Query psy7890
Match_columns 196
No_of_seqs 176 out of 1341
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 21:24:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 6.4E-30 1.4E-34 233.5 12.5 127 37-168 246-389 (390)
2 PLN02865 galactokinase 100.0 4.6E-29 1E-33 230.7 12.8 127 37-168 275-423 (423)
3 PTZ00290 galactokinase; Provis 99.9 1.4E-27 3.1E-32 223.2 12.4 118 51-168 322-456 (468)
4 PRK05101 galactokinase; Provis 99.9 1.6E-26 3.4E-31 210.0 12.5 125 38-167 241-381 (382)
5 PLN02521 galactokinase 99.9 5.2E-26 1.1E-30 213.9 11.5 114 55-168 359-494 (497)
6 PRK00555 galactokinase; Provis 99.9 2.8E-24 6E-29 194.4 12.7 126 38-168 223-362 (363)
7 TIGR00131 gal_kin galactokinas 99.9 4.2E-24 9.1E-29 193.5 11.1 125 38-167 243-385 (386)
8 PRK05322 galactokinase; Provis 99.9 9.1E-24 2E-28 192.4 12.6 125 38-167 246-386 (387)
9 PRK03817 galactokinase; Provis 99.9 6.3E-21 1.4E-25 170.4 13.1 110 55-169 229-351 (351)
10 KOG0631|consensus 99.8 3.1E-19 6.7E-24 166.7 9.9 90 55-144 353-443 (489)
11 COG1577 ERG12 Mevalonate kinas 99.5 2.6E-14 5.7E-19 128.1 10.1 79 61-145 202-281 (307)
12 TIGR00549 mevalon_kin mevalona 99.5 2.5E-14 5.4E-19 122.5 8.6 68 69-142 206-273 (273)
13 PTZ00298 mevalonate kinase; Pr 99.4 2.9E-12 6.4E-17 114.2 12.4 69 70-144 226-294 (328)
14 TIGR01220 Pmev_kin_Gr_pos phos 99.4 2.4E-12 5.2E-17 116.5 10.0 76 63-144 249-330 (358)
15 PLN02677 mevalonate kinase 99.3 6.1E-12 1.3E-16 115.8 11.1 103 63-167 263-381 (387)
16 PF08544 GHMP_kinases_C: GHMP 99.3 4.5E-12 9.7E-17 90.5 6.4 66 74-144 1-67 (85)
17 COG2605 Predicted kinase relat 99.3 6.9E-12 1.5E-16 112.3 7.7 80 59-145 220-300 (333)
18 PRK03926 mevalonate kinase; Pr 99.3 4.5E-11 9.8E-16 104.3 11.7 91 73-169 203-300 (302)
19 PRK13412 fkp bifunctional fuco 99.3 2.4E-11 5.3E-16 122.3 10.2 76 63-144 859-936 (974)
20 KOG1511|consensus 98.8 2.6E-08 5.6E-13 91.3 8.6 80 63-145 263-346 (397)
21 PRK01212 homoserine kinase; Pr 98.3 1.8E-06 3.9E-11 75.5 8.0 94 64-167 194-300 (301)
22 PLN02451 homoserine kinase 98.1 1.3E-05 2.9E-10 73.4 9.3 94 68-169 258-366 (370)
23 PRK00128 ipk 4-diphosphocytidy 97.8 2.5E-05 5.4E-10 68.0 4.8 64 71-144 194-257 (286)
24 TIGR01920 Shik_kin_archae shik 97.7 9.4E-05 2E-09 64.5 7.0 63 69-145 181-243 (261)
25 PRK03188 4-diphosphocytidyl-2- 97.6 0.00012 2.6E-09 64.3 6.3 89 70-169 197-296 (300)
26 TIGR00191 thrB homoserine kina 97.5 0.00032 6.8E-09 61.9 7.8 89 68-167 198-301 (302)
27 PRK14614 4-diphosphocytidyl-2- 97.2 0.00042 9E-09 60.8 4.9 35 109-145 221-255 (280)
28 PRK02534 4-diphosphocytidyl-2- 97.2 0.00099 2.1E-08 59.1 6.5 65 70-144 210-275 (312)
29 TIGR01219 Pmev_kin_ERG8 phosph 97.1 0.0029 6.2E-08 60.0 9.3 58 87-144 353-416 (454)
30 PRK14613 4-diphosphocytidyl-2- 96.6 0.0045 9.6E-08 55.1 5.7 63 71-144 208-271 (297)
31 TIGR00154 ispE 4-diphosphocyti 96.5 0.004 8.7E-08 55.1 5.1 44 99-144 216-259 (293)
32 PRK01123 shikimate kinase; Pro 96.0 0.012 2.7E-07 51.6 5.5 61 70-144 192-252 (282)
33 PRK14615 4-diphosphocytidyl-2- 95.9 0.0099 2.1E-07 52.8 4.2 34 109-144 239-272 (296)
34 PRK14609 4-diphosphocytidyl-2- 95.5 0.012 2.6E-07 51.7 3.1 35 109-145 218-252 (269)
35 PTZ00299 homoserine kinase; Pr 94.8 0.093 2E-06 47.9 6.9 94 65-169 203-323 (336)
36 PRK14612 4-diphosphocytidyl-2- 94.7 0.035 7.7E-07 48.4 3.9 34 109-144 216-249 (276)
37 PRK14608 4-diphosphocytidyl-2- 93.5 0.079 1.7E-06 46.8 3.6 34 109-144 229-263 (290)
38 PRK14616 4-diphosphocytidyl-2- 93.2 0.22 4.7E-06 43.7 5.9 54 85-144 205-258 (287)
39 COG0083 ThrB Homoserine kinase 93.1 0.57 1.2E-05 42.5 8.5 95 64-168 190-297 (299)
40 COG1907 Predicted archaeal sug 92.7 0.84 1.8E-05 41.7 9.0 83 72-162 205-304 (312)
41 TIGR00144 beta_RFAP_syn beta-R 87.6 5.8 0.00012 35.8 9.9 90 67-167 216-323 (324)
42 KOG4644|consensus 85.2 3.8 8.1E-05 40.7 7.7 68 71-144 837-907 (948)
43 PRK14610 4-diphosphocytidyl-2- 81.0 2.1 4.5E-05 37.8 4.0 34 109-144 221-255 (283)
44 PRK14611 4-diphosphocytidyl-2- 71.9 4.7 0.0001 35.2 3.6 65 69-144 189-253 (275)
45 COG1947 IspE 4-diphosphocytidy 60.0 5.6 0.00012 36.0 1.8 35 109-145 224-258 (289)
46 PRK00343 ipk 4-diphosphocytidy 42.6 35 0.00076 29.9 3.9 32 109-144 216-247 (271)
47 PRK05905 hypothetical protein; 41.1 28 0.0006 30.8 3.1 25 109-134 222-246 (258)
48 PF03991 Prion_octapep: Copper 41.1 13 0.00027 16.6 0.5 6 131-136 2-7 (8)
49 COG0024 Map Methionine aminope 38.8 72 0.0016 28.4 5.3 58 87-144 13-73 (255)
50 PF15136 UPF0449: Uncharacteri 38.1 1E+02 0.0022 23.8 5.3 40 55-97 53-92 (97)
51 PRK00650 4-diphosphocytidyl-2- 37.5 44 0.00096 30.1 3.8 34 109-144 205-241 (288)
52 PRK00068 hypothetical protein; 27.9 1.4E+02 0.003 31.6 6.0 83 15-105 860-966 (970)
53 KOG1537|consensus 26.5 37 0.0008 31.2 1.4 112 23-144 198-317 (355)
54 PF07862 Nif11: Nitrogen fixat 25.5 1.2E+02 0.0026 19.5 3.5 38 85-124 3-40 (49)
55 KOG2530|consensus 24.9 31 0.00067 33.4 0.7 56 124-184 206-261 (483)
56 TIGR01240 mevDPdecarb diphosph 24.6 4.3E+02 0.0094 23.7 8.0 66 70-140 212-287 (305)
57 smart00594 UAS UAS domain. 23.4 68 0.0015 24.3 2.3 43 145-187 77-121 (122)
58 KOG4519|consensus 21.9 4.1E+02 0.0088 25.4 7.3 60 108-167 380-449 (459)
59 PRK07758 hypothetical protein; 20.2 1.2E+02 0.0026 23.4 2.9 47 73-124 45-91 (95)
60 PF03118 RNA_pol_A_CTD: Bacter 20.1 84 0.0018 22.0 2.0 37 84-120 28-64 (66)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.4e-30 Score=233.47 Aligned_cols=127 Identities=25% Similarity=0.298 Sum_probs=113.1
Q ss_pred hhhhcCchhhhhccCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHH
Q psy7890 37 TKLSSVVVNALDFGSGGW---WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEAL 113 (196)
Q Consensus 37 ~~Lr~~~~~~l~~~~~~l---~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pel 113 (196)
..|++++...+....+.+ +..++|++|+++||+||+++++|| +++|+.+||+||++||.||+++|++||||+
T Consensus 246 ~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al-----~~~dl~~fG~Lm~~SH~slrddyevt~pEl 320 (390)
T COG0153 246 KSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKAL-----RSGDLTEFGELMNESHESLRDDYEVTCPEL 320 (390)
T ss_pred hhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhcccccchhH
Confidence 567778887777776666 347899999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCceEEEccCCCcceEEEeeh---------hhHHhcc----CCCcEEEeeCCccchhh
Q psy7890 114 DSLVTCFREA-GAYGARLTGAGWCISQDAHLV---------NIMAWVQ----SQPRWCISQDAHLVNIM 168 (196)
Q Consensus 114 D~Lv~~A~~~-Ga~GaKltGaGfGGcviaLv~---------~v~~~Y~----~~p~~~i~~~~~g~~i~ 168 (196)
|+|+++|... |++||||||||||||+|+|+| .+.++|. ..|.||+++|++|+++.
