Query psy7891
Match_columns 929
No_of_seqs 408 out of 2847
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:26:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0104|consensus 100.0 5E-134 1E-138 1120.1 70.0 875 7-911 4-890 (902)
2 KOG0100|consensus 100.0 1E-119 3E-124 939.8 61.4 603 24-755 35-644 (663)
3 KOG0103|consensus 100.0 3E-114 6E-119 963.3 63.1 725 25-856 1-727 (727)
4 PTZ00009 heat shock 70 kDa pro 100.0 3.2E-98 7E-103 898.7 72.9 606 24-755 3-615 (653)
5 PRK13410 molecular chaperone D 100.0 1E-95 2E-100 872.9 70.4 594 26-754 3-607 (668)
6 PTZ00400 DnaK-type molecular c 100.0 1.8E-95 4E-100 874.1 71.9 588 25-752 41-636 (663)
7 PRK13411 molecular chaperone D 100.0 3.5E-94 7.6E-99 862.7 74.0 590 26-754 3-601 (653)
8 PRK00290 dnaK molecular chaper 100.0 1E-92 2.2E-97 851.7 74.1 587 26-754 3-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 1.3E-92 2.8E-97 849.4 71.1 589 25-754 39-636 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 2.6E-92 5.7E-97 839.4 72.7 589 25-751 27-622 (657)
11 TIGR02350 prok_dnaK chaperone 100.0 1.4E-91 3E-96 839.6 72.5 585 26-752 1-593 (595)
12 CHL00094 dnaK heat shock prote 100.0 3.8E-91 8.2E-96 835.2 71.2 588 26-754 3-599 (621)
13 KOG0101|consensus 100.0 6.1E-91 1.3E-95 787.9 51.4 605 22-755 4-615 (620)
14 TIGR01991 HscA Fe-S protein as 100.0 1.6E-88 3.4E-93 807.4 72.2 577 27-750 1-581 (599)
15 PF00012 HSP70: Hsp70 protein; 100.0 4.6E-88 9.9E-93 816.9 67.4 595 27-754 1-602 (602)
16 PRK05183 hscA chaperone protei 100.0 2.1E-87 4.6E-92 799.1 69.5 578 25-752 19-599 (616)
17 KOG0102|consensus 100.0 8.2E-85 1.8E-89 705.7 44.5 593 23-752 25-625 (640)
18 PRK01433 hscA chaperone protei 100.0 4.3E-82 9.3E-87 746.4 69.3 546 26-747 20-572 (595)
19 COG0443 DnaK Molecular chapero 100.0 6.7E-81 1.5E-85 731.8 59.3 571 24-754 4-578 (579)
20 PRK11678 putative chaperone; P 100.0 5.2E-54 1.1E-58 490.9 38.6 346 27-419 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1.9E-37 4.2E-42 346.8 34.9 307 28-419 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.1E-36 2.3E-41 339.7 35.5 306 26-416 5-324 (335)
23 PRK13927 rod shape-determining 100.0 3.7E-34 8E-39 320.7 34.6 306 27-418 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 7.7E-34 1.7E-38 317.6 34.8 306 28-418 5-327 (333)
25 PRK13930 rod shape-determining 100.0 9.2E-33 2E-37 309.8 34.6 308 27-419 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 8.4E-29 1.8E-33 269.7 24.1 303 27-416 3-319 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 2.7E-28 5.8E-33 258.1 24.2 204 135-414 35-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 4.5E-26 9.7E-31 237.7 29.1 311 25-420 6-333 (342)
29 PRK15080 ethanolamine utilizat 99.9 2.8E-25 6E-30 239.3 28.8 202 139-416 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 8.9E-21 1.9E-25 215.4 27.0 195 174-415 157-371 (371)
31 PRK09472 ftsA cell division pr 99.8 3E-19 6.5E-24 205.2 29.4 198 174-418 166-388 (420)
32 COG0849 ftsA Cell division ATP 99.7 2.1E-14 4.5E-19 160.9 27.0 206 164-419 158-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.6 2.3E-14 5E-19 163.2 21.3 301 27-418 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.5 1.6E-13 3.4E-18 156.5 18.5 298 26-417 2-346 (373)
35 COG4820 EutJ Ethanolamine util 99.4 1.8E-13 3.8E-18 133.0 8.3 195 144-414 76-270 (277)
36 PRK13917 plasmid segregation p 99.4 2.6E-11 5.5E-16 135.7 25.5 213 160-421 109-339 (344)
37 PTZ00280 Actin-related protein 99.3 2.7E-10 5.8E-15 131.5 24.5 225 140-396 82-338 (414)
38 PF00022 Actin: Actin; InterP 99.3 1.4E-10 3E-15 133.3 20.5 312 25-419 4-368 (393)
39 TIGR03739 PRTRC_D PRTRC system 99.2 2.1E-09 4.5E-14 119.7 22.6 208 160-416 101-318 (320)
40 PTZ00452 actin; Provisional 99.2 1.3E-09 2.7E-14 123.8 20.4 236 140-417 80-348 (375)
41 PTZ00281 actin; Provisional 99.1 1.4E-09 3E-14 123.8 18.5 233 141-417 82-349 (376)
42 TIGR01175 pilM type IV pilus a 99.1 5.8E-09 1.3E-13 117.9 22.7 183 174-416 142-347 (348)
43 PTZ00004 actin-2; Provisional 99.1 2.7E-09 5.9E-14 121.6 19.6 235 140-417 81-351 (378)
44 PTZ00466 actin-like protein; P 99.1 4.3E-09 9.3E-14 119.6 20.5 235 140-417 87-353 (380)
45 PF11104 PilM_2: Type IV pilus 99.1 4.6E-09 9.9E-14 118.1 19.4 184 174-416 135-339 (340)
46 KOG0679|consensus 98.6 1.5E-06 3.3E-11 93.5 18.6 116 140-282 86-202 (426)
47 PF06406 StbA: StbA protein; 98.6 8.1E-07 1.8E-11 98.7 17.2 172 190-413 141-316 (318)
48 TIGR00241 CoA_E_activ CoA-subs 98.6 7.5E-07 1.6E-11 95.5 15.9 173 193-414 73-247 (248)
49 COG4972 PilM Tfp pilus assembl 98.6 8.9E-06 1.9E-10 86.6 22.8 161 177-395 151-312 (354)
50 PRK15027 xylulokinase; Provisi 98.6 1.1E-06 2.3E-11 103.9 17.4 85 336-423 355-439 (484)
51 COG5277 Actin and related prot 98.5 3.6E-06 7.9E-11 96.5 19.0 191 28-282 9-204 (444)
52 TIGR02628 fuculo_kin_coli L-fu 98.5 1.5E-06 3.2E-11 102.2 13.9 86 335-423 360-445 (465)
53 PF07520 SrfB: Virulence facto 98.4 4.9E-05 1.1E-09 92.4 24.3 273 134-420 415-836 (1002)
54 PRK10331 L-fuculokinase; Provi 98.3 6.3E-06 1.4E-10 97.0 15.5 85 335-423 356-441 (470)
55 COG1070 XylB Sugar (pentulose 98.3 9.6E-06 2.1E-10 96.0 15.6 81 336-420 369-450 (502)
56 TIGR01314 gntK_FGGY gluconate 98.2 2.2E-05 4.8E-10 93.3 16.8 82 338-423 371-453 (505)
57 PRK00047 glpK glycerol kinase; 98.2 0.00017 3.6E-09 85.7 22.7 82 337-423 372-455 (498)
58 PTZ00294 glycerol kinase-like 98.2 0.00013 2.7E-09 86.8 21.4 81 338-423 376-458 (504)
59 TIGR03192 benz_CoA_bzdQ benzoy 98.1 0.00075 1.6E-08 72.7 22.8 46 373-418 242-288 (293)
60 TIGR01311 glycerol_kin glycero 98.1 0.00031 6.8E-09 83.3 22.0 83 336-423 367-451 (493)
61 TIGR01312 XylB D-xylulose kina 98.1 8.4E-05 1.8E-09 87.9 16.9 82 337-423 359-442 (481)
62 PLN02295 glycerol kinase 98.0 0.00047 1E-08 82.1 22.3 53 370-423 412-464 (512)
63 TIGR01234 L-ribulokinase L-rib 98.0 0.00022 4.8E-09 85.4 19.5 84 336-423 404-488 (536)
64 KOG0676|consensus 97.8 0.00026 5.6E-09 78.6 13.9 110 143-281 82-192 (372)
65 TIGR03286 methan_mark_15 putat 97.8 0.0022 4.7E-08 71.9 21.2 45 373-417 358-402 (404)
66 COG1924 Activator of 2-hydroxy 97.8 0.0046 1E-07 67.6 22.6 72 343-418 318-390 (396)
67 PRK10719 eutA reactivating fac 97.8 0.00015 3.4E-09 81.9 11.2 190 162-419 89-296 (475)
68 TIGR02261 benz_CoA_red_D benzo 97.7 0.01 2.2E-07 63.3 22.4 44 373-416 214-262 (262)
69 COG4457 SrfB Uncharacterized p 97.6 0.0069 1.5E-07 69.7 20.7 84 332-420 742-848 (1014)
70 PF08841 DDR: Diol dehydratase 97.5 0.0021 4.5E-08 67.2 14.2 188 185-416 106-329 (332)
71 KOG0797|consensus 96.9 0.0096 2.1E-07 66.9 12.1 122 134-281 195-322 (618)
72 PRK04123 ribulokinase; Provisi 96.9 0.016 3.6E-07 69.7 15.4 81 338-422 409-490 (548)
73 COG1069 AraB Ribulose kinase [ 96.8 0.069 1.5E-06 61.4 18.7 225 178-423 232-483 (544)
74 PF02782 FGGY_C: FGGY family o 96.7 0.0049 1.1E-07 63.5 8.2 48 370-418 149-196 (198)
75 TIGR02259 benz_CoA_red_A benzo 96.5 0.061 1.3E-06 59.9 14.9 45 372-416 383-432 (432)
76 PRK13317 pantothenate kinase; 96.3 0.1 2.2E-06 56.7 15.4 48 370-417 222-273 (277)
77 PF06277 EutA: Ethanolamine ut 96.1 0.087 1.9E-06 60.2 14.2 195 163-420 87-295 (473)
78 TIGR01315 5C_CHO_kinase FGGY-f 96.0 0.016 3.5E-07 69.5 8.3 84 335-422 408-494 (541)
79 PLN02669 xylulokinase 95.8 0.024 5.3E-07 68.0 8.4 49 369-418 444-492 (556)
80 TIGR02627 rhamnulo_kin rhamnul 95.4 0.058 1.3E-06 63.3 9.4 84 335-423 354-438 (454)
81 PRK10640 rhaB rhamnulokinase; 95.1 0.077 1.7E-06 62.5 9.5 81 338-423 345-426 (471)
82 KOG2517|consensus 95.0 0.25 5.4E-06 57.3 12.8 74 346-423 393-466 (516)
83 PRK10939 autoinducer-2 (AI-2) 94.9 0.08 1.7E-06 63.3 9.1 81 338-422 379-460 (520)
84 KOG0677|consensus 94.5 0.54 1.2E-05 48.9 12.2 194 162-395 102-319 (389)
85 KOG2531|consensus 94.1 0.15 3.1E-06 57.2 7.6 54 365-419 437-490 (545)
86 PF01968 Hydantoinase_A: Hydan 93.7 0.19 4.2E-06 55.1 8.0 66 346-414 217-283 (290)
87 TIGR00555 panK_eukar pantothen 93.4 1.8 4E-05 46.8 14.6 46 369-414 229-278 (279)
88 PF14450 FtsA: Cell division p 93.3 0.2 4.4E-06 47.2 6.3 49 221-280 1-53 (120)
89 PF14574 DUF4445: Domain of un 93.2 0.71 1.5E-05 52.8 11.7 61 330-391 288-348 (412)
90 PRK10854 exopolyphosphatase; P 92.9 1.6 3.5E-05 52.0 14.6 54 179-237 101-155 (513)
91 KOG0681|consensus 92.2 1.2 2.7E-05 51.0 11.5 124 136-282 91-216 (645)
92 PRK09557 fructokinase; Reviewe 91.9 6 0.00013 43.6 16.8 44 187-236 96-139 (301)
93 COG1548 Predicted transcriptio 91.7 0.32 6.9E-06 50.6 5.6 73 146-237 76-148 (330)
94 PRK09698 D-allose kinase; Prov 90.8 29 0.00063 38.1 22.8 43 187-236 104-146 (302)
95 COG4819 EutA Ethanolamine util 90.6 1.4 3E-05 47.6 9.3 20 218-237 144-163 (473)
96 KOG0680|consensus 90.0 3 6.5E-05 45.0 11.2 102 161-280 93-198 (400)
97 PTZ00288 glucokinase 1; Provis 89.7 9.1 0.0002 44.0 15.7 24 22-45 23-46 (405)
98 PF07318 DUF1464: Protein of u 89.1 6.4 0.00014 43.6 13.3 54 369-422 259-319 (343)
99 TIGR00744 ROK_glcA_fam ROK fam 88.7 23 0.0005 39.2 18.1 93 138-236 33-140 (318)
100 PF02541 Ppx-GppA: Ppx/GppA ph 88.7 2.2 4.9E-05 46.6 9.7 90 135-237 31-130 (285)
101 PF13941 MutL: MutL protein 88.6 2.1 4.5E-05 49.6 9.7 31 365-395 380-411 (457)
102 PTZ00400 DnaK-type molecular c 88.4 2.7 5.8E-05 51.8 11.1 68 761-855 569-636 (663)
103 PTZ00297 pantothenate kinase; 88.2 20 0.00042 48.1 19.3 48 369-416 1390-1444(1452)
104 PRK00290 dnaK molecular chaper 86.8 3.1 6.7E-05 51.0 10.3 68 761-855 528-595 (627)
105 smart00842 FtsA Cell division 86.6 5.1 0.00011 40.8 10.3 29 175-203 157-185 (187)
106 PTZ00107 hexokinase; Provision 86.3 25 0.00054 41.2 16.8 80 339-420 370-461 (464)
107 TIGR02350 prok_dnaK chaperone 84.4 4.8 0.00011 49.0 10.4 68 761-855 526-593 (595)
108 PRK09585 anmK anhydro-N-acetyl 84.3 13 0.00029 41.9 12.9 66 349-419 268-339 (365)
109 PRK05082 N-acetylmannosamine k 84.3 68 0.0015 35.0 23.7 69 348-417 212-287 (291)
110 KOG0100|consensus 84.2 5.5 0.00012 44.2 9.3 51 793-855 591-641 (663)
111 KOG1385|consensus 84.1 2.7 5.8E-05 47.1 7.0 158 26-237 68-231 (453)
112 PTZ00009 heat shock 70 kDa pro 83.8 6.3 0.00014 48.5 11.1 73 761-855 540-612 (653)
113 PRK09604 UGMP family protein; 83.8 52 0.0011 36.9 17.5 47 370-416 254-306 (332)
114 PF14450 FtsA: Cell division p 83.4 0.37 8.1E-06 45.3 0.2 61 140-204 46-119 (120)
115 KOG1369|consensus 83.3 8.1 0.00018 44.8 10.8 65 167-239 184-251 (474)
116 PRK11031 guanosine pentaphosph 83.0 5.3 0.00011 47.4 9.6 55 178-237 95-150 (496)
117 PRK14101 bifunctional glucokin 83.0 14 0.0003 45.5 13.6 74 345-418 244-330 (638)
118 KOG0681|consensus 82.9 1.4 2.9E-05 50.7 4.3 66 353-418 539-614 (645)
119 PLN03184 chloroplast Hsp70; Pr 82.5 12 0.00026 46.3 12.7 68 761-855 567-634 (673)
120 COG0248 GppA Exopolyphosphatas 81.7 7.6 0.00016 45.7 10.0 92 136-237 49-147 (492)
121 COG0554 GlpK Glycerol kinase [ 81.6 7 0.00015 44.9 9.3 84 337-424 371-455 (499)
122 PRK13411 molecular chaperone D 81.0 9.5 0.00021 47.0 11.1 70 761-855 530-599 (653)
123 PF11593 Med3: Mediator comple 80.4 27 0.00058 38.7 12.8 39 714-754 9-47 (379)
124 COG5026 Hexokinase [Carbohydra 80.2 7.4 0.00016 44.1 8.7 22 23-44 73-94 (466)
125 PF01869 BcrAD_BadFG: BadF/Bad 80.1 6.5 0.00014 42.6 8.4 69 345-416 198-271 (271)
126 TIGR03706 exo_poly_only exopol 79.8 7 0.00015 43.1 8.6 85 144-237 56-143 (300)
127 PF02685 Glucokinase: Glucokin 78.3 44 0.00094 37.2 14.2 203 186-418 89-315 (316)
128 COG2377 Predicted molecular ch 76.8 65 0.0014 36.1 14.6 174 218-420 162-345 (371)
129 PF03702 UPF0075: Uncharacteri 75.3 9.2 0.0002 43.2 7.9 70 344-418 261-337 (364)
130 CHL00094 dnaK heat shock prote 75.1 14 0.00031 45.2 10.2 67 762-855 531-597 (621)
131 smart00732 YqgFc Likely ribonu 74.8 2.9 6.4E-05 37.4 3.2 21 25-45 1-21 (99)
132 PLN02666 5-oxoprolinase 74.4 50 0.0011 43.7 15.1 76 337-415 454-531 (1275)
133 TIGR03281 methan_mark_12 putat 73.5 19 0.0004 39.2 9.1 50 371-422 263-315 (326)
134 COG0145 HyuA N-methylhydantoin 72.7 4.2 9.2E-05 49.6 4.7 42 191-237 255-296 (674)
135 KOG0104|consensus 69.1 22 0.00047 43.0 9.2 58 751-818 652-709 (902)
136 PRK00976 hypothetical protein; 69.1 32 0.00068 38.2 10.0 51 370-422 263-315 (326)
137 PF00370 FGGY_N: FGGY family o 68.5 4.9 0.00011 42.8 3.7 20 26-45 1-20 (245)
138 KOG2708|consensus 68.1 43 0.00092 34.7 9.8 75 336-415 224-301 (336)
139 TIGR03723 bact_gcp putative gl 67.9 2E+02 0.0044 31.9 17.7 44 370-413 259-308 (314)
140 PF03652 UPF0081: Uncharacteri 67.4 5.6 0.00012 38.3 3.4 21 25-45 1-21 (135)
141 PLN02939 transferase, transfer 66.5 1.6E+02 0.0035 37.6 16.4 174 653-844 239-426 (977)
142 PRK03011 butyrate kinase; Prov 63.6 12 0.00026 42.4 5.6 44 370-413 295-342 (358)
143 cd06007 R3H_DEXH_helicase R3H 63.1 19 0.0004 29.3 5.1 38 152-191 7-44 (59)
144 PRK02224 chromosome segregatio 61.1 3.1E+02 0.0067 35.2 18.6 71 650-722 145-215 (880)
145 PLN02362 hexokinase 60.5 36 0.00078 40.3 9.0 56 173-236 204-261 (509)
146 PLN02920 pantothenate kinase 1 60.2 52 0.0011 37.3 9.7 49 369-417 296-351 (398)
147 PRK14878 UGMP family protein; 60.0 2.8E+02 0.0061 30.9 19.3 41 370-410 241-287 (323)
148 PLN02405 hexokinase 58.8 47 0.001 39.3 9.5 58 173-238 204-263 (497)
149 KOG0994|consensus 58.3 3.8E+02 0.0082 34.6 16.8 46 666-715 1456-1501(1758)
150 PF00349 Hexokinase_1: Hexokin 58.0 27 0.0006 36.2 6.8 22 218-239 62-83 (206)
151 COG1940 NagC Transcriptional r 57.2 1.2E+02 0.0026 33.4 12.3 40 187-231 106-145 (314)
152 KOG1386|consensus 56.8 77 0.0017 36.8 10.4 160 28-237 12-180 (501)
153 cd02640 R3H_NRF R3H domain of 56.7 29 0.00064 28.3 5.2 43 149-192 4-46 (60)
154 PRK09605 bifunctional UGMP fam 55.3 4.4E+02 0.0095 31.6 20.9 51 370-420 245-301 (535)
155 PF08735 DUF1786: Putative pyr 55.1 1E+02 0.0022 33.0 10.3 73 158-237 111-185 (254)
156 KOG0101|consensus 54.8 27 0.00059 41.9 6.7 51 794-856 563-613 (620)
157 PF12238 MSA-2c: Merozoite sur 54.7 51 0.0011 33.9 7.8 11 686-696 14-24 (205)
158 PF00012 HSP70: Hsp70 protein; 54.2 48 0.001 40.4 9.2 50 793-856 552-601 (602)
159 COG4012 Uncharacterized protei 53.5 74 0.0016 33.8 8.8 94 168-285 186-279 (342)
160 TIGR03123 one_C_unchar_1 proba 53.5 9 0.0002 42.4 2.4 19 219-237 128-146 (318)
161 PRK00109 Holliday junction res 53.5 15 0.00033 35.5 3.7 22 24-45 3-24 (138)
162 PRK01433 hscA chaperone protei 53.3 95 0.0021 37.9 11.3 52 793-855 530-585 (595)
163 TIGR00329 gcp_kae1 metallohydr 51.9 3.4E+02 0.0073 30.0 14.6 38 352-394 245-282 (305)
164 COG0533 QRI7 Metal-dependent p 50.5 1.2E+02 0.0025 33.9 10.2 53 338-395 230-286 (342)
165 PRK13410 molecular chaperone D 49.4 1E+02 0.0022 38.2 10.8 72 761-855 530-601 (668)
166 PRK05183 hscA chaperone protei 49.3 96 0.0021 38.0 10.6 48 793-855 552-599 (616)
167 PLN02914 hexokinase 48.8 1.2E+02 0.0027 35.8 10.8 61 171-239 202-264 (490)
168 TIGR00143 hypF [NiFe] hydrogen 48.7 25 0.00055 43.6 5.5 48 370-417 658-711 (711)
169 PRK10939 autoinducer-2 (AI-2) 48.6 14 0.00031 44.2 3.3 20 26-45 4-23 (520)
170 PF02543 CmcH_NodU: Carbamoylt 48.0 42 0.00091 38.1 6.7 83 335-422 131-217 (360)
171 PRK13310 N-acetyl-D-glucosamin 47.1 2.2E+02 0.0049 31.1 12.3 45 186-236 95-139 (303)
172 PLN02377 3-ketoacyl-CoA syntha 46.6 49 0.0011 39.2 7.1 73 342-414 165-241 (502)
173 COG0816 Predicted endonuclease 46.5 20 0.00043 34.7 3.2 21 25-45 2-22 (141)
174 TIGR01315 5C_CHO_kinase FGGY-f 46.0 16 0.00036 43.9 3.3 19 27-45 2-20 (541)
175 COG4296 Uncharacterized protei 46.0 40 0.00088 31.7 4.9 22 717-738 90-111 (156)
176 COG2441 Predicted butyrate kin 45.6 1.3E+02 0.0029 32.3 9.2 52 370-422 273-336 (374)
177 PRK00404 tatB sec-independent 44.4 2.2E+02 0.0047 27.6 9.7 12 844-855 71-82 (141)
178 KOG0964|consensus 44.1 6.6E+02 0.014 32.0 15.8 179 655-849 202-407 (1200)
179 TIGR01991 HscA Fe-S protein as 40.9 1.7E+02 0.0037 35.7 10.9 48 793-855 536-583 (599)
180 PF00480 ROK: ROK family; Int 40.6 1.1E+02 0.0023 30.5 7.8 88 137-236 31-134 (179)
181 PLN02669 xylulokinase 40.3 26 0.00057 42.2 3.8 23 23-45 6-28 (556)
182 PRK04123 ribulokinase; Provisi 39.0 26 0.00057 42.2 3.6 19 26-44 4-22 (548)
183 cd02641 R3H_Smubp-2_like R3H d 38.8 74 0.0016 25.9 5.0 28 164-191 18-45 (60)
184 PLN02596 hexokinase-like 37.8 1.9E+02 0.0041 34.2 10.1 59 173-239 204-264 (490)
185 TIGR03722 arch_KAE1 universal 36.5 6.3E+02 0.014 28.0 20.3 42 370-411 242-289 (322)
186 KOG2150|consensus 36.4 8.2E+02 0.018 29.3 15.2 33 701-743 111-143 (575)
187 PF02801 Ketoacyl-synt_C: Beta 35.8 41 0.00088 31.4 3.6 46 351-396 25-72 (119)
188 PRK04863 mukB cell division pr 35.2 1.3E+03 0.029 31.5 20.1 30 793-822 433-466 (1486)
189 PRK13321 pantothenate kinase; 35.2 33 0.00072 36.8 3.2 19 27-45 2-20 (256)
190 PHA02566 alt ADP-ribosyltransf 34.6 8.5E+02 0.018 29.8 14.6 52 793-850 423-476 (684)
191 cd02646 R3H_G-patch R3H domain 34.6 80 0.0017 25.4 4.6 41 148-191 3-43 (58)
192 PRK07058 acetate kinase; Provi 34.6 1.9E+02 0.0042 33.0 9.2 46 346-395 298-344 (396)
193 PF10458 Val_tRNA-synt_C: Valy 34.6 1.9E+02 0.0041 23.9 6.9 53 671-723 4-56 (66)
194 PTZ00340 O-sialoglycoprotein e 34.2 7.2E+02 0.016 28.0 18.6 41 350-395 248-288 (345)
195 PRK13318 pantothenate kinase; 34.1 36 0.00078 36.6 3.3 19 27-45 2-20 (258)
196 cd00529 RuvC_resolvase Hollida 33.9 34 0.00074 33.6 2.8 18 27-44 2-19 (154)
197 PRK03918 chromosome segregatio 33.7 1.1E+03 0.024 30.0 19.5 17 801-817 358-374 (880)
198 KOG4603|consensus 33.4 3.5E+02 0.0077 26.8 9.3 74 733-815 90-169 (201)
199 COG4012 Uncharacterized protei 33.1 1E+02 0.0022 32.9 6.1 81 220-312 2-96 (342)
200 PLN02854 3-ketoacyl-CoA syntha 32.7 1.1E+02 0.0024 36.4 7.2 47 350-396 189-236 (521)
201 PRK13331 pantothenate kinase; 32.3 46 0.001 35.6 3.7 24 22-45 4-27 (251)
202 TIGR02259 benz_CoA_red_A benzo 32.3 38 0.00082 38.5 3.1 20 26-45 3-22 (432)
203 PF08317 Spc7: Spc7 kinetochor 32.2 7.5E+02 0.016 27.5 17.1 19 793-811 271-289 (325)
204 cd02639 R3H_RRM R3H domain of 32.0 85 0.0018 25.6 4.3 30 163-192 17-46 (60)
205 KOG0517|consensus 31.7 9.1E+02 0.02 33.3 15.0 55 798-852 950-1004(2473)
206 PLN03170 chalcone synthase; Pr 31.6 2.3E+02 0.0049 32.7 9.5 50 347-396 104-154 (401)
207 COG2192 Predicted carbamoyl tr 31.2 9.8E+02 0.021 28.6 23.2 82 336-421 255-338 (555)
208 KOG0103|consensus 30.9 1.2E+02 0.0027 36.6 7.0 67 675-751 649-725 (727)
209 smart00787 Spc7 Spc7 kinetocho 29.6 8.1E+02 0.018 27.2 16.9 20 793-812 266-285 (312)
210 PF10168 Nup88: Nuclear pore c 29.5 3.8E+02 0.0081 33.5 11.3 158 685-856 539-709 (717)
211 PLN03188 kinesin-12 family pro 29.4 9.8E+02 0.021 31.7 14.7 94 715-825 1050-1148(1320)
212 PRK00247 putative inner membra 29.2 87 0.0019 36.2 5.4 7 360-366 94-100 (429)
213 PF08006 DUF1700: Protein of u 29.2 1E+02 0.0022 31.1 5.5 58 684-750 4-62 (181)
214 PRK00039 ruvC Holliday junctio 29.1 44 0.00096 33.3 2.7 20 25-44 2-21 (164)
215 PF00349 Hexokinase_1: Hexokin 28.8 50 0.0011 34.2 3.2 38 170-207 164-204 (206)
216 PLN03173 chalcone synthase; Pr 28.7 2.9E+02 0.0062 31.8 9.6 49 348-396 101-150 (391)
217 COG3426 Butyrate kinase [Energ 27.4 1.6E+02 0.0034 31.9 6.4 47 367-413 293-343 (358)
218 PRK13326 pantothenate kinase; 27.4 60 0.0013 35.1 3.5 22 24-45 5-26 (262)
219 PTZ00186 heat shock 70 kDa pre 27.2 5.6E+02 0.012 31.7 12.3 49 794-855 575-623 (657)
220 PLN02192 3-ketoacyl-CoA syntha 27.0 1.7E+02 0.0037 34.8 7.4 55 342-396 169-224 (511)
