Query psy7890
Match_columns 196
No_of_seqs 176 out of 1341
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 21:25:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 99.9 5.1E-27 1.7E-31 220.2 10.7 114 56-169 381-519 (520)
2 2a2c_A N-acetylgalactosamine k 99.9 3E-23 1E-27 190.8 12.3 108 56-168 347-475 (478)
3 1wuu_A Galactokinase; galactos 99.8 1.8E-20 6.3E-25 167.2 13.8 126 38-168 261-397 (399)
4 1pie_A Galactokinase; galactos 99.8 5.2E-20 1.8E-24 165.5 14.1 126 39-169 276-417 (419)
5 2cz9_A Probable galactokinase; 99.8 9.5E-19 3.2E-23 151.5 14.3 108 55-167 230-350 (350)
6 3gon_A Phosphomevalonate kinas 99.7 3.8E-17 1.3E-21 139.5 8.6 76 63-144 228-304 (335)
7 3k85_A D-glycero-D-manno-hepto 99.7 8.3E-18 2.9E-22 149.2 3.7 111 57-176 227-345 (357)
8 1kvk_A MK, mevalonate kinase; 99.7 1.5E-16 5.3E-21 141.4 11.1 108 55-169 262-381 (395)
9 3k17_A LIN0012 protein; protei 99.5 1.7E-14 6E-19 128.5 8.9 79 60-144 243-327 (365)
10 2hfs_A Mevalonate kinase, puta 99.4 8E-13 2.7E-17 113.9 11.8 92 70-167 229-332 (332)
11 2pg9_A Phosphomevalonate kinas 99.4 5.2E-13 1.8E-17 117.4 7.9 75 64-144 230-306 (337)
12 2x7i_A Mevalonate kinase; tran 99.4 9.2E-13 3.2E-17 112.4 8.9 71 69-145 212-282 (308)
13 2oi2_A Mevalonate kinase; enzy 99.4 3.4E-12 1.2E-16 107.5 10.9 70 70-145 199-268 (292)
14 4hac_A Mevalonate kinase; GHMP 99.3 3.5E-12 1.2E-16 111.2 10.3 91 71-167 223-320 (321)
15 1kkh_A Mevalonate kinase; mixe 99.2 1E-10 3.6E-15 100.0 9.8 65 74-145 229-293 (317)
16 1h72_C HK, homoserine kinase; 99.0 5.3E-10 1.8E-14 94.6 7.1 97 61-168 192-296 (296)
17 2gs8_A Mevalonate pyrophosphat 98.7 8E-08 2.7E-12 82.7 10.3 93 68-167 210-317 (317)
18 3hul_A HSK, HK, homoserine kin 98.4 1E-06 3.4E-11 76.2 9.0 94 65-168 185-289 (298)
19 3qt5_A Mevalonate diphosphate 98.3 3.4E-06 1.2E-10 74.1 10.4 91 70-167 221-330 (332)
20 3pyf_A 4-diphosphocytidyl-2-C- 97.9 4.4E-06 1.5E-10 72.6 2.1 90 70-169 202-301 (306)
21 1uek_A 4-(cytidine 5'-diphosph 97.3 0.00035 1.2E-08 58.6 6.3 54 109-164 209-268 (275)
22 2v8p_A 4-diphosphocytidyl-2-C- 96.9 5.6E-05 1.9E-09 63.7 -2.4 61 70-144 188-250 (271)
23 1fi4_A Mevalonate 5-diphosphat 96.7 0.0026 8.8E-08 57.4 6.8 70 68-144 251-332 (416)
24 3lto_A Mevalonate diphosphate 95.9 0.019 6.5E-07 50.7 7.3 70 68-142 213-293 (323)
25 2hke_A Diphosphomevalonate dec 95.0 0.12 4.1E-06 45.7 9.5 70 68-144 222-303 (380)
26 3f0n_A Mevalonate pyrophosphat 94.8 0.11 3.8E-06 47.6 8.9 76 62-142 240-329 (414)
27 2ww4_A 4-diphosphocytidyl-2C-m 94.3 0.067 2.3E-06 45.3 5.8 32 109-144 218-249 (283)
28 4e17_B Catenin alpha-1; four h 41.7 31 0.001 21.7 3.5 20 59-78 12-31 (40)
29 1xn7_A Hypothetical protein YH 33.9 35 0.0012 23.7 3.2 37 102-139 22-62 (78)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.94 E-value=5.1e-27 Score=220.21 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccC
Q psy7890 56 FESKSSHEIYLEAYRVERFLSVCRSD--ISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGA 133 (196)
Q Consensus 56 ~~~~Ra~Hi~~E~~RV~ea~~AL~~~--~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGa 133 (196)
.+++|++|+++||+||.++++||++. ....+|++.||+||++||.+|+++|++|||++|.|+++|++.|++|+|||||
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTGa 460 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGA 460 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecC
Confidence 37899999999999999999999321 0012379999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEee---h---------hhHHhccC-----------CCcEEEeeCCccchhhh
Q psy7890 134 GWCISQDAHL---V---------NIMAWVQS-----------QPRWCISQDAHLVNIMA 169 (196)
Q Consensus 134 GfGGcviaLv---~---------~v~~~Y~~-----------~p~~~i~~~~~g~~i~~ 169 (196)
|||||+++|+ + .+.+.|.. .|.+|+|+|+.|+.|..
