RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7890
(196 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 57.0 bits (137), Expect = 4e-11
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 65 YLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLV-TCFREA 123
E + L + G L+N SH SL YE + LD+L T ++A
Sbjct: 66 RARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQA 125
Query: 124 GAYGARLTGAGW 135
G GAR+TGAG+
Sbjct: 126 GVLGARMTGAGF 137
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 52.8 bits (126), Expect = 1e-09
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 72 ERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREA-GAYGARL 130
E + + + G LM +SH SL YE S LD LV G YG+R+
Sbjct: 68 EIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRM 127
Query: 131 TGAGW 135
TG G+
Sbjct: 128 TGGGF 132
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 51.3 bits (122), Expect = 5e-09
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 72 ERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLT 131
E + D +E ++++G ++ +H LA Y S E LD V E GAYGARLT
Sbjct: 64 ENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAMELGAYGARLT 123
Query: 132 GAGW 135
GAG+
Sbjct: 124 GAGF 127
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 46.5 bits (110), Expect = 2e-07
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 59 KSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 118
S I LE RV + ++ L LM+ + L H +LD L
Sbjct: 41 TSIDAISLECERVLG----EMAAAPVPEQYLVLEELMDMNQHHLN-ALGVGHASLDQLCQ 95
Query: 119 CFREAGAYGARLTGAGW 135
G ++LTGAG
Sbjct: 96 VTAAHG-LHSKLTGAGG 111
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 34.9 bits (80), Expect = 0.002
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 84 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 135
+ + + G LM ++H L K S LD +V G +GA+LTGAG
Sbjct: 54 KIKNKEDFGKLMTKNHELL-KKLNISTPKLDRIVDIGNRFG-FGAKLTGAGG 103
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 27.2 bits (60), Expect = 1.4
Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 84 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHL 143
++ K Q + L + LA++ S++ L ++C Y A + +
Sbjct: 310 KKIKAQIIDELFSYEVKRLASQLGISYDILRDYLSCIDVYRTY------ANQIVKECDKT 363
Query: 144 VNIMAWVQSQPRWCISQDAHLVNIMA-WVQSQPRYRLSQVLLENLNE 189
I + P ++ + A + +R ++++ ++NE
Sbjct: 364 NEIEEATKRNPEAYTKLQQYMPAVYAKAYEDTFLFRYNRLI--SINE 408
>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
Length = 346
Score = 26.0 bits (56), Expect = 3.1
Identities = 11/99 (11%), Positives = 27/99 (27%)
Query: 91 LGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWV 150
LGT+ S A + A+ + A Y +++ +
Sbjct: 18 LGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHG 77
Query: 151 QSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNE 189
+ S+ + + + + E L++
Sbjct: 78 SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHD 116
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 288
Score = 25.2 bits (55), Expect = 5.1
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 90 QLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGAR 129
Q+ L + H+ E EA+DSL G
Sbjct: 168 QIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMV 207
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 25.5 bits (55), Expect = 5.6
Identities = 7/55 (12%), Positives = 16/55 (29%)
Query: 142 HLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVWC 196
H+ N + Q + +N++ +LE + +V
Sbjct: 186 HIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLT 240
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 24.9 bits (53), Expect = 6.6
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 85 EQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAY 126
E+K M S + K+E + + T +R
Sbjct: 12 EKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKEL 53
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria
(Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Length = 123
Score = 24.2 bits (52), Expect = 7.7
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 92 GTLMNQSHTSLATKYECSHEALDSLVTCFREA 123
G M ++H L + + E D++
Sbjct: 62 GRYMREAHKELVENHGLNGEHFDAVAEDLLAT 93
>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 24.5 bits (52), Expect = 10.0
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 110 HEALDSLVTCFREAGAYGA-RLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIM 168
+AL+ A AY G + + ++A L ++
Sbjct: 34 QKALEVGYRSIDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLK 93
Query: 169 AW 170
Sbjct: 94 KL 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.131 0.403
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,495
Number of extensions: 28292
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 15
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)