GA+LTGAG GGCV+ L ++ + L+ ++ +
Sbjct: 81 KLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDV 128
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 40.1 bits (93), Expect = 6e-05
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 156 ELDSDILTPNTRSVASFK--VKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMN 213
L+ D L T+ VA V+Q ++ + + V + E+ K +++ +
Sbjct: 3 TLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVE 62
Query: 214 QSHTSLAT-KYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVAL 259
+ L + L L ++ A+ +GAG G C +AL
Sbjct: 63 VASKLLEGLSTDIYTPLLRQLKEASQDLQ-AVAKSSGAGGGDCGIAL 108
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 29.1 bits (64), Expect = 0.70
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 249 GAGWGGCVVA--LSDKSSCEALV 269
G G G VA L++ + LV
Sbjct: 31 GGGLTGLTVAAKLTENPKIKVLV 53
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 28.8 bits (63), Expect = 0.91
Identities = 6/17 (35%), Positives = 7/17 (41%), Gaps = 2/17 (11%)
Query: 249 GAGWGGCVVA--LSDKS 263
G+G GC A L
Sbjct: 11 GSGPIGCTYARELVGAG 27
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 28.3 bits (62), Expect = 1.1
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 249 GAGWGGCVVA--LSDKSSCEALV 269
G G G A L++ + LV
Sbjct: 24 GGGLTGLTTAARLTENPNISVLV 46
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 28.3 bits (62), Expect = 1.1
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 249 GAGWGGCVVA--LSDKS 263
G+G+GG V A L+
Sbjct: 14 GSGYGGAVAALRLTQAG 30
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 28.4 bits (62), Expect = 1.3
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 249 GAGWGGCVVA--LSDK 262
G G+G V A L +
Sbjct: 9 GTGYGAAVSALRLGEA 24
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 28.1 bits (61), Expect = 1.6
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 249 GAGWGGCVVA--LSDKS 263
GAG GG + A LS+
Sbjct: 9 GAGPGGIIAADRLSEAG 25
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 1.7
Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 14/130 (10%)
Query: 23 TTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEM-IDIADAILH-PEAYT 80
T + ++ +D++ D N + I + E+ + L + + +I + E Y
Sbjct: 371 TERDVSVRQRAVDLLYAMCDRSNAQQI--VAEMLSYLETADYSIREEIVLKVAILAEKYA 428
Query: 81 KEEVQ------EILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDIL 134
+ ++ ++ + + ++ V + + + E L +
Sbjct: 429 VDYTWYVDTILNLIRIAGDYVSEEVWY----RVIQIVINRDDVQGYAAKTVFEALQAPAC 484
Query: 135 TPNTRSVASF 144
N V +
Sbjct: 485 HENLVKVGGY 494
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 27.5 bits (60), Expect = 2.4
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 249 GAGWGGCVVA--LSDKSS 264
G G GC +A LS+K
Sbjct: 33 GGGTSGCPLAATLSEKYK 50
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 133
Score = 26.2 bits (57), Expect = 2.8
Identities = 7/74 (9%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 203 QKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDK 262
+ G M + + YG ++G+ G ++A +
Sbjct: 49 KDKSLFGRYMMSDKV--IEPVRGKLIPNYFKIKEEVKDKVYGITISGS--GPSIIAFPKE 104
Query: 263 SSCEALVTQVQAKF 276
+ + ++ +
Sbjct: 105 EFIDEVENILRDYY 118
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 25.9 bits (57), Expect = 4.8
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 61 VSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQE 120
V ++EM+DI D L E + V ILE+ P+ +S Q L +
Sbjct: 44 VKVEEMVDIEDLRLRKEIKGDDMVHYILELFWH--------PDILLASSL---QKLLIAR 92
Query: 121 ILEVSEE 127
++E+
Sbjct: 93 LVELLWN 99
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 294
Score = 26.3 bits (57), Expect = 4.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 25 DSIPTAKKTLDIIAKKKDVDNWKDILYLGEL 55
D IP + D+ A K + L + EL
Sbjct: 8 DPIPAGNRNYDVQAVKDRIAASG--LSISEL 36
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 26.4 bits (58), Expect = 4.8
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 146 VQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISE---E 202
V++IL EE + T + + E + + + ISE +
Sbjct: 254 VEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQ--EIMDSIYENFTAEKISISESIKK 311
Query: 203 QKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGAR 246
K Q + L + LA++ S++ L ++C Y +
Sbjct: 312 IKAQIIDELFSYEVKRLASQLGISYDILRDYLSCIDVYRTYANQ 355
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain
{Vibrio cholerae [TaxId: 666]}
Length = 129
Score = 24.9 bits (54), Expect = 8.9
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 51 YLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEV------SEEELDSDILTPNT 104
++ ++ E + + I P A +E+ + + E + +
Sbjct: 31 LKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVEAAAQLPRELF 90
Query: 105 RSVASFKVKQPLFVQEI-----LEVSEEELDSDI 133
A +V L + E+ L+ EE++ + I
Sbjct: 91 EEQAKRRVVVGLLLGEVIRTHELKADEEKVKALI 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,082,986
Number of extensions: 48126
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 23
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)