T Consensus 461 G~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 461 GWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp CSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred CCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEecCCCceEEee
Confidence 9999999999 6 24555621 37899999999998754
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.89 E-value=3e-23 Score=190.83 Aligned_cols=108 Identities=35% Similarity=0.485 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccch---hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEcc
Q psy7890 56 FESKSSHEIYLEAYRVERFLSVCRSDISEE---QKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTG 132 (196)
Q Consensus 56 ~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~---gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltG 132 (196)
..++|+.|+++|+.|+.+++++| .+ +|++.||++|++||.+++++|++|+|++|+++++|+++|++|+||||
T Consensus 347 ~~~~ra~h~~~e~~rv~~~~~aL-----~~~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltG 421 (478)
T 2a2c_A 347 KLYQRAKHVYSEAARVLQFKKIC-----EEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTG 421 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-----HHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEecc
Confidence 46789999999999999999999 77 99999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeehh---------hHHhcc---------CCCcEEEeeCCccchhh
Q psy7890 133 AGWCISQDAHLVN---------IMAWVQ---------SQPRWCISQDAHLVNIM 168 (196)
Q Consensus 133 aGfGGcviaLv~~---------v~~~Y~---------~~p~~~i~~~~~g~~i~ 168 (196)
||||||+++|+++ +.+.|. ..|.+|+++|++|++++
T Consensus 422 AG~GG~viaLv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 422 AGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp TCSSSEEEEEEEGGGHHHHHHHHHHHHHC---------CCSEEEECCBCCCEEE
T ss_pred CCCccEEEEEEcHHHHHHHHHHHHHHHHHhcCccccCCCCcEEEEcCCCCeEee
Confidence 9999999999982 344552 13799999999999876
No 3
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.84 E-value=1.8e-20 Score=167.17 Aligned_cols=126 Identities=25% Similarity=0.304 Sum_probs=109.1
Q ss_pred hhhcCchhhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy7890 38 KLSSVVVNALDFGSGGW-WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 116 (196)
Q Consensus 38 ~Lr~~~~~~l~~~~~~l-~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~L 116 (196)
.+++++...+......+ +..++|+.|.+.|+.|+.+++++| .++|++.||++|+++|.++++.+.+++|++|.+
T Consensus 261 ~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al-----~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l 335 (399)
T 1wuu_A 261 SLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDDYEVSCPELDQL 335 (399)
T ss_dssp STTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34555555554444445 667899999999999999999999 999999999999999999999888899999999
Q ss_pred HHHHHH-cCCceEEEccCCCcceEEEeehh---------hHHhccCCCcEEEeeCCccchhh
Q psy7890 117 VTCFRE-AGAYGARLTGAGWCISQDAHLVN---------IMAWVQSQPRWCISQDAHLVNIM 168 (196)
Q Consensus 117 v~~A~~-~Ga~GaKltGaGfGGcviaLv~~---------v~~~Y~~~p~~~i~~~~~g~~i~ 168 (196)
++.+++ .|++|+||||||||||+++|++. +.+.|+..+.+|++.|++|++++
T Consensus 336 ~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 336 VEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGGTATFYLSQAADGAKVL 397 (399)
T ss_dssp HHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHCSSCCEEEEECCCCCSEEC
T ss_pred HHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHhCCCCcEEEEcCCCCeeec
Confidence 999999 79999999999999999999982 34557667999999999999876
No 4
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.83 E-value=5.2e-20 Score=165.46 Aligned_cols=126 Identities=22% Similarity=0.247 Sum_probs=105.5
Q ss_pred hhcCchhhhhccCCCh--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy7890 39 LSSVVVNALDFGSGGW--WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSL 116 (196)
Q Consensus 39 Lr~~~~~~l~~~~~~l--~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~L 116 (196)
+++.+...++.....+ +..++|+.|++.|+.|+.++.++| .++|++.||++|+++|.++++.+.+++|++|.+
T Consensus 276 l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al-----~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l 350 (419)
T 1pie_A 276 LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAF-----VAGNLTKFGELLNASHASLKDDYEVTGLELDTL 350 (419)
T ss_dssp GGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3445444443333333 347789999999999999999999 999999999999999999999988999999999
Q ss_pred HHHHHHc-CCceEEEccCCCcceEEEeehh---------hHHhcc----CCCcEEEeeCCccchhhh
Q psy7890 117 VTCFREA-GAYGARLTGAGWCISQDAHLVN---------IMAWVQ----SQPRWCISQDAHLVNIMA 169 (196)
Q Consensus 117 v~~A~~~-Ga~GaKltGaGfGGcviaLv~~---------v~~~Y~----~~p~~~i~~~~~g~~i~~ 169 (196)
++.+++. |++|+||||||||||+++|++. +.+.|. ..|.+|++.|++|+++++
T Consensus 351 ~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~~Ga~v~~ 417 (419)
T 1pie_A 351 AETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVGYPASFYVAQIGSGSTKLD 417 (419)
T ss_dssp HHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHSSCCEEEECCBCCCSBCC-
T ss_pred HHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHhcCCCCeEEEEcCCCCeeecc
Confidence 9999997 9999999999999999999972 234453 358999999999998864