T Consensus 321 D~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 321 DTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVTGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred HHHHHHHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhhcCccccEEEEeccCCcccc
Confidence 9999999985 889999999999999999999 2455673 36999999999999864
No 2
>PLN02865 galactokinase
Probab=99.96 E-value=4.6e-29 Score=230.69 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=114.6
Q ss_pred hhhhcCchhhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy7890 37 TKLSSVVVNALDFGSGGW-WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDS 115 (196)
Q Consensus 37 ~~Lr~~~~~~l~~~~~~l-~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~ 115 (196)
..||+++...+...+..+ +..++|++|+++||+||.+++++| +++|++.||+||++||.||+++|++||||+|.
T Consensus 275 ~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al-----~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~ 349 (423)
T PLN02865 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAW-----ASGNLEEFGKLISASGLSSIENYECGCEPLIQ 349 (423)
T ss_pred hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHhhhhHHhhccCCcHHHHH
Confidence 467888888777666666 788999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHH-cCCceEEEccCCCcceEEEeeh---------hhHHhcc-----------CCCcEEEeeCCccchhh
Q psy7890 116 LVTCFRE-AGAYGARLTGAGWCISQDAHLV---------NIMAWVQ-----------SQPRWCISQDAHLVNIM 168 (196)
Q Consensus 116 Lv~~A~~-~Ga~GaKltGaGfGGcviaLv~---------~v~~~Y~-----------~~p~~~i~~~~~g~~i~ 168 (196)
|+++|++ .|++|+||||||||||+++|+| .+.++|. .+|.+|+++|++|++++
T Consensus 350 lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 350 LYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred HHHHHHhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 9999999 5999999999999999999999 3566663 25899999999999864
No 3
>PTZ00290 galactokinase; Provisional
Probab=99.95 E-value=1.4e-27 Score=223.17 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=102.2
Q ss_pred CCCh-HHHHHHHHHHHHHHHHHHHHHHHhccc-cc-chhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-cCCc
Q psy7890 51 SGGW-WFESKSSHEIYLEAYRVERFLSVCRSD-IS-EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFRE-AGAY 126 (196)
Q Consensus 51 ~~~l-~~~~~Ra~Hi~~E~~RV~ea~~AL~~~-~~-~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~-~Ga~ 126 (196)
+..+ +..++|++|+++||+||.+|+++|++. .+ ..+|+++||+||++||.||+++|++||||+|.|++++.+ .|++
T Consensus 322 ~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~ 401 (468)
T PTZ00290 322 KPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVA 401 (468)
T ss_pred hhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCc
Confidence 3455 778999999999999999999999421 11 246699999999999999999999999999999998755 6999
Q ss_pred eEEEccCCCcceEEEeeh---------hhHHhcc----CCCcEEEeeCCccchhh
Q psy7890 127 GARLTGAGWCISQDAHLV---------NIMAWVQ----SQPRWCISQDAHLVNIM 168 (196)
Q Consensus 127 GaKltGaGfGGcviaLv~---------~v~~~Y~----~~p~~~i~~~~~g~~i~ 168 (196)
||||||||||||+++|++ .+.+.|. .+|.+|+++|++|++++
T Consensus 402 GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g~~~~~~~~~~~~Ga~~~ 456 (468)
T PTZ00290 402 GGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKARFGVENDVYPVVAGDGAFVV 456 (468)
T ss_pred EEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHhhCCCCcEEEEecCCCcEEE
Confidence 999999999999999998 3556673 35999999999999987
No 4
>PRK05101 galactokinase; Provisional
Probab=99.94 E-value=1.6e-26 Score=210.03 Aligned_cols=125 Identities=19% Similarity=0.281 Sum_probs=109.4
Q ss_pred hhhcCchhhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy7890 38 KLSSVVVNALDFGSGGW-WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 116 (196)
Q Consensus 38 ~Lr~~~~~~l~~~~~~l-~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~L 116 (196)
.|++++...+......+ +..++|+.|+++|++||.++.+|| +++|++.||+||++||.+|++.|++|||++|.|
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al-----~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~l 315 (382)
T PRK05101 241 ALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASAL-----AAGDLKRMGELMAESHASMRDDFEITVPQIDTL 315 (382)
T ss_pred hhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHH
Confidence 45666655555444455 778999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHc-CC-ceEEEccCCCcceEEEeeh---------hhHHhccC----CCcEEEeeCCccchh
Q psy7890 117 VTCFREA-GA-YGARLTGAGWCISQDAHLV---------NIMAWVQS----QPRWCISQDAHLVNI 167 (196)
Q Consensus 117 v~~A~~~-Ga-~GaKltGaGfGGcviaLv~---------~v~~~Y~~----~p~~~i~~~~~g~~i 167 (196)
+++|+++ |+ +||||||||||||+++|+| .+.++|.. .|.+|+++|++|+++
T Consensus 316 v~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 316 VEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAKTGLKETFYVCKASQGAGQ 381 (382)
T ss_pred HHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCCCccc
Confidence 9999996 97 5889999999999999999 35667743 699999999999875
No 5
>PLN02521 galactokinase
Probab=99.93 E-value=5.2e-26 Score=213.91 Aligned_cols=114 Identities=37% Similarity=0.496 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCC
Q psy7890 55 WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 134 (196)
Q Consensus 55 ~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaG 134 (196)
+.+++|++|+++||.||.+|+++|++......++++||+||++||.+|+++|++|||++|.|+++|+++|++||||||||
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG 438 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAG 438 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCC
Confidence 36889999999999999999999943221122499999999999999999999999999999999999999999999999
Q ss_pred CcceEEEeehh---------hHHhccC-------------CCcEEEeeCCccchhh
Q psy7890 135 WCISQDAHLVN---------IMAWVQS-------------QPRWCISQDAHLVNIM 168 (196)
Q Consensus 135 fGGcviaLv~~---------v~~~Y~~-------------~p~~~i~~~~~g~~i~ 168 (196)
||||+++|+|+ +.+.|.. .|.+|+|+|++|+.+.
T Consensus 439 ~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~ 494 (497)
T PLN02521 439 WGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAIL 494 (497)
T ss_pred CCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEe
Confidence 99999999992 3455632 3899999999999863
No 6
>PRK00555 galactokinase; Provisional
Probab=99.91 E-value=2.8e-24 Score=194.37 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=108.5
Q ss_pred hhhcCchhhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy7890 38 KLSSVVVNALDFGSGGW-WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 116 (196)
Q Consensus 38 ~Lr~~~~~~l~~~~~~l-~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~L 116 (196)
.+|++....+...+... +..++|+.|+++|+.|+.+++++| .++|++.||++|+++|.++|+.+++|+|++|.|
T Consensus 223 ~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al-----~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l 297 (363)
T PRK00555 223 SLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAAL-----ADSDFTAAGQLLTASHASMRDDFEITTERIDLI 297 (363)
T ss_pred chhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHH
Confidence 45555554444332223 678899999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEEccCCCcceEEEeeh---------hhHHhcc----CCCcEEEeeCCccchhh
Q psy7890 117 VTCFREAGAYGARLTGAGWCISQDAHLV---------NIMAWVQ----SQPRWCISQDAHLVNIM 168 (196)
Q Consensus 117 v~~A~~~Ga~GaKltGaGfGGcviaLv~---------~v~~~Y~----~~p~~~i~~~~~g~~i~ 168 (196)
++.|+++|++|+|+||||||||+++|+| .+.+.|. ..|.+|+++|++|++.+
T Consensus 298 ~~~a~~~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 298 ADSAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTAGYPEPAVSRTYAAPGAGEC 362 (363)
T ss_pred HHHHHhcCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHccCCCCcEEEEecCCCcccC
Confidence 9999999999999999999999999998 2456673 36999999999999865
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.91 E-value=4.2e-24 Score=193.47 Aligned_cols=125 Identities=20% Similarity=0.261 Sum_probs=105.7
Q ss_pred hhhcCchhhhh---ccCCCh-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHH
Q psy7890 38 KLSSVVVNALD---FGSGGW-WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEAL 113 (196)
Q Consensus 38 ~Lr~~~~~~l~---~~~~~l-~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pel 113 (196)
.+|++....+. .....+ +..++|+.|+++|+.||.++.++| .++|++.||++|+++|.+|+++|++|||++
T Consensus 243 ~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al-----~~~d~~~lG~lm~~sh~~l~~~~~vs~pel 317 (386)
T TIGR00131 243 ALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAM-----KDNDFKQFGALMNESHASCDDDYECTCPEI 317 (386)
T ss_pred chhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHH-----HhCcHHHHHHHHHHhhHHHHHhcCCCCHHH
Confidence 55666555443 223344 667789999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHH-HHcCCceEEEccCCCcceEEEeeh---------hhHHhcc----CCCcEEEeeCCccchh
Q psy7890 114 DSLVTCF-REAGAYGARLTGAGWCISQDAHLV---------NIMAWVQ----SQPRWCISQDAHLVNI 167 (196)
Q Consensus 114 D~Lv~~A-~~~Ga~GaKltGaGfGGcviaLv~---------~v~~~Y~----~~p~~~i~~~~~g~~i 167 (196)
|.+++.| ..+|++||||||||||||+++|+| .+.+.|. ..|.+|++.++.|++.