221 KOG0678|consensus 26.9 5.8E+02 0.012 28.4 10.5 100 163-281 108-209 (415)
222 cd00327 cond_enzymes Condensin 26.8 3.1E+02 0.0067 28.8 9.1 45 352-396 10-56 (254)
223 COG5185 HEC1 Protein involved 26.8 1.1E+03 0.023 27.6 13.2 99 663-763 294-413 (622)
224 PRK00182 tatB sec-independent 26.8 2.7E+02 0.0059 27.5 7.5 50 755-813 23-72 (160)
225 PRK13310 N-acetyl-D-glucosamin 26.8 1.5E+02 0.0032 32.5 6.7 47 370-416 245-300 (303)
226 PF07106 TBPIP: Tat binding pr 26.7 3.7E+02 0.0081 26.7 9.0 49 759-816 115-163 (169)
227 PF00815 Histidinol_dh: Histid 26.4 1.1E+02 0.0024 35.1 5.6 49 160-208 136-185 (412)
228 COG1521 Pantothenate kinase ty 26.3 3E+02 0.0065 29.5 8.4 118 197-383 108-225 (251)
229 PRK01156 chromosome segregatio 25.8 1.5E+03 0.033 29.0 16.6 14 802-815 367-380 (895)
230 PF08580 KAR9: Yeast cortical 25.7 6.7E+02 0.015 31.1 12.4 43 799-841 131-174 (683)
231 PF10112 Halogen_Hydrol: 5-bro 25.6 7.3E+02 0.016 25.3 11.7 76 704-782 66-148 (199)
232 KOG2707|consensus 25.6 1E+03 0.022 26.9 16.6 112 143-273 83-199 (405)
233 KOG0996|consensus 25.6 1.6E+03 0.036 29.4 19.0 18 650-667 774-791 (1293)
234 cd00529 RuvC_resolvase Hollida 25.5 4E+02 0.0087 26.1 8.8 65 350-415 80-149 (154)
235 PF08392 FAE1_CUT1_RppA: FAE1/ 25.4 2.1E+02 0.0046 31.2 7.2 44 352-395 86-130 (290)
236 PRK07515 3-oxoacyl-(acyl carri 25.4 96 0.0021 35.3 5.0 47 347-395 267-313 (372)
237 TIGR00250 RNAse_H_YqgF RNAse H 25.4 43 0.00093 32.0 1.8 18 28-45 1-18 (130)
238 PLN02902 pantothenate kinase 25.1 3.4E+02 0.0075 34.2 9.7 49 369-417 345-400 (876)
239 cd00520 RRF Ribosome recycling 24.4 6.3E+02 0.014 25.5 10.1 64 646-718 96-159 (179)
240 PF15290 Syntaphilin: Golgi-lo 23.9 2.4E+02 0.0053 30.3 7.0 21 705-725 88-109 (305)
241 KOG0804|consensus 23.6 1.2E+03 0.026 27.1 12.9 16 161-176 75-90 (493)
242 PLN03168 chalcone synthase; Pr 23.5 3.7E+02 0.0079 30.9 9.2 52 345-396 97-149 (389)
243 PRK13320 pantothenate kinase; 23.5 77 0.0017 33.8 3.5 20 26-45 3-22 (244)
244 TIGR03185 DNA_S_dndD DNA sulfu 23.4 1.4E+03 0.031 28.0 18.0 42 800-856 478-519 (650)
245 PF08429 PLU-1: PLU-1-like pro 23.2 1E+03 0.023 26.3 14.5 31 795-825 298-328 (335)
246 PF01150 GDA1_CD39: GDA1/CD39 23.1 82 0.0018 36.7 3.9 19 218-236 163-181 (434)
247 PLN03172 chalcone synthase fam 23.1 2.8E+02 0.0061 31.8 8.2 50 347-396 100-150 (393)
248 PF02075 RuvC: Crossover junct 22.9 75 0.0016 31.1 3.0 18 27-44 1-18 (149)
249 PRK07764 DNA polymerase III su 22.8 1.7E+03 0.036 28.5 19.3 16 648-663 176-191 (824)
250 PTZ00107 hexokinase; Provision 22.5 2.9E+02 0.0062 32.6 8.1 22 218-239 73-94 (464)
251 TIGR02707 butyr_kinase butyrat 22.3 1.1E+02 0.0024 34.5 4.7 44 370-413 293-340 (351)
252 PF07426 Dynactin_p22: Dynacti 22.3 8.1E+02 0.018 24.7 14.3 102 730-853 55-161 (174)
253 PRK14954 DNA polymerase III su 22.2 1.5E+03 0.033 27.8 23.4 38 808-845 337-374 (620)
254 PF00435 Spectrin: Spectrin re 22.2 5.1E+02 0.011 22.2 10.0 41 711-751 13-53 (105)
255 COG5026 Hexokinase [Carbohydra 22.1 90 0.0019 35.8 3.7 22 218-239 74-95 (466)
256 cd00825 decarbox_cond_enzymes 21.6 3.7E+02 0.0079 29.6 8.7 69 350-419 12-109 (332)
257 PF12401 DUF3662: Protein of u 21.4 4E+02 0.0087 24.8 7.4 71 298-376 28-101 (116)
258 TIGR00067 glut_race glutamate 21.4 1.6E+02 0.0034 31.6 5.3 41 370-413 172-212 (251)
259 KOG2517|consensus 21.4 73 0.0016 37.6 3.0 19 25-43 6-24 (516)
260 KOG1924|consensus 21.2 5.2E+02 0.011 32.0 9.7 116 797-924 470-591 (1102)
261 cd00834 KAS_I_II Beta-ketoacyl 21.2 4.5E+02 0.0098 29.9 9.6 44 329-373 52-95 (406)
262 smart00806 AIP3 Actin interact 21.1 1.3E+03 0.028 26.6 15.2 36 653-694 154-189 (426)
263 PRK03918 chromosome segregatio 20.9 1.1E+03 0.024 30.0 14.0 14 842-855 743-756 (880)
264 PF08429 PLU-1: PLU-1-like pro 20.5 1.2E+03 0.026 25.9 17.0 176 650-838 82-287 (335)
265 TIGR02627 rhamnulo_kin rhamnul 20.1 51 0.0011 38.7 1.4 18 28-45 1-18 (454)
266 KOG0250|consensus 20.0 2E+03 0.043 28.4 19.2 168 653-851 234-413 (1074)
No 1
>KOG0104|consensus
Probab=100.00 E-value=4.7e-134 Score=1120.11 Aligned_cols=875 Identities=46% Similarity=0.718 Sum_probs=757.7
Q ss_pred HHHHHHHHHHHhhhcccCCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCC
Q psy7891 7 TLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86 (929)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~ 86 (929)
.+++.+++++++.+++..++|++||||+.|++||+++||.|++|++|..++|++|++|+|.+++|+||++|..+++|+|+
T Consensus 4 ~~llv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~ 83 (902)
T KOG0104|consen 4 RVLLVILLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQ 83 (902)
T ss_pred hhHHHHHHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcH
Confidence 45556666666777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhhhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEE
Q psy7891 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVI 166 (929)
Q Consensus 87 ~t~~~~K~llG~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VI 166 (929)
+++.+++.|||+..+||.+..|.+++|++.++.++.|++|.|.+++...|++|+|+||+|.+.++.|+.+...+|.++||
T Consensus 84 ~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~Vi 163 (902)
T KOG0104|consen 84 STYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVI 163 (902)
T ss_pred HHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEE
Confidence 99999999999999999999999999999999998999999999997799999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccC
Q psy7891 167 IVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 246 (929)
Q Consensus 167 tVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~ 246 (929)
|||.||++.||+++++||++||++++.||||.+||||+||++++..++.+ +++++|||||+|+|.++||.|..++.+..
T Consensus 164 TVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~-~q~~i~YDMGs~sT~Ativsy~~v~~k~~ 242 (902)
T KOG0104|consen 164 TVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINET-PQHYIFYDMGSGSTSATIVSYQLVKTKEQ 242 (902)
T ss_pred eCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCC-ceEEEEEecCCCceeEEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999988 99999999999999999999998887766
Q ss_pred CcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEee
Q psy7891 247 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326 (929)
Q Consensus 247 G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~ 326 (929)
| ...+++++++++||..|||..|..+|.+||.+.|.++++.+.++..|||+|+||.++|+++|.+||+|+++.++|++
T Consensus 243 g--~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEs 320 (902)
T KOG0104|consen 243 G--GKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIES 320 (902)
T ss_pred c--CccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 5 45789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCch
Q psy7891 327 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTD 405 (929)
Q Consensus 327 l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~d 405 (929)
|++|+||+.+|||++||++|.+++.|+..||.++|.+++++.++|+.|+|+||+||+|.||+.|.+++| .++++++|+|
T Consensus 321 L~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaD 400 (902)
T KOG0104|consen 321 LIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNAD 400 (902)
T ss_pred HhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred HHHHhhHHHHHHhhcCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCceEEEEE
Q psy7891 406 EAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVS 485 (929)
Q Consensus 406 eaVA~GAa~~aa~~s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~ 485 (929)
||+++||+|+||.||.+|++++|.|.|.++|||.+.+.+..+-...++....+|++|.+||++++++|+.++++|.+.+.
T Consensus 401 EA~vmGav~~aA~LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n 480 (902)
T KOG0104|consen 401 EAAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNIN 480 (902)
T ss_pred HHHHHHHHHHHHhhcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccc
Confidence 99999999999999999999999999999999999998652201223345679999999999999999999999999998
Q ss_pred eccCcCcCChhhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccc
Q psy7891 486 YASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKL 565 (929)
Q Consensus 486 ~g~~~~~~~~~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~ 565 (929)
|+ .. | .++.+|.++||..+..+..+...+.++|+++|.+|.+|++.|+.++++|++..+..+ + ..
T Consensus 481 ~~-~~-----------~-~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~-~-~~ 545 (902)
T KOG0104|consen 481 YG-DL-----------G-QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDS-G-DK 545 (902)
T ss_pred hh-hh-----------c-cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCccc-c-hh
Confidence 88 32 2 356789999999998887666677899999999999999999999999988533322 1 12
Q ss_pred cccccccccCCCCCCCCC-Ccccc--cc---cCCCCCC--CCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeec
Q psy7891 566 GNTLTSLFSRSKTDENEK-PINEA--VD---EGNKTAE--EPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKE 637 (929)
Q Consensus 566 ~~~~~~~f~~~~~~~~~~-~~~~~--~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 637 (929)
..+++.+|++++-+++.+ ..+++ ++ ++.+.++ +..+. ++ +++.+. ++.++.. +.+..++...-.+.+
T Consensus 546 ~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~-d~--s~e~k~-e~~t~e~-~~~~~~~~~~~p~~~ 620 (902)
T KOG0104|consen 546 KSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEE-DA--SQEDKT-EKETSEA-QKPTEKKETPAPMVV 620 (902)
T ss_pred hhhhhccccccccccccccccchhhhhhhccCccccccccccccc-cc--cccccc-cccchhc-cCcchhhcccCccee
Confidence 234444554322111111 01111 00 0111011 11111 11 111111 1111000 001111111222333
Q ss_pred cceeeEeecCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHH
Q psy7891 638 PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDE 717 (929)
Q Consensus 638 ~l~v~~~~~~~~~ls~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e 717 (929)
.+.+..++.+.+.|+...+..+..++..+.++|+.+.+|++|.|.||+|+|++.++|++++|.++.+++|++.|.+.+..
T Consensus 621 ~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~ 700 (902)
T KOG0104|consen 621 RLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSL 700 (902)
T ss_pred EeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHH
Confidence 46677778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhcc---ccCcCCcccCCC
Q psy7891 718 ITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL---SLNTNETEDLNL 794 (929)
Q Consensus 718 ~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 794 (929)
+.+||+|++.+.++++|.+++.+|++++..+.+|..++..+|..++.|..+|+++.+|+...+++ ++.. ..
T Consensus 701 ~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d------~~ 774 (902)
T KOG0104|consen 701 LMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKD------TI 774 (902)
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhc------cc
Confidence 99999999999999999999999999999999999999999999999999999999999998854 3332 36
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCCCccccc
Q psy7891 795 FSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKE 874 (929)
Q Consensus 795 ~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k~~~pk~~~~~~~~~~~~~ 874 (929)
|+..+++.|.+.++++..||++....|.++++++||++++.||..|++.|++++.+++||+|.++|++.++++.+++..+
T Consensus 775 ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~~~~~k~~e~k~k~~~ 854 (902)
T KOG0104|consen 775 FTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRKPRKQKKKEKKKKTKE 854 (902)
T ss_pred hhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccCccccchhhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7891 875 DKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPS 911 (929)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (929)
++.+...++ +++...|+++..++-....++.++.|+
T Consensus 855 e~~~s~~~~-~~~~~ae~s~e~~t~e~~~e~~~~~P~ 890 (902)
T KOG0104|consen 855 EKEESESND-ETEETAENSTETETTEVNDEQQTQEPS 890 (902)
T ss_pred hhhhhccCC-CCcchhhccccccceecccccCCCCCc
Confidence 888877765 555556666666666655566666665
No 2
>KOG0100|consensus
Probab=100.00 E-value=1.5e-119 Score=939.76 Aligned_cols=603 Identities=29% Similarity=0.438 Sum_probs=559.8
Q ss_pred CCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
...||||||||||+||+++++| .++|+.|.+|+|.+||+|+|.+.+|++|++|.+++..||+||+++.|||||+.|+|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 3579999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCc--eeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDN--ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~--~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
.+|...++|||..+..++ ...+.+.++++ +.|+|+++.||+|..+++.|+.|+|..++++|+|||+||+++||+|++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~-kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDG-KPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEcCCC-CccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999997665554 77788888754 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+|..+|||+|+|+||||||||++||+.+... .+++||||+||||||||++.+. ++.|+|+++.
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~g-----EknilVfDLGGGTFDVSlLtId------------nGVFeVlaTn 255 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDG-----EKNILVFDLGGGTFDVSLLTID------------NGVFEVLATN 255 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCC-----cceEEEEEcCCceEEEEEEEEc------------CceEEEEecC
Confidence 9999999999999999999999999998763 8999999999999999999986 3499999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHH
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 341 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~e 341 (929)
||.+|||.|||+++++||.+.|++ +++.|++.+-|++.+|+++||+||+.||...++.+.|++|+++.||+-++||..
T Consensus 256 GDThLGGEDFD~rvm~~fiklykk--K~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAk 333 (663)
T KOG0100|consen 256 GDTHLGGEDFDQRVMEYFIKLYKK--KHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAK 333 (663)
T ss_pred CCcccCccchHHHHHHHHHHHHhh--hcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhH
Confidence 999999999999999999999999 777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
||++.-+||.....|++++|+++++...+|+.|+||||++|||.||++|+++|+ ++.++.+|||||||+|||.||..+|
T Consensus 334 FEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvls 413 (663)
T KOG0100|consen 334 FEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLS 413 (663)
T ss_pred HHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 497 (929)
+.-...++.+.|++|+.+||+.. |+ .+..|||||+.+|.+++..|++..++ +.|.+|+| ++.... +
T Consensus 414 Gee~t~divLLDv~pLtlGIETv-----GG---VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEG-ER~mtk--d 482 (663)
T KOG0100|consen 414 GEEDTGDIVLLDVNPLTLGIETV-----GG---VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEG-ERPMTK--D 482 (663)
T ss_pred cccCcCcEEEEeeccccceeeee-----cc---eeeccccCCcccCccccceeeecccCCceEEEEEeec-cccccc--c
Confidence 98889999999999999999987 44 38899999999999999999988665 89999999 877433 6
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
|+.+|. |.++||+++|+++ ++|+|+|++|.||||+|++.+ .++.
T Consensus 483 n~lLGk-----FdltGipPAPRGv-------pqIEVtFevDangiL~VsAeD---------Kgtg--------------- 526 (663)
T KOG0100|consen 483 NHLLGK-----FDLTGIPPAPRGV-------PQIEVTFEVDANGILQVSAED---------KGTG--------------- 526 (663)
T ss_pred cccccc-----ccccCCCCCCCCC-------ccEEEEEEEccCceEEEEeec---------cCCC---------------
Confidence 666665 5889999999988 799999999999999999864 1110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
++.+++ +.++...||+++|+
T Consensus 527 ---------------------------------------------------~~~kit---------ItNd~~rLt~EdIe 546 (663)
T KOG0100|consen 527 ---------------------------------------------------KKEKIT---------ITNDKGRLTPEDIE 546 (663)
T ss_pred ---------------------------------------------------CcceEE---------EecCCCCCCHHHHH
Confidence 001111 34567789999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhch-hhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL-EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~-~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+|++..++|..+|+..+++.++||.||+|.|++++.+.+ +.+...+++++++.+...+++..+||++ +.++.+++|.+
T Consensus 547 rMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~-n~~a~~Ee~~e 625 (663)
T KOG0100|consen 547 RMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLES-NQDASKEEFKE 625 (663)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhh-cccccHHHHHH
Confidence 999999999999999999999999999999999999986 6799999999999999999999999996 59999999999
Q ss_pred HHHHHHhchhhHHHHHHhh
Q psy7891 737 KLNEINSLVVPIWERHREH 755 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e~ 755 (929)
|+++|..++.||..++|..
T Consensus 626 k~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 626 KKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988764
No 3
>KOG0103|consensus
Probab=100.00 E-value=2.6e-114 Score=963.25 Aligned_cols=725 Identities=30% Similarity=0.460 Sum_probs=646.1
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
|+|+|||||+.+|.+|+++.| ++++|.|+.|.|.||++|+|..++|++|.+|..+..+|+.|++..+|||+|+.|+||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 569999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeec-CCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVA-DEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 105 v~~~~~~~p~~~~~~-~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
++...+++|+..+.. |+..|.-+-+++..+.|++++|+||+|.+|+..++..+..++.+|||+||+||++.||+++++|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 999999999966554 4444544455677788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCC-CCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFN-ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~-~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
|++|||++++||+|.+|+||+||+++.+... ...+++|+|+|||++++.+|++.|. .| .+.++++.+
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~------kG------~lkvl~ta~ 227 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFT------KG------KLKVLATAF 227 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeec------cC------cceeeeeec
Confidence 9999999999999999999999999876432 2238999999999999999999997 35 899999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 342 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ef 342 (929)
|..+||++||..|.+||+++|+. ++++|+..|+++..||+.+|||+|++||+|+....+|+|++++.|.+..|+|++|
T Consensus 228 D~~lGgr~fDe~L~~hfa~efk~--kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEf 305 (727)
T KOG0103|consen 228 DRKLGGRDFDEALIDHFAKEFKT--KYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEF 305 (727)
T ss_pred ccccccchHHHHHHHHHHHHhcc--ccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHH
Confidence 99999999999999999999999 5556999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
|++|.++++|+..++.++|+++++..+||+.|++|||+||||.|++.|.++||+.+++++|.|||||+||||+||++|+.
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~ 385 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPT 385 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCceEEEEEeccCcCcCChhhhcccc
Q psy7891 423 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLG 502 (929)
Q Consensus 423 f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~g~~~~~~~~~~~~~~g 502 (929)
||+|+|.++|+.||+|.+.|....+|++. ...+||+|.++|..|.+||++. .+|++.++|+ +...+|. .