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.79 E-value=9.5e-19 Score=151.51 Aligned_cols=108 Identities=31% Similarity=0.335 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCC
Q psy7890 55 WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG 134 (196)
Q Consensus 55 ~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaG 134 (196)
+..++|+.|.+.|+.|+.++.++| .++|++.||++|+++|.+|++.+.+++|++|.+++.+++.|++|+||||+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~al-----~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG 304 (350)
T 2cz9_A 230 PLHRKFFGYIVRENARVLEVRDAL-----KEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAG 304 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 345678999999999999999999 999999999999999999999888899999999999999999999999999
Q ss_pred CcceEEEeehh---------hHHhc----cCCCcEEEeeCCccchh
Q psy7890 135 WCISQDAHLVN---------IMAWV----QSQPRWCISQDAHLVNI 167 (196)
Q Consensus 135 fGGcviaLv~~---------v~~~Y----~~~p~~~i~~~~~g~~i 167 (196)
||||+++|++. +.+.| +..+.+|+++|++|+++
T Consensus 305 ~G~~v~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 305 FGGSAIALVDKEDAETIGEEILREYLKRFPWKARHFIVEPSDGVGI 350 (350)
T ss_dssp SSSEEEEEEEGGGHHHHHHHHHHHHHHHCCSCCEEEEECEECCSBC
T ss_pred CceEEEEEEchhhHHHHHHHHHHHHHHhhCCCCcEEEecCCCCCCC
Confidence 99999999972 23334 34699999999999864
No 6
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.69 E-value=3.8e-17 Score=139.55 Aligned_cols=76 Identities=16% Similarity=0.031 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEE
Q psy7890 63 EIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-ECSHEALDSLVTCFREAGAYGARLTGAGWCISQDA 141 (196)
Q Consensus 63 Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~-~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcvia 141 (196)
++...+.++.++.++| +++|++.||++|+++|.+|++++ ++|+|++|.|+++|++.|+ |||+||||||||++|
T Consensus 228 ~~~~~~~~~~~~~~aL-----~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~akltGAG~Ggc~ia 301 (335)
T 3gon_A 228 FLTSSKETVVSLVEAL-----EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIA 301 (335)
T ss_dssp HHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEECTTCSSSEEEE
T ss_pred HHHHHHHHHHHHHHHH-----HhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEccccchheEEE
Confidence 3344456889999999 99999999999999999999965 7899999999999999985 899999999999999
Q ss_pred eeh
Q psy7890 142 HLV 144 (196)
Q Consensus 142 Lv~ 144 (196)
|++
T Consensus 302 l~~ 304 (335)
T 3gon_A 302 LSF 304 (335)
T ss_dssp EEC
T ss_pred EEC
Confidence 997
No 7
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=8.3e-18 Score=149.24 Aligned_cols=111 Identities=8% Similarity=-0.047 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHcCCceEEEccCCC
Q psy7890 57 ESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATK-YECSHEALDSLVTCFREAGAYGARLTGAGW 135 (196)
Q Consensus 57 ~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l-~~vS~pelD~Lv~~A~~~Ga~GaKltGaGf 135 (196)
.++|+.|.+.| |+.++++|| .++|++.||++|+++|.+++++ +.+|+|++|.+++.|++.|++|+||||||+
T Consensus 227 ~~~~~~~~i~~--~~~~~~~aL-----~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~ 299 (357)
T 3k85_A 227 TAIEAMHKIKQ--SAIDTKLAL-----LKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGG 299 (357)
T ss_dssp CTTHHHHHHHH--HHHHHHHHH-----TTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC-
T ss_pred HHHHHHHHHHH--HHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCC
Confidence 45678888876 889999999 9999999999999999999998 899999999999999999999999999999
Q ss_pred cceEEEeehhh-HHhc----cC-CCcEEEeeC-CccchhhhhhhcCCc
Q psy7890 136 CISQDAHLVNI-MAWV----QS-QPRWCISQD-AHLVNIMAWVQSQPR 176 (196)
Q Consensus 136 GGcviaLv~~v-~~~Y----~~-~p~~~i~~~-~~g~~i~~~~~~~p~ 176 (196)
|||+++|+++- .+++ .. ....+.+.. ..|++| |-..+|+
T Consensus 300 gG~vial~~~~~~~~~~~~l~~~g~~~~~~~~~~~G~~v--~~~~~~~ 345 (357)
T 3k85_A 300 GGFIMFVVEPTRKEEVVRALNNLNGFVMPFQFIDDGAHG--WKIYSTD 345 (357)
T ss_dssp --CEEEECCHHHHHHHHHHHHTSSSCBCCCCBCCCCCEE--EECCC--
T ss_pred CCEEEEEecHHHHHHHHHHHHHCCCeEEEeEEcCCceEE--EEecCch
Confidence 99999999831 1122 11 234444544 368887 5555554
No 8
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.68 E-value=1.5e-16 Score=141.41 Aligned_cols=108 Identities=21% Similarity=0.101 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccC
Q psy7890 55 WFESKSSHEIYLEAYRVERF-LSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGA 133 (196)
Q Consensus 55 ~~~~~Ra~Hi~~E~~RV~ea-~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGa 133 (196)
+..++|+.|++.|+.|+..+ +++| .++|++.||++|+++|.+|++ +.+++|++|.+++.+++.|+ |+|||||
T Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~al-----~~~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGa 334 (395)
T 1kvk_A 262 APLLTSIDAISLECERVLGEMAAAP-----VPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGA 334 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-----cHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccC
Confidence 34678999999999999887 7888 899999999999999999998 78899999999999999999 9999999
Q ss_pred CCcceEEEeehh---------hHHhccC-CCcEEEee-CCccchhhh
Q psy7890 134 GWCISQDAHLVN---------IMAWVQS-QPRWCISQ-DAHLVNIMA 169 (196)
Q Consensus 134 GfGGcviaLv~~---------v~~~Y~~-~p~~~i~~-~~~g~~i~~ 169 (196)
|||||+++|+++ +.+.|.. ...+|+++ ++.|++|..