T Consensus 318 d~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~~~~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 318 DELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKKTGLELTFYVIVSKPGAGS 385 (386)
T ss_pred HHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhhCCCCcEEEEEECCCcCC
Confidence 9999886 557999999999999999999998 2456672 2699999999999864
No 8
>PRK05322 galactokinase; Provisional
Probab=99.90 E-value=9.1e-24 Score=192.43 Aligned_cols=125 Identities=25% Similarity=0.242 Sum_probs=108.4
Q ss_pred hhhcCchhhhhccCCCh--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy7890 38 KLSSVVVNALDFGSGGW--WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDS 115 (196)
Q Consensus 38 ~Lr~~~~~~l~~~~~~l--~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~ 115 (196)
.|++++...++..+..+ +..++|+.|++.|+.|+.++++|| +++|++.||++|++||.+|++.|.+|+|++|.
T Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al-----~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~ 320 (387)
T PRK05322 246 SLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKAL-----KAGDLEKFGRLMNASHVSLRDDYEVTGLELDT 320 (387)
T ss_pred chhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHH
Confidence 45666666555543333 578899999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHH-cCCceEEEccCCCcceEEEeeh---------hhHHhcc----CCCcEEEeeCCccchh
Q psy7890 116 LVTCFRE-AGAYGARLTGAGWCISQDAHLV---------NIMAWVQ----SQPRWCISQDAHLVNI 167 (196)
Q Consensus 116 Lv~~A~~-~Ga~GaKltGaGfGGcviaLv~---------~v~~~Y~----~~p~~~i~~~~~g~~i 167 (196)
++++|++ .|++|+|+||||||||+++|++ .+.+.|. ..|.+|+++|++|+++
T Consensus 321 lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~Ga~~ 386 (387)
T PRK05322 321 LVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEKIGYAASFYVAEIGDGARE 386 (387)
T ss_pred HHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCccc
Confidence 9999975 7999999999999999999998 2355663 3699999999999985
No 9
>PRK03817 galactokinase; Provisional
Probab=99.85 E-value=6.3e-21 Score=170.44 Aligned_cols=110 Identities=32% Similarity=0.398 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCC
Q psy7890 55 WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 134 (196)
Q Consensus 55 ~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaG 134 (196)
+..++|+.|++.|++|+.+++.+| .++|++.||++|++||.++++.|.+|+|++|.|+++|++.|++|+|++|||
T Consensus 229 ~~~~~~~~~~v~e~~r~~~~~~al-----~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG 303 (351)
T PRK03817 229 PLLRKRAGYVLRENERVLKVRDAL-----KEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAG 303 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCC
Confidence 567889999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEeehh---------hHHhc----cCCCcEEEeeCCccchhhh
Q psy7890 135 WCISQDAHLVN---------IMAWV----QSQPRWCISQDAHLVNIMA 169 (196)
Q Consensus 135 fGGcviaLv~~---------v~~~Y----~~~p~~~i~~~~~g~~i~~ 169 (196)
||||+++|+++ +.+.| +..|.+|++.++.|+++++
T Consensus 304 ~Gg~vlal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 351 (351)
T PRK03817 304 FGGSAIALVDKGKFESIGEELLEEYKKRFGIDPKYFVVESSDGVRKIE 351 (351)
T ss_pred CCeEEEEEEchHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCceeCC
Confidence 99999999982 23344 3468999999999998763
No 10
>KOG0631|consensus
Probab=99.79 E-value=3.1e-19 Score=166.67 Aligned_cols=90 Identities=36% Similarity=0.466 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccC
Q psy7890 55 WFESKSSHEIYLEAYRVERFLSVCRSDI-SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGA 133 (196)
Q Consensus 55 ~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~-~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGa 133 (196)
...++|++|+++|+.||.++.+++.+.+ ...+.++.||+||++||.|+..+|++||||+|+|+++|+++|.+|+|+|||
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGa 432 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGA 432 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeecc
Confidence 3478999999999999999999995432 123458899999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeeh
Q psy7890 134 GWCISQDAHLV 144 (196)
Q Consensus 134 GfGGcviaLv~ 144 (196)
|||||+++++|
T Consensus 433 GwGGc~v~lvp 443 (489)
T KOG0631|consen 433 GWGGCTVALVP 443 (489)
T ss_pred ccccceeeecc
Confidence 99999999999
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.54 E-value=2.6e-14 Score=128.06 Aligned_cols=79 Identities=30% Similarity=0.272 Sum_probs=71.3
Q ss_pred HHHHHHHHHHH-HHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceE
Q psy7890 61 SHEIYLEAYRV-ERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQ 139 (196)
Q Consensus 61 a~Hi~~E~~RV-~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcv 139 (196)
..+++....++ .++..++ +++|.+.||++|+.+|..|..+. +|+|++|+|++.++++|+.|||+||||+|||+
T Consensus 202 ~~~~~~~ig~~~~~a~~al-----~~~d~e~lgelm~~nq~LL~~Lg-Vs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~ 275 (307)
T COG1577 202 IDPILDAIGELVQEAEAAL-----QTGDFEELGELMNINQGLLKALG-VSTPELDELVEAARSLGALGAKLTGAGGGGCI 275 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHhcCccccccccCCCCceE
Confidence 45666666655 4778888 89999999999999999999998 69999999999999999999999999999999
Q ss_pred EEeehh
Q psy7890 140 DAHLVN 145 (196)
Q Consensus 140 iaLv~~ 145 (196)
++|++.
T Consensus 276 IaL~~~ 281 (307)
T COG1577 276 IALAKN 281 (307)
T ss_pred EEEecc
Confidence 999984
No 12
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.53 E-value=2.5e-14 Score=122.54 Aligned_cols=68 Identities=35% Similarity=0.362 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEe
Q psy7890 69 YRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAH 142 (196)
Q Consensus 69 ~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaL 142 (196)
+++.++.++| .++|++.||++|+++|..+++. .+|+|++|.+++.+++.|++|+||||||+|||+++|
T Consensus 206 ~~~~~~~~al-----~~~d~~~lg~l~~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAAL-----QDGDVESLGELMNINQGLLKAL-GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 4778899999 8999999999999999999875 579999999999999999999999999999999986
No 13
>PTZ00298 mevalonate kinase; Provisional
Probab=99.40 E-value=2.9e-12 Score=114.19 Aligned_cols=69 Identities=29% Similarity=0.312 Sum_probs=63.6
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
++.++..+| .++|++.++++|+++|..+++.. +++|++|.+++.++++|++|+||||+|+|||+++|++
T Consensus 226 ~~~~~~~al-----~~~d~~~lg~~m~~~~~~l~~~~-v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~ 294 (328)
T PTZ00298 226 CVSEAKEAL-----QKGNLFRVGELMNANHDLCQKLT-VSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAA 294 (328)
T ss_pred HHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEec
Confidence 456788899 88999999999999999999764 6999999999999999999999999999999999986
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.37 E-value=2.4e-12 Score=116.48 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=67.6
Q ss_pred HHHHHHHHH-HHHHHHhcccccchhhHHHHHHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHcCCceEEEccCCCc
Q psy7890 63 EIYLEAYRV-ERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATK-----YECSHEALDSLVTCFREAGAYGARLTGAGWC 136 (196)
Q Consensus 63 Hi~~E~~RV-~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l-----~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfG 136 (196)
.++.++..+ .++.++| +.+|+++||++|+++|..|+.+ ..+|+|++|.|++.|+++|+ |||++|||+|
T Consensus 249 ~~l~~~~~i~~~~~~al-----~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-~aKlsGAGgG 322 (358)
T TIGR01220 249 RFLETSTDCVESAITAF-----ETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-AAKPSGAGGG 322 (358)
T ss_pred HHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc-eecCCCCCCc
Confidence 456666644 5789999 8999999999999999999987 25799999999999999997 9999999999
Q ss_pred ceEEEeeh
Q psy7890 137 ISQDAHLV 144 (196)
Q Consensus 137 GcviaLv~ 144 (196)
||+++|++
T Consensus 323 g~~ial~~ 330 (358)
T TIGR01220 323 DCGIAILD 330 (358)
T ss_pred CEEEEEeC
Confidence 99999997
No 15
>PLN02677 mevalonate kinase
Probab=99.35 E-value=6.1e-12 Score=115.77 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=75.4
Q ss_pred HHHHHHHHH-HHHHHHhcccc----cchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcc
Q psy7890 63 EIYLEAYRV-ERFLSVCRSDI----SEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCI 137 (196)