T Consensus 386 frVRef~v~Di~pysIs~~w~~~~ed~~~---~~evF~~~~~~p~~K~lT~~Rk-~~F~lea~yt-~~~~lp~------~ 454 (727)
T KOG0103|consen 386 FRVREFSVEDIVPYSISLRWVKQGEDGGS---VTEVFPKGHPSPSVKLLTFNRK-GPFTLEAKYT-KVNKLPY------P 454 (727)
T ss_pred ccceecceecccceeEEEEeccccccCCC---ceeeecCCCCCCCceEEEEEec-CceEEEEEec-cccccCC------C
Confidence 99999999999999999999987766531 4689999999999999999998 8999999999 7666662 2
Q ss_pred ceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCC
Q psy7891 503 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 582 (929)
Q Consensus 503 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 582 (929)
...|++|.+.++.+. ..++..+++|++++|.+||++|.++.++.+...++ .+.
T Consensus 455 ~~kI~~~~i~~v~~~------~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~vee-v~~-------------------- 507 (727)
T KOG0103|consen 455 KPKIEKWTITGVTPS------EDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEE-VPE-------------------- 507 (727)
T ss_pred CCceeeEEecccccC------ccccccceeEEEEEcCccceeeecceeecccchhc-ccc--------------------
Confidence 346788899988864 23355789999999999999999998775443221 100
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHH
Q psy7891 583 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 662 (929)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~ 662 (929)
.+ .+ ...+.+ .- +..+..+.|+++++..|++..... ..|+..+++..+++
T Consensus 508 ~~--~e-------------~~~~~~-------~~------~~~~~~~~k~kvk~~~L~~~~~~~--~~l~~~~l~~~~e~ 557 (727)
T KOG0103|consen 508 EP--ME-------------YDDAAK-------ML------ERIAPAENKKKVKKVDLPIEAYTK--GALITDELELYIEK 557 (727)
T ss_pred ch--hh-------------hhcchh-------hh------hhhccccccceeeeccccceeeec--cccCHHHHHHHHHH
Confidence 00 00 000000 00 001111224455566777664432 46999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy7891 663 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 742 (929)
Q Consensus 663 l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~ 742 (929)
+.+|..+|+...++.+++|+||+|||+||++|. +.|.+|+++++|++|...|+++++|||+||+|.++..|..|+.+|+
T Consensus 558 E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~-~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk 636 (727)
T KOG0103|consen 558 ENKMILQDKLEKETVDAKNALEEYVYDMRDKLS-DKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELK 636 (727)
T ss_pred HHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh-hhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7891 743 SLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQN 822 (929)
Q Consensus 743 ~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~ 822 (929)
.+++ ..|+.+++.||.+++.+.+.|+.++..+.. +..++...+++.+.|++.++.+|+
T Consensus 637 ~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~--------------------~~~k~~~~~~~a~kw~~~~~~~q~ 694 (727)
T KOG0103|consen 637 KLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES--------------------EMEKVLLEIEEAEKWLERKSNKQN 694 (727)
T ss_pred hhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999 889999999999999999999888765433 577888999999999999999999
Q ss_pred hcCCCCCcceeHHHHHHHHHHHHHHHHHHHhccc
Q psy7891 823 QLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 856 (929)
Q Consensus 823 ~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k 856 (929)
+++++.+| +.+++++++.++|+..|.++++++|
T Consensus 695 ~~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 695 KLSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred cccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 99999999 9999999999999999999998874
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=3.2e-98 Score=898.74 Aligned_cols=606 Identities=29% Similarity=0.449 Sum_probs=538.0
Q ss_pred CCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
.+.+||||||||||+||++.+| +++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.++|+
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4679999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 182 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~ 182 (929)
.++.+.+++||..+...+....+.+...+ +..|+|++|++++|++|++.|+.++|..+.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 99999999999765544444445554443 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 183 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 183 Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
||++|||++++||+||+|||++|++.+... . +.++|||||||||||+||+++. .| .++|+++.|
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~---~-~~~vlv~D~GggT~dvsv~~~~------~~------~~~v~a~~g 225 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGD---G-EKNVLIFDLGGGTFDVSLLTIE------DG------IFEVKATAG 225 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCC---C-CCEEEEEECCCCeEEEEEEEEe------CC------eEEEEEecC
Confidence 999999999999999999999999865431 2 6889999999999999999986 23 799999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 342 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ef 342 (929)
+..+||++||.+|++||.++|..+++ +.++..+++++.||+.+||++|+.||.+.++.+.|++++++.|+.++|||++|
T Consensus 226 d~~lGG~d~D~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~f 304 (653)
T PTZ00009 226 DTHLGGEDFDNRLVEFCVQDFKRKNR-GKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARF 304 (653)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHH
Confidence 99999999999999999999987442 35778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
|++|+++++++..+|+++|+.+++...+|+.|+||||+||||+||++|+++|+ ..+..++|||+|||+|||++|+++++
T Consensus 305 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 305 EELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999997 68889999999999999999999997
Q ss_pred C--cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChh
Q psy7891 422 G--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPE 496 (929)
Q Consensus 422 ~--f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~ 496 (929)
. |+++++.+.|++||+||++.. ++ .+.+||++|++||++++.+|++..++ +.|.||+| +.....
T Consensus 385 ~~~~~~~~~~~~dv~p~slgi~~~----~~----~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~eg-e~~~~~-- 453 (653)
T PTZ00009 385 EQSSQVQDLLLLDVTPLSLGLETA----GG----VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEG-ERAMTK-- 453 (653)
T ss_pred CccccccceEEEeecccccCcccc----CC----ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEec-ccccCC--
Confidence 5 789999999999999998754 22 26789999999999999999876443 99999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+.+.|.|+++.+++. +.|+|+|++|.||+|+|++.+ ..+.
T Consensus 454 ~n~-----~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~~~~---------~~t~-------------- 498 (653)
T PTZ00009 454 DNN-----LLGKFHLDGIPPAPRGV-------PQIEVTFDIDANGILNVSAED---------KSTG-------------- 498 (653)
T ss_pred CCc-----eEEEEEEcCCCCCCCCC-------ceEEEEEEECCCCeEEEEEec---------ccCC--------------
Confidence 333 46677888998765443 579999999999999998753 1000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
+.. .+.+. ....+|+.+++
T Consensus 499 ------------------------------------------------------~~~----~~~i~---~~~~~ls~~~i 517 (653)
T PTZ00009 499 ------------------------------------------------------KSN----KITIT---NDKGRLSKADI 517 (653)
T ss_pred ------------------------------------------------------cee----eEEEe---eccccccHHHH
Confidence 000 12222 12356999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++.+.+|..+|+.++++.+++|+||+|||++|++|++++|..++++++|++|.+.|+++++||| ++++++.++|++
T Consensus 518 ~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~-~~~~~~~~~~~~ 596 (653)
T PTZ00009 518 DRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLE-KNQLAEKEEFEH 596 (653)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHH
Confidence 9999999999999999999999999999999999999975569999999999999999999999999 578899999999
Q ss_pred HHHHHHhchhhHHHHHHhh
Q psy7891 737 KLNEINSLVVPIWERHREH 755 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e~ 755 (929)
|+++|+++++||..|++..
T Consensus 597 kl~eL~~~~~pi~~r~~~~ 615 (653)
T PTZ00009 597 KQKEVESVCNPIMTKMYQA 615 (653)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999997543
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-95 Score=872.89 Aligned_cols=594 Identities=26% Similarity=0.381 Sum_probs=525.0
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .+.++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.+.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred cEEEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 58999999999999999999 667889999999999999996 57899999999999999999999999999999866
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
++...+++||...... .|.+.+.+. .+..|+|++|++|+|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNE--QGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 5556677888654433 344555542 2468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
|++|||++++||+||+||||+|++.+. . +.++|||||||||||+||+++. .| .++|+++.|+
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~-----~-~~~vlV~DlGgGT~Dvsv~~~~------~g------~~~V~at~gd 219 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS-----S-SQTVLVFDLGGGTFDVSLLEVG------NG------VFEVKATSGD 219 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC-----C-CCEEEEEECCCCeEEEEEEEEc------CC------eEEEEEeecC
Confidence 999999999999999999999998653 2 6899999999999999999986 23 7999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeH
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 339 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR 339 (929)
..+||.+||.+|++||.++|..+ .+.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++.+.|||
T Consensus 220 ~~lGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (668)
T PRK13410 220 TQLGGNDFDKRIVDWLAEQFLEK--EGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDR 297 (668)
T ss_pred CCCChhHHHHHHHHHHHHHHHhh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECH
Confidence 99999999999999999999884 445888899999999999999999999999999999987643 478899999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 340 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
++||++|.++++++..+|+++|+++++.+.+|+.|+||||+||||+|+++|+++||..+..++|||||||+|||++|+++
T Consensus 298 ~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 298 KQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. +| .+.+||++|++||++++.+|++..+ .+.|.||+| +.....
T Consensus 378 s~~--~~~~~l~Dv~p~slgie~~----~g----~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qG-e~~~~~-- 444 (668)
T PRK13410 378 AGE--LKDLLLLDVTPLSLGLETI----GG----VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQG-EREMAS-- 444 (668)
T ss_pred ccc--ccceeEEeeccccccceec----CC----eeEEEEeCCCcccccccccceeccCCCcEEEEEEEee-cccccc--
Confidence 984 6789999999999999886 22 2779999999999999999987643 489999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+++.|.|+++++.+. ++|+|+|++|.||+|+|++.+. .+.
T Consensus 445 ~n~-----~lg~~~l~~i~~~~~g~-------~~I~v~f~id~nGiL~V~a~d~---------~tg-------------- 489 (668)
T PRK13410 445 DNK-----SLGRFKLSGIPPAPRGV-------PQVQVAFDIDANGILQVSATDR---------TTG-------------- 489 (668)
T ss_pred CCc-----eEEEEEEeCCCCCCCCC-------CeEEEEEEECCCcEEEEEEEEc---------CCC--------------
Confidence 333 46677899999876554 6899999999999999998631 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
++. .+.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~----~~~i~----~~~~ls~~ei 507 (668)
T PRK13410 490 ------------------------------------------------------REQ----SVTIQ----GASTLSEQEV 507 (668)
T ss_pred ------------------------------------------------------cee----eeeec----ccccCCHHHH
Confidence 000 11121 2356999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhch--hhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~--~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~ 734 (929)
+++++++.+|..+|+.++++.++||+||+|||++|++|.+ +.|..++++++|++|..+|+++++|||+++.+..++.|
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~ 587 (668)
T PRK13410 508 NRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAV 587 (668)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999964 36889999999999999999999999988888888999
Q ss_pred HHHHHHHHhchhhHHHHHHh
Q psy7891 735 ENKLNEINSLVVPIWERHRE 754 (929)
Q Consensus 735 ~~kl~eL~~~~~pi~~R~~e 754 (929)
.++++.|+.++.||..|+.|
T Consensus 588 ~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 588 ADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.8e-95 Score=874.09 Aligned_cols=588 Identities=26% Similarity=0.399 Sum_probs=522.5
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
++|||||||||||+||++.+| +++++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.++|+
T Consensus 41 ~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred CcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 469999999999999999887 889999999999999999996 468999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
.++.+.+++||..+... ++.+.+.+++ ..|+|+++++|+|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 120 ~~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 120 ATKKEQKILPYKIVRAS--NGDAWIEAQG-KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHHhhhccCCeEEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999999655433 4555666664 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
|++|||++++||+||+|||++|+.... . ++++|||||||||||+||+++. .| .++|++++|+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~-----~-~~~vlV~DlGgGT~DvSv~~~~------~g------~~~v~a~~gd 258 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKN-----D-GKTIAVYDLGGGTFDISILEIL------GG------VFEVKATNGN 258 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccC-----C-CcEEEEEeCCCCeEEEEEEEec------CC------eeEEEecccC
Confidence 999999999999999999999997643 2 6899999999999999999986 24 7999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeH
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 339 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR 339 (929)
..+||++||.+|++||.++|..+ .+.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||
T Consensus 259 ~~LGG~d~D~~l~~~l~~~f~~~--~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR 336 (663)
T PTZ00400 259 TSLGGEDFDQRILNYLIAEFKKQ--QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSR 336 (663)
T ss_pred CCcCHHHHHHHHHHHHHHHhhhh--cCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECH
Confidence 99999999999999999999884 455788899999999999999999999999989999887654 578999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 340 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
++|+++|++++.++..+|+++|+++++.+.+|+.|+||||+||+|+||++|+++||.++..++|||+|||+|||++|+++
T Consensus 337 ~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 337 AKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. +| .+.+||++|+++|.+++.+|++..+ .+.|.||+| +.....
T Consensus 417 ~~~--~~~~~~~dv~p~slgi~~~----~g----~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~eg-e~~~~~-- 483 (663)
T PTZ00400 417 KGE--IKDLLLLDVTPLSLGIETL----GG----VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQG-EREMAA-- 483 (663)
T ss_pred cCC--ccceEEEeccccceEEEec----CC----eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEe-cCccCC--
Confidence 975 6789999999999999886 22 2778999999999999999987644 389999999 765433
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+++.|.|+++++.+. +.|+|+|.+|.||+|+|++.+. .+.
T Consensus 484 ~n~-----~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~~~---------~~~-------------- 528 (663)
T PTZ00400 484 DNK-----LLGQFDLVGIPPAPRGV-------PQIEVTFDVDANGIMNISAVDK---------STG-------------- 528 (663)
T ss_pred cCc-----eeEEEEEcCCCCCCCCC-------ceEEEEEEECCCCCEEEEEEec---------cCC--------------
Confidence 333 46667888998765443 5799999999999999987631 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
++. .+.++ ...+|+.+++
T Consensus 529 ------------------------------------------------------~~~----~~~i~----~~~~ls~~ei 546 (663)
T PTZ00400 529 ------------------------------------------------------KKQ----EITIQ----SSGGLSDEEI 546 (663)
T ss_pred ------------------------------------------------------cEE----EEEee----ccccccHHHH
Confidence 001 12221 1256999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++++.+|..+|+.++++.+++|+||+|||.+|++|. ++..++++++|++|.+.++++++|||++ +.++|++
T Consensus 547 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~ 620 (663)
T PTZ00400 547 EKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKISDADKDELKQKITKLRSTLSSE----DVDSIKD 620 (663)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999995 3889999999999999999999999964 4789999
Q ss_pred HHHHHHhchhhHHHHH
Q psy7891 737 KLNEINSLVVPIWERH 752 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~ 752 (929)
++++|++++.++..++
T Consensus 621 k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 621 KTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.5e-94 Score=862.69 Aligned_cols=590 Identities=26% Similarity=0.387 Sum_probs=520.5
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .+.++.|.+|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++|+.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 48999999999999999999 5679999999999999999964 689999999999999999999999999999998864
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
...+++||..+... ++.+.+.+++ ..|+|+++++|+|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 82 --~~~~~~~~~~v~~~--~~~~~~~i~~-~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 --EERSRVPYTCVKGR--DDTVNVQIRG-RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HHhhcCCceEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 45678898765443 3556666665 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+.. . +.++|||||||||||+||+++. .| .++|++++|+.
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~----~-~~~vlV~DlGgGT~dvsi~~~~------~~------~~~V~at~gd~ 219 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD----Q-EQLILVFDLGGGTFDVSILQLG------DG------VFEVKATAGNN 219 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC----C-CCEEEEEEcCCCeEEEEEEEEe------CC------EEEEEEEecCC
Confidence 999999999999999999999986543 2 6889999999999999999986 23 79999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
+|||++||.+|++||.++|..+ .+.++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||+
T Consensus 220 ~LGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~ 297 (653)
T PRK13411 220 HLGGDDFDNCIVDWLVENFQQQ--EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRA 297 (653)
T ss_pred CcCHHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHH
Confidence 9999999999999999999884 445788899999999999999999999999999999887543 5789999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhh
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+|+++|+++++++..+|+++|+++++.+++|+.|+||||+||+|+||+.|+++|| ..+..++|||+|||+|||++|+++
T Consensus 298 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l 377 (653)
T PRK13411 298 KFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL 377 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998 688899999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. ++ .+.+||++|++||++++.+|.+..+ .+.|.||+| +.....
T Consensus 378 ~~~--~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~~~-- 444 (653)
T PRK13411 378 GGE--VKDLLLLDVTPLSLGIETL-----GE---VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQG-ERAMAK-- 444 (653)
T ss_pred cCC--ccceeeeecccceeeEEec-----CC---ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEe-cCcccc--
Confidence 976 7889999999999999886 22 2778999999999999999987544 389999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+.+.|.|+++++.+. +.|+|+|++|.||+|+|++.+. .+.
T Consensus 445 ~n~-----~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~d~---------~t~-------------- 489 (653)
T PRK13411 445 DNK-----SLGKFLLTGIPPAPRGV-------PQIEVSFEIDVNGILKVSAQDQ---------GTG-------------- 489 (653)
T ss_pred cCc-----eeeEEEEcCCCCCCCCC-------ccEEEEEEECCCCeEEEEEeec---------cCC--------------
Confidence 333 46677889998876544 5799999999999999997631 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
++.. +.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~~----~~i~----~~~~ls~~ei 507 (653)
T PRK13411 490 ------------------------------------------------------REQS----IRIT----NTGGLSSNEI 507 (653)
T ss_pred ------------------------------------------------------ceEe----eEEe----ccccchHHHH
Confidence 0001 1111 1245999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++++.+|..+|+.++++.+++|+||+|||.+|++|+ ++..++++++|+++.+.|+++++||++ .+++.++|++
T Consensus 508 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~--~~~~~~~~~~ 583 (653)
T PRK13411 508 ERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTD--PNISLEELKQ 583 (653)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 999999999999999999999999999999999999995 368899999999999999999999996 4578999999
Q ss_pred HHHHHHhchhhHHHHHHh
Q psy7891 737 KLNEINSLVVPIWERHRE 754 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e 754 (929)
++++|++++.++..+++.
T Consensus 584 ~~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 584 QLEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999987653
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-92 Score=851.65 Aligned_cols=587 Identities=28% Similarity=0.428 Sum_probs=520.6
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++++| .++++.|..|+|.+||+|+|. +++++||..|..++.++|.++++++|||||+. ++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 58999999999999999998 667999999999999999996 77899999999999999999999999999998 677
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++.+.+++||..+... ++...+.+++ ..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 80 ~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 80 VQKDIKLVPYKIVKAD--NGDAWVEIDG-KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHHhhcCCeEEEEcC--CCceEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 8888889998666443 4555566665 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+. . ++++|||||||||||+||+++. .+.++|++++|+.
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~-----~-~~~vlV~D~GggT~dvsv~~~~------------~~~~~vla~~gd~ 218 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK-----G-DEKILVYDLGGGTFDVSILEIG------------DGVFEVLSTNGDT 218 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC-----C-CCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecCCC
Confidence 99999999999999999999997652 2 6899999999999999999986 2379999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
.+||.+||.+|++|+.++|..++ +.++..+++++.||+.+||++|+.||.+..+.+.++.++.+ .++.+.|||+
T Consensus 219 ~lGG~d~D~~l~~~~~~~~~~~~--~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~ 296 (627)
T PRK00290 219 HLGGDDFDQRIIDYLADEFKKEN--GIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRA 296 (627)
T ss_pred CcChHHHHHHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHH
Confidence 99999999999999999999844 55788899999999999999999999999999999987653 6789999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+|+++|+.+++...+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|++++
T Consensus 297 ~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 297 KFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++||+||+++. ++ .+.+||++|+++|++++.+|++..+ .+.|.|||| +..... +
T Consensus 377 ~~--~~~~~~~d~~~~slgi~~~----~~----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~g-e~~~~~--~ 443 (627)
T PRK00290 377 GD--VKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQG-EREMAA--D 443 (627)
T ss_pred CC--ccceeeeeccceEEEEEec----CC----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEe-cccccC--c
Confidence 74 7889999999999999876 22 2678999999999999999987644 389999999 765332 3
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
+ ..|+++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .+.
T Consensus 444 ~-----~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~gil~v~a~~~---------~~~--------------- 487 (627)
T PRK00290 444 N-----KSLGRFNLTGIPPAPRGV-------PQIEVTFDIDANGIVHVSAKDK---------GTG--------------- 487 (627)
T ss_pred C-----ceEEEEEECCCCCCCCCC-------ceEEEEEEECCCceEEEEEEEc---------cCC---------------
Confidence 3 346777889998765443 5799999999999999987631 000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
+... +.+. ...+|+.++++
T Consensus 488 -----------------------------------------------------~~~~----~~i~----~~~~ls~e~i~ 506 (627)
T PRK00290 488 -----------------------------------------------------KEQS----ITIT----ASSGLSDEEIE 506 (627)
T ss_pred -----------------------------------------------------ceeE----EEec----cccccCHHHHH
Confidence 0001 1111 12469999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
++++++.+|...|+.++++.+++|+||+|||.+|++|+ ++..++++++|++|.+.|+++++|||++ +.++|+++
T Consensus 507 ~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k 580 (627)
T PRK00290 507 RMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAK 580 (627)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 5888999999999999999999999964 67899999
Q ss_pred HHHHHhchhhHHHHHHh
Q psy7891 738 LNEINSLVVPIWERHRE 754 (929)
Q Consensus 738 l~eL~~~~~pi~~R~~e 754 (929)
+++|+++++++..|+++
T Consensus 581 ~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 581 TEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988754
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.3e-92 Score=849.39 Aligned_cols=589 Identities=26% Similarity=0.408 Sum_probs=513.4
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
..|||||||||||+||++.+| .++++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.+++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 459999999999999999999 667999999999999999996 46899999999999999999999999999999876
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 182 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~ 182 (929)
++...+.+||..+... ++.+.+.+. .+..|+|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~--~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDE--NGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 4566777888655433 444555542 236899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 183 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 183 Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
||++|||++++||+||+|||++|++.+.. +.++|||||||||||+||+++. .+.++|+++.|
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~~------~~~vlV~DlGgGT~DvSi~~~~------------~~~~eVla~~g 255 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKKS------NETILVFDLGGGTFDVSVLEVG------------DGVFEVLSTSG 255 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccCC------CCEEEEEECCCCeEEEEEEEec------------CCEEEEEEecC
Confidence 99999999999999999999999976532 6799999999999999999976 23799999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeeccc----CcceEEEEe
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVT 338 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~----~~d~~~~it 338 (929)
+.+|||++||..|++|+.++|..+ .+.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++.+.||
T Consensus 256 d~~LGG~dfD~~L~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~it 333 (673)
T PLN03184 256 DTHLGGDDFDKRIVDWLASNFKKD--EGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333 (673)
T ss_pred CCccCHHHHHHHHHHHHHHHHHhh--cCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEEC
Confidence 999999999999999999999884 45578889999999999999999999999999999987653 357899999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 339 RAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 339 R~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
|++||++|.++++++..+|+++|+++++.+.+|+.|+||||+||||.||++|+++||..+..++|||||||+|||++|++
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hcCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCCh
Q psy7891 419 LSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNP 495 (929)
Q Consensus 419 ~s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~ 495 (929)
+++. ++++.+.|++||+|||++. ++ .+.+|||+|++||++++.+|.+..+ .+.|.||+| +.....
T Consensus 414 ls~~--~~~~~~~dv~p~slgi~~~----~~----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~g-e~~~~~- 481 (673)
T PLN03184 414 LAGE--VSDIVLLDVTPLSLGLETL----GG----VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQG-EREFVR- 481 (673)
T ss_pred hccC--ccceEEEecccccceEEec----CC----eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEee-cccccc-
Confidence 9974 6789999999999999986 22 2778999999999999999987643 378899999 765433
Q ss_pred hhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccC
Q psy7891 496 EQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSR 575 (929)
Q Consensus 496 ~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~ 575 (929)
++. .|++|.|.|+++++.+. +.|+|+|.+|.||+|+|++.+. .+.