T Consensus 335 G~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 335 GGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMHS 381 (395)
T ss_dssp CSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEEC
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEEEecCCCcEEEEe
Confidence 999999999982 2344532 23578888 789998864
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.53 E-value=1.7e-14 Score=128.53 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=72.1
Q ss_pred HHHHHHHHHH-HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHHcCCceEEEccC
Q psy7890 60 SSHEIYLEAY-RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-----ECSHEALDSLVTCFREAGAYGARLTGA 133 (196)
Q Consensus 60 Ra~Hi~~E~~-RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~-----~vS~pelD~Lv~~A~~~Ga~GaKltGa 133 (196)
+..|++.|+. ++.+++++| .++|++.||++|+++|.+|+++. .+++|++|.+++.|++.|++ +|||||
T Consensus 243 ~~~~~~~~~~~~~~~~~~aL-----~~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~~Ga~-ak~sGA 316 (365)
T 3k17_A 243 NYQHFLTRNNEIMKQIIQAF-----HTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGGA-GKSSGS 316 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTSE-EEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHhcCCE-EEecCC
Confidence 4678999965 679999999 99999999999999999999843 24999999999999999988 999999
Q ss_pred CCcceEEEeeh
Q psy7890 134 GWCISQDAHLV 144 (196)
Q Consensus 134 GfGGcviaLv~ 144 (196)
|||||+++|++
T Consensus 317 GgGg~vial~~ 327 (365)
T 3k17_A 317 GGGDCGIAFSK 327 (365)
T ss_dssp CSSSEEEEEES
T ss_pred CCCCEEEEEEC
Confidence 99999999998
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.43 E-value=8e-13 Score=113.92 Aligned_cols=92 Identities=28% Similarity=0.331 Sum_probs=73.6
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh----
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN---- 145 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~---- 145 (196)
++.++.++| .++|++.|+++|+++|..++.. .+++|+++.+++.+++.|++|+||+|+|+|||+++|++.
T Consensus 229 ~~~~~~~al-----~~~d~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a 302 (332)
T 2hfs_A 229 IVSQAREAL-----QKGDLQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQR 302 (332)
T ss_dssp HHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHH
T ss_pred HHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccH
Confidence 456788999 8999999999999999999985 579999999999999999999999999999999999972
Q ss_pred ------hHHhccCC-CcE-EEeeCCccchh
Q psy7890 146 ------IMAWVQSQ-PRW-CISQDAHLVNI 167 (196)
Q Consensus 146 ------v~~~Y~~~-p~~-~i~~~~~g~~i 167 (196)
+.+.|... ..| +.+.|++|+++
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 303 DAIVKGLKAKCPEAKFIWRYTVQPSAASNL 332 (332)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEECCSCC---
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCCCC
Confidence 12234332 233 56678888764
No 11
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.39 E-value=5.2e-13 Score=117.38 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=68.1
Q ss_pred HHHH-HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEE
Q psy7890 64 IYLE-AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-ECSHEALDSLVTCFREAGAYGARLTGAGWCISQDA 141 (196)
Q Consensus 64 i~~E-~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~-~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcvia 141 (196)
++.+ +.++.+++++| .++|++.||++|+++|.++++++ .+++|++|.+++.|++.|++ +||||||||||+++
T Consensus 230 ~~~~~~~~~~~~~~aL-----~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg~via 303 (337)
T 2pg9_A 230 FLTSSKETVVSLVEAL-----EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGGDCGIA 303 (337)
T ss_dssp HHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSSSEEEE
T ss_pred HHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCccEEEE
Confidence 3444 55778899999 99999999999999999999887 47999999999999999999 99999999999999
Q ss_pred eeh
Q psy7890 142 HLV 144 (196)
Q Consensus 142 Lv~ 144 (196)
|++
T Consensus 304 l~~ 306 (337)
T 2pg9_A 304 LSF 306 (337)
T ss_dssp EEC
T ss_pred EEC
Confidence 997
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.38 E-value=9.2e-13 Score=112.43 Aligned_cols=71 Identities=30% Similarity=0.358 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 69 YRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 69 ~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
.++.++.++| .++|++.||++|+++|.++++. .+++|++|.+++.+++.|++|+||+|+|+|||+++|++.