Q Consensus 63 Hi~~E~~RV-~ea~~AL~~~~----~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGG 137 (196)
.++.....+ .++.++|++.. ...+|++.+|++|+++|..|+.++ +|+|++|.++++|.+.| +|||+||||+||
T Consensus 263 ~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LG-VS~~~le~iv~~a~~~~-~~AKlTGAGgGG 340 (387)
T PLN02677 263 SVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMG-VSHSSIETVLRTTLKYK-LVSKLTGAGGGG 340 (387)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHcC-CccccccCCCCC
Confidence 455555543 57888883210 012679999999999999999998 59999999999999986 799999999999
Q ss_pred eEEEeehh---------hHHhccC-CCcEEEeeCCc-cchh
Q psy7890 138 SQDAHLVN---------IMAWVQS-QPRWCISQDAH-LVNI 167 (196)
Q Consensus 138 cviaLv~~---------v~~~Y~~-~p~~~i~~~~~-g~~i 167 (196)
|+|+|+++ +.++... ....|.+..+. |+.+
T Consensus 341 C~IaL~~~~~~~~~~~~l~~~l~~~G~~~~~~~~g~~Gv~~ 381 (387)
T PLN02677 341 CVLTLLPTLLSGTVVDKVIAELESSGFQCFTAGIGGNGVQI 381 (387)
T ss_pred EEEEEcccccchhHHHHHHHHHHHCCCeEEEEEeCCCceEE
Confidence 99999983 2222222 35666666543 5443
No 16
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.31 E-value=4.5e-12 Score=90.49 Aligned_cols=66 Identities=27% Similarity=0.344 Sum_probs=57.9
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 74 FLSVCRSDISEEQKLQQLGTLMNQSHTS-LATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 74 a~~AL~~~~~~~gD~~~fG~Lm~eSh~s-Lr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
+++|| .++|++.|+++|+++|.+ ........+|+++.+++.+.+.|++|++++|+|||||+++|++
T Consensus 1 m~~al-----~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~ 67 (85)
T PF08544_consen 1 MIKAL-----AEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCK 67 (85)
T ss_dssp HHHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEES
T ss_pred CHHHH-----HCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEEC
Confidence 46788 899999999999999985 2223456889999999999999999999999999999999994
No 17
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.29 E-value=6.9e-12 Score=112.33 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHcCCceEEEccCCCcc
Q psy7890 59 KSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-ECSHEALDSLVTCFREAGAYGARLTGAGWCI 137 (196)
Q Consensus 59 ~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~-~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGG 137 (196)
.++.|-+.+ -+.++.++| -.+|+..||++|+++|+..+.+. .+|+|.+|.+++.|+++||+|+|++|||+||
T Consensus 220 ~e~~~~mk~--~A~~~~~al-----~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gG 292 (333)
T COG2605 220 LEALHEMKA--LAYEMKDAL-----VRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGG 292 (333)
T ss_pred HHHHHHHHH--HHHHHHHHH-----HhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCcc
Confidence 444444442 345788888 89999999999999999999886 6899999999999999999999999999999
Q ss_pred eEEEeehh
Q psy7890 138 SQDAHLVN 145 (196)
Q Consensus 138 cviaLv~~ 145 (196)
+++.+|||
T Consensus 293 Fllf~~~p 300 (333)
T COG2605 293 FLLFFCDP 300 (333)
T ss_pred EEEEEeCc
Confidence 99999995
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=99.27 E-value=4.5e-11 Score=104.32 Aligned_cols=91 Identities=24% Similarity=0.212 Sum_probs=72.0
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh-----hH
Q psy7890 73 RFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN-----IM 147 (196)
Q Consensus 73 ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~-----v~ 147 (196)
++.+++ .++|++.||++|+++|..+.. +.+++|+++.+++.+++.|++|+||||+|+|||+++++++ +.
T Consensus 203 ~~~~al-----~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~ 276 (302)
T PRK03926 203 KGEELI-----LSGDYVSLGELMNINQGLLDA-LGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPEKQSEVA 276 (302)
T ss_pred HHHHHH-----hcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEeccccHHHHH
Confidence 556778 889999999999999966544 5679999999999999999999999999999999999962 22
Q ss_pred HhccC-CCcEEEeeC-Cccchhhh
Q psy7890 148 AWVQS-QPRWCISQD-AHLVNIMA 169 (196)
Q Consensus 148 ~~Y~~-~p~~~i~~~-~~g~~i~~ 169 (196)
+.... ....|++++ ..|+.|.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 277 TAIKIAGGKPIITKITDEGLRIEE 300 (302)
T ss_pred HHHHhcCCeEEEEecCCCeeEEEe
Confidence 22222 255677777 45877643
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.25 E-value=2.4e-11 Score=122.34 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=65.7
Q ss_pred HHHHHHHHH-HHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHcCCceEEEccCCCcceEE
Q psy7890 63 EIYLEAYRV-ERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-ECSHEALDSLVTCFREAGAYGARLTGAGWCISQD 140 (196)
Q Consensus 63 Hi~~E~~RV-~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~-~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcvi 140 (196)
+++.+..++ .++.+|| +++|+++||+||+++|..++.+. .+|+|++|.|++.|++ |++|+|+||||+|||++
T Consensus 859 ~~l~~ig~La~ea~~AL-----e~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI 932 (974)
T PRK13412 859 QLLHEMKAHALDMYEAI-----QRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLY 932 (974)
T ss_pred HHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEE
Confidence 355555543 5788999 89999999999999999999982 4699999999999965 79999999999999999
Q ss_pred Eeeh
Q psy7890 141 AHLV 144 (196)
Q Consensus 141 aLv~ 144 (196)
++++
T Consensus 933 ~Lak 936 (974)
T PRK13412 933 MVAK 936 (974)
T ss_pred EEEC
Confidence 9995
No 20
>KOG1511|consensus
Probab=98.77 E-value=2.6e-08 Score=91.29 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=62.8
Q ss_pred HHHHHHHHH-HHHHHHhcccccchhhH--H-HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcce
Q psy7890 63 EIYLEAYRV-ERFLSVCRSDISEEQKL--Q-QLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCIS 138 (196)
Q Consensus 63 Hi~~E~~RV-~ea~~AL~~~~~~~gD~--~-~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGc 138 (196)
-+|.++.-+ .+++.++..++ .+.+. + ++.+||..||..|..+++ |+|++|.++..+.+.| +.+|+||||+|||
T Consensus 263 ~i~~aid~is~ea~~il~~e~-~~~~~~~Eq~L~eLi~iNq~LL~alGV-sH~~le~v~~~t~k~g-i~sKLTGAGgGGc 339 (397)
T KOG1511|consen 263 AIFDAIDEISLEAVWILQREN-DEFSSPKEQKLEELIRINQDLLDALGV-SHPSLELVCTTTRKLG-IHSKLTGAGGGGC 339 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccCCCcHHHHHHHHHHHhHHHHHHhCC-CcHHHHHHHHHHHHhC-cceecccCCCCce
Confidence 456666655 36666663211 11111 3 599999999999999985 9999999999999999 6789999999999
Q ss_pred EEEeehh
Q psy7890 139 QDAHLVN 145 (196)
Q Consensus 139 viaLv~~ 145 (196)
+++|+|+
T Consensus 340 ~itlL~~ 346 (397)
T KOG1511|consen 340 VITLLKP 346 (397)
T ss_pred EEEEECC
Confidence 9999994
No 21
>PRK01212 homoserine kinase; Provisional
Probab=98.33 E-value=1.8e-06 Score=75.53 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEe
Q psy7890 64 IYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQS-HTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAH 142 (196)
Q Consensus 64 i~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eS-h~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaL 142 (196)
.+.+..|+.....++ .++|++.+++.|+.. |+..+ ...+|+++.+.+.+++.|++|++|+|+| +|++++
T Consensus 194 ~~~~~~~~~~l~~al-----~~~d~~~~~~~~~~~~~~~~~---~~~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l 263 (301)
T PRK01212 194 AVFNSSRAALLVAAL-----YTGDYELAGRAMKDVLHEPYR---AKLIPGFAEVRQAALEAGALGAGISGAG--PTVFAL 263 (301)
T ss_pred HHHHHHHHHHHHHHH-----hhCCHHHHHHHhchhheHHhH---HhhCCCHHHHHHHHHHCCCeEEEEEchh--hheeEE
Confidence 345566777888999 889999999998432 22221 1245899999999999999999999987 889999
Q ss_pred ehh---------hHHhc--cCCCcEEEeeCCc-cchh
Q psy7890 143 LVN---------IMAWV--QSQPRWCISQDAH-LVNI 167 (196)
Q Consensus 143 v~~---------v~~~Y--~~~p~~~i~~~~~-g~~i 167 (196)
++. +.+.| .....++++++.. |+.|
T Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~G~~~ 300 (301)
T PRK01212 264 CDKEDAEKVADALQKAFLQGIEGFVHVLRLDTAGARV 300 (301)
T ss_pred eccccHHHHHHHHHHhhccCCCeEEEEeccCCCceEe
Confidence 872 22333 2346778887765 6654
No 22
>PLN02451 homoserine kinase
Probab=98.13 E-value=1.3e-05 Score=73.42 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh--
Q psy7890 68 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN-- 145 (196)
Q Consensus 68 ~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~-- 145 (196)
..|+...+.++ .++|++.+++.|+..+........ ++|+++.+++.++++|++|++|||+|- |++++++.