T Consensus 482 -~n~-----~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~GiL~V~a~~~---------~t~------------- 526 (673)
T PLN03184 482 -DNK-----SLGSFRLDGIPPAPRGV-------PQIEVKFDIDANGILSVSATDK---------GTG------------- 526 (673)
T ss_pred -cCc-----eEEEEEEeCCCCCCCCC-------ceEEEEEEeCCCCeEEEEEEec---------CCC-------------
Confidence 333 46677888998765443 5799999999999999998641 000
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHH
Q psy7891 576 SKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQ 655 (929)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~e 655 (929)
++.. +.++ ...+|+.++
T Consensus 527 -------------------------------------------------------~~~~----~~i~----~~~~ls~ee 543 (673)
T PLN03184 527 -------------------------------------------------------KKQD----ITIT----GASTLPKDE 543 (673)
T ss_pred -------------------------------------------------------eEEE----EEec----ccccccHHH
Confidence 0011 1111 224699999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q psy7891 656 VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLE 735 (929)
Q Consensus 656 i~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~ 735 (929)
++++++++.+|..+|+.++++.+++|+||+|||++|++|. ++.+++++++|++|.+.|+++++|||.+ +.+.++
T Consensus 544 i~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 544 VERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 9999999999999999999999999999999999999994 4888999999999999999999999964 456888
Q ss_pred HHHHHHHhchhhHHHHHHh
Q psy7891 736 NKLNEINSLVVPIWERHRE 754 (929)
Q Consensus 736 ~kl~eL~~~~~pi~~R~~e 754 (929)
+++++|.+.+.++..+++.
T Consensus 618 ~~~~~l~~~l~~l~~~~~~ 636 (673)
T PLN03184 618 DAMAALNQEVMQIGQSLYN 636 (673)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888887776543
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=2.6e-92 Score=839.43 Aligned_cols=589 Identities=25% Similarity=0.369 Sum_probs=521.2
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
..+||||||||||+||++.+| +++++.|..|.|.+||+|+|.++++++|..|..++.++|.++++++|||||+.++|+.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 469999999999999999988 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++...+.+||..+... ++...+...++..|+|+++.+++|++|+..|+.++|.++.++|||||+||++.||+++++||
T Consensus 106 v~~~~~~~p~~vv~~~--~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAG--NGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHhhccCcEEEEEcC--CCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 9999999999765433 33445555556789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++... . ++++|||||||||||+||+++. .| .++|+++.||.
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~-----~-~~~vlV~DlGGGT~DvSil~~~------~g------~~~V~at~Gd~ 245 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKT-----K-DSLIAVYDLGGGTFDISVLEIA------GG------VFEVKATNGDT 245 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCC-----C-CCEEEEEECCCCeEEEEEEEEe------CC------EEEEEEecCCC
Confidence 99999999999999999999997643 2 6899999999999999999986 24 79999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
+|||++||.+|++|+.++|.. +++.|+..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||+
T Consensus 246 ~LGG~DfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~ 323 (657)
T PTZ00186 246 HLGGEDFDLALSDYILEEFRK--TSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRS 323 (657)
T ss_pred CCCchhHHHHHHHHHHHHHhh--hcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHH
Confidence 999999999999999999998 4456888899999999999999999999999999999876542 4689999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+++++|+++++.+.+|+.|+||||+||||.||++|+++||..+..++|||||||+|||++|++++
T Consensus 324 efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 324 KFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLR 403 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998788999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++||+|||++. +| .+.+||++|++||++++.+|++..+ .+.|.|||| ++.... +
T Consensus 404 ~~--~~~~~l~Dv~p~slgie~~----~g----~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qG-e~~~~~--~ 470 (657)
T PTZ00186 404 GD--VKGLVLLDVTPLSLGIETL----GG----VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQG-EREMAA--D 470 (657)
T ss_pred cc--cCceEEEeeccccccceec----CC----EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEe-cccccc--c
Confidence 85 6789999999999999986 22 3779999999999999999988754 389999999 876443 5
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
|..+ +++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .|.
T Consensus 471 n~~l-----g~~~l~~ip~~~~G~-------~~I~Vtf~iD~nGiL~V~a~d~---------~tg--------------- 514 (657)
T PTZ00186 471 NQMM-----GQFDLVGIPPAPRGV-------PQIEVTFDIDANGICHVTAKDK---------ATG--------------- 514 (657)
T ss_pred cccc-----ceEEEcCCCCCCCCC-------CcEEEEEEEcCCCEEEEEEEEc---------cCC---------------
Confidence 5544 556788999876655 6899999999999999998752 110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
+... +.+. ....|++++++
T Consensus 515 -----------------------------------------------------~~~~----~~i~----~~~~ls~~~i~ 533 (657)
T PTZ00186 515 -----------------------------------------------------KTQN----ITIT----ANGGLSKEQIE 533 (657)
T ss_pred -----------------------------------------------------cEEE----EEec----cCccCCHHHHH
Confidence 0000 1111 22359999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
++.+.+..+..+|+.++++.+++|.+|+++|.++..+.+ . ..+++++++.+...+...++||. +.+.+.+.|+++
T Consensus 534 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 608 (657)
T PTZ00186 534 QMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEKENVKTLVAELRKAME--NPNVAKDDLAAA 608 (657)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHH
Confidence 999999999999999999999999999999999999953 2 46899999999999999999997 334567899999
Q ss_pred HHHHHhchhhHHHH
Q psy7891 738 LNEINSLVVPIWER 751 (929)
Q Consensus 738 l~eL~~~~~pi~~R 751 (929)
+++|++++.++..+
T Consensus 609 ~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 609 TDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.4e-91 Score=839.56 Aligned_cols=585 Identities=29% Similarity=0.439 Sum_probs=515.9
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++ .
T Consensus 1 ~viGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~ 77 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--E 77 (595)
T ss_pred CEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--H
Confidence 37999999999999999999 5679999999999999999975 489999999999999999999999999999983 4
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++.+.+++||. +..+ ++.+.+.+++ ..|+|+++++++|++|++.++.++|.++.++|||||+||++.||+++++||
T Consensus 78 ~~~~~~~~~~~-v~~~--~~~~~~~v~~-~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 78 VTEEAKRVPYK-VVGD--GGDVRVKVDG-KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHHhhcCCee-EEcC--CCceEEEECC-EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 77778889987 4332 4567777765 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+.. . +.++|||||||||||+||+++. .+.++|++++|+.
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~----~-~~~vlV~D~Gggt~dvsv~~~~------------~~~~~v~~~~gd~ 216 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK----K-DEKILVFDLGGGTFDVSILEIG------------DGVFEVLSTAGDT 216 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC----C-CcEEEEEECCCCeEEEEEEEec------------CCeEEEEEecCCc
Confidence 999999999999999999999986532 2 7899999999999999999986 2379999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
.+||.+||..|++||.++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.++++..+ .++.+.|||+
T Consensus 217 ~lGG~d~D~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~ 294 (595)
T TIGR02350 217 HLGGDDFDQRIIDWLADEFKKEE--GIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRA 294 (595)
T ss_pred ccCchhHHHHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHH
Confidence 99999999999999999999854 56888899999999999999999999999999999887643 5789999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|++++
T Consensus 295 ~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~ 374 (595)
T TIGR02350 295 KFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLK 374 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++||+||+++. +| .+.+||++|+++|++++.+|++..+ .+.|.||+| +..... +
T Consensus 375 ~~--~~~~~~~d~~~~~igi~~~----~~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~g-e~~~~~--~ 441 (595)
T TIGR02350 375 GD--VKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQG-ERPMAA--D 441 (595)
T ss_pred CC--cccceeeecccceeEEEec----CC----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEee-cccccc--c
Confidence 86 7889999999999999886 23 2678999999999999999987643 378999999 765332 3
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
+ ..|+.+.|.|+++++.+. ..|+|+|++|.||+|+|++.+. .+.
T Consensus 442 ~-----~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~G~l~v~~~~~---------~~~--------------- 485 (595)
T TIGR02350 442 N-----KSLGRFELTGIPPAPRGV-------PQIEVTFDIDANGILHVSAKDK---------GTG--------------- 485 (595)
T ss_pred C-----cEeEEEEECCCCCCCCCC-------ceEEEEEEEcCCCeEEEEEEEc---------cCC---------------
Confidence 3 346677889998765443 5799999999999999998641 000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
++.. +.++ ...+|+.++++
T Consensus 486 -----------------------------------------------------~~~~----~~i~----~~~~ls~~~~~ 504 (595)
T TIGR02350 486 -----------------------------------------------------KEQS----ITIT----ASSGLSEEEIE 504 (595)
T ss_pred -----------------------------------------------------ceEE----EEec----cccccCHHHHH
Confidence 0000 1111 12469999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
++++++.+|...|+.++++.+++|.||+|||.+|++|+ ++..++++++|++|.+.++++++|||++ +..+|+++
T Consensus 505 ~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~ 578 (595)
T TIGR02350 505 RMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAK 578 (595)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 3688999999999999999999999953 56799999
Q ss_pred HHHHHhchhhHHHHH
Q psy7891 738 LNEINSLVVPIWERH 752 (929)
Q Consensus 738 l~eL~~~~~pi~~R~ 752 (929)
+++|+++++++..++
T Consensus 579 ~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 579 TEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=3.8e-91 Score=835.18 Aligned_cols=588 Identities=28% Similarity=0.402 Sum_probs=513.9
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 58999999999999999999 6679999999999999999964 6799999999999999999999999999999865
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
+....+.+||...... ++.+.+... .+..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDS--NGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECC--CCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5556677887554332 344555442 2368999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
|++|||++++||+||+|||++|+.... . +.++|||||||||||+||+++. .+.++|++++|+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~-----~-~~~vlV~DlGgGT~DvSv~~~~------------~~~~~vla~~gd 219 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK-----N-NETILVFDLGGGTFDVSILEVG------------DGVFEVLSTSGD 219 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC-----C-CCEEEEEEcCCCeEEEEEEEEc------------CCEEEEEEEecC
Confidence 999999999999999999999997643 2 6789999999999999999975 237999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeH
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 339 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR 339 (929)
..+||++||..|++|+.++|..++ +.++..+++++.+|+.+||++|+.||.+.++.+.++++.++ .++...|||
T Consensus 220 ~~lGG~d~D~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (621)
T CHL00094 220 THLGGDDFDKKIVNWLIKEFKKKE--GIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTR 297 (621)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcH
Confidence 999999999999999999999844 45788899999999999999999999999999999887642 578899999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 340 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
++||++|.++++++..+|+++|+++++.+.+|+.|+|+||+||+|.|++.|+++||..+..++|||+|||+|||++|+++
T Consensus 298 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 298 AKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEecc---CceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~---~~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. +| .+.+|||+|++||++++.+|++.. ..+.|.||+| +.....
T Consensus 378 s~~--~~~~~~~d~~~~~lgi~~~----~~----~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~g-e~~~~~-- 444 (621)
T CHL00094 378 AGE--VKDILLLDVTPLSLGVETL----GG----VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQG-ERELAK-- 444 (621)
T ss_pred cCC--ccceeeeeeeceeeeeecc----CC----EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEee-ccccCC--
Confidence 874 6789999999999999876 22 377999999999999999998753 3589999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+.|.|.|+++.+.+. +.|+|+|++|.||+|+|++.+. .+.
T Consensus 445 ~n~-----~lg~~~i~~~~~~~~g~-------~~i~v~f~id~~Gil~v~~~~~---------~t~-------------- 489 (621)
T CHL00094 445 DNK-----SLGTFRLDGIPPAPRGV-------PQIEVTFDIDANGILSVTAKDK---------GTG-------------- 489 (621)
T ss_pred CCC-----EEEEEEEeCCCCCCCCC-------CcEEEEEEECCCCeEEEEEeec---------cCC--------------
Confidence 333 46677888998765443 5799999999999999998641 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
+.. .+.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~----~~~i~----~~~~ls~~~i 507 (621)
T CHL00094 490 ------------------------------------------------------KEQ----SITIQ----GASTLPKDEV 507 (621)
T ss_pred ------------------------------------------------------cee----eeeec----cchhccHHHH
Confidence 000 01111 2346999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++++.+|..+|+.++++.+++|.||+|||.+|++|+ ++..++++++|++|.+.++++++|||++ ..++|++
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~ 581 (621)
T CHL00094 508 ERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKDKISEEKKEKIENLIKKLRQALQND----NYESIKS 581 (621)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999995 3888999999999999999999999965 3579999
Q ss_pred HHHHHHhchhhHHHHHHh
Q psy7891 737 KLNEINSLVVPIWERHRE 754 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e 754 (929)
++++|+++++++..+++.
T Consensus 582 ~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 582 LLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999976544
No 13
>KOG0101|consensus
Probab=100.00 E-value=6.1e-91 Score=787.93 Aligned_cols=605 Identities=30% Similarity=0.458 Sum_probs=546.0
Q ss_pred ccCCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCC
Q psy7891 22 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 101 (929)
Q Consensus 22 ~~~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~ 101 (929)
...+.++|||||||++||+++..| .++++.|.+|.|.+||+|+|.+.++++|.+|..+..++|.|+++++||++|+.++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 345789999999999999999977 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCc-eeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHH
Q psy7891 102 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDN-ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 180 (929)
Q Consensus 102 d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~-~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al 180 (929)
|+.++..+++|||......+....+.....++ +.|+|+++.+|+|.+++..++.++|..+.++|+|||+||++.||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 99999999999997764444445555544443 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEE
Q psy7891 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260 (929)
Q Consensus 181 ~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~ 260 (929)
.+|+.+|||+++++|+||+||||+|++.+.. .. ..+|||+|+||||||++++.+. .| .+.|+++
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~---~~-~~~VlI~DlGggtfdvs~l~i~------gG------~~~vkat 226 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKV---LG-ERNVLIFDLGGGTFDVSVLSLE------GG------IFEVKAT 226 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccc---cc-eeeEEEEEcCCCceeeeeEEec------cc------hhhhhhh
Confidence 9999999999999999999999999977652 23 7899999999999999999986 23 7899999
Q ss_pred ecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHH
Q psy7891 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRA 340 (929)
Q Consensus 261 ~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ 340 (929)
.+|.++||.+||+.|++|+..+|.. +++.|+..|+|+++||+.+||++|+.||....+.+.|++|+++.||...|||.
T Consensus 227 ~gd~~lGGedf~~~l~~h~~~ef~~--k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itra 304 (620)
T KOG0101|consen 227 AGDTHLGGEDFDNKLVNHFAAEFKR--KAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRA 304 (620)
T ss_pred cccccccchhhhHHHHHHHHHHHHH--hhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehh
Confidence 9999999999999999999999999 55579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhh
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+||.+|.+++.++..++..+|++++++..+|+.|+||||++|+|.+|..++++|+ +.+..++||||+||+|||++||.+
T Consensus 305 rfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 305 RFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred cCC--cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCC
Q psy7891 420 STG--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLN 494 (929)
Q Consensus 420 s~~--f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~ 494 (929)
++. -.+.++.+.|+.|.++||+.. ++ .+.++|++++.+|++++.+|+++.++ +.|.||+| ++....
T Consensus 385 ~g~~~~~~~~l~lid~~pl~~gve~a-----~~---~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEg-er~~~k 455 (620)
T KOG0101|consen 385 SGDKSLNIQDLLLIDVAPLSLGVETA-----GG---VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEG-ERAMTK 455 (620)
T ss_pred cCCccccccceeeeeccccccccccc-----CC---cceeeeecccccceeeeeeeeeecCCCCceeEEEEec-cccccc
Confidence 874 235789999999999999876 33 38899999999999999999988654 89999999 865333
Q ss_pred hhhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCcccccccccccccc
Q psy7891 495 PEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFS 574 (929)
Q Consensus 495 ~~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~ 574 (929)
++..+ +.|.+.||+++++++ +.|+++|.+|.+|+|.|++++. +|+.
T Consensus 456 --dn~~l-----g~feL~gippaprgv-------p~IevtfdiD~ngiL~Vta~d~---------stgK----------- 501 (620)
T KOG0101|consen 456 --DNNLL-----GKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVTAVDK---------STGK----------- 501 (620)
T ss_pred --ccccc-----ceeeecCCCccccCC-------cceeEEEecCCCcEEEEeeccc---------cCCc-----------
Confidence 55555 456889999998887 7999999999999999999852 2110
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHH
Q psy7891 575 RSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEK 654 (929)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ 654 (929)
..+ ++ ..++...||.+
T Consensus 502 -------------------------------------------------------~~~--------i~-i~n~~grls~~ 517 (620)
T KOG0101|consen 502 -------------------------------------------------------ENK--------IT-ITNDKGRLSKE 517 (620)
T ss_pred -------------------------------------------------------cce--------EE-Eecccceeehh
Confidence 001 11 44567789999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy7891 655 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734 (929)
Q Consensus 655 ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~ 734 (929)
+|++|....+.+..+|...+.+..++|.||+|+|+++..++++. +.++++++.++..+|.++..||+- +..+.+++|
T Consensus 518 ~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~--~~i~~~~~~~~~~~~~~~i~wl~~-~~~~~~~e~ 594 (620)
T KOG0101|consen 518 EIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK--GKINEEDKQKILDKCNEVINWLDK-NQLAEKEEF 594 (620)
T ss_pred hhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc--cccChhhhhhHHHHHHHHHHHhhh-cccccccHH
Confidence 99999999999999999999999999999999999999997544 899999999999999999999985 456679999
Q ss_pred HHHHHHHHhchhhHHHHHHhh
Q psy7891 735 ENKLNEINSLVVPIWERHREH 755 (929)
Q Consensus 735 ~~kl~eL~~~~~pi~~R~~e~ 755 (929)
++|.++|+..|.||+.+++..
T Consensus 595 e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 595 EHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHhhccHHHHhhhcc
Confidence 999999999999999998765
No 14
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.6e-88 Score=807.40 Aligned_cols=577 Identities=24% Similarity=0.344 Sum_probs=505.7
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 105 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v 105 (929)
+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ ++++||..|..++.++|.++++++|||||+.+.|..
T Consensus 1 ~iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK- 78 (599)
T ss_pred CEEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh-
Confidence 5899999999999999998 7789999999999999999975 489999999999999999999999999999987743
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHH
Q psy7891 106 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 185 (929)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~ 185 (929)
. .+.+||..... .++.+.+.+.++ .++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 79 -~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 -T-FSILPYRFVDG--PGEMVRLRTVQG-TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred -h-cccCCEEEEEc--CCCceEEEeCCC-EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 55677754322 245677776654 799999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCC
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~ 265 (929)
+|||++++||+||+|||++|++.+. . +.++|||||||||||+||+++. .| .++|++++|+..
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~-----~-~~~vlV~DlGgGT~DvSi~~~~------~~------~~~vla~~gd~~ 215 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA-----S-EGIYAVYDLGGGTFDVSILKLT------KG------VFEVLATGGDSA 215 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC-----C-CCEEEEEEcCCCeEEEEEEEEc------CC------eEEEEEEcCCCC
Confidence 9999999999999999999997653 2 6899999999999999999986 23 799999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHH
Q psy7891 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEAL 345 (929)
Q Consensus 266 lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l 345 (929)
+||++||..|++||.+++.. +...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++
T Consensus 216 lGG~d~D~~l~~~l~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l 287 (599)
T TIGR01991 216 LGGDDFDHALAKWILKQLGI------SADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEAL 287 (599)
T ss_pred CCHHHHHHHHHHHHHHhhCC------CCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHH
Confidence 99999999999999976532 44568999999999999999999999988888875 78899999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCccc
Q psy7891 346 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKV 425 (929)
Q Consensus 346 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f~~ 425 (929)
|+++++++..+|.++|+++++.+.+|+.|+||||+||+|+|+++|+++||..+..++|||+|||+|||++|+++++.++.
T Consensus 288 ~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~ 367 (599)
T TIGR01991 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIG 367 (599)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999878889999999999999999999999888
Q ss_pred ceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhcccc
Q psy7891 426 KKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLG 502 (929)
Q Consensus 426 k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g 502 (929)
+++.+.|++||+||+++. +| .+.+||++|+++|++++..|++..++ +.|.||+| +..... +|.
T Consensus 368 ~~~~l~dv~p~slgi~~~----~g----~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qG-e~~~~~--~n~--- 433 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETM----GG----LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQG-ERELVE--DCR--- 433 (599)
T ss_pred CceEEEEeeeeeeEEEec----CC----EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEee-cccccc--cCc---
Confidence 999999999999999986 23 27799999999999999999876443 88999999 765332 343
Q ss_pred ceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCC
Q psy7891 503 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 582 (929)
Q Consensus 503 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 582 (929)
.|+.+.|.|+++++.+. .+|+|+|++|.||+|+|++.+. .+.
T Consensus 434 --~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~V~a~~~---------~t~-------------------- 475 (599)
T TIGR01991 434 --SLARFELRGIPPMVAGA-------ARIRVTFQVDADGLLTVSAQEQ---------STG-------------------- 475 (599)
T ss_pred --eEEEEEEcCCCCCCCCC-------CcEEEEEEECCCCeEEEEEEEC---------CCC--------------------
Confidence 46677888999875544 6899999999999999998631 100
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHH
Q psy7891 583 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 662 (929)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~ 662 (929)
++.. +.+. ....|+.++++++.+.
T Consensus 476 ------------------------------------------------~~~~----~~i~----~~~~l~~~~i~~~~~~ 499 (599)
T TIGR01991 476 ------------------------------------------------VEQS----IQVK----PSYGLSDEEIERMLKD 499 (599)
T ss_pred ------------------------------------------------cEEE----Eecc----cccCCCHHHHHHHHHH
Confidence 0001 1111 1235999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy7891 663 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 742 (929)
Q Consensus 663 l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~ 742 (929)
+.++..+|+.++++.+++|.+|+|+|.++..+. ++..++++++|+++...+++.++||+++ +...+++++++|+
T Consensus 500 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~ 573 (599)
T TIGR01991 500 SFKHAEEDMYARALAEQKVEAERILEALQAALA--ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALE 573 (599)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999984 3556899999999999999999999854 4679999999999
Q ss_pred hchhhHHH
Q psy7891 743 SLVVPIWE 750 (929)
Q Consensus 743 ~~~~pi~~ 750 (929)
+++.++..
T Consensus 574 ~~~~~~~~ 581 (599)
T TIGR01991 574 EATDNFAA 581 (599)
T ss_pred HHHHHHHH
Confidence 99988775
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=4.6e-88 Score=816.92 Aligned_cols=595 Identities=34% Similarity=0.538 Sum_probs=512.5
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHHH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 106 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v~ 106 (929)
||||||||+||+||++.+| .++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|+|||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 7999999999999999988 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHH
Q psy7891 107 LFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 185 (929)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~v~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~ 185 (929)
.+.+.+||......++...+.+...+ ...++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999998765543433334444333 35899999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCC
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~ 265 (929)
+|||++++||+||+|||++|++.+.. . +.++|||||||||+|+|++++. .| .++++++.++..
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~----~-~~~vlv~D~Gggt~dvs~~~~~------~~------~~~v~~~~~~~~ 222 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD----K-GKTVLVVDFGGGTFDVSVVEFS------NG------QFEVLATAGDNN 222 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS----S-EEEEEEEEEESSEEEEEEEEEE------TT------EEEEEEEEEETT
T ss_pred ccccccceeecccccccccccccccc----c-ccceeccccccceEeeeehhcc------cc------cccccccccccc
Confidence 99999999999999999999987655 2 7899999999999999999987 24 799999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC--CCceeEEEeeccc-CcceEEEEeHHHH
Q psy7891 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA--NNEHFAQIEGLID-EIDFKLLVTRAEF 342 (929)
Q Consensus 266 lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~--~~~~~v~ie~l~~-~~d~~~~itR~ef 342 (929)
+||++||.+|++|+.++|..++ +.++..+++++.+|+.+||++|+.||. +.+..+.++++.+ |.|+.+.|||++|
T Consensus 223 lGG~~~D~~l~~~~~~~~~~~~--~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~f 300 (602)
T PF00012_consen 223 LGGRDFDEALAEYLLEKFKKKY--KIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEF 300 (602)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH--SS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred cccceecceeeccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 9999999999999999999844 458888999999999999999999999 6777788888887 8999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
+++|.++++++..+|+++|+.+++...+|+.|+||||+||+|+||+.|++.||..+..++|||+|||+|||++|+.+++.
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 380 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGS 380 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTS
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhhhc
Q psy7891 423 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIA 499 (929)
Q Consensus 423 f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~ 499 (929)
|+++++.+.|++||+|||.+. ++. +.+++++|+++|..++..|.+..+ +|.|.|||| +....+ ++
T Consensus 381 ~~~~~~~~~d~~~~~~~i~~~----~~~----~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g-~~~~~~--~~- 448 (602)
T PF00012_consen 381 FRVKDIKIIDVTPFSIGIEVS----NGK----FSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEG-ESSSFE--DN- 448 (602)
T ss_dssp CSSTSSCESEBESSEEEEEET----TTE----EEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG--GS-
T ss_pred ccccccccccccccccccccc----ccc----cccccccccccccccccccchhccccccccceeeec-cccccc--cc-
Confidence 999999999999999999887 232 678999999999998888876533 499999999 654332 33
Q ss_pred cccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCC
Q psy7891 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTD 579 (929)
Q Consensus 500 ~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 579 (929)
..|+++.|.++++.+.+. +.|+|+|++|.+|+|+|.++++..+.