T Consensus 212 ~~~~~~~~al-----~~~d~~~l~~~~~~~~~~~~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~ 282 (308)
T 2x7i_A 212 KLVLRASDVI-----EHHKFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKD 282 (308)
T ss_dssp HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESS
T ss_pred HHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCC
Confidence 4788899999 8999999999999999999984 679999999999999999999999999999999999983
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.36 E-value=3.4e-12 Score=107.51 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=64.3
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
.+.++.++| .++|++.|+++|+++|..+++. .+++|++|.+++.+++.|++|+||+|+|+|||++++++.
T Consensus 199 ~~~~~~~al-----~~~d~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~ 268 (292)
T 2oi2_A 199 LTQQAEIAI-----SQKDAEGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTN 268 (292)
T ss_dssp HHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESC
T ss_pred HHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecC
Confidence 356788899 8899999999999999999985 679999999999999999999999999999999999973
No 14
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.34 E-value=3.5e-12 Score=111.24 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=72.0
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh-----
Q psy7890 71 VERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN----- 145 (196)
Q Consensus 71 V~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~----- 145 (196)
+.++.++| .++|++.||++|+++|..+++ +.+++|++|.+++.|++.|++|+||||+|+|||+++|+++
T Consensus 223 ~~~~~~al-----~~~d~~~lg~~~~~~~~~~~~-~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~ 296 (321)
T 4hac_A 223 SRIGEQLV-----LSGDYASIGRLMNVNQGLLDA-LGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQ 296 (321)
T ss_dssp HHHHHHHH-----HHTCHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHH
T ss_pred HHHHHHHH-----HhCCHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHH
Confidence 45788899 899999999999999976655 5579999999999999999999999999999999999952
Q ss_pred hHHhccC-CCcEEEeeCC-ccchh
Q psy7890 146 IMAWVQS-QPRWCISQDA-HLVNI 167 (196)
Q Consensus 146 v~~~Y~~-~p~~~i~~~~-~g~~i 167 (196)
+.+..+. ...+|.+++. .|++|
T Consensus 297 ~~~~l~~~g~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 297 VAEAVAGAGGKVTITKPTEQGLKV 320 (321)
T ss_dssp HHHHHHHTTCEEEEECBCSCSSEE
T ss_pred HHHHHHhCCCeEEEEEECCCceec
Confidence 1111111 2567777664 46543
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.16 E-value=1e-10 Score=100.03 Aligned_cols=65 Identities=26% Similarity=0.297 Sum_probs=58.5
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh
Q psy7890 74 FLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN 145 (196)
Q Consensus 74 a~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~ 145 (196)
..+++ ..+|++.|+++|+.+|..+++. .+++|++|.+++.+++.| +|+||+|+|+|||++++++.
T Consensus 229 ~~~a~-----~~~d~~~l~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~ 293 (317)
T 1kkh_A 229 IDEAL-----KIKNKEDFGKLMTKNHELLKKL-NISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNE 293 (317)
T ss_dssp HHHHH-----HCCSHHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCG
T ss_pred HHHHH-----HcCCHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEech
Confidence 34566 6689999999999999998875 679999999999999999 99999999999999999983
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.00 E-value=5.3e-10 Score=94.57 Aligned_cols=97 Identities=9% Similarity=0.070 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH--HHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcce
Q psy7890 61 SHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLM--NQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCIS 138 (196)
Q Consensus 61 a~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm--~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGc 138 (196)
..|.+.+..|+.+++++| .++|++.||++| +..|+.++. .++|+++.+++.+++. ++|+||||+|+ |
T Consensus 192 ~~~~~~~~~~~~~~~~al-----~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG~--~ 260 (296)
T 1h72_C 192 LKDLVNNVGKACGMVYAL-----YNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSGP--S 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTSS--C
T ss_pred HHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCCh--h
Confidence 458888889999999999 999999999999 666677664 5899999999999999 88999999998 7
Q ss_pred EEEeehh-----hHHhccC-CCcEEEeeCCccchhh
Q psy7890 139 QDAHLVN-----IMAWVQS-QPRWCISQDAHLVNIM 168 (196)
Q Consensus 139 viaLv~~-----v~~~Y~~-~p~~~i~~~~~g~~i~ 168 (196)
+++|+++ +.+.... .+.++++++..|++++
T Consensus 261 v~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 261 IIAFPKEEFIDEVENILRDYYENTIRTEVGKGVEVV 296 (296)
T ss_dssp EEEEECGGGHHHHHHHHHHHCSCEEEECBCCCCEEC
T ss_pred eEEEecHHHHHHHHHHHHHhccCceeccCCCCeEeC
Confidence 8888752 1111111 1334477877787764
No 17
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=98.69 E-value=8e-08 Score=82.67 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHH-------HHHHHHH---HHHcCCceEEEccCCCcc
Q psy7890 68 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEA-------LDSLVTC---FREAGAYGARLTGAGWCI 137 (196)