T Consensus 258 ~~~~~~l~~al-----~~~d~~~l~~~m~nD~~~e~~r~~-~~P~l~~l~~~~~~~GA~ga~mSGSGp--tvfal~~~~~ 329 (370)
T PLN02451 258 CSQAAALVAAI-----LQGDAVLLGEALSSDKIVEPTRAP-LIPGMEAVKKAALEAGAYGCTISGAGP--TAVAVIDDEE 329 (370)
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhHHHHhh-hCccHHHHHHHHHHCCCeEEEEEccch--heEEEEcCHH
Confidence 45566677888 889999999999876444343343 789999999999999999999999986 67777751
Q ss_pred --------hHHhcc----CCCcEEEeeCCc-cchhhh
Q psy7890 146 --------IMAWVQ----SQPRWCISQDAH-LVNIMA 169 (196)
Q Consensus 146 --------v~~~Y~----~~p~~~i~~~~~-g~~i~~ 169 (196)
+.+.|. ....++++++.. |+++..
T Consensus 330 ~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 330 KGEEVGERMVEAFRKAGNLKATASVKKLDRVGARLVE 366 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeccCCCCeEEEe
Confidence 223331 347888888864 887754
No 23
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.81 E-value=2.5e-05 Score=68.03 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=52.2
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 71 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 71 V~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
+..+..++ .++|++.++++|. ..++......+|+++.+++.+++.|++|++++|+| +|++++++
T Consensus 194 ~~~~~~~l-----~~~d~~~~~~~~~---n~l~~~~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~ 257 (286)
T PRK00128 194 TEKLIEAI-----EEGDYQGICANMG---NVLENVTLKKYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFD 257 (286)
T ss_pred hHHHHHHH-----hcCCHHHHHHhcc---CcHHHHHHhhChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeC
Confidence 45677888 8899999999885 23433333248999999999999999999999999 88999986
No 24
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=97.72 E-value=9.4e-05 Score=64.52 Aligned_cols=63 Identities=24% Similarity=0.087 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 69 YRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 69 ~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
..+.++.+++ +.+|+. ++|+.+|..+......+++ +++.|++.|++|+++||+ |||+++|++.
T Consensus 181 ~~~~~~~~~~-----~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~~Galga~lSGa--G~sv~aL~~~ 243 (261)
T TIGR01920 181 PVVEEAFNLA-----LRGEYL---KAMVLNGVAYATALGYPLE----PASKALEAGAAAAGLSGK--GPSYFALTED 243 (261)
T ss_pred hHHHHHHHHH-----hhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHHcCCcEEeecCC--CCeEEEEeCC
Confidence 3455677777 778865 8899999766343333543 557789999999999996 8999999873
No 25
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.62 E-value=0.00012 Score=64.31 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=61.2
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh---
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYEC-SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN--- 145 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~v-S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~--- 145 (196)
++..+..++ .++|++.+++.|... ++. +.. .+|+++.+++.+++.|++|++|+|+|-+ ++++++.
T Consensus 197 ~~~~~~~al-----~~~d~~~l~~~~~n~---le~-~~~~~~p~l~~l~~~~~~~Galga~lSGsG~t--v~~l~~~~~~ 265 (300)
T PRK03188 197 EPDPLLAAL-----RAGDPAQLAPLLGND---LQA-AALSLRPSLRRTLRAGEEAGALAGIVSGSGPT--CAFLCADADS 265 (300)
T ss_pred cHHHHHHHH-----HcCCHHHHHHHhhCc---CHH-HHHHhCchHHHHHHHHHHCCCCEEEEEccccc--eEEEeCCHHH
Confidence 466788888 899999999998532 222 222 4899999999999999999999999875 5566652
Q ss_pred ---hHHh---ccCCCcEEE-eeCCccchhhh
Q psy7890 146 ---IMAW---VQSQPRWCI-SQDAHLVNIMA 169 (196)
Q Consensus 146 ---v~~~---Y~~~p~~~i-~~~~~g~~i~~ 169 (196)
+.+. ++..-..++ +...+|++|+.
T Consensus 266 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 266 AVDVAAALSGAGVCRTVRVATGPVPGARVVS 296 (300)
T ss_pred HHHHHHHHHhcCcceeEEEeeccccceEecc
Confidence 2222 222345555 33456666654
No 26
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=97.54 E-value=0.00032 Score=61.95 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHH--HHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 68 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSH--TSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 68 ~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh--~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
..|......++ .+++. .+++++.+.+ +..+ ...+|+++.+++.+++.|++|++++|+| +|++++++.
T Consensus 198 ~~~~~~l~~al-----~~~~~-~l~~~~~~d~l~e~~~---~~l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~ 266 (302)
T TIGR00191 198 LSHLAGLVHAI-----YQKKP-DLGAIMMKDRIHQPYR---ESLIPNLFKIKQAALEKGAYGITISGSG--PTILAMADE 266 (302)
T ss_pred HHHHHHHHHHH-----HcCCH-HHHHHHcccccchhhH---hhhCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecc
Confidence 34454556677 55654 4677766542 3333 2357899999999999999999999999 889999972
Q ss_pred h---------HHh---ccCCCcEEEeeCCc-cchh
Q psy7890 146 I---------MAW---VQSQPRWCISQDAH-LVNI 167 (196)
Q Consensus 146 v---------~~~---Y~~~p~~~i~~~~~-g~~i 167 (196)
- .+. |....++++..+.. |++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 267 EFAEQKEQDLLEVLHKQGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEcccCCCCeEe
Confidence 1 111 12236777777754 6543
No 27
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.25 E-value=0.00042 Score=60.81 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
..|+++.+++.+++.|++|++|||+| +|++++++.
T Consensus 221 ~~p~l~~i~~~~~~~Galga~lSGSG--~tv~~l~~~ 255 (280)
T PRK14614 221 RFPVIGEIKEELLAAGARGSLMSGSG--STVFGLFDD 255 (280)
T ss_pred cChHHHHHHHHHHhCCCCEEEEeccc--cceEEEeCC
Confidence 47999999999999999999999997 999999983
No 28
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.17 E-value=0.00099 Score=59.07 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HcCCceEEEccCCCcceEEEeeh
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFR-EAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~-~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
|......++ .++|++.+++.| |+.++....-..|++..+.+.++ +.|++|+.|||+| .|++++++
T Consensus 210 ~~~~l~~al-----~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~ 275 (312)
T PRK02534 210 RSGPLLQAI-----SAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFE 275 (312)
T ss_pred chhHHHHhh-----hccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeC
Confidence 334456677 888999998866 44555544337889999999898 8999999999988 89999996
No 29
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=97.10 E-value=0.0029 Score=60.04 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHH-cCCceEEEccCCCcceEEEeeh
Q psy7890 87 KLQQLGTLMNQSHTSLATKY-----ECSHEALDSLVTCFRE-AGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 87 D~~~fG~Lm~eSh~sLr~l~-----~vS~pelD~Lv~~A~~-~Ga~GaKltGaGfGGcviaLv~ 144 (196)
|+..+.+.|.++-..||.+. .|-+|++-.|++.+.+ .|++||+..|||+|.|+++|+.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~ 416 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITL 416 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEec
Confidence 78889999999998888764 3568899999999998 5999999999999999999976
No 30
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.57 E-value=0.0045 Score=55.06 Aligned_cols=63 Identities=22% Similarity=0.114 Sum_probs=47.5
Q ss_pred HHHHHHHhcccccchhhHHHHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 71 VERFLSVCRSDISEEQKLQQLGTL-MNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 71 V~ea~~AL~~~~~~~gD~~~fG~L-m~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
....+.++ ..+|++.+... +|.-+.....+ .|+++.+.+.+++.|++|++|||+ |.|++++++
T Consensus 208 ~~~~~~al-----~~~~~~~l~~~l~ndle~~~~~l----~P~~~~i~~~~~~~Ga~~~~mSGS--Gptvf~l~~ 271 (297)
T PRK14613 208 SEDLISSL-----KVGDWVSLQGRLENDFEPVAFQL----HPELGVLKDKFLEFGSSYCSLTGS--GSSMYGLVQ 271 (297)
T ss_pred HHHHHHHH-----HcCCHHHHHHHhcccchHHHHHh----CcHHHHHHHHHHHcCCCEEEEEcc--ccceEEEeC
Confidence 34566677 77888877443 45543333333 689999999999999999999999 689999987
No 31
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=96.53 E-value=0.004 Score=55.12 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 99 HTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 99 h~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
|..++.....++|+++++.+.++++|++|++|||+| +|++++++
T Consensus 216 ~ndle~~~~~~~p~l~~i~~~l~~~Ga~~a~mSGSG--~tvf~l~~ 259 (293)
T TIGR00154 216 LNDLEKVALKRHTEVAQALNWLLEYGLAPERLSGSG--ACVFALFD 259 (293)
T ss_pred cCccHHHHHhcCHHHHHHHHHHHhCCCCeEEEeccc--cceEEEeC
Confidence 444444433378999999999999999999999994 99999997
No 32
>PRK01123 shikimate kinase; Provisional
Probab=96.05 E-value=0.012 Score=51.56 Aligned_cols=61 Identities=18% Similarity=0.071 Sum_probs=40.0
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
+..++.+++ ..+|+ ..+|+.++...+.....+ +.++..++++|++|++++|+ |+|+++|++
T Consensus 192 ~~d~~~~~~-----~~~~l---~~~~~~~~l~~~~~l~~~----~~~i~~a~~~Ga~ga~lSGa--Gptv~al~~ 252 (282)
T PRK01123 192 YVDMAFELA-----LDGEY---FKAMTLNGLLYSSALGFP----TEPALEALEAGAVGVGLSGT--GPSYVAIVD 252 (282)
T ss_pred HHHHHHHHH-----hhccH---HHHHHhCCchhhhhhCCC----hHHHHHHHHCCCeEEEEecC--CCeEEEEeC
Confidence 444555555 66675 477777643332222223 24455678899999999985 799999997
No 33
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.88 E-value=0.0099 Score=52.77 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
..|+++.+.+.+.++|++|++|||+| +|+++|+.