T Consensus 449 ----~~ig~~~i~~i~~~~~g~-------~~i~v~f~ld~~Gil~V~~~~~~~~~------------------------- 492 (602)
T PF00012_consen 449 ----KKIGSYTISGIPPAPKGK-------PKIKVTFELDENGILSVEAAEVETGK------------------------- 492 (602)
T ss_dssp ----EEEEEEEEES-SSSSTTS-------SEEEEEEEEETTSEEEEEEEETTTTE-------------------------
T ss_pred ----cccccccccccccccccc-------cceeeEEeeeeeeehhhhhccccccc-------------------------
Confidence 456777888888765443 68999999999999999988521000
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHH
Q psy7891 580 ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKS 659 (929)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~ 659 (929)
... +.+ . ....++.++++++
T Consensus 493 ----------------------------------------------------~~~----~~v---~-~~~~~~~~~~~~~ 512 (602)
T PF00012_consen 493 ----------------------------------------------------EEE----VTV---K-KKETLSKEEIEEL 512 (602)
T ss_dssp ----------------------------------------------------EEE----EEE---E-SSSSSCHHHHHHH
T ss_pred ----------------------------------------------------ccc----ccc---c-ccccccccccccc
Confidence 000 000 1 1123889999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy7891 660 LSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLN 739 (929)
Q Consensus 660 ~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~ 739 (929)
+++++++...|+.++++.+++|+||+|+|++|+.|++. .++++++++ .++++++.+||+++.++++.++|++|++
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~ 587 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLE 587 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999643 667777777 8899999999999888899999999999
Q ss_pred HHHhchhhHHHHHHh
Q psy7891 740 EINSLVVPIWERHRE 754 (929)
Q Consensus 740 eL~~~~~pi~~R~~e 754 (929)
+|+++.+||..|+++
T Consensus 588 ~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 588 ELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999863
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.1e-87 Score=799.10 Aligned_cols=578 Identities=23% Similarity=0.343 Sum_probs=502.5
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
..+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.+++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 368999999999999999999 67899999999999999999888899999999999999999999999999999876
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++.....+||...... .|.+.+.+.++ .++|+++++++|++|++.++.++|.++.++|||||+||++.||+++++||
T Consensus 96 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~-~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 96 IQQRYPHLPYQFVASE--NGMPLIRTAQG-LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhhcCCeEEEecC--CCceEEEecCC-eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 3444566777433322 45566666553 79999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+. . ++++||||+||||||+||+++. .| .++|++++||.
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~-----~-~~~vlV~DlGGGT~DvSv~~~~------~~------~~evlat~gd~ 234 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSG-----Q-EGVIAVYDLGGGTFDISILRLS------KG------VFEVLATGGDS 234 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccC-----C-CCEEEEEECCCCeEEEEEEEee------CC------EEEEEEecCCC
Confidence 99999999999999999999997643 2 6899999999999999999986 23 79999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 344 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~ 344 (929)
++||.+||.+|++|+.++|.. +...+++++.+|+.+||++|+.||.+..+.+.+..+ ...|||++|++
T Consensus 235 ~lGG~d~D~~l~~~~~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~ 302 (616)
T PRK05183 235 ALGGDDFDHLLADWILEQAGL------SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNA 302 (616)
T ss_pred CcCHHHHHHHHHHHHHHHcCC------CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHH
Confidence 999999999999999998754 334688999999999999999999999888887532 23599999999
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCcc
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFK 424 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f~ 424 (929)
+|+++++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|+++++.+.
T Consensus 303 l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~ 382 (616)
T PRK05183 303 LIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKP 382 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999977778999999999999999999999888
Q ss_pred cceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhhhccc
Q psy7891 425 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIAML 501 (929)
Q Consensus 425 ~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~~~ 501 (929)
++++.+.|++||+|||++. +| .+.+|||+|++||++++..|++..+ .+.|.||+| +..... ++.
T Consensus 383 ~~~~~l~dv~p~slgi~~~----~g----~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qG-e~~~~~--~n~-- 449 (616)
T PRK05183 383 DSDMLLLDVIPLSLGLETM----GG----LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQG-ERELVA--DCR-- 449 (616)
T ss_pred cCceEEEeeccccccceec----CC----eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecc-cccccc--ccc--
Confidence 8899999999999999876 22 2778999999999999999987544 389999999 765432 333
Q ss_pred cceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCC
Q psy7891 502 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDEN 581 (929)
Q Consensus 502 g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 581 (929)
.|+++.|.|+++.+++. ..|+|+|++|.||+|+|++.+. .+.
T Consensus 450 ---~lg~~~i~~i~~~~~g~-------~~i~v~f~~d~~Gil~V~a~~~---------~~~------------------- 491 (616)
T PRK05183 450 ---SLARFELRGIPPMAAGA-------ARIRVTFQVDADGLLSVTAMEK---------STG------------------- 491 (616)
T ss_pred ---EEEEEEeCCCCCCCCCC-------ccEEEEEEECCCCeEEEEEEEc---------CCC-------------------
Confidence 46777899999875543 5899999999999999997641 100
Q ss_pred CCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHH
Q psy7891 582 EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLS 661 (929)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~ 661 (929)
+... +.+. ....|+.++++++++
T Consensus 492 -------------------------------------------------~~~~----~~i~----~~~~ls~~~i~~~~~ 514 (616)
T PRK05183 492 -------------------------------------------------VEAS----IQVK----PSYGLTDDEIARMLK 514 (616)
T ss_pred -------------------------------------------------cEEE----eccc----ccccCCHHHHHHHHH
Confidence 0000 1111 113599999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy7891 662 KLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEI 741 (929)
Q Consensus 662 ~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL 741 (929)
.+.++..+|+..+++.+++|++|+|+|.++..+.+ ....+++++|+.+...+++.++||..+ +.+.|++++++|
T Consensus 515 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l 588 (616)
T PRK05183 515 DSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKAL 588 (616)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Confidence 99999999999999999999999999999999952 346789999999999999999999742 678999999999
Q ss_pred HhchhhHHHHH
Q psy7891 742 NSLVVPIWERH 752 (929)
Q Consensus 742 ~~~~~pi~~R~ 752 (929)
++++.++..+.
T Consensus 589 ~~~~~~~~~~~ 599 (616)
T PRK05183 589 DKATQEFAARR 599 (616)
T ss_pred HHHHHHHHHHH
Confidence 99999988643
No 17
>KOG0102|consensus
Probab=100.00 E-value=8.2e-85 Score=705.67 Aligned_cols=593 Identities=27% Similarity=0.401 Sum_probs=530.2
Q ss_pred cCCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEE-ecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCC
Q psy7891 23 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 101 (929)
Q Consensus 23 ~~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~-~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~ 101 (929)
..-.|+|||+||||||++++.++ ...++.|.+|.|.+||+|+| .++++++|..|+.++..||.|+|+.-|||||+.|+
T Consensus 25 ~~~~vigidlgttnS~va~meg~-~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGK-KPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCC-CceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 44679999999999999999988 55699999999999999999 67799999999999999999999999999999999
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 102 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 102 d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
||.++.+.+..||..+-. .+|-..+.. .+..|+|.++.+++|++++..|+.+++..+..+|+|||+||++.||+++.
T Consensus 104 d~evq~~~k~vpyKiVk~--~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTk 180 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKA--SNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATK 180 (640)
T ss_pred CHHHHHHHHhCCcceEEc--cCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhH
Confidence 999999999999977763 356566666 55899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+|.++||+++++.||||+|||++|++.+.. ...++|||+||||||++|..+. .| .|+|.++.
T Consensus 181 dag~iagl~vlrvineptaaalaygld~k~------~g~iaV~dLgggtfdisilei~------~g------vfevksTn 242 (640)
T KOG0102|consen 181 DAGQIAGLNVLRVINEPTAAALAYGLDKKE------DGVIAVFDLGGGTFDISILEIE------DG------VFEVKSTN 242 (640)
T ss_pred hhhhhccceeeccCCccchhHHhhcccccC------CCceEEEEcCCceeeeeeehhc------cc------eeEEEecc
Confidence 999999999999999999999999998754 5889999999999999999976 24 89999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEE
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLV 337 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~i 337 (929)
||.++||.+||..+++|+...|.. ..+.|+..+.+++.||+.++||+|..||....+.+.++.+..+ ..+++++
T Consensus 243 gdtflggedfd~~~~~~~v~~fk~--~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~ 320 (640)
T KOG0102|consen 243 GDTHLGGEDFDNALVRFIVSEFKK--EEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIEL 320 (640)
T ss_pred CccccChhHHHHHHHHHHHHhhhc--ccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEee
Confidence 999999999999999999999988 6678999999999999999999999999999999999887766 7789999
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa 417 (929)
||.+||+++.++++|.+.|+.++|++|++..+||+.|+|+||++|+|.|++.+.++||+..+..+||||+||.|||+++.
T Consensus 321 tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqgg 400 (640)
T KOG0102|consen 321 TRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGG 400 (640)
T ss_pred cHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCC
Q psy7891 418 DLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLN 494 (929)
Q Consensus 418 ~~s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~ 494 (929)
.+++. |+++.+.|++|+++||+.- |++ +..|+++++.||++++..|.+..+ .+.|.|++| ++....
T Consensus 401 vl~ge--VkdvlLLdVtpLsLgietl-----ggv---ft~Li~rnttIptkksqvfstaadgqt~V~ikv~qg-ere~~~ 469 (640)
T KOG0102|consen 401 VLSGE--VKDVLLLDVTPLSLGIETL-----GGV---FTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQG-EREMVN 469 (640)
T ss_pred hhhcc--ccceeeeecchHHHHHHhh-----hhh---heecccCCcccCchhhhheeecccCCceEEEEeeec-hhhhhc
Confidence 99987 8999999999999999876 433 788999999999999999988644 389999999 887655
Q ss_pred hhhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCcccccccccccccc
Q psy7891 495 PEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFS 574 (929)
Q Consensus 495 ~~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~ 574 (929)
+|.++|+ |.+.||+++|+++ ++|.|+|.+|.|||++|++.+ +.+.
T Consensus 470 --dnk~lG~-----f~l~gipp~pRgv-------pqieVtfDIdanGI~~vsA~d---------k~t~------------ 514 (640)
T KOG0102|consen 470 --DNKLLGS-----FILQGIPPAPRGV-------PQIEVTFDIDANGIGTVSAKD---------KGTG------------ 514 (640)
T ss_pred --cCcccce-----eeecccCCCCCCC-------CceeEEEeecCCceeeeehhh---------cccC------------
Confidence 7777775 4889999999998 799999999999999999874 1110
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHH
Q psy7891 575 RSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEK 654 (929)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ 654 (929)
|.+. +. ......||++
T Consensus 515 ------------------------------------------------------K~qs------i~----i~~sggLs~~ 530 (640)
T KOG0102|consen 515 ------------------------------------------------------KSQS------IT----IASSGGLSKD 530 (640)
T ss_pred ------------------------------------------------------Cccc------eE----EeecCCCCHH
Confidence 0011 11 1133569999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy7891 655 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734 (929)
Q Consensus 655 ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~ 734 (929)
+++.|.+..+.+...|+.++++.+..|..++++|+....+ .+|.+..+.++.++|+..+....+.+-.- ...+.+++
T Consensus 531 ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~--~~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~ 607 (640)
T KOG0102|consen 531 EIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSL--KEFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEI 607 (640)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhh--hhhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhH
Confidence 9999999999999999999999999999999999999988 57888899999999999999999888521 22334777
Q ss_pred HHHHHHHHhchhhHHHHH
Q psy7891 735 ENKLNEINSLVVPIWERH 752 (929)
Q Consensus 735 ~~kl~eL~~~~~pi~~R~ 752 (929)
..+...|+....|++.-+
T Consensus 608 k~~~~~l~q~~lkl~es~ 625 (640)
T KOG0102|consen 608 KKAMSALQQASLKLFESA 625 (640)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 777777777777766533
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.3e-82 Score=746.44 Aligned_cols=546 Identities=21% Similarity=0.345 Sum_probs=460.0
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCC---
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS--- 102 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d--- 102 (929)
.+||||||||||+||++.+| .++++.|..|+|.+||+|+|.++++++|..| +++++|||||+.+++
T Consensus 20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 58999999999999999887 8899999999999999999988889999987 799999999999876
Q ss_pred -HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 103 -PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 103 -~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
+.+....+++ ... ..+.+.+.+++ ..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 89 ~~~~~~~~k~~-----~~~-~~~~~~~~~~~-~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 89 TPALFSLVKDY-----LDV-NSSELKLNFAN-KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred chhhHhhhhhe-----eec-CCCeeEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 2222111111 111 12334555554 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+||++|||++++||+||+|||++|++.... ..++||||+||||||+||+++. .| .++|++++
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSi~~~~------~~------~~~V~at~ 223 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ------KGCYLVYDLGGGTFDVSILNIQ------EG------IFQVIATN 223 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccCC------CCEEEEEECCCCcEEEEEEEEe------CC------eEEEEEEc
Confidence 999999999999999999999999976532 5789999999999999999986 23 79999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHH
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 341 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~e 341 (929)
||.++||++||.+|++|+..+|.. ..+.+ .++.||++|+.||.+..... ..++|||++
T Consensus 224 gd~~lGG~d~D~~l~~~~~~~~~~--------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~e 281 (595)
T PRK01433 224 GDNMLGGNDIDVVITQYLCNKFDL--------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQT 281 (595)
T ss_pred CCcccChHHHHHHHHHHHHHhcCC--------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHH
Confidence 999999999999999999988743 12222 23459999999998875211 278999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
||++|+++++++..+|+++|++++ ..+|+.|+||||+||+|+||+.|.++||.++..++|||+|||+|||++|+++++
T Consensus 282 fe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 282 LEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998 578999999999999999999999999988888999999999999999999987
Q ss_pred CcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhhh
Q psy7891 422 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQI 498 (929)
Q Consensus 422 ~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~ 498 (929)
.+ +++.+.|++||+|||++. ++ .+.+||++|+++|++++..|++..+ .+.|.||+| +..... ++
T Consensus 360 ~~--~~~~l~Dv~p~slgi~~~-----~g---~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qG-e~~~~~--~n 426 (595)
T PRK01433 360 PH--TNSLLIDVVPLSLGMELY-----GG---IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQG-EREMAA--DC 426 (595)
T ss_pred Cc--cceEEEEecccceEEEec-----CC---EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEec-cccccC--CC
Confidence 53 578999999999999987 22 2779999999999999999987644 389999999 876443 44
Q ss_pred ccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCC
Q psy7891 499 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 578 (929)
Q Consensus 499 ~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 578 (929)
. .|+.|.|.|+++++++. .+|+|+|++|.||+|+|++.+. .|.
T Consensus 427 ~-----~lg~~~l~~i~~~~~g~-------~~i~vtf~id~~Gil~V~a~~~---------~t~---------------- 469 (595)
T PRK01433 427 R-----SLARFELKGLPPMKAGS-------IRAEVTFAIDADGILSVSAYEK---------ISN---------------- 469 (595)
T ss_pred c-----EEEEEEEcCCCCCCCCC-------ccEEEEEEECCCCcEEEEEEEc---------CCC----------------
Confidence 3 46667889999876554 6899999999999999998741 110
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHH
Q psy7891 579 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 658 (929)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~ 658 (929)
+... +.+. ....|+++++++
T Consensus 470 ----------------------------------------------------~~~~----~~i~----~~~~ls~~ei~~ 489 (595)
T PRK01433 470 ----------------------------------------------------TSHA----IEVK----PNHGIDKTEIDI 489 (595)
T ss_pred ----------------------------------------------------cEEE----EEec----CCCCCCHHHHHH
Confidence 0000 1111 123499999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy7891 659 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 738 (929)
Q Consensus 659 ~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl 738 (929)
+++.+.++...|..++++.+++|.+|+++|.++..++ ++...+++++|+.+...+++.++||..+ +...+.+++
T Consensus 490 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~ 563 (595)
T PRK01433 490 MLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA--ELTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSI 563 (595)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999994 3666789999999999999999999732 566788888
Q ss_pred HHHHhchhh
Q psy7891 739 NEINSLVVP 747 (929)
Q Consensus 739 ~eL~~~~~p 747 (929)
++|+....+
T Consensus 564 ~~~~~~~~~ 572 (595)
T PRK01433 564 KEFKSKIKK 572 (595)
T ss_pred HHHHHHHHH
Confidence 888877777
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-81 Score=731.84 Aligned_cols=571 Identities=30% Similarity=0.415 Sum_probs=507.0
Q ss_pred CCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-ceeecHHHHHhhhhCCCChHhhhHHhcCCCCCC
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 102 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d 102 (929)
.+.+||||||||||+||++++|..+.++.|..|.|.+||+|+|... ++++|..|+.++..+|.++++.+||++|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 3568999999999999999988456799999999999999999755 69999999999999999999999999998611
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHH
Q psy7891 103 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 182 (929)
Q Consensus 103 ~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~ 182 (929)
.....+.+++ +.|+|+++++++|.++++.++.+++..+.++|||||+||++.||+++++
T Consensus 83 --------------------~~~~~~~~~~-~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~ 141 (579)
T COG0443 83 --------------------GLKISVEVDG-KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKD 141 (579)
T ss_pred --------------------CCcceeeeCC-eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHH
Confidence 0113344444 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 183 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 183 Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
|+++|||++++|++||+|||++|++.... +.+|||||+||||||+||+++. .| .++|++++|
T Consensus 142 A~~iaGl~vlrlinEPtAAAlayg~~~~~------~~~vlV~DlGGGTfDvSll~~~------~g------~~ev~at~g 203 (579)
T COG0443 142 AARIAGLNVLRLINEPTAAALAYGLDKGK------EKTVLVYDLGGGTFDVSLLEIG------DG------VFEVLATGG 203 (579)
T ss_pred HHHHcCCCeEEEecchHHHHHHhHhccCC------CcEEEEEEcCCCCEEEEEEEEc------CC------EEEEeecCC
Confidence 99999999999999999999999998762 7999999999999999999986 24 899999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 342 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ef 342 (929)
|.+|||++||.+|.+|+..+|.. +.+.|+..+++++.||+.+||++|+.||+..++.+.++.+..+.++...|||++|
T Consensus 204 d~~LGGddfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~ 281 (579)
T COG0443 204 DNHLGGDDFDNALIDYLVMEFKG--KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKF 281 (579)
T ss_pred CcccCchhHHHHHHHHHHHHhhc--cCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHH
Confidence 99999999999999999999998 4457999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
|.++.+++.++..++.++|.++++...+|+.|+|+||++|||.|++.|+++||+.+.+++||||+||.|||++|+.+++.
T Consensus 282 E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~ 361 (579)
T COG0443 282 EELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGE 361 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhc
Q psy7891 423 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIA 499 (929)
Q Consensus 423 f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~ 499 (929)
.. ++.+.|++|+++|+++.+ + .+..++++++.+|.++...|.+..+. +.+.+++| ++.... ++
T Consensus 362 ~~--d~ll~Dv~plslgie~~~-----~---~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qg-e~~~~~--~~- 427 (579)
T COG0443 362 VP--DVLLLDVIPLSLGIETLG-----G---VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQG-EREMAA--DN- 427 (579)
T ss_pred cc--CceEEeeeeeccccccCc-----c---hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEec-chhhcc--cC-
Confidence 55 889999999999998872 2 26789999999999999999877443 78999999 776443 33
Q ss_pred cccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCC
Q psy7891 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTD 579 (929)
Q Consensus 500 ~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 579 (929)
..++.|.+.|+++++++. +.|.|+|.+|.||++.|++.+. .+.
T Consensus 428 ----~~lg~f~l~~i~~~~~g~-------~~i~v~f~iD~~gi~~v~a~~~---------~~~----------------- 470 (579)
T COG0443 428 ----KSLGRFELDGIPPAPRGV-------PQIEVTFDIDANGILNVTAKDL---------GTG----------------- 470 (579)
T ss_pred ----ceeEEEECCCCCCCCCCC-------CceEEEeccCCCcceEeeeecc---------cCC-----------------
Confidence 345667899999998877 5799999999999999998531 100
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHH
Q psy7891 580 ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKS 659 (929)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~ 659 (929)
|... +. .. ....|+.++++.+
T Consensus 471 ---------------------------------------------------k~~~----i~---i~-~~~~ls~~~i~~~ 491 (579)
T COG0443 471 ---------------------------------------------------KEQS----IT---IK-ASSGLSDEEIERM 491 (579)
T ss_pred ---------------------------------------------------ceEE----EE---Ee-cCCCCCHHHHHHH
Confidence 0000 11 11 2233999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy7891 660 LSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLN 739 (929)
Q Consensus 660 ~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~ 739 (929)
.+....+...|+..++..+.+|.+++++|.++..|.+ .. .+++++++.+...+.++++||+. + .+++..+.+
T Consensus 492 ~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~ 563 (579)
T COG0443 492 VEDAEANAALDKKFRELVEARNEAESLIYSLEKALKE--IV-KVSEEEKEKIEEAITDLEEALEG--E---KEEIKAKIE 563 (579)
T ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--hc-cCCHHHHHHHHHHHHHHHHHHhc--c---HHHHHHHHH
Confidence 9999999999999999999999999999999999963 22 89999999999999999999996 2 889999999
Q ss_pred HHHhchhhHHHHHHh
Q psy7891 740 EINSLVVPIWERHRE 754 (929)
Q Consensus 740 eL~~~~~pi~~R~~e 754 (929)
+|+....++..++++
T Consensus 564 ~l~~~~~~~~~~~~~ 578 (579)
T COG0443 564 ELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998887653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=5.2e-54 Score=490.94 Aligned_cols=346 Identities=19% Similarity=0.204 Sum_probs=290.5
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe---------------------------------------
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--------------------------------------- 67 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~--------------------------------------- 67 (929)
++|||||||||+||++.+| .++++.+..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 6899999999999999988 678999999999999999993
Q ss_pred --cCceeecHHHHHhhhhCCCCh--HhhhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHH
Q psy7891 68 --KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143 (929)
Q Consensus 68 --~~~~~~G~~A~~~~~~~p~~t--~~~~K~llG~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a 143 (929)
++..++|..|......+|.++ +..+|++||...-. . +..+.++++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~--------------------~---------~~~~~~e~l~a 131 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK--------------------P---------QQVALFEDLVC 131 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC--------------------c---------cceeCHHHHHH
Confidence 456789999999999999998 77999999975210 0 02234899999
Q ss_pred HHHHHHHHHHHhhcccccceEEEEecCCCC-----HHHHHH---HHHHHHHcCCcEEEEechhHHHHHHhcccccccCCC
Q psy7891 144 MLLHKAREYASVSAGQVINEAVIIVPGYFN-----QIERQS---MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE 215 (929)
Q Consensus 144 ~~L~~lk~~a~~~~~~~v~~~VItVPa~f~-----~~qR~a---l~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~ 215 (929)
++|++|++.++.++|.++.++|||||++|+ +.||++ |++||++|||++++|++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 788876 7999999999999999999999999986432
Q ss_pred CCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHH-HHHHHHhhhh--cccCCC
Q psy7891 216 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR-DFLGKKFNEM--KKTTKD 292 (929)
Q Consensus 216 ~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~-~~l~~~f~~~--~~~~~d 292 (929)
. +.++|||||||||+|+||+++.... .+ ......+|++++| ..+||++||.+|+ +++...|... ++.+.+
T Consensus 207 ~-~~~vlV~D~GGGT~D~Svv~~~~~~---~~--~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~ 279 (450)
T PRK11678 207 E-EKRVLVVDIGGGTTDCSMLLMGPSW---RG--RADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIA 279 (450)
T ss_pred C-CCeEEEEEeCCCeEEEEEEEecCcc---cc--cCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCc
Confidence 2 7899999999999999999985110 00 1123578999998 5899999999998 6888888531 111110
Q ss_pred c-----------------------------------cCCHHHH------------HHHHHHHHHhhhhccCCCceeEEEe
Q psy7891 293 V-----------------------------------FENPRAV------------AKLFKEAGRLKNVLSANNEHFAQIE 325 (929)
Q Consensus 293 ~-----------------------------------~~~~~~~------------~kL~~~aek~K~~LS~~~~~~v~ie 325 (929)
+ ..+|+.+ .+|+.+||++|+.||.+.++.+.++
T Consensus 280 ~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~ 359 (450)
T PRK11678 280 LPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLD 359 (450)
T ss_pred CcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEec
Confidence 0 0134333 3788999999999999999999888
Q ss_pred ecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCch
Q psy7891 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTD 405 (929)
Q Consensus 326 ~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~d 405 (929)
.+. .++...|||++|+++|+++++++..+|+++|+++++. ++.|+||||+||+|.|++.|.+.||.......++.