Q Consensus 68 ~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pe-------lD~Lv~~---A~~~Ga~GaKltGaGfGG 137 (196)
..|+.++++|| .++|++.||++|+++|..|++.+..++|+ ...+.+. +++.|+.++-++|+| +
T Consensus 210 ~~~~~~~~~al-----~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG--p 282 (317)
T 2gs8_A 210 AIDYQHMLTYL-----KTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG--P 282 (317)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--S
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC--C
Confidence 66888999999 99999999999999999999876555444 4555543 344798899999986 7
Q ss_pred eEEEeehh-----hHHhccCCCcEEEeeCCccchh
Q psy7890 138 SQDAHLVN-----IMAWVQSQPRWCISQDAHLVNI 167 (196)
Q Consensus 138 cviaLv~~-----v~~~Y~~~p~~~i~~~~~g~~i 167 (196)
|+++|++. +.+..+..+++|++++++|+++
T Consensus 283 tv~~l~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 283 NVKVLCLEKDLAQLAERLGKNYRIIVSKTKDLPDV 317 (317)
T ss_dssp CEEEEEEGGGHHHHHHHHHTTSEEEEEEBCCCCCC
T ss_pred eEEEEEcHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 88888872 2223333689999999999874
No 18
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=98.39 E-value=1e-06 Score=76.24 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHH--HHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEe
Q psy7890 65 YLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQ--SHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAH 142 (196)
Q Consensus 65 ~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~e--Sh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaL 142 (196)
+.+..|+..+..+| .++|++.|+++|+. .|+..+.. .+|+++.+++.+++.|++|++|+|+| +|+++|
T Consensus 185 ~~~~~~~~~~~~al-----~~~d~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al 254 (298)
T 3hul_A 185 VQASSIANVMIAAI-----LRNDMTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG--PTVLVF 254 (298)
T ss_dssp HHHHHHHHHHHHHH-----TTTCHHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--SCEEEE
T ss_pred HHHHHHHHHHHHHH-----HcCCHHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--hheEEE
Confidence 34556788899999 99999999999973 35555432 47999999999999999999999998 578888
Q ss_pred ehh-----hHHhcc---CCCcEEEeeCC-ccchhh
Q psy7890 143 LVN-----IMAWVQ---SQPRWCISQDA-HLVNIM 168 (196)
Q Consensus 143 v~~-----v~~~Y~---~~p~~~i~~~~-~g~~i~ 168 (196)
++. +.+... ..-.++++++. +|++|.
T Consensus 255 ~~~~~a~~v~~~l~~~~~~~~~~~~~~~~~Ga~v~ 289 (298)
T 3hul_A 255 APRNLANKLQTSLQTLEIDADVLLLDVEGSGAEVF 289 (298)
T ss_dssp ECGGGHHHHHHHHHTTCCSSEEEEEEBCCCCCEEE
T ss_pred ECHHHHHHHHHHHHhcCCCcEEEEcccCCCceEEE
Confidence 872 222222 23456676654 577664
No 19
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=98.30 E-value=3.4e-06 Score=74.15 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=69.1
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHH---HcCCceEEEccCCCcceE
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYEC-------SHEALDSLVTCFR---EAGAYGARLTGAGWCISQ 139 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~v-------S~pelD~Lv~~A~---~~Ga~GaKltGaGfGGcv 139 (196)
|+..+.+|| .++|++.|+++|.+++..|...+.- -.|+++.+++.+. +.|++|+.++|+| +|+
T Consensus 221 ~~~~l~~Al-----~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv 293 (332)
T 3qt5_A 221 DLNEAKEAV-----KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNV 293 (332)
T ss_dssp HHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCE
T ss_pred HHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcE
Confidence 788999999 9999999999998665555443321 3589999988885 7899999999765 788
Q ss_pred EEeehh-----hH---HhccCCCcEEEe-eCCccchh
Q psy7890 140 DAHLVN-----IM---AWVQSQPRWCIS-QDAHLVNI 167 (196)
Q Consensus 140 iaLv~~-----v~---~~Y~~~p~~~i~-~~~~g~~i 167 (196)
++|++. +. .++.....++++ .|+.|+++
T Consensus 294 ~~l~~~~~a~~v~~~l~~~~~~~~~~v~~~~g~G~~~ 330 (332)
T 3qt5_A 294 KVLVEKKNKQAVMEQFLKVFDESKIIASDIISSGVEI 330 (332)
T ss_dssp EEEEEHHHHHHHHHHHHTTSCGGGEEEEEBCSSCCEE
T ss_pred EEEECHHHHHHHHHHHHHhCCCceEEEeccccCCcEe
Confidence 888872 21 222234688899 99999875
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=97.86 E-value=4.4e-06 Score=72.56 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=62.9
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh----
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN---- 145 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~---- 145 (196)
++..+.++| .++|++.+++.|....+..+ ...+|+++.+++.++++|++|++|+|+| +|+++|++.
T Consensus 202 ~~~~~~~al-----~~~d~~~l~~~l~n~le~~~---~~~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~~~~a 271 (306)
T 3pyf_A 202 EPGPVLAAL-----AAGDPDQLAPLLGNEMQAAA---VSLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSA 271 (306)
T ss_dssp CHHHHHHHH-----HHTCHHHHGGGCEETTHHHH---HHHCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESSHHHH
T ss_pred CHHHHHHHH-----HhCCHHHHHHHhccchHHHH---HHhChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCCHHHH
Confidence 466788888 88999999998842211111 1247999999999999999999999998 899999972
Q ss_pred --hHHhc---cCCCcEEEe-eCCccchhhh
Q psy7890 146 --IMAWV---QSQPRWCIS-QDAHLVNIMA 169 (196)
Q Consensus 146 --v~~~Y---~~~p~~~i~-~~~~g~~i~~ 169 (196)
+.+.. +....++++ -+..|++|..