T Consensus 239 l~P~l~~~~~~~~~~GAlga~mSGSG--ptvfaL~~ 272 (296)
T PRK14615 239 AHPELRRLKETLLRHGAAAALMSGSG--SSVFGLFR 272 (296)
T ss_pred hChHHHHHHHHHHhcCCCEEEEeccC--cceEEEeC
Confidence 78999999999999999999999999 99999986
No 34
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.47 E-value=0.012 Score=51.65 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
.+|+++.+.+.+++.|++|++|||+| +|++++.+.
T Consensus 218 ~~p~l~~i~~~l~~~ga~~~~mSGSG--~tvf~l~~~ 252 (269)
T PRK14609 218 KYPEIAEIKEKLYRSGALYAAMSGSG--SSVFGIFKK 252 (269)
T ss_pred cChHHHHHHHHHHhCCCCeEEEeCcc--ceeEEEECC
Confidence 68999999999999999999999996 999999873
No 35
>PTZ00299 homoserine kinase; Provisional
Probab=94.81 E-value=0.093 Score=47.91 Aligned_cols=94 Identities=23% Similarity=0.211 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEe
Q psy7890 65 YLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYE--CSHEALDSLVTCFREAGAYGARLTGAGWCISQDAH 142 (196)
Q Consensus 65 ~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~--vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaL 142 (196)
+....|+...+.+| .++|++.+..+.+.-|+ -|. --.|+++.+.+.++++|++|+-|+|+| =+++++
T Consensus 203 v~n~~~~~~lv~al-----~~~d~~ll~~~~D~lhe----p~R~~~liP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al 271 (336)
T PTZ00299 203 VFNISRTSILVLAL-----STGDLRMLKSCSDKLHE----QQRSDALFPHFRPCVKAAREAGAHYAFLSGAG--PSVCAL 271 (336)
T ss_pred HHhhhHHHHHHHHH-----HhCCHHHHHhchhcccC----cccccccCccHHHHHHHHHHCCCeEEEEEchh--hhheEE
Confidence 34456666678888 88999888653222333 332 136899999999999999999999998 558888
Q ss_pred ehh-----------------h----HHh---ccCCCcEEEeeCCc-cchhhh
Q psy7890 143 LVN-----------------I----MAW---VQSQPRWCISQDAH-LVNIMA 169 (196)
Q Consensus 143 v~~-----------------v----~~~---Y~~~p~~~i~~~~~-g~~i~~ 169 (196)
++. + .+. ++-..++++..+.. |+++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 272 VGGRHGDPLTQPREERKAESVAEAMIKAAEAVGVAGRVIITQPSDQGVHLVG 323 (336)
T ss_pred eccccccccccccchhHHHHHHHHHHHHHHHcCCceEEEEccCCCCCcEEEe
Confidence 751 1 121 23357889998876 888764
No 36
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=94.74 E-value=0.035 Score=48.45 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
..|+++.+.+.++++|++|++|||+| +|++++++
T Consensus 216 ~~p~l~~i~~~l~~~Ga~~~~lSGsG--ptvfal~~ 249 (276)
T PRK14612 216 RHPELQEVLAALRAAGLRGVLMSGSG--STCFGLAE 249 (276)
T ss_pred hChHHHHHHHHHHhCCCCEEEEcCcc--hhhEEEeC
Confidence 78999999999999999999999998 69999987
No 37
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=93.46 E-value=0.079 Score=46.84 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHc-CCceEEEccCCCcceEEEeeh
Q psy7890 109 SHEALDSLVTCFREA-GAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 109 S~pelD~Lv~~A~~~-Ga~GaKltGaGfGGcviaLv~ 144 (196)
..|+++.+.+.+.+. |++|++|||+| .|++++++
T Consensus 229 l~p~l~~i~~~~~~~~Ga~~~~lSGSG--stvf~l~~ 263 (290)
T PRK14608 229 LAPVIGEVLAALRAQPGALLARMSGSG--ATCFALFA 263 (290)
T ss_pred cCcHHHHHHHHHHhcCCCCeeEEeccc--cCeEEEeC
Confidence 579999999999999 99999999998 88999986
No 38
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=93.18 E-value=0.22 Score=43.74 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 85 EQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 85 ~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
.+|++.++.++|.-+..... -.|+++.+.+.+++.|++|+.|+|+|= |+++|++
T Consensus 205 ~~~~~l~~~~~nD~e~~~~~----l~p~l~~v~~~~~~~Galg~~lSGSGp--tv~al~~ 258 (287)
T PRK14616 205 DGDTSVLPAFENDFESAVFD----HYPAVRKVKDDLLEAGSFFASLSGSGS--AVFGLFE 258 (287)
T ss_pred CCHHHHHHHhcCccHHHHHH----hChHHHHHHHHHHhCCCCeEEEecccc--cceEEeC
Confidence 35666666555422222222 358999999999999999999999985 8999987
No 39
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=93.09 E-value=0.57 Score=42.52 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEe
Q psy7890 64 IYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQS-HTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAH 142 (196)
Q Consensus 64 i~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eS-h~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaL 142 (196)
.+.-..|+--++.|| .++|.+....+|+.- |+-.|.-.. |..+++.+.|.++|++|+-++|+| =+++++
T Consensus 190 aV~n~s~~a~lv~al-----~~~~~~l~~~~~~D~ihepyR~~L~---P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al 259 (299)
T COG0083 190 AVFNLSRAALLVAAL-----LEGDPELLRAMMKDVIHEPYRAKLV---PGYAEVREAALEAGALGATLSGAG--PTVFAL 259 (299)
T ss_pred HHHHHHHHHHHHHHH-----HcCCHHHHHHHhccccchhhhhhhC---ccHHHHHHHHhhCCceEEEEecCC--CeEEEE
Confidence 344466778888999 888855444444432 444554433 788889999999999999999998 558888
Q ss_pred ehh--------hHHh-cc---CCCcEEEeeCCccchhh
Q psy7890 143 LVN--------IMAW-VQ---SQPRWCISQDAHLVNIM 168 (196)
Q Consensus 143 v~~--------v~~~-Y~---~~p~~~i~~~~~g~~i~ 168 (196)
++. +.+. |. .....+...+++|+.++
T Consensus 260 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 260 ADESDAEKAAALLEELYEQGIKGRVHILALDSDGARVV 297 (299)
T ss_pred eccchhhHHHHHHHHHHHhCCcceEEEEeecCCcceEe
Confidence 884 1222 21 23555566667776654
No 40
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=92.73 E-value=0.84 Score=41.66 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=63.0
Q ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHh---hc--CCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh-
Q psy7890 72 ERFLSVCRSDISEEQKLQQLGTLMNQSHTSL---AT--KYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN- 145 (196)
Q Consensus 72 ~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sL---r~--l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~- 145 (196)
.+++.|+ ..+|++.||+-|++-|... -+ -....|+.+..+++.+.++ ++||-++ -||=+++++++.
