BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7890
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 59 KSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 118
+ + +Y EA RV +F +C + E +Q LG LMNQSH S YECS LD LV
Sbjct: 350 QRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVD 407
Query: 119 CFREAGAYGARLTGAGW 135
R+ GA G+RLTGAGW
Sbjct: 408 ICRKFGAQGSRLTGAGW 424
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 64 IYLEAYRVERF--LSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFR 121
+Y E+ RV + L S ++E +Q G LMN+S S YECS +D + +
Sbjct: 417 VYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIAL 476
Query: 122 EAGAYGARLTGAGW 135
G+YG+RLTGAGW
Sbjct: 477 SNGSYGSRLTGAGW 490
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 81 DISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 135
D +E ++++G ++ +H LA Y S E LD V E GAYGARLTGAG+
Sbjct: 253 DALKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGF 307
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 88 LQQLGTLMNQSHTSLATKYECSHEALDSLV-TCFREAGAYGARLTGAGW 135
L + G L+N SH SL YE + LD+L T ++AG GAR+TGAG+
Sbjct: 322 LTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGF 370
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 81 DISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 135
D +E ++++G ++ +H LA YE S + LD V + GAYGARLTGAG+
Sbjct: 251 DALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGF 305
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 64 IYLEAYRVERFLSVCRSDI--SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFR 121
+Y E+ RV + L + S ++E G LMN+S S YECS + + +
Sbjct: 389 VYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIAL 448
Query: 122 EAGAYGARLTGAGW 135
G++G+RLTGAGW
Sbjct: 449 ANGSFGSRLTGAGW 462
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 64 IYLEAYRVERFLSVCRSDI--SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFR 121
+Y E+ RV + L + S ++E G LMN+S S YECS + + +
Sbjct: 374 VYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIAL 433
Query: 122 EAGAYGARLTGAGW 135
G++G+RLTGAGW
Sbjct: 434 ANGSFGSRLTGAGW 447
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 80 SDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 134
SD+ E K + L + N+ H L SH+ ++ L+ +E GA +LTGAG
Sbjct: 218 SDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKENGAIAGKLTGAG 271
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 84 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 134
++ LQ+LG LMN +H L + + S L+S+V R GA GA+L+G G
Sbjct: 238 QKGDLQRLGQLMNANH-DLCRQIDVSCRELESIVQTCRTYGALGAKLSGTG 287
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 84 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 134
++ LQ+LG L N +H L + + S L+S+V R GA GA+L+G G
Sbjct: 238 QKGDLQRLGQLXNANH-DLCRQIDVSCRELESIVQTCRTYGALGAKLSGTG 287
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 79 RSDISEEQK-LQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW-- 135
+++I+ QK + LG +++Q+H L S EA DSLV GA GA+++G G
Sbjct: 202 QAEIAISQKDAEGLGQILSQAHLHLKEIGVSSLEA-DSLVETALSHGALGAKMSGGGLGG 260
Query: 136 CI 137
CI
Sbjct: 261 CI 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.130 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,890,160
Number of Sequences: 62578
Number of extensions: 173571
Number of successful extensions: 532
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 14
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)