T Consensus 360 ~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~ 434 (450)
T PRK11678 360 FIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDF 434 (450)
T ss_pred ccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCc
Confidence 664 4578999999999999999999999999999999975 47899999999999999999999996556678999
Q ss_pred HHHHhhHHHHHHhh
Q psy7891 406 EAAALGAVYKAADL 419 (929)
Q Consensus 406 eaVA~GAa~~aa~~ 419 (929)
++||.|+|++|..+
T Consensus 435 ~sVa~Gla~~a~~~ 448 (450)
T PRK11678 435 GSVTAGLARWAQVV 448 (450)
T ss_pred chHHHHHHHHHHhh
Confidence 99999999999754
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.9e-37 Score=346.84 Aligned_cols=307 Identities=19% Similarity=0.260 Sum_probs=238.2
Q ss_pred EEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC--c-eeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~--~-~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
+||||||+|++|+....| .++. .||+|+|... . ..+|.+|..+..+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~-------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA-------------- 61 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE--------------
Confidence 899999999999886433 2332 5999999843 2 47999998876665544321
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
...+.++ .+...+++..+|+++.+.+..........+|||||++|++.||+++.+|+
T Consensus 62 ----------------------~~pi~~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 ----------------------IRPLRDG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ----------------------EccCCCC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0111111 33444566777888775553322223347999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
+.||++++.+++||+|||++|+.... . +..++|||+||||||+++++.. + + ...++.
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-----~-~~~~lVvDiGggttdvsvv~~g-------~-------~---~~~~~~ 175 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-----Q-PSGNMVVDIGGGTTDIAVLSLG-------G-------I---VTSSSI 175 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-----C-CCeEEEEEeCCCeEEEEEEEeC-------C-------E---EEeCCc
Confidence 99999999999999999999997532 2 6779999999999999999853 2 1 124567
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC----ceeEEEe--ecccCcceEEEEe
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLVT 338 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~v~ie--~l~~~~d~~~~it 338 (929)
.+||.+||..|++++..+|.. .+. ...||++|+.++... ...+.+. .+..+.++.+.|+
T Consensus 176 ~lGG~did~~i~~~l~~~~~~------~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~ 240 (336)
T PRK13928 176 KVAGDKFDEAIIRYIRKKYKL------LIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVT 240 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhch------hcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEEC
Confidence 999999999999999987743 111 256999999886431 1233332 2345667789999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcC--CCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 339 RAEFEALNEDLFDRVGYPVEQALKSSA--VPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 339 R~efe~l~~~l~~~i~~~i~~~L~~a~--~~~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
|++|++++.++++++..+|.++|+.++ +..+.++ .|+|+||+|++|.|++.|++.|+.++....||++|||+|||++
T Consensus 241 ~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~ 320 (336)
T PRK13928 241 SEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKM 320 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 999999999999999999999999986 4456777 7999999999999999999999988888889999999999999
Q ss_pred HHhh
Q psy7891 416 AADL 419 (929)
Q Consensus 416 aa~~ 419 (929)
+..+
T Consensus 321 ~~~~ 324 (336)
T PRK13928 321 LENI 324 (336)
T ss_pred Hhch
Confidence 8764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.1e-36 Score=339.74 Aligned_cols=306 Identities=21% Similarity=0.294 Sum_probs=243.5
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-c--eeecHHHHHhhhhCCCChHhhhHHhcCCCCCC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 102 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d 102 (929)
-.+||||||+|++| +.+|.+ ++.| .||+|+|+.. . .++|.+|..+..+.|.++... +
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~--~~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~-------- 64 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKG--IILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R-------- 64 (335)
T ss_pred CeEEEEcccccEEE--EECCCc--EEec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e--------
Confidence 36899999999974 556645 3555 3999999743 2 589999999888888765431 1
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccc--eEEEEecCCCCHHHHHHH
Q psy7891 103 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVIN--EAVIIVPGYFNQIERQSM 180 (929)
Q Consensus 103 ~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~--~~VItVPa~f~~~qR~al 180 (929)
| +..+ .+.--++++++|++++..++..++..+. .+|||||++|++.||+++
T Consensus 65 ----------p----------------i~~G-~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 65 ----------P----------------MKDG-VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ----------c----------------CCCC-ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 1 1111 1222378899999999998877776554 799999999999999999
Q ss_pred HHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEE
Q psy7891 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260 (929)
Q Consensus 181 ~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~ 260 (929)
.+|++.||++++.|++||+|||++|+.... . +..++|||+||||||++++.+. | + + .
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----~-~~~~lvvDiG~gtt~v~vi~~~-------~-------~--~-~ 174 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVD-----E-PVANVVVDIGGGTTEVAIISFG-------G-------V--V-S 174 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcC-----C-CceEEEEEeCCCeEEEEEEEeC-------C-------E--E-E
Confidence 999999999999999999999999986532 2 6789999999999999999864 3 1 1 2
Q ss_pred ecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC----ceeEEEe--ecccCcceE
Q psy7891 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFK 334 (929)
Q Consensus 261 ~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~v~ie--~l~~~~d~~ 334 (929)
.++..+||++||..|+++|.+.|.. .+. ...||++|+.|+... ...+.+. ++..+....
T Consensus 175 ~~~~~~GG~~id~~l~~~l~~~~~~------~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~ 239 (335)
T PRK13929 175 CHSIRIGGDQLDEDIVSFVRKKYNL------LIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKT 239 (335)
T ss_pred ecCcCCHHHHHHHHHHHHHHHHhCc------CcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeE
Confidence 3456899999999999999876533 111 257999999998632 2223332 233455678
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhh
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALG 411 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~G 411 (929)
+.|+|++|+++|.+++.++...|.++|+.++.. .+.++ .|+|+||+|++|.++++|++.|+.++....||+++|++|
T Consensus 240 i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~G 319 (335)
T PRK13929 240 ITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIG 319 (335)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHH
Confidence 999999999999999999999999999998643 36677 699999999999999999999998888889999999999
Q ss_pred HHHHH
Q psy7891 412 AVYKA 416 (929)
Q Consensus 412 Aa~~a 416 (929)
|+..-
T Consensus 320 a~~~~ 324 (335)
T PRK13929 320 TGRSL 324 (335)
T ss_pred HHHHH
Confidence 98764
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.7e-34 Score=320.72 Aligned_cols=306 Identities=18% Similarity=0.274 Sum_probs=228.5
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-c--eeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
.+||||||++++++.. |.+. ++ .+||+|+|... + .++|.+|..+..+.|.++..
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~------------- 63 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA------------- 63 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE-------------
Confidence 5899999999998543 4333 32 27999999643 2 48999999877665544321
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
.+.+..+..... +.+..+|+++......... .-..+|||||++|++.||+++.+|
T Consensus 64 -----------------------~~pi~~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 64 -----------------------IRPMKDGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred -----------------------EecCCCCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 111111211222 2334445554443322221 123899999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
++.||++++.+++||+|||++|+.... . +..++|||+||||||++++++. | + ...++
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~-----~-~~~~lvvDiGggttdvs~v~~~-------~-------~---~~~~~ 175 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT-----E-PTGSMVVDIGGGTTEVAVISLG-------G-------I---VYSKS 175 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc-----C-CCeEEEEEeCCCeEEEEEEecC-------C-------e---EeeCC
Confidence 999999999999999999999987542 2 5678999999999999999864 3 1 12345
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc----eeEEE--eecccCcceEEEE
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQI--EGLIDEIDFKLLV 337 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~----~~v~i--e~l~~~~d~~~~i 337 (929)
..+||++||..|++++.++|.. .+. ...||++|+.++.... ..+.+ +.+..+.++.+.|
T Consensus 176 ~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (334)
T PRK13927 176 VRVGGDKFDEAIINYVRRNYNL------LIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITI 240 (334)
T ss_pred cCChHHHHHHHHHHHHHHHhCc------CcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEE
Confidence 6799999999999999876643 111 2468999998875432 22333 2344566678999
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
+|++|++++.+.+.++..+|.++|+.++.. .+.++ .|+|+||+|++|.|+++|++.|+.++....||+++||+||++
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 999999999999999999999999988643 23344 599999999999999999999998888889999999999999
Q ss_pred HHHh
Q psy7891 415 KAAD 418 (929)
Q Consensus 415 ~aa~ 418 (929)
++..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 9865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=7.7e-34 Score=317.58 Aligned_cols=306 Identities=19% Similarity=0.285 Sum_probs=226.2
Q ss_pred EEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-----c--eeecHHHHHhhhhCCCChHhhhHHhcCCCC
Q psy7891 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 100 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-----~--~~~G~~A~~~~~~~p~~t~~~~K~llG~~~ 100 (929)
+||||||+||++++...| + ++ ..||+|+|.++ . .++|.+|..+..+.|.+.- ++
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AI------- 65 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EE-------
Confidence 899999999998885433 2 32 37999999633 3 6799999887655554431 11
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHH
Q psy7891 101 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 180 (929)
Q Consensus 101 ~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al 180 (929)
..+.++..... +.+..+++|+........+..-..+|||||++|+..||+++
T Consensus 66 ---------------------------~pi~~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 66 ---------------------------RPMKDGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ---------------------------ecCCCCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 11112222222 33344455554433222221223899999999999999999
Q ss_pred HHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEE
Q psy7891 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260 (929)
Q Consensus 181 ~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~ 260 (929)
.+|++.||++++.+++||+|||++|+.... . +..++|||+||||||++++++. | + ..
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-----~-~~~~lVvDiG~gttdvs~v~~~-------~-------~---~~ 174 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-----E-PTGSMVVDIGGGTTEVAVISLG-------G-------I---VV 174 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-----C-CceEEEEEcCCCeEEEEEEEeC-------C-------E---Ee
Confidence 999999999999999999999999986432 2 6789999999999999999864 3 1 12
Q ss_pred ecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc-----eeEEEee--cccCcce
Q psy7891 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE-----HFAQIEG--LIDEIDF 333 (929)
Q Consensus 261 ~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~-----~~v~ie~--l~~~~d~ 333 (929)
.++..+||++||+.|++++.++|.. ... +..||++|+.|+.... ..+.+.. ...+...
T Consensus 175 ~~~~~lGG~did~~l~~~l~~~~~~------~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (333)
T TIGR00904 175 SRSIRVGGDEFDEAIINYIRRTYNL------LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPR 239 (333)
T ss_pred cCCccchHHHHHHHHHHHHHHHhcc------cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCe
Confidence 3456899999999999999876632 111 3579999999875322 1222211 1223345
Q ss_pred EEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC-CCc-c-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHh
Q psy7891 334 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPM-DVI-S-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAAL 410 (929)
Q Consensus 334 ~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~I-~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~ 410 (929)
...|+|++|.+++.+.+.++...|.++|+.++... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.
T Consensus 240 ~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~ 319 (333)
T TIGR00904 240 TIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAK 319 (333)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHH
Confidence 67899999999999999999999999999886432 244 3 69999999999999999999999888889999999999
Q ss_pred hHHHHHHh
Q psy7891 411 GAVYKAAD 418 (929)
Q Consensus 411 GAa~~aa~ 418 (929)
||++++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99998754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=9.2e-33 Score=309.79 Aligned_cols=308 Identities=19% Similarity=0.267 Sum_probs=232.3
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec---CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~---~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
-+||||||+++++++... ++ ++ .+||+|+|.. ...++|.+|.....+.|.+.-
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~-------------- 65 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE-------------- 65 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--------------
Confidence 399999999999988633 32 22 2599999964 236899999876654443321
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
+...+..+.... -+.+..+|+++.+.+..........+|||+|++|+..+|+++.+|
T Consensus 66 ----------------------~~~pi~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 66 ----------------------AIRPLKDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ----------------------EeecCCCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 011111121122 245677777777655443344467899999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
++.+|++++.+++||+|||++|+..... +..++|||+||||||++++... + + + ..+.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~------~~~~lVvDiG~gttdvs~v~~g-------~-------~--~-~~~~ 179 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE------PVGNMVVDIGGGTTEVAVISLG-------G-------I--V-YSES 179 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC------CCceEEEEeCCCeEEEEEEEeC-------C-------E--E-eecC
Confidence 9999999999999999999999865322 4568999999999999999743 1 1 1 2456
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc----eeEEEe--ecccCcceEEEE
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQIE--GLIDEIDFKLLV 337 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~----~~v~ie--~l~~~~d~~~~i 337 (929)
..+||.+||+.|++++.+++.- ++. ...||++|+.|+.... ..+.+. .+..+.+..+.|
T Consensus 180 ~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 244 (335)
T PRK13930 180 IRVAGDEMDEAIVQYVRRKYNL------LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEI 244 (335)
T ss_pred cCchhHHHHHHHHHHHHHHhCC------CCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEE
Confidence 7899999999999999887532 111 2478999999976432 123332 223445568899
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCC--CCCccE-EEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~~-ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
+|++|++++.+.+.++.+.|.++|+.+... .+.++. |+|+||+|++|.++++|.+.|+.++....+|+++||+||++
T Consensus 245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~ 324 (335)
T PRK13930 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK 324 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 999999999999999999999999987532 234454 99999999999999999999998888888999999999999
Q ss_pred HHHhh
Q psy7891 415 KAADL 419 (929)
Q Consensus 415 ~aa~~ 419 (929)
.+...
T Consensus 325 ~~~~~ 329 (335)
T PRK13930 325 ALENL 329 (335)
T ss_pred HHhCh
Confidence 98653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.96 E-value=8.4e-29 Score=269.74 Aligned_cols=303 Identities=22% Similarity=0.328 Sum_probs=217.4
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC---ceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~---~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
-+||||||+|+.|+.-..| ++.++ ||+|+|+.. -..+|.+|..+..+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 5899999999987543333 45544 999999753 3568999987655544322
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
.+...+.++ .+.--++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 58 ---------------------~~~~Pl~~G-vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 58 ---------------------EVVRPLKDG-VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp ---------------------EEE-SEETT-EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred ---------------------EEEccccCC-cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 122223333 2333456777888887777553223445799999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
+..||..-+.||.||.|||+..++.-.. +...||+|+||||||++++... | ++... .
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~------~~g~miVDIG~GtTdiavislg-------g---------iv~s~-s 172 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE------PRGSMIVDIGGGTTDIAVISLG-------G---------IVASR-S 172 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS------SS-EEEEEE-SS-EEEEEEETT-------E---------EEEEE-E
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC------CCceEEEEECCCeEEEEEEECC-------C---------EEEEE-E
Confidence 9999999999999999999999876432 7889999999999999999742 2 22222 2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC----ceeEEEe--ecccCcceEEEE
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLV 337 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~v~ie--~l~~~~d~~~~i 337 (929)
..+||++||+.|.+|+.++|.- .+. .+.||++|+.++.-. +..+.|. ++..+....+.|
T Consensus 173 i~~gG~~~DeaI~~~ir~~y~l------~Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i 237 (326)
T PF06723_consen 173 IRIGGDDIDEAIIRYIREKYNL------LIG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEI 237 (326)
T ss_dssp ES-SHHHHHHHHHHHHHHHHSE------E-----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEE
T ss_pred EEecCcchhHHHHHHHHHhhCc------ccC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEE
Confidence 4799999999999999998853 111 246899999887542 2234443 456788889999
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCC---Cc--cEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMD---VI--SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~---~I--~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GA 412 (929)
+-+++.+.|.+.+.+|...|+++|+.. +++ || +.|+|+||+++++.+.+.|++.+|.++...-||..|||+||
T Consensus 238 ~~~ev~~ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~ 315 (326)
T PF06723_consen 238 TSSEVREAIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGA 315 (326)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHH
Confidence 999999999999999999999999965 322 32 46999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy7891 413 VYKA 416 (929)
Q Consensus 413 a~~a 416 (929)
....
T Consensus 316 ~~~l 319 (326)
T PF06723_consen 316 GKLL 319 (326)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=2.7e-28 Score=258.14 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=173.7
Q ss_pred eeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCC
Q psy7891 135 LYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN 214 (929)
Q Consensus 135 ~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~ 214 (929)
.+.-.+.++++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34445788999999999999999989999999999999999999999999999999999999999999998632
Q ss_pred CCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCcc
Q psy7891 215 ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF 294 (929)
Q Consensus 215 ~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~ 294 (929)
..+|+|+||||||+++++- | . ++. ..+..+||++||+.|++.+. .+
T Consensus 109 -----~~~vvDiGggtt~i~i~~~--------G------~--i~~-~~~~~~GG~~it~~Ia~~~~----------i~-- 154 (239)
T TIGR02529 109 -----NGAVVDVGGGTTGISILKK--------G------K--VIY-SADEPTGGTHMSLVLAGAYG----------IS-- 154 (239)
T ss_pred -----CcEEEEeCCCcEEEEEEEC--------C------e--EEE-EEeeecchHHHHHHHHHHhC----------CC--
Confidence 2599999999999999762 3 2 222 33567999999998876542 11
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEE
Q psy7891 295 ENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQV 374 (929)
Q Consensus 295 ~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~V 374 (929)
+.+||++|+.++. ++++.++|.++++++...|+++|++. .++.|
T Consensus 155 ---------~~~AE~~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v 198 (239)
T TIGR02529 155 ---------FEEAEEYKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDL 198 (239)
T ss_pred ---------HHHHHHHHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEE
Confidence 2579999986541 45677899999999999999999865 45689
Q ss_pred EEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 375 ILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 375 iLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
+|+||++++|.+++.|++.||.++..+.||++++|.|||+
T Consensus 199 ~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 199 YLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred EEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999998888899999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=4.5e-26 Score=237.72 Aligned_cols=311 Identities=21% Similarity=0.302 Sum_probs=241.2
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec--C---ceeecHHHHHhhhhCCCChHhhhHHhcCCC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 99 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~--~---~~~~G~~A~~~~~~~p~~t~~~~K~llG~~ 99 (929)
+..+||||||.|+.|..-..| |++|+ ||+|++.. + -..+|.+|+.+..+.|.|.
T Consensus 6 s~diGIDLGTanTlV~~k~kg----IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni----------- 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG----IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI----------- 64 (342)
T ss_pred cccceeeecccceEEEEcCce----EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc-----------
Confidence 458999999999998776444 77776 99999965 2 2468999876654444332
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcc-cccceEEEEecCCCCHHHHH
Q psy7891 100 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG-QVINEAVIIVPGYFNQIERQ 178 (929)
Q Consensus 100 ~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~-~~v~~~VItVPa~f~~~qR~ 178 (929)
.......++ .+---+++..+|+|+.+....... .....++|.||..-++.+|+
T Consensus 65 -------------------------~aiRPmkdG-VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 65 -------------------------VAIRPMKDG-VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred -------------------------eEEeecCCc-EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 122233343 344456677788888777754333 34457999999999999999
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~ 258 (929)
|+++|++.||..-+.++.||.|||+..++.-.. +..-+|||+||||||++++.+. | +.
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~e------p~G~mvvDIGgGTTevaVISlg-------g---------iv 176 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIME------PTGSMVVDIGGGTTEVAVISLG-------G---------IV 176 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCcccC------CCCCEEEEeCCCceeEEEEEec-------C---------EE
Confidence 999999999999999999999999988875432 5677999999999999999975 5 22
Q ss_pred EEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC--------CCceeEEEeecccC
Q psy7891 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA--------NNEHFAQIEGLIDE 330 (929)
Q Consensus 259 ~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~--------~~~~~v~ie~l~~~ 330 (929)
++....+||+.||..|.+|+.++|+- .-..+ .||++|+..-. ..+..+.-.++..+
T Consensus 177 -~~~Sirv~GD~~De~Ii~yvr~~~nl--------~IGe~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~G 240 (342)
T COG1077 177 -SSSSVRVGGDKMDEAIIVYVRKKYNL--------LIGER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTG 240 (342)
T ss_pred -EEeeEEEecchhhHHHHHHHHHHhCe--------eecHH-------HHHHHHHHhcccccccCCccceeeEEeeecccC
Confidence 22335799999999999999998854 12222 36777765432 12234455567778
Q ss_pred cceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHc--CCCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHH
Q psy7891 331 IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEA 407 (929)
Q Consensus 331 ~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~I~~-ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~dea 407 (929)
..-.++++-++..+.+++.+++|.+.++..|+.. .+..+-++. ++|+||++.+..+.+.|.+..+..+...-+|-.|
T Consensus 241 lPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~ 320 (342)
T COG1077 241 LPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTC 320 (342)
T ss_pred CCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHH
Confidence 8889999999999999999999999999999986 344455666 9999999999999999999999888889999999
Q ss_pred HHhhHHHHHHhhc
Q psy7891 408 AALGAVYKAADLS 420 (929)
Q Consensus 408 VA~GAa~~aa~~s 420 (929)
||+|+.+....+.