T Consensus 205 m~mmPav-----vE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~ 276 (312)
T COG1907 205 MKMMPAV-----VERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSR 276 (312)
T ss_pred HHHhHHH-----HhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEecccc
Confidence 4788888 8999999999999999876 22 2244677899999999998 6776664 489999999981
Q ss_pred -----------hHHhccCCCcEEEeeCC
Q psy7890 146 -----------IMAWVQSQPRWCISQDA 162 (196)
Q Consensus 146 -----------v~~~Y~~~p~~~i~~~~ 162 (196)
...+|.....++++.|-
T Consensus 277 ~~~~~~~~~~~~~~~~g~~gev~vT~~r 304 (312)
T COG1907 277 EAGSVVRKLIDILLEEGIGGEVFVTKAR 304 (312)
T ss_pred ccchHHHHHHHHHHhcCCceEEEEeccC
Confidence 12334445788888874
No 41
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=87.61 E-value=5.8 Score=35.83 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=57.4
Q ss_pred HHHHH--HHHHHHhcccccchhhHHHHHHHHHHHHHHh----hcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEE
Q psy7890 67 EAYRV--ERFLSVCRSDISEEQKLQQLGTLMNQSHTSL----ATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQD 140 (196)
Q Consensus 67 E~~RV--~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sL----r~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcvi 140 (196)
+..|+ .+.+.++ .++|++.|++.|+.-+..- +.-| -.|.+..+++.+..+ +|+-|+|+| =+++
T Consensus 216 ~~~~~~l~~l~~al-----~~~d~~~~~~~l~d~~~~~f~~~~~~~--r~~li~~~~~~l~~a--~g~~iSGsG--PTv~ 284 (324)
T TIGR00144 216 RICHLILMKMMPAV-----VEGDLDAFGESVNEIQGLGFKKIEREL--QDPLIKRIIDSMISA--PGAGMSSFG--PTVY 284 (324)
T ss_pred HHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHhhcchhhhccc--cCHHHHHHHHHHHhc--cCceecCCC--CeEE
Confidence 33454 3458888 9999999999997644321 1112 356677777766543 788897765 6688
Q ss_pred Eeehh--------hHHhcc---CCCcEEEeeCC-ccchh
Q psy7890 141 AHLVN--------IMAWVQ---SQPRWCISQDA-HLVNI 167 (196)
Q Consensus 141 aLv~~--------v~~~Y~---~~p~~~i~~~~-~g~~i 167 (196)
++++. +.+.|. ....++++.+. .|++|
T Consensus 285 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Ga~v 323 (324)
T TIGR00144 285 AVTDEKPGNIAGAVADIFGPYGVYGRIIVTKARNRGAFI 323 (324)
T ss_pred EEecCchHHHHHHHHHHhhhCCCceEEEEEccCCCCCEe
Confidence 88762 122222 24678888876 47765
No 42
>KOG4644|consensus
Probab=85.23 E-value=3.8 Score=40.67 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHH--cCCceEEEccCCCcceEEEeeh
Q psy7890 71 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-ECSHEALDSLVTCFRE--AGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 71 V~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~-~vS~pelD~Lv~~A~~--~Ga~GaKltGaGfGGcviaLv~ 144 (196)
+.++++-. +++.++.+|+++...|...+-.- .|-.+...+|++.... .|- .+-..|||+||+++.+.+
T Consensus 837 tdecAegf-----~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hge-sgw~AGAGGGGFiYLl~k 907 (948)
T KOG4644|consen 837 TDECAEGF-----EKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHGE-SGWAAGAGGGGFIYLLIK 907 (948)
T ss_pred HHHHHHHH-----hcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhccccccc-cchhccCCCCcEEEEEec
Confidence 44555656 88999999999998887655433 3455566777766554 342 235789999999998876
No 43
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=81.02 E-value=2.1 Score=37.80 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHH-cCCceEEEccCCCcceEEEeeh
Q psy7890 109 SHEALDSLVTCFRE-AGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 109 S~pelD~Lv~~A~~-~Ga~GaKltGaGfGGcviaLv~ 144 (196)
-+|+++.+.+.+.+ .|+++++|||+|= |++++++
T Consensus 221 l~P~l~~~~~~l~~~~ga~~a~mSGSGs--Tvf~l~~ 255 (283)
T PRK14610 221 LVPEIEEILFVLESLEGCILSRMSGSGA--TCFALFE 255 (283)
T ss_pred hChHHHHHHHHHHhcCCCceEEEeCccc--ceeEEeC
Confidence 47999999997766 5889999999985 8999986
No 44
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=71.90 E-value=4.7 Score=35.18 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 69 YRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 69 ~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
.+......++ .++|++.++..|. ..+.+-+.-..|++..+.+.....| +|+.|+|+| -+++++++
T Consensus 189 ~~~~~l~~~l-----~~~~~~~~~~~~~---n~l~~~~~~~~P~l~~~~~~l~~~~-~~~~~SGSG--~tvf~l~~ 253 (275)
T PRK14611 189 EDLNIIISLL-----REGEEKKIEEVIE---NTLGEIALELYPEIKEVYRFLEYLG-YKPFVSGSG--SSVYVFGK 253 (275)
T ss_pred chHHHHHHHH-----HcCCHHHHHHhcC---CcccHHHHHHCHHHHHHHHHHHhCC-CCEEEeCcc--ccceeEeC
Confidence 4555667777 7788877765532 2233222235688888888655556 488999987 66888887
No 45
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=60.05 E-value=5.6 Score=36.03 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
..|++........+.|+.+++|||.| -|++++++.
T Consensus 224 ~~p~v~~~~~~l~~~ga~~~~mSGSG--stvF~l~~~ 258 (289)
T COG1947 224 LYPEVKEALSELLEYGALPARMSGSG--STVFALFDT 258 (289)
T ss_pred hChHHHHHHHHHhhcccccceEecCC--CcEEEEeCC
Confidence 56788886666666788899999987 779999984
No 46
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=42.60 E-value=35 Score=29.92 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
-.|+++.+.+.+.+.|+ +.|||+| -|++++++
T Consensus 216 ~~P~~~~~~~~l~~~ga--~~mSGSG--~tvF~l~~ 247 (271)
T PRK00343 216 RYPEVAQALSWLLEYAP--SRMTGTG--ACVFAEFD 247 (271)
T ss_pred hChHHHHHHHHHHhCCC--eEEeccc--cceEEEcC
Confidence 46889999888888897 8899987 66888887
No 47
>PRK05905 hypothetical protein; Provisional
Probab=41.05 E-value=28 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.099 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCC
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAG 134 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaG 134 (196)
-+|++..+.+...+.|+ .++|||.|
T Consensus 222 ~~P~i~~~~~~l~~~g~-~a~MSGSG 246 (258)
T PRK05905 222 LYPNLLYKYNELLNDGF-YTILSGAG 246 (258)
T ss_pred hChHHHHHHHHHHhCCC-CEEEeCcc
Confidence 57899998888888886 89999987
No 48
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=41.05 E-value=13 Score=16.58 Aligned_cols=6 Identities=50% Similarity=1.420 Sum_probs=4.4
Q ss_pred ccCCCc
Q psy7890 131 TGAGWC 136 (196)
Q Consensus 131 tGaGfG 136 (196)
+|||||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 577776
No 49
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=72 Score=28.41 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHH-cCCceEEEccCCCcceEEEeeh
Q psy7890 87 KLQQLGTLMNQSHTSLATK--YECSHEALDSLVTCFRE-AGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 87 D~~~fG~Lm~eSh~sLr~l--~~vS~pelD~Lv~~A~~-~Ga~GaKltGaGfGGcviaLv~ 144 (196)
.+.+-|++..+-...+... ..+|+.|||.+++.-.. .|++-+....-||.+.+-+-+.
T Consensus 13 k~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvN 73 (255)
T COG0024 13 KMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVN 73 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehh
Confidence 4555666666665444442 35799999999988777 6999998888888888776665
No 50
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=38.13 E-value=1e+02 Score=23.85 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Q psy7890 55 WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQ 97 (196)
Q Consensus 55 ~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~e 97 (196)
+..|...+|++.-|+|..++...|+. +..++...|+-+.+
T Consensus 53 e~~Y~Qs~~Yv~~NerLqqa~~~Lkk---k~e~L~~age~Le~ 92 (97)
T PF15136_consen 53 EQQYQQSRTYVAMNERLQQARDQLKK---KCEELRQAGEELER 92 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 67899999999999999999999843 44566666665544
No 51
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=37.52 E-value=44 Score=30.06 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHcCC-ce--EEEccCCCcceEEEeeh
Q psy7890 109 SHEALDSLVTCFREAGA-YG--ARLTGAGWCISQDAHLV 144 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga-~G--aKltGaGfGGcviaLv~ 144 (196)
-.|++..+.+...+.|+ .| ++|||.| -|++++.+
T Consensus 205 ~~p~i~~~~~~l~~~~~~~~~~~~MSGSG--st~F~l~~ 241 (288)
T PRK00650 205 LRLDLKEKKHWLESLWAELPVHVGLTGSG--ATLFVRYP 241 (288)
T ss_pred hChHHHHHHHHHHhccccCCCeEEEeCcc--cCEEEEeC
Confidence 47889999888888643 24 7899987 67888887
No 52
>PRK00068 hypothetical protein; Validated
Probab=27.85 E-value=1.4e+02 Score=31.63 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=49.7
Q ss_pred ecceeecccccCCcceeccchhhhhhcCchhhhhcc--------CCC-----------h-H---HHHHHHHHHHHHHHHH
Q psy7890 15 LSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFG--------SGG-----------W-W---FESKSSHEIYLEAYRV 71 (196)
Q Consensus 15 ~~~~~~~~~~fg~~~~~~~~~e~~Lr~~~~~~l~~~--------~~~-----------l-~---~~~~Ra~Hi~~E~~RV 71 (196)
|..|+| -||.++-.+.+.++.|.++--...... .+. - . .........+.|....