T Consensus 272 ~~~~~~l~~~g~~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 272 IDVGAQLSGAGVCRTVRVATGPVPGARVVS 301 (306)
T ss_dssp HHHHHHHHHTTSSSEEEEEEECCBCSEEC-
T ss_pred HHHHHHHHhcCCcceEEEeecCCCCCEEec
Confidence 11222 223345554 5577888764
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=97.31 E-value=0.00035 Score=58.63 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeehh------hHHhccCCCcEEEeeCCcc
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVN------IMAWVQSQPRWCISQDAHL 164 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~~------v~~~Y~~~p~~~i~~~~~g 164 (196)
++|+++.+++.+++.|++|+||+|+| +|+++|++. +.+.....-.+|+++.++|
T Consensus 209 ~~p~l~~l~~~~~~~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~g 268 (275)
T 1uek_A 209 LFPELKEVRGRMRALGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALRAWGRAWAGTLGGG 268 (275)
T ss_dssp HCTHHHHHHHHHHHTTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHTTTSEEEEEEECCC
T ss_pred hChHHHHHHHHHHhCCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhhhccEEEEEEecCC
Confidence 46999999999999999999999998 699999872 2222222126788877664
No 22
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=96.92 E-value=5.6e-05 Score=63.67 Aligned_cols=61 Identities=8% Similarity=-0.100 Sum_probs=46.3
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHH-HHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEE-EccCCCcceEEEeeh
Q psy7890 70 RVERFLSVCRSDISEEQKLQQLGTLMN-QSHTSLATKYECSHEALDSLVTCFREAGAYGAR-LTGAGWCISQDAHLV 144 (196)
Q Consensus 70 RV~ea~~AL~~~~~~~gD~~~fG~Lm~-eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaK-ltGaGfGGcviaLv~ 144 (196)
|+..+ ++| .++|++.|+++|+ .=|.. + . ..+|+++.+++.+++.|+ ++ |||+| +|+++|++
T Consensus 188 ~~~~~-~al-----~~~d~~~~~~~~~n~l~~~-~--~-~~~p~l~~~~~~~~~~Ga--a~~mSGsG--~~v~~l~~ 250 (271)
T 2v8p_A 188 TPEYA-EEK-----IQRIISGEVEEIENVLGDI-A--R-ELYPEINEVYRFVEYLGF--KPFVSGSG--STVYFFGG 250 (271)
T ss_dssp CHHHH-HHH-----HHHHHTTCGGGCCBHHHHH-H--H-HHCHHHHHHHHHHHHTTC--CCEECTTS--SCEEESSC
T ss_pred chhHH-HHh-----hcCCHHHHHHHHhCChhhH-h--H-HhChHHHHHHHHHHhCCC--ccCccccC--cCeEEEeC
Confidence 44445 788 8889998888873 21211 1 1 257999999999999997 99 99998 79999997
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=96.73 E-value=0.0026 Score=57.43 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHH----cC-CceEEEccCCC
Q psy7890 68 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECS-------HEALDSLVTCFRE----AG-AYGARLTGAGW 135 (196)
Q Consensus 68 ~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS-------~pelD~Lv~~A~~----~G-a~GaKltGaGf 135 (196)
..|+.++++|| .++|++.||++|.+++..|.+.+..+ .|....+.+.+.+ .| +.++-++|+|
T Consensus 251 ~~~~~~l~~AL-----~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG- 324 (416)
T 1fi4_A 251 PKRFEVMRKAI-----VEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG- 324 (416)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS-
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC-
Confidence 35788899999 99999999999999888877644323 3455666665543 38 6788899987
Q ss_pred cceEEEeeh
Q psy7890 136 CISQDAHLV 144 (196)
Q Consensus 136 GGcviaLv~ 144 (196)
.++++|++
T Consensus 325 -Ptv~al~~ 332 (416)
T 1fi4_A 325 -PNAVLYYL 332 (416)
T ss_dssp -SCEEEEEE
T ss_pred -CcEEEEEC
Confidence 56777776
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=95.86 E-value=0.019 Score=50.71 Aligned_cols=70 Identities=7% Similarity=0.057 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCC-------CCCCHHHHHHHHHHHH----cCCceEEEccCCCc
Q psy7890 68 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKY-------ECSHEALDSLVTCFRE----AGAYGARLTGAGWC 136 (196)
Q Consensus 68 ~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~-------~vS~pelD~Lv~~A~~----~Ga~GaKltGaGfG 136 (196)
..|+..+++|| .++|++.|+++|...+..|...+ ..=.|+...+++.+.+ .|++|+.++|||-.
T Consensus 213 ~~~~~~l~~AL-----~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGPn 287 (323)
T 3lto_A 213 EANLKLLLNAF-----ENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGPN 287 (323)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSSC
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence 46888999999 99999999999876655544421 1134665555555544 68999999999988
Q ss_pred ceEEEe
Q psy7890 137 ISQDAH 142 (196)
Q Consensus 137 GcviaL 142 (196)
.++++.