T Consensus 321 Va~G~G~~le~~~ 333 (342)
T COG1077 321 VAKGTGKALEALD 333 (342)
T ss_pred HHhccchhhhhhH
Confidence 9999988877654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.94 E-value=2.8e-25 Score=239.35 Aligned_cols=202 Identities=21% Similarity=0.286 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 139 eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
.+.....|+++++.++.++|..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|.+. .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5567778999999999998988999999999999999999999999999999999999999999887531 1
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~ 298 (929)
.+++|||||||+++++. .| .+ .. ..+..+||++||+.|++++.- +
T Consensus 137 --~~vvDIGggtt~i~v~~--------~g------~~--~~-~~~~~~GG~~it~~Ia~~l~i----------~------ 181 (267)
T PRK15080 137 --GAVVDIGGGTTGISILK--------DG------KV--VY-SADEPTGGTHMSLVLAGAYGI----------S------ 181 (267)
T ss_pred --cEEEEeCCCcEEEEEEE--------CC------eE--EE-EecccCchHHHHHHHHHHhCC----------C------
Confidence 58999999999999975 13 22 22 246789999999999987621 1
Q ss_pred HHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEc
Q psy7891 299 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378 (929)
Q Consensus 299 ~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvG 378 (929)
+.+||++|+.++ +++++.++++++++++.+.|++.|+.. .++.|+|+|
T Consensus 182 -----~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtG 229 (267)
T PRK15080 182 -----FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVG 229 (267)
T ss_pred -----HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEEC
Confidence 357889988753 357889999999999999999999864 678999999
Q ss_pred CCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 379 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 379 G~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
|+|++|.+++.+++.||.++....||+.++|.|||++|
T Consensus 230 G~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 230 GTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999888889999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.88 E-value=8.9e-21 Score=215.36 Aligned_cols=195 Identities=17% Similarity=0.213 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
....+.+.+|++.|||++..++.||.|+|++|..... . +..++++|+||||||++++.- |
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-----~-~~~~~vvDiG~gtt~i~i~~~--------g------ 216 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-----K-ELGVCLIDIGGGTTDIAVYTG--------G------ 216 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-----h-cCCEEEEEeCCCcEEEEEEEC--------C------
Confidence 3456788899999999999999999999998854321 2 567999999999999999862 3
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCC------CceeEEEeec
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN------NEHFAQIEGL 327 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~------~~~~v~ie~l 327 (929)
.+.. .....+||++||..|++.+. + .+.+||++|+.++.. .+..+.++.+
T Consensus 217 ~~~~---~~~i~~GG~~it~~i~~~l~------------~---------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~ 272 (371)
T TIGR01174 217 SIRY---TKVIPIGGNHITKDIAKALR------------T---------PLEEAERIKIKYGCASIPLEGPDENIEIPSV 272 (371)
T ss_pred EEEE---EeeecchHHHHHHHHHHHhC------------C---------CHHHHHHHHHHeeEecccCCCCCCEEEeccC
Confidence 2211 23357999999998876541 1 146799999998863 2345556544
Q ss_pred ccCcceEEEEeHHHHHHHHHHHHhHHHHHHH-HHHHHcCCCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCcc--CCC--
Q psy7891 328 IDEIDFKLLVTRAEFEALNEDLFDRVGYPVE-QALKSSAVPMDVISQ-VILVGAGTRVPKVQEKITKVVGVEL--SKN-- 401 (929)
Q Consensus 328 ~~~~d~~~~itR~efe~l~~~l~~~i~~~i~-~~L~~a~~~~~~I~~-ViLvGG~sriP~v~~~l~~~f~~~i--~~~-- 401 (929)
+.++...|+|++|++++.+.++++...|. +.|+.++.. ++++. |+|+||+|++|.|++.+++.|+.++ ..+
T Consensus 273 --~~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~ 349 (371)
T TIGR01174 273 --GERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQN 349 (371)
T ss_pred --CCCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCc
Confidence 34677899999999999999999999997 999998876 67777 9999999999999999999999432 211
Q ss_pred --------CCchHHHHhhHHHH
Q psy7891 402 --------LNTDEAAALGAVYK 415 (929)
Q Consensus 402 --------~n~deaVA~GAa~~ 415 (929)
-+|..++|.|.++|
T Consensus 350 ~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 350 IGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred cCCchhhcCCcHHHHHHHHHhC
Confidence 26778888888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.85 E-value=3e-19 Score=205.24 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
..++.. ..|++.|||++..++.||.|+|+++..... . +..++++||||||||++++. .|
T Consensus 166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-----~-~~gv~vvDiGggtTdisv~~--------~G------ 224 (420)
T PRK09472 166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTEDE-----R-ELGVCVVDIGGGTMDIAVYT--------GG------ 224 (420)
T ss_pred HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcChhh-----h-hcCeEEEEeCCCceEEEEEE--------CC------
Confidence 344444 579999999999999999999998854321 2 57799999999999999997 24
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC----C--CceeEEEeec
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA----N--NEHFAQIEGL 327 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~----~--~~~~v~ie~l 327 (929)
.+ .+.....+||++|+..|+..|. + -+.+||++|+.+.. . .+..+.++.+
T Consensus 225 ~l---~~~~~i~~GG~~it~dIa~~l~------------i---------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~ 280 (420)
T PRK09472 225 AL---RHTKVIPYAGNVVTSDIAYAFG------------T---------PPSDAEAIKVRHGCALGSIVGKDESVEVPSV 280 (420)
T ss_pred EE---EEEeeeechHHHHHHHHHHHhC------------c---------CHHHHHHHHHhcceeccccCCCCceeEecCC
Confidence 22 2223357999999998886552 1 13579999965432 1 2345666654
Q ss_pred ccCcceEEEEeHHHHHHHHHHHHhHHHHHHH-------HHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccC-
Q psy7891 328 IDEIDFKLLVTRAEFEALNEDLFDRVGYPVE-------QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELS- 399 (929)
Q Consensus 328 ~~~~d~~~~itR~efe~l~~~l~~~i~~~i~-------~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~- 399 (929)
.+.. ...|+|.+|.+++.+.++.+.+.|. ..|..+++....++.|+|+||++++|.|++.+++.|+.++.
T Consensus 281 ~~~~--~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri 358 (420)
T PRK09472 281 GGRP--PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRI 358 (420)
T ss_pred CCCC--CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEE
Confidence 3322 3589999999999996666665554 45567788777899999999999999999999999984322
Q ss_pred -C----------CCCchHHHHhhHHHHHHh
Q psy7891 400 -K----------NLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 400 -~----------~~n~deaVA~GAa~~aa~ 418 (929)
. .-+|..|+|.|.++|+..
T Consensus 359 ~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 359 GAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred eCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 1 247999999999999863
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.66 E-value=2.1e-14 Score=160.90 Aligned_cols=206 Identities=25% Similarity=0.304 Sum_probs=162.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeecc
Q psy7891 164 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT 243 (929)
Q Consensus 164 ~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~ 243 (929)
.++++|..+ -+.|.+|++.+||++..++-+|-|+|.+....... ...++++||||||||+++++
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk------elGv~lIDiG~GTTdIai~~------ 221 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK------ELGVALIDIGGGTTDIAIYK------ 221 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH------hcCeEEEEeCCCcEEEEEEE------
Confidence 466766554 56688888999999999999999999876544322 67899999999999999987
Q ss_pred ccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCC------
Q psy7891 244 KERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN------ 317 (929)
Q Consensus 244 ~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~------ 317 (929)
.| . +.+.+...+||++++..|+.-|.-.| ..||++|...-..
T Consensus 222 --~G------~---l~~~~~ipvgG~~vT~DIa~~l~t~~---------------------~~AE~iK~~~g~a~~~~~~ 269 (418)
T COG0849 222 --NG------A---LRYTGVIPVGGDHVTKDIAKGLKTPF---------------------EEAERIKIKYGSALISLAD 269 (418)
T ss_pred --CC------E---EEEEeeEeeCccHHHHHHHHHhCCCH---------------------HHHHHHHHHcCccccCcCC
Confidence 24 2 22333467999999999998774333 3588888775332
Q ss_pred CceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC-
Q psy7891 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV- 396 (929)
Q Consensus 318 ~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~- 396 (929)
.+..+.++...++. ...++|.++.++++.-+..+..+++..|+++++...-...|+|+||++.+|.+.+..++.|+.
T Consensus 270 ~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~ 347 (418)
T COG0849 270 DEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRP 347 (418)
T ss_pred CcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCc
Confidence 23456666654443 788999999999999999999999999999999877778999999999999999999999984
Q ss_pred -ccCCC----------CCchHHHHhhHHHHHHhh
Q psy7891 397 -ELSKN----------LNTDEAAALGAVYKAADL 419 (929)
Q Consensus 397 -~i~~~----------~n~deaVA~GAa~~aa~~ 419 (929)
++..+ .+|..+.|.|..++++..
T Consensus 348 vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 348 VRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred eEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 22222 357889999999988754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.62 E-value=2.3e-14 Score=163.17 Aligned_cols=301 Identities=16% Similarity=0.108 Sum_probs=188.8
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe----------cCceeecHHHHHhhhhCCCChHhhhHHhc
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH----------KGERTFGEDAQIIGTRFPSNSYGYFLDLL 96 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~----------~~~~~~G~~A~~~~~~~p~~t~~~~K~ll 96 (929)
.|.||+||.++++++..++.|.-+ +||+|+.. ....++|.+|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~---------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV---------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE---------eeccceeecCcccccccCCCceEEchhhhhCCCC-------------
Confidence 378999999999999876645433 46666553 2356777776542210
Q ss_pred CCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHH
Q psy7891 97 GKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 176 (929)
Q Consensus 97 G~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~q 176 (929)
.+.-++|+ .++. +.--+.+..+++++....-.. ...-..++|++|..++..+
T Consensus 59 ----------~~~~~~P~----------------~~G~-i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~ 110 (371)
T cd00012 59 ----------GLELIYPI----------------EHGI-VVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSN 110 (371)
T ss_pred ----------ceEEcccc----------------cCCE-EeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHH
Confidence 00011121 1221 222344556666665432111 1124579999999999888
Q ss_pred HHHHHHH-HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcE
Q psy7891 177 RQSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV 255 (929)
Q Consensus 177 R~al~~A-a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~ 255 (929)
|+.+.+. .+..|+..+.+++++.+|+++++. .+.+|+|+|+++|+++.+. .| .
T Consensus 111 r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~i~pv~--------~G-------~ 164 (371)
T cd00012 111 REKTTEIMFETFNVPALYVAIQAVLSLYASGR-----------TTGLVVDSGDGVTHVVPVY--------DG-------Y 164 (371)
T ss_pred HHHHHHHhhccCCCCEEEEechHHHHHHhcCC-----------CeEEEEECCCCeeEEEEEE--------CC-------E
Confidence 8888775 577899999999999999988862 5789999999999998876 24 2
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc--------------ee
Q psy7891 256 SVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE--------------HF 321 (929)
Q Consensus 256 ~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~--------------~~ 321 (929)
-+........+||.++|..|.++|..+... .+.. .-...++.+|+.+..-.. ..
T Consensus 165 ~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~ 232 (371)
T cd00012 165 VLPHAIKRLDLAGRDLTRYLKELLRERGYE-----LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLL 232 (371)
T ss_pred EchhhheeccccHHHHHHHHHHHHHhcCCC-----ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCcc
Confidence 222222345799999999999998654321 0111 112235555554322100 00
Q ss_pred EEEeecccCcceEEEEeHHHHHHHHHHHHh---------HHHHHHHHHHHHcCC--CCCCccEEEEEcCCcCCHHHHHHH
Q psy7891 322 AQIEGLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPVEQALKSSAV--PMDVISQVILVGAGTRVPKVQEKI 390 (929)
Q Consensus 322 v~ie~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i~~~L~~a~~--~~~~I~~ViLvGG~sriP~v~~~l 390 (929)
.....+-++ ..+.++.+.| .+++-+|+ .+.+.|.++|..+.. ...-++.|+|+||+|++|.+.++|
T Consensus 233 ~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl 309 (371)
T cd00012 233 EKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERL 309 (371)
T ss_pred ceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHH
Confidence 001111122 3455665544 33444444 678888888887643 223467899999999999999999
Q ss_pred HHHhCC----------ccCCCCCchHHHHhhHHHHHHh
Q psy7891 391 TKVVGV----------ELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 391 ~~~f~~----------~i~~~~n~deaVA~GAa~~aa~ 418 (929)
.+.++. .+....++..++-+||+++|..
T Consensus 310 ~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 310 QKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 988872 1234567888999999998864
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.54 E-value=1.6e-13 Score=156.55 Aligned_cols=298 Identities=16% Similarity=0.187 Sum_probs=180.2
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC---------ceeecHHHHHhhhhCCCChHhhhHHhc
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---------ERTFGEDAQIIGTRFPSNSYGYFLDLL 96 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~---------~~~~G~~A~~~~~~~p~~t~~~~K~ll 96 (929)
.+|+||+||.++++++.....|.- .+||+|+.... ..++|.+|....
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~---------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~--------------- 57 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV---------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR--------------- 57 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE---------EccceeeEecccccccCCCcceEecchhhhcC---------------
Confidence 368999999999999886654432 35888877422 235666653211
Q ss_pred CCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhccc--ccceEEEEecCCCCH
Q psy7891 97 GKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQ 174 (929)
Q Consensus 97 G~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~--~v~~~VItVPa~f~~ 174 (929)
+. ..-++|+ .++ .+.--+.+..+++++... .++. .-..++|++|...+.
T Consensus 58 ~~---------~~~~~P~----------------~~G-~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 58 GG---------LELKYPI----------------EHG-IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred CC---------ceecCCC----------------cCC-EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 0011122 122 223345566777777653 2222 234689999999999
Q ss_pred HHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 175 IERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 175 ~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
.+|+.+.+.+ +..|+.-+.+++++.+|+++++ ..+.+|+|+|+++|+++.|. .|
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~pv~--------~G------ 163 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG-----------RTTGLVIDSGDGVTHVVPVV--------DG------ 163 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----------CCEEEEEecCCCcceEEEEE--------CC------
Confidence 9999998887 5779999999999999998876 35789999999999999886 24
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC---------------
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN--------------- 318 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~--------------- 318 (929)
.-+........+||.++|..|.++|...-.. . +.. .-...++.+|+.+..-.
T Consensus 164 -~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~---~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~ 230 (373)
T smart00268 164 -YVLPHAIKRIDIAGRDLTDYLKELLSERGYQ---F--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSE 230 (373)
T ss_pred -EEchhhheeccCcHHHHHHHHHHHHHhcCCC---C--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhccc
Confidence 2222222335799999999999988662100 0 110 11123444444332100
Q ss_pred -ceeEEEeecccCcceEEEEeHHHHHHHHHHHH---------hHHHHHHHHHHHHcCCC--CCCccEEEEEcCCcCCHHH
Q psy7891 319 -EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLF---------DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKV 386 (929)
Q Consensus 319 -~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~---------~~i~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v 386 (929)
.....--.+-++.. +.+..+.| .+++.+| ..+.+.|.++|..+... ..-.+.|+|+||+|++|.+
T Consensus 231 ~~~~~~~~~lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl 307 (373)
T smart00268 231 SSKLEKTYELPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGF 307 (373)
T ss_pred ccccceeEECCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCH
Confidence 00000011122322 33433333 2333344 36778888888876422 1224669999999999999
Q ss_pred HHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 387 QEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 387 ~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
.++|.+.+.. .+....++..++=+||+++|.
T Consensus 308 ~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 308 GERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 9999888741 222334455666677776664
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.45 E-value=1.8e-13 Score=132.99 Aligned_cols=195 Identities=21% Similarity=0.275 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEE
Q psy7891 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 223 (929)
Q Consensus 144 ~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv 223 (929)
.+.+++++.++..+|.++++..=++|+.--+...++..+..+.||++++..++||||||.-.++. .-.|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-----------dg~V 144 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-----------DGGV 144 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC-----------CCcE
Confidence 46789999999999999999999999999888888888999999999999999999999655433 2368
Q ss_pred EEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHH
Q psy7891 224 YDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKL 303 (929)
Q Consensus 224 ~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL 303 (929)
+|+|||||-++|++ .| . |+ +.-|...||.++...|+-+. +++
T Consensus 145 VDiGGGTTGIsi~k--------kG------k--Vi-y~ADEpTGGtHmtLvlAG~y----------gi~----------- 186 (277)
T COG4820 145 VDIGGGTTGISIVK--------KG------K--VI-YSADEPTGGTHMTLVLAGNY----------GIS----------- 186 (277)
T ss_pred EEeCCCcceeEEEE--------cC------c--EE-EeccCCCCceeEEEEEeccc----------CcC-----------
Confidence 99999999999998 25 2 22 34467889988776665322 111
Q ss_pred HHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCC
Q psy7891 304 FKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV 383 (929)
Q Consensus 304 ~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sri 383 (929)
+.+||..|..--...+ .=..+.|+++++.+.+.+.++..+ |..+.|+||+|.-
T Consensus 187 ~EeAE~~Kr~~k~~~E----------------------if~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~ 239 (277)
T COG4820 187 LEEAEQYKRGHKKGEE----------------------IFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQ 239 (277)
T ss_pred HhHHHHhhhccccchh----------------------cccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccC
Confidence 2356655553221111 112357899999999999888664 5579999999999
Q ss_pred HHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 384 PKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 384 P~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
|.+.+++++.|+..+..+..|-...-+|-|+
T Consensus 240 ~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 240 PGVEELFEKQLALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred ccHHHHHHHHhccccccCCCcceechhhhhh
Confidence 9999999999987777777766655556543
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.43 E-value=2.6e-11 Score=135.73 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=138.4
Q ss_pred ccceEE--EEecCCCCHHHH-HHHHHHHHHc------C------CcEEEEechhHHHHHHhcccccccC---CCCCCcEE
Q psy7891 160 VINEAV--IIVPGYFNQIER-QSMLKAGELA------G------LKVLQLMNDYTAVALNYGIFKRKDF---NETNPVHV 221 (929)
Q Consensus 160 ~v~~~V--ItVPa~f~~~qR-~al~~Aa~~A------G------l~~~~li~EptAAAl~y~~~~~~~~---~~~~~~~v 221 (929)
.+.+++ ...|..+...++ ..+.+..... | +..+.++.+|.+|.+++.......+ ... ...+
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~-~~~i 187 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFE-EGKV 187 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcc-cCcE
Confidence 344444 589988854453 5666554211 1 1235678999999888876533211 012 5678
Q ss_pred EEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHH
Q psy7891 222 MFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301 (929)
Q Consensus 222 lv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~ 301 (929)
+|+|+|+||||++++.- + .+ +....+....|..++...|++++...... ..+ +..
T Consensus 188 lvIDIG~~TtD~~v~~~--------~------~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~~-----~~~--~~~--- 242 (344)
T PRK13917 188 SVIDFGSGTTDLDTIQN--------L------KR-VEEESFVIPKGTIDVYKRIASHISKKEEG-----ASI--TPY--- 242 (344)
T ss_pred EEEEcCCCcEEEEEEeC--------c------EE-cccccccccchHHHHHHHHHHHHHhhCCC-----CCC--CHH---
Confidence 99999999999999861 2 22 22333446789999999999888644321 122 121
Q ss_pred HHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCc
Q psy7891 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381 (929)
Q Consensus 302 kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s 381 (929)
++.+. |... .+.+. ... .+.+ ++++.++++++++++...|...+.. ..+++.|+|+||++
T Consensus 243 ~ie~~-------l~~g---~i~~~---~~~--~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA 302 (344)
T PRK13917 243 MLEKG-------LEYG---ACKLN---QKT--VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGA 302 (344)
T ss_pred HHHHH-------HHcC---cEEeC---CCc--eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcH
Confidence 22222 2111 11111 111 1222 4678889999999999999888853 34889999999999
Q ss_pred CCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 382 riP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
++ +++.|++.|+. +...-||..|-|+|...+|..+.+
T Consensus 303 ~l--l~~~lk~~f~~-~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 303 NI--FFDSLSHWYSD-VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HH--HHHHHHHHcCC-eEEcCChHHHHHHHHHHHHHHHhc
Confidence 87 88999999984 356689999999999999875543
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.31 E-value=2.7e-10 Score=131.47 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccc-cCCC
Q psy7891 140 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRK-DFNE 215 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~-~~~~ 215 (929)
+.+..++.|+... .++ ..-..++||.|..++..+|+.+.+.+ +..|+.-+.+..++.+|+++++..... ...
T Consensus 82 d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~- 157 (414)
T PTZ00280 82 DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELG- 157 (414)
T ss_pred HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccC-
Confidence 4455667765432 122 11235899999999999999988877 555888899999999999876432211 000
Q ss_pred CCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccC
Q psy7891 216 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFE 295 (929)
Q Consensus 216 ~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~ 295 (929)
+ ..+-||+|+|+|+|+++-|. .| +-+........+||.+++..|.++|.++.. .+..
T Consensus 158 g-~~tglVVDiG~~~T~i~PV~--------~G-------~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~ 214 (414)
T PTZ00280 158 G-TLTGTVIDSGDGVTHVIPVV--------DG-------YVIGSSIKHIPLAGRDITNFIQQMLRERGE-------PIPA 214 (414)
T ss_pred C-ceeEEEEECCCCceEEEEEE--------CC-------EEcccceEEecCcHHHHHHHHHHHHHHcCC-------CCCc
Confidence 1 34669999999999998775 25 111111123479999999999999865321 1111
Q ss_pred CHHHHHHHHHHHHHhhhhccCCC-----------------ceeEEEeecccCcceEEEEeHHHHH---HHHHHH-H----
Q psy7891 296 NPRAVAKLFKEAGRLKNVLSANN-----------------EHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDL-F---- 350 (929)
Q Consensus 296 ~~~~~~kL~~~aek~K~~LS~~~-----------------~~~v~ie~l~~~~d~~~~itR~efe---~l~~~l-~---- 350 (929)
. ..+..++.+|+.+..-. ...+.++...++....+.|..+.|. -++.|- +
T Consensus 215 ~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~ 289 (414)
T PTZ00280 215 E-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEW 289 (414)
T ss_pred H-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCcc
Confidence 0 01123455555443210 0012222222233456778877764 233331 1
Q ss_pred -hHHHHHHHHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC
Q psy7891 351 -DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV 396 (929)
Q Consensus 351 -~~i~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~ 396 (929)
..+.++|.+++..+..+ .+-.+.|+|+||+|.+|.+.++|.+.+..
T Consensus 290 ~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 290 TTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred CCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 24677788888776432 22356799999999999999999988863
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.28 E-value=1.4e-10 Score=133.33 Aligned_cols=312 Identities=14% Similarity=0.151 Sum_probs=178.6
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-----ceeecHHHHHhhhhCCCChHhhhHHhcCCC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 99 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-----~~~~G~~A~~~~~~~p~~t~~~~K~llG~~ 99 (929)
..+|-||+|+.++++++.....|- ..+||+++.... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~---------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~-------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPR---------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RS-------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-S---------EEEESEEEEESSSSSSSSCEETHHHHHT---GT--------------
T ss_pred CCEEEEECCCceEEEEECCCCCCC---------CcCCCccccccccccceeEEeecccccc---hh--------------
Confidence 567899999999999997555343 235888876433 34677663320 00
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHH
Q psy7891 100 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQS 179 (929)
Q Consensus 100 ~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~a 179 (929)
...+...+.++. +.--+.+..++.++....- .....-..++++.|..++..+|+.
T Consensus 58 -----------------------~~~~~~p~~~g~-i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 -----------------------NLELRSPIENGV-IVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp -----------------------GEEEEESEETTE-ESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHH
T ss_pred -----------------------heeeeeeccccc-ccccccccccccccccccc-ccccccceeeeeccccCCchhhhh
Confidence 000111112222 2223445666776655321 112234569999999999999998
Q ss_pred HHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEE
Q psy7891 180 MLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258 (929)
Q Consensus 180 l~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~ 258 (929)
+.+.+ +..|+.-+.+++++.+|+++++. .+-||+|+|++.|.|+-|. .| +-+.
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~-----------~tglVVD~G~~~t~v~pV~--------dG-------~~~~ 166 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGR-----------TTGLVVDIGYSSTSVVPVV--------DG-------YVLP 166 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTB-----------SSEEEEEESSS-EEEEEEE--------TT-------EE-G
T ss_pred hhhhhhcccccceeeeeeccccccccccc-----------ccccccccceeeeeeeeee--------ec-------cccc
Confidence 87766 56799999999999999988763 3459999999999998774 25 1111
Q ss_pred EEecCCCcchHHHHHHHHHHHHHH-hhhhcccCC---Ccc-CCHHHHHHHHHHHHHhhhhc---cC------------CC
Q psy7891 259 GVGYDRTLGGLEMQIRLRDFLGKK-FNEMKKTTK---DVF-ENPRAVAKLFKEAGRLKNVL---SA------------NN 318 (929)
Q Consensus 259 ~~~~d~~lGG~~~D~~l~~~l~~~-f~~~~~~~~---d~~-~~~~~~~kL~~~aek~K~~L---S~------------~~ 318 (929)
.......+||.+++..|.++|..+ +........ ... ........-...++.+|+.+ +. ..