T Consensus 860 L~rViv---s~g~~v~~~~TL~eAL~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a 936 (970)
T PRK00068 860 LKRVLV---SYNDKVGYAPTIREALTQLFGDGAGATATGEAPGETKTPPDPPPTAAPPPPTGPVTLSPAKAAALKEAQDA 936 (970)
T ss_pred eEEEEE---EECCEeEeccCHHHHHHHHhCCCcccccCCcccccCCCCccccCCCCCCCCCCCCCCcccHHHHHHHHHHH
Confidence 445555 489999999999999987632111100 000 0 0 0000122234444433
Q ss_pred -HHHHHHhcccccchhhHHHHHHHHHHHHHHhhcC
Q psy7890 72 -ERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATK 105 (196)
Q Consensus 72 -~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l 105 (196)
.++.+|+ ++|||.++|+.+.+=...|+..
T Consensus 937 ~~~a~~Al-----k~GDw~~yG~a~~~L~~al~~~ 966 (970)
T PRK00068 937 YNKAIEAQ-----KSGDFAEYGEALKELDDALNKY 966 (970)
T ss_pred HHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHH
Confidence 3677888 9999999999998887776654
No 53
>KOG1537|consensus
Probab=26.52 E-value=37 Score=31.23 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=64.4
Q ss_pred cccCCcceeccchhhhhhc-Cchhhhhcc--CCChHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHH-HHHHH-
Q psy7890 23 LDFGSGVKFSFEVETKLSS-VVVNALDFG--SGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLG-TLMNQ- 97 (196)
Q Consensus 23 ~~fg~~~~~~~~~e~~Lr~-~~~~~l~~~--~~~l~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG-~Lm~e- 97 (196)
++.|+..++.-+.|-+.=- +|.=++.-. +.-+...+-+..|+|. .+|...-..|+. +..|-..++ .+|..
T Consensus 198 ~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~R~vLPt~yp~~d~V~N-lqrlA~LttAl~----~~p~n~~L~y~~m~Dk 272 (355)
T KOG1537|consen 198 LDLGKPLRFPWDKDLKFILVIPDFELPTKKMRAVLPTEYPMVDHVWN-LQRLAALTTALL----EGPDNVMLGYALMSDK 272 (355)
T ss_pred ccccccccCCCCccceEEEEeccccccchhhhhhcCccccceeeeec-HHHHHHHHHHHh----cCCCchhhhhhhhhcc
Confidence 4677777777776654422 222111111 1222667778888887 445555555552 221333333 33332
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHc---CCceEEEccCCCcceEEEeeh
Q psy7890 98 SHTSLATKYECSHEALDSLVTCFREA---GAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 98 Sh~sLr~l~~vS~pelD~Lv~~A~~~---Ga~GaKltGaGfGGcviaLv~ 144 (196)
-|+-.|.- =-|-+..+...+... |.+|.-++||| =+++|+..
T Consensus 273 vhqPyRa~---LIPGl~~il~~~~p~t~pGl~GiclSGAG--PT~lAlat 317 (355)
T KOG1537|consen 273 VHQPYRAP---LIPGLEAILKAALPATYPGLFGICLSGAG--PTALALAT 317 (355)
T ss_pred ccCccccc---cCccHHHHHHhhCcccCCceeeEEecCCC--CeeEEEec
Confidence 23333332 236688888888885 99999999987 56888887
No 54
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.53 E-value=1.2e+02 Score=19.52 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcC
Q psy7890 85 EQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAG 124 (196)
Q Consensus 85 ~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~G 124 (196)
..++.+|...+.........+.. |...+.++++|.+.|
T Consensus 3 ~~~l~~Fl~~~~~d~~l~~~l~~--~~~~~e~~~lA~~~G 40 (49)
T PF07862_consen 3 IESLKAFLEKVKSDPELREQLKA--CQNPEEVVALAREAG 40 (49)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHh--cCCHHHHHHHHHHcC
Confidence 34567777777655544444433 334578888998887
No 55
>KOG2530|consensus
Probab=24.90 E-value=31 Score=33.44 Aligned_cols=56 Identities=16% Similarity=0.009 Sum_probs=39.9
Q ss_pred CCceEEEccCCCcceEEEeehhhHHhccCCCcEEEeeCCccchhhhhhhcCCcchhhHHHH
Q psy7890 124 GAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLL 184 (196)
Q Consensus 124 Ga~GaKltGaGfGGcviaLv~~v~~~Y~~~p~~~i~~~~~g~~i~~~~~~~p~~~~~~~~~ 184 (196)
|.--.-=.-.||||..-.++..++.+|.+.+.+ .++++-+.+. |++|.=+||++.+
T Consensus 206 GFq~l~Did~GfgG~as~~le~l~DEys~~~v~---tw~~~~~p~s--~~~s~k~ls~~~~ 261 (483)
T KOG2530|consen 206 GFQLLSDIDDGFGGFASKLLEELQDEYSKKAVF---TWGHNPRPFS--QDFSMKRLSNKWL 261 (483)
T ss_pred ceEEEEecCCCchhHHHHHHHHHHHhhcCCcee---ccccCCCCCC--cchhhhhhHHHHH
Confidence 433333345799999888888999999765432 3455555555 9999999999765
No 56
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=24.55 E-value=4.3e+02 Score=23.73 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=40.0
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCC-------CHHHH---HHHHHHHHcCCceEEEccCCCcceE
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECS-------HEALD---SLVTCFREAGAYGARLTGAGWCISQ 139 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS-------~pelD---~Lv~~A~~~Ga~GaKltGaGfGGcv 139 (196)
++.++.+|+ .++|++.||++...+-..|....--+ +|+.- .++...++.|.-.+=..-||=-=++
T Consensus 212 ~l~~~~~ai-----~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAGpNv~v 286 (305)
T TIGR01240 212 DFEVXRKAI-----KTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAGPNVKV 286 (305)
T ss_pred HHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCCCCEEE
Confidence 477889999 99999999999888766655432212 23322 3344444455444455555544333
Q ss_pred E
Q psy7890 140 D 140 (196)
Q Consensus 140 i 140 (196)
+
T Consensus 287 l 287 (305)
T TIGR01240 287 L 287 (305)
T ss_pred E
Confidence 3
No 57
>smart00594 UAS UAS domain.
Probab=23.42 E-value=68 Score=24.33 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=36.7
Q ss_pred hhHHhccC--CCcEEEeeCCccchhhhhhhcCCcchhhHHHHhcc
Q psy7890 145 NIMAWVQS--QPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENL 187 (196)
Q Consensus 145 ~v~~~Y~~--~p~~~i~~~~~g~~i~~~~~~~p~~~~~~~~~~~~ 187 (196)
.+...|+- -|.+.+..|..|.+.+.++..+||+.-+..+++.|
T Consensus 77 ~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 77 RVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 46667754 49999999999988889999999999999998876
No 58
>KOG4519|consensus
Probab=21.86 E-value=4.1e+02 Score=25.43 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHH-cCCceEEEccCCCcceEEEeeh-------hhHHhccCC--CcEEEeeCCccchh
Q psy7890 108 CSHEALDSLVTCFRE-AGAYGARLTGAGWCISQDAHLV-------NIMAWVQSQ--PRWCISQDAHLVNI 167 (196)
Q Consensus 108 vS~pelD~Lv~~A~~-~Ga~GaKltGaGfGGcviaLv~-------~v~~~Y~~~--p~~~i~~~~~g~~i 167 (196)
+-.|.+-.|++-.+. .|++++-+-|||+=.++.++.. .+.+..+++ --.-+.++-+|+.+
T Consensus 380 IEP~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~dvd~~~~~~~~w~~~~V~~ldV~~a~~Gv~~ 449 (459)
T KOG4519|consen 380 IEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSHNVLALDVREAPHGVCL 449 (459)
T ss_pred CCchhhhhHhhhhhcccceEEecccCCCCcceEEEEeecchhHHHHHHhhhcccCeeEEeeeeCCCccee
Confidence 344556788888888 5999999999999888888765 233333332 22334555566654
No 59
>PRK07758 hypothetical protein; Provisional
Probab=20.18 E-value=1.2e+02 Score=23.40 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=35.4
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcC
Q psy7890 73 RFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAG 124 (196)
Q Consensus 73 ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~G 124 (196)
.+..+| ....+..+++|+..+...|-++-.+..-.+++|.+...+.|
T Consensus 45 RA~N~L-----k~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkekL~E~G 91 (95)
T PRK07758 45 PARRAL-----EHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEESG 91 (95)
T ss_pred HHHHHH-----HHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHcC
Confidence 455666 67789999999999988877766556555888877777765
No 60
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=20.11 E-value=84 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy7890 84 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCF 120 (196)
Q Consensus 84 ~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A 120 (196)
....+..+++|+..+...|.+...++...++.+.+..
T Consensus 28 ~~~~I~tv~dL~~~s~~~L~~i~n~G~ksl~EI~~~L 64 (66)
T PF03118_consen 28 KRAGIHTVGDLVKYSEEDLLKIKNFGKKSLEEIKEKL 64 (66)
T ss_dssp HCTT--BHHHHHCS-HHHHHTSTTSHHHHHHHHHHHH
T ss_pred HHhCCcCHHHHHhCCHHHHHhCCCCCHhHHHHHHHHH
Confidence 6678999999999999888887766655577665543
Done!