T Consensus 288 v~~l~~ 293 (323)
T 3lto_A 288 VHLLYR 293 (323)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 666644
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=95.01 E-value=0.12 Score=45.74 Aligned_cols=70 Identities=10% Similarity=0.054 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhc----C--C-CCCCHHHHHHHHHHHH---c-C-CceEEEccCCC
Q psy7890 68 AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLAT----K--Y-ECSHEALDSLVTCFRE---A-G-AYGARLTGAGW 135 (196)
Q Consensus 68 ~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~----l--~-~vS~pelD~Lv~~A~~---~-G-a~GaKltGaGf 135 (196)
..|+..++.|| .++|++.||++|.+++..|.. . + ..-.|....+.+.+.+ . | +.++-++|+|-
T Consensus 222 ~~~~~~l~~Al-----~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaGP 296 (380)
T 2hke_A 222 PERMKIASRAI-----KARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGA 296 (380)
T ss_dssp HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCCC
Confidence 45778899999 999999999999876555443 1 1 1246777777777655 4 8 77899998764
Q ss_pred cceEEEeeh
Q psy7890 136 CISQDAHLV 144 (196)
Q Consensus 136 GGcviaLv~ 144 (196)
++++|++
T Consensus 297 --tv~~l~~ 303 (380)
T 2hke_A 297 --NCFLFVL 303 (380)
T ss_dssp --CEEEEEE
T ss_pred --cEEEEEC
Confidence 5666665
No 26
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=94.80 E-value=0.11 Score=47.58 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=53.2
Q ss_pred HHHHHH--HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH----hhcC--C-CCCCHHHHHHHHHHHHc-----CCce
Q psy7890 62 HEIYLE--AYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTS----LATK--Y-ECSHEALDSLVTCFREA-----GAYG 127 (196)
Q Consensus 62 ~Hi~~E--~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~s----Lr~l--~-~vS~pelD~Lv~~A~~~-----Ga~G 127 (196)
.+.+.+ ..|+..+.+|| .++|++.||++|...... +++- + ..=+|+...+++.+.+. |+.+
T Consensus 240 ~~~v~~~~~~~~~~l~~AL-----~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~ 314 (414)
T 3f0n_A 240 KFRAESVVPERMKEMTRCI-----QEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKV 314 (414)
T ss_dssp HHHHHHTHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceE
Confidence 345554 46888999999 999999999998755433 3331 1 11357766666666662 8899
Q ss_pred EEEccCCCcceEEEe
Q psy7890 128 ARLTGAGWCISQDAH 142 (196)
Q Consensus 128 aKltGaGfGGcviaL 142 (196)
+-++|||-..++++.
T Consensus 315 ~~tsdAGPnv~vl~~ 329 (414)
T 3f0n_A 315 AYTFDAGPNAVIFTL 329 (414)
T ss_dssp EEECCSSSCEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 999999977666544
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=94.29 E-value=0.067 Score=45.34 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCCcceEEEeeh
Q psy7890 109 SHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLV 144 (196)
Q Consensus 109 S~pelD~Lv~~A~~~Ga~GaKltGaGfGGcviaLv~ 144 (196)
.+|+++.+++.+++.| |++|+|+| +|++++++
T Consensus 218 ~~p~l~~i~~~~~~~G--~a~~SGsG--~tvf~l~~ 249 (283)
T 2ww4_A 218 RFREVDAVLSWLLEYA--PSRLTGTG--ACVFAEFD 249 (283)
T ss_dssp HCHHHHHHHHHHHTTS--CEEECTTS--SCEEEEES
T ss_pred cChHHHHHHHHHHHcC--CceECCcc--cceEEEeC
Confidence 4799999999999999 89999997 78999887
No 28
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=41.69 E-value=31 Score=21.74 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy7890 59 KSSHEIYLEAYRVERFLSVC 78 (196)
Q Consensus 59 ~Ra~Hi~~E~~RV~ea~~AL 78 (196)
.|=.||+.|+.+|.+|+.-|
T Consensus 12 ~rkerIv~eCnavrqALQdL 31 (40)
T 4e17_B 12 DRRERIVAECNAVRQALQDL 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999998877
No 29
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=33.94 E-value=35 Score=23.67 Aligned_cols=37 Identities=8% Similarity=0.263 Sum_probs=27.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHHcCCceEEE--ccCCC--cceE
Q psy7890 102 LATKYECSHEALDSLVTCFREAGAYGARL--TGAGW--CISQ 139 (196)
Q Consensus 102 Lr~l~~vS~pelD~Lv~~A~~~Ga~GaKl--tGaGf--GGcv 139 (196)
|.+.+.+|.+.+...++...+.| +=-|. +||+- |||-
T Consensus 22 La~~l~VS~~TIRrdL~~Le~~G-~l~R~~~~GgaC~~g~C~ 62 (78)
T 1xn7_A 22 ISQTLNTPQPMINAMLQQLESMG-KAVRIQEEPDGCLSGSCK 62 (78)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHT-SEEEECCCCCCCCCSSCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCC-CEEEecCcCCCCCCCCCC
Confidence 55556678888999998888888 44788 77764 5554
Done!