T Consensus 167 ~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 246 (393)
T PF00022_consen 167 HSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENP 246 (393)
T ss_dssp GGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTT
T ss_pred cccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccccccccccc
Confidence 111224699999999999999884 111000000 000 00000001111122222221 11 11
Q ss_pred ceeEEEeecccCcceEEEEeHHHHHHHHHHHHh----------------HHHHHHHHHHHHcCCCCC--CccEEEEEcCC
Q psy7891 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFD----------------RVGYPVEQALKSSAVPMD--VISQVILVGAG 380 (929)
Q Consensus 319 ~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~----------------~i~~~i~~~L~~a~~~~~--~I~~ViLvGG~ 380 (929)
...+.+ -++. .+.+..+.| .+++.+|+ .+.++|.+++..+..... -...|+|+||+
T Consensus 247 ~~~~~l---Pdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 247 EKSYEL---PDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp TEEEE----TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred ceeccc---cccc--ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 112222 2332 566666555 33343333 577888888887654322 24689999999
Q ss_pred cCCHHHHHHHHHHhCC--------ccCCCC-CchHHHHhhHHHHHHhh
Q psy7891 381 TRVPKVQEKITKVVGV--------ELSKNL-NTDEAAALGAVYKAADL 419 (929)
Q Consensus 381 sriP~v~~~l~~~f~~--------~i~~~~-n~deaVA~GAa~~aa~~ 419 (929)
|++|.+.++|.+.+.. ++.... ++..++=+||+++|..-
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 9999999999887752 223333 78889999999998743
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.19 E-value=2.1e-09 Score=119.70 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=128.3
Q ss_pred ccceEEEEecCCCCHHHHHHHHHHHHHc---------CCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCce
Q psy7891 160 VINEAVIIVPGYFNQIERQSMLKAGELA---------GLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 230 (929)
Q Consensus 160 ~v~~~VItVPa~f~~~qR~al~~Aa~~A---------Gl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT 230 (929)
.+..+|+..|..+...||..+++...-. -+.-+.++.+|.+|.+.|......... . ...++|+|+|++|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~-~-~~~~lVIDIG~~T 178 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLT-G-KEQSLIIDPGYFT 178 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCccc-C-cCcEEEEecCCCe
Confidence 4567999999999999999998876531 224567899999998887654322111 2 5678999999999
Q ss_pred EEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHh
Q psy7891 231 TTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRL 310 (929)
Q Consensus 231 ~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~ 310 (929)
+|+.++. .+ .+ +....+....|-.++-..|.+.+.+++.. +...+...+.. +
T Consensus 179 tD~~~~~--------~~------~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~------~~~~~~~~i~~---~---- 230 (320)
T TIGR03739 179 FDWLVAR--------GM------RL-VQKRSGSVNGGMSDIYRLLAAEISKDIGT------PAYRDIDRIDL---A---- 230 (320)
T ss_pred eeeehcc--------CC------EE-cccccCCchhHHHHHHHHHHHHHHhhcCC------CCccCHHHHHH---H----
Confidence 9998764 12 22 33445556789888888888888777644 21111111111 1
Q ss_pred hhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy7891 311 KNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 390 (929)
Q Consensus 311 K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l 390 (929)
|..... +.+ + +. .+.|+ +.++ .....++++..-|...+ + ...+++.|+|+||++. .+++.|
T Consensus 231 ---l~~g~~--~~~---~-gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l 291 (320)
T TIGR03739 231 ---LRTGKQ--PRI---Y-QK--PVDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAV 291 (320)
T ss_pred ---HHhCCc--eee---c-ce--ecCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHH
Confidence 111110 001 1 11 11122 1122 22333333333333333 1 1236889999999987 667899
Q ss_pred HHHhCC-ccCCCCCchHHHHhhHHHHH
Q psy7891 391 TKVVGV-ELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 391 ~~~f~~-~i~~~~n~deaVA~GAa~~a 416 (929)
++.|+. .+....||..|.|+|-..+|
T Consensus 292 ~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 292 KAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 999984 45566789999999987665
No 40
>PTZ00452 actin; Provisional
Probab=99.17 E-value=1.3e-09 Score=123.81 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
+.+..++.|+....- .....-..++||-|...+..+|+.|.+.. +..++..+.+.+.+.++++++| .
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g-----------~ 147 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG-----------K 147 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC-----------C
Confidence 344456666643211 11222356899999999999999887766 5568888889999998887765 2
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~ 298 (929)
.+-||+|+|.|.|+++-|. .| +-+........+||.+++..|.+.|..+- . .+... .
T Consensus 148 ~tglVVDiG~~~t~v~PV~--------dG-------~~l~~~~~r~~~gG~~lt~~L~~lL~~~~-----~--~~~~~-~ 204 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPVF--------EG-------HQIPQAITKINLAGRLCTDYLTQILQELG-----Y--SLTEP-H 204 (375)
T ss_pred ceeeeecCCCCcceEEEEE--------CC-------EEeccceEEeeccchHHHHHHHHHHHhcC-----C--CCCCH-H
Confidence 4669999999999998765 25 22222222346999999999988875421 0 11110 0
Q ss_pred HHHHHHHHHHHhhhhccCCCc------------eeEEEe-ecccCcceEEEEeHHHHHHHHHHHHh---------HHHHH
Q psy7891 299 AVAKLFKEAGRLKNVLSANNE------------HFAQIE-GLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYP 356 (929)
Q Consensus 299 ~~~kL~~~aek~K~~LS~~~~------------~~v~ie-~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~ 356 (929)
. +..++.+|+.++.-.. ...... .|-++. .+.|..+.| .+.+.+|+ .+.++
T Consensus 205 ~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~--~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~ 277 (375)
T PTZ00452 205 Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGN--ILTIKSQKF-RCSEILFQPKLIGLEVAGIHHL 277 (375)
T ss_pred H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCC--EEEeehHHh-cCcccccChhhcCCCCCChhHH
Confidence 0 0112333333321100 000001 122232 456776666 23333332 35677
Q ss_pred HHHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 357 VEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 357 i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
|.+++..+... ..-...|+|+||+|.+|.+.++|...+.. ++..+.+...++=+|+++.|.
T Consensus 278 i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 278 AYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 77777776432 22356899999999999999998877641 122233444566678877775
No 41
>PTZ00281 actin; Provisional
Probab=99.13 E-value=1.4e-09 Score=123.80 Aligned_cols=233 Identities=13% Similarity=0.112 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCC
Q psy7891 141 LVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN 217 (929)
Q Consensus 141 l~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~ 217 (929)
.+..++.|+... .+. ..-..++||-|.+....+|+.|.+.+ +..|+.-+.+...+.+++++++
T Consensus 82 ~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g----------- 147 (376)
T PTZ00281 82 DMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG----------- 147 (376)
T ss_pred HHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC-----------
Confidence 444566665431 222 22346889999999999999988755 6678888899999999987765
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
..+-||+|+|.+.|.++-|. .| +-+........+||.+++..|.+.|..+-. .+.. .
T Consensus 148 ~~tglVVDiG~~~t~v~PV~--------dG-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~-~ 204 (376)
T PTZ00281 148 RTTGIVMDSGDGVSHTVPIY--------EG-------YALPHAILRLDLAGRDLTDYMMKILTERGY-------SFTT-T 204 (376)
T ss_pred CceEEEEECCCceEEEEEEE--------ec-------ccchhheeeccCcHHHHHHHHHHHHHhcCC-------CCCc-H
Confidence 24669999999999987554 14 222222233579999999999988754311 1110 1
Q ss_pred HHHHHHHHHHHHhhhhccCCC------------ceeEEEe-ecccCcceEEEEeHHHHHHHHHHHHh---------HHHH
Q psy7891 298 RAVAKLFKEAGRLKNVLSANN------------EHFAQIE-GLIDEIDFKLLVTRAEFEALNEDLFD---------RVGY 355 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~------------~~~v~ie-~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~ 355 (929)
.- ...++.+|+.+.--. ....... .|-++. .+.|..+.| .+.+.||+ .+.+
T Consensus 205 -~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~-~~~E~LF~P~~~~~~~~gi~~ 277 (376)
T PTZ00281 205 -AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERF-RCPEALFQPSFLGMESAGIHE 277 (376)
T ss_pred -HH---HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHe-eCcccccChhhcCCCCCCHHH
Confidence 00 122444454432110 0001111 122222 355665544 22333443 4667
Q ss_pred HHHHHHHHcCCCC--CCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 356 PVEQALKSSAVPM--DVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 356 ~i~~~L~~a~~~~--~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
+|.+++..+..+. .-.+.|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 278 ~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 278 TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 7777877664321 2246799999999999999998887751 123334556677788887775
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.12 E-value=5.8e-09 Score=117.87 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccc-cccCCCCCCc-EEEEEEcCCceEEEEEEEEEeeccccCCcccC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK-RKDFNETNPV-HVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 251 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~-~~~~~~~~~~-~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~ 251 (929)
....+.+.++++.||+++..+.-+|.|.+-.+.+.. ....... .. .++++|+|+++|+++++. .|
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~-~~~~~~lvdiG~~~t~l~i~~--------~g---- 208 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTY-RLTDAALVDIGATSSTLNLLH--------PG---- 208 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccc-cCceEEEEEECCCcEEEEEEE--------CC----
Confidence 456778889999999999999888888765553110 0000011 33 499999999999999987 24
Q ss_pred CCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCc
Q psy7891 252 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEI 331 (929)
Q Consensus 252 ~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~ 331 (929)
.+. ......+||.+|+..|++.+. +. ..+||+.|..-.... ..
T Consensus 209 --~~~---~~r~i~~G~~~i~~~i~~~~~------------~~---------~~~Ae~~k~~~~~~~-----------~~ 251 (348)
T TIGR01175 209 --RML---FTREVPFGTRQLTSELSRAYG------------LN---------PEEAGEAKQQGGLPL-----------LY 251 (348)
T ss_pred --eEE---EEEEeechHHHHHHHHHHHcC------------CC---------HHHHHHHHhcCCCCC-----------ch
Confidence 221 122356999999988875431 11 245777776432111 00
Q ss_pred ceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccC--C-------
Q psy7891 332 DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELS--K------- 400 (929)
Q Consensus 332 d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~--~------- 400 (929)
-.+++++.++++..-|.+.|.-. ......++.|+|+||+++++.+.+.+++.||.++. .
T Consensus 252 ----------~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~ 321 (348)
T TIGR01175 252 ----------DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMAL 321 (348)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhccc
Confidence 02345556666666666666432 22334689999999999999999999999983221 0
Q ss_pred ----------CCCchHHHHhhHHHHH
Q psy7891 401 ----------NLNTDEAAALGAVYKA 416 (929)
Q Consensus 401 ----------~~n~deaVA~GAa~~a 416 (929)
..+|..++|.|+|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 322 DAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 1234667888887764
No 43
>PTZ00004 actin-2; Provisional
Probab=99.11 E-value=2.7e-09 Score=121.56 Aligned_cols=235 Identities=12% Similarity=0.075 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 216 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~ 216 (929)
+.+..++.|+.. ..++ ..-..+++|.|.+.+..+|+.+.+.+ +..|+..+.++.++.+|+++++
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g---------- 147 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG---------- 147 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC----------
Confidence 445566666432 1222 22346889999999999998777665 6679999999999999987765
Q ss_pred CCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCC
Q psy7891 217 NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 296 (929)
Q Consensus 217 ~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~ 296 (929)
..+-+|+|+|++.|+++-|. .| +-+........+||.+++..|.+.|..+-. .+..
T Consensus 148 -~~tglVVDiG~~~t~v~pV~--------dG-------~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~- 203 (378)
T PTZ00004 148 -RTTGIVLDSGDGVSHTVPIY--------EG-------YSLPHAIHRLDVAGRDLTEYMMKILHERGT-------TFTT- 203 (378)
T ss_pred -CceEEEEECCCCcEEEEEEE--------CC-------EEeecceeeecccHHHHHHHHHHHHHhcCC-------CCCc-
Confidence 24569999999999998765 25 222222333579999999999998854311 1111
Q ss_pred HHHHHHHHHHHHHhhhhccCCC------------c-eeEEEe-ecccCcceEEEEeHHHHH---HHHHHH------HhHH
Q psy7891 297 PRAVAKLFKEAGRLKNVLSANN------------E-HFAQIE-GLIDEIDFKLLVTRAEFE---ALNEDL------FDRV 353 (929)
Q Consensus 297 ~~~~~kL~~~aek~K~~LS~~~------------~-~~v~ie-~l~~~~d~~~~itR~efe---~l~~~l------~~~i 353 (929)
... ..-++..|+.+..-. . ...... .|-++. .+.|..+.|. -++.|- ...+
T Consensus 204 -~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi 277 (378)
T PTZ00004 204 -TAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGI 277 (378)
T ss_pred -HHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCCh
Confidence 111 112333443331100 0 000111 122332 3455655542 233332 2346
Q ss_pred HHHHHHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 354 GYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 354 ~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
.++|.+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 278 ~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 278 HELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 67778888776432 22346799999999999999998887751 122234455666677777664
No 44
>PTZ00466 actin-like protein; Provisional
Probab=99.10 E-value=4.3e-09 Score=119.60 Aligned_cols=235 Identities=12% Similarity=0.113 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
+.+..++.|+.+... ....-..+++|-|+.++..+|+.+.+.+ +..|+.-+.+.+.+.+|+++++ .
T Consensus 87 d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g-----------~ 153 (380)
T PTZ00466 87 NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG-----------K 153 (380)
T ss_pred HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC-----------C
Confidence 345556666643211 1112346889999999999999887665 6678888899999999887765 3
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~ 298 (929)
.+-+|+|+|.+.|.++-|. .| +-+........+||.+++.-|.+.|.+. ....+..
T Consensus 154 ~tglVVD~G~~~t~v~PV~--------~G-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~---- 209 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSIY--------EG-------YSITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNTS---- 209 (380)
T ss_pred ceEEEEeCCCCceEEEEEE--------CC-------EEeecceeEecCchhHHHHHHHHHHHhc-----CCCCCcH----
Confidence 4679999999999997664 25 2222223335799999999999887532 1100100
Q ss_pred HHHHHHHHHHHhhhhccC---C--------CceeEEEe-ecccCcceEEEEeHHHHHHHHHHHHh---------HHHHHH
Q psy7891 299 AVAKLFKEAGRLKNVLSA---N--------NEHFAQIE-GLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPV 357 (929)
Q Consensus 299 ~~~kL~~~aek~K~~LS~---~--------~~~~v~ie-~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i 357 (929)
. -+..++.+|+.+.. + ........ .|-++ ..+.|..+.|. +.+.+|+ .+.++|
T Consensus 210 ~---~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg--~~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i 283 (380)
T PTZ00466 210 A---EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDG--SQILIGSERYR-APEVLFNPSILGLEYLGLSELI 283 (380)
T ss_pred H---HHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCC--cEEEEchHHhc-CcccccCccccCCCCCCHHHHH
Confidence 1 11223344443321 0 00000111 12222 24556666552 3333333 456777
Q ss_pred HHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 358 EQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 358 ~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
.+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. .+....+...++=+||+++|.
T Consensus 284 ~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 284 VTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 7777776432 22356799999999999999999888742 122233445566678877765
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.08 E-value=4.6e-09 Score=118.06 Aligned_cols=184 Identities=23% Similarity=0.284 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
...-..+.++++.|||++..+=-++.|.+-.|...............++++|+|+.++.++++. .|
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--------~g------ 200 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--------NG------ 200 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--------TT------
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--------CC------
Confidence 3456678889999999986664444443322322111111111156899999999999999987 24
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcce
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDF 333 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~ 333 (929)
.+.. .-...+||.++++.|++.+.-.+ .+|+..|..-+-..
T Consensus 201 ~~~f---~R~i~~G~~~l~~~i~~~~~i~~---------------------~~Ae~~k~~~~l~~--------------- 241 (340)
T PF11104_consen 201 KPIF---SRSIPIGGNDLTEAIARELGIDF---------------------EEAEELKRSGGLPE--------------- 241 (340)
T ss_dssp EEEE---EEEES-SHHHHHHHHHHHTT--H---------------------HHHHHHHHHT-------------------
T ss_pred EEEE---EEEEeeCHHHHHHHHHHhcCCCH---------------------HHHHHHHhcCCCCc---------------
Confidence 2221 11247999999999997753322 23555554321100
Q ss_pred EEEEeHHHHHHHHHHHHhHHHHHHHHHHHH--cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc---------CCCC
Q psy7891 334 KLLVTRAEFEALNEDLFDRVGYPVEQALKS--SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL---------SKNL 402 (929)
Q Consensus 334 ~~~itR~efe~l~~~l~~~i~~~i~~~L~~--a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i---------~~~~ 402 (929)
+...+.+.+.++++..-|.+.|+- +......|+.|+|+||++++|.+.+.|.+.+|.++ ....
T Consensus 242 ------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~ 315 (340)
T PF11104_consen 242 ------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDP 315 (340)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--T
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCc
Confidence 222345555666666666666552 22334589999999999999999999999998322 1111
Q ss_pred ----------CchHHHHhhHHHHH
Q psy7891 403 ----------NTDEAAALGAVYKA 416 (929)
Q Consensus 403 ----------n~deaVA~GAa~~a 416 (929)
.|..++|.|.|+.+
T Consensus 316 ~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 316 KINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhhhhhhhhHHHHHHHHhhcC
Confidence 25678999998864
No 46
>KOG0679|consensus
Probab=98.64 E-value=1.5e-06 Score=93.48 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
+++.++++|..+.-- +....-.-++||-|++=+.+.|+.+.+.+ +...+....|..+++++|++-| .
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-----------r 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-----------R 153 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-----------C
Confidence 566777777764221 11222356899999999999998877765 6667778888888888887655 4
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~ 282 (929)
.+.||+|+|+++|.|+=|. .| .+--.++.- ..|||+.++..+.++|..+
T Consensus 154 stalVvDiGa~~~svsPV~--------DG------~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPVH--------DG------YVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CceEEEEecCCCceeeeee--------cc------eEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 6789999999999998765 25 232333333 5899999999999999876
No 47
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.63 E-value=8.1e-07 Score=98.72 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=96.9
Q ss_pred cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcE-EEEEEecCCCcch
Q psy7891 190 KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV-SVLGVGYDRTLGG 268 (929)
Q Consensus 190 ~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~-~v~~~~~d~~lGG 268 (929)
..+.++.|+.||.+.+...-. . ...+||+|+||+|+|++++. | .+ .+-.+.+...+|-
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-----~-~~~~lVVDIGG~T~Dv~~v~---------~------~~~~~~~~~~~~~~Gv 199 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-----E-DESVLVVDIGGRTTDVAVVR---------G------GLPDISKCSGTPEIGV 199 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------T-TSEEEEEEE-SS-EEEEEEE---------G------GG--EEEEEEETTSST
T ss_pred eeEEEEcccHHHHHHHHHhhc-----c-cCcEEEEEcCCCeEEeeeec---------C------CccccchhccCCchhH
Confidence 356789999999988765521 1 46799999999999999886 2 12 2233445567999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHH
Q psy7891 269 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNED 348 (929)
Q Consensus 269 ~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~ 348 (929)
..+-..+.+.|...... . +.....++.+.. +-+..++. ...+.+ .++++.++++.
T Consensus 200 s~~~~~I~~~l~~~~~~-------~--s~~~~~~ii~~~-~~~~~~~~----------~i~~~~-----~~~~v~~~i~~ 254 (318)
T PF06406_consen 200 SDLYDAIAQALRSAGID-------T--SELQIDDIIRNR-KDKGYLRQ----------VINDED-----VIDDVSEVIEE 254 (318)
T ss_dssp HHHHHHHHHHTT--SBH-------H--HHHHHHHHHHTT-T-HHHHHH----------HSSSHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-------C--cHHHHHHHHHhh-hccceecc----------cccchh-----hHHHHHHHHHH
Confidence 88888877777651111 0 001111111100 00001110 000100 13344455555
Q ss_pred HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC---CccCCCCCchHHHHhhHH
Q psy7891 349 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAV 413 (929)
Q Consensus 349 l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~---~~i~~~~n~deaVA~GAa 413 (929)
.++++..-|.+.+.. ..+++.|+|+||++ ..+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 255 ~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 255 AVEELINRILRELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 555555555554432 34788999999997 567889999987 366678899999999964
No 48
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.62 E-value=7.5e-07 Score=95.51 Aligned_cols=173 Identities=14% Similarity=0.197 Sum_probs=100.4
Q ss_pred EEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHH
Q psy7891 193 QLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQ 272 (929)
Q Consensus 193 ~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D 272 (929)
..++|.+|-+........ ..=.|+|+||..+-+.++. . | .+.-.........|+-.|.
T Consensus 73 ~~~~ei~~~~~g~~~~~~--------~~~~vidiGgqd~k~i~~~-~-------g------~~~~~~~n~~ca~Gtg~f~ 130 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--------EARGVIDIGGQDSKVIKID-D-------G------KVDDFTMNDKCAAGTGRFL 130 (248)
T ss_pred CceEEhhHHHHHHHHHCC--------CCCEEEEecCCeeEEEEEC-C-------C------cEeeeeecCcccccccHHH
Confidence 357788877654433322 2225999999988887775 2 4 3322334444567888888
Q ss_pred HHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEee-cccCcceEEEEeHHHHHHHHHHHHh
Q psy7891 273 IRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG-LIDEIDFKLLVTRAEFEALNEDLFD 351 (929)
Q Consensus 273 ~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~-l~~~~d~~~~itR~efe~l~~~l~~ 351 (929)
+.+++.|--.+.+ +..+ +.+.+....-+....+..+. +.... .-..++ ++++..++.
T Consensus 131 e~~a~~l~~~~~e--------------~~~~---~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~ 188 (248)
T TIGR00241 131 EVTARRLGVSVEE--------------LGSL---AEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVYE 188 (248)
T ss_pred HHHHHHcCCCHHH--------------HHHH---HhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHH
Confidence 7777665311111 1111 11111111111111222211 11100 011233 345555555
Q ss_pred HHHHHHHHHHHHcCCCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 352 RVGYPVEQALKSSAVPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 352 ~i~~~i~~~L~~a~~~~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
.+..-+.+.+...+ ++ .|+|+||.++.|.+.+.+.+.++.++..+-++..+.|+|||+
T Consensus 189 ~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 189 SIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 55555555554332 44 799999999999999999999998888888999999999997
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=8.9e-06 Score=86.60 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCC-CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcE
Q psy7891 177 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN-PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV 255 (929)
Q Consensus 177 R~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~-~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~ 255 (929)
-....+|+++|||...-+==|.-|.-=+|...- ..+...+ ...|+|+|+|+.++.++++. .|
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~-~~~~~~~a~~~vav~~Igat~s~l~vi~--------~g-------- 213 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLA-SQFGPEEAAMKVAVFDIGATSSELLVIQ--------DG-------- 213 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHH-HHhCCchhhhhheeeeecccceEEEEEE--------CC--------
Confidence 345678999999987544344444433443111 1121110 33479999999999999987 24
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEE
Q psy7891 256 SVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKL 335 (929)
Q Consensus 256 ~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~ 335 (929)
..+ +.-+..+||+.++..|.+.+--.+ ..++.+|....-.. |..
T Consensus 214 k~l-y~r~~~~g~~Qlt~~i~r~~~L~~---------------------~~a~~~k~~~~~P~-------------~y~- 257 (354)
T COG4972 214 KIL-YTREVPVGTDQLTQEIQRAYSLTE---------------------EKAEEIKRGGTLPT-------------DYG- 257 (354)
T ss_pred eee-eEeeccCcHHHHHHHHHHHhCCCh---------------------hHhHHHHhCCCCCC-------------chh-
Confidence 122 233467999999988876542111 12445554332221 010
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~ 395 (929)
-+-+.....++.++|...|+-.+..++ ..+|++++|.||+.++-.+.+.|.+.++
T Consensus 258 ---~~vl~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 258 ---SEVLRPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 112223444555555555555555453 4589999999999999999999999987
No 50
>PRK15027 xylulokinase; Provisional
Probab=98.58 E-value=1.1e-06 Score=103.85 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=63.0
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
..+|.+|-..+-+-+.-....+-+.|+..+. .++.|+++||+++++.+.+++.+.||.++....+.+++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467777665444433333333345555554 4778999999999999999999999988866666777899999999
Q ss_pred HHhhcCCc
Q psy7891 416 AADLSTGF 423 (929)
Q Consensus 416 aa~~s~~f 423 (929)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 99776544
No 51
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.53 E-value=3.6e-06 Score=96.45 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=113.6
Q ss_pred EEEEcCccceEEEEEECCCceEEeeCCCCCcc-ceEEEE-EecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHH
Q psy7891 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRK-TPTLVA-FHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 105 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g~~~~iv~n~~~~r~-~PS~V~-~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v 105 (929)
+-||.||.++++++..+..|.-+..+..+++. ..++.. -..+.+.+|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~------------------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL------------------- 68 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-cc-------------------
Confidence 89999999999999988777777766666664 333332 123345555555432110 00
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHH
Q psy7891 106 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
......+..+ .+.-=+.+..+++|+...- ..+. ..-..+++|-|..+...+|..+.+.
T Consensus 69 ------------------~~~~~p~~~g-~i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 69 ------------------LELRYPIENG-IILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred ------------------ceeecccccC-ccCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 0011111111 1111123344555554432 1111 2234699999999999998877665
Q ss_pred H-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 184 G-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 184 a-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
+ +...+..+.+...+.+++++.+.. ..+.+|+|+|.+.|+|+=|. .| +.+.....
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~---------~~~g~ViD~G~~~t~v~PV~--------DG-------~~l~~a~~ 184 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSS---------DETGLVIDSGDSVTHVIPVV--------DG-------IVLPKAVK 184 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCC---------CCceEEEEcCCCceeeEeee--------cc-------ccccccce
Confidence 5 444555555555555555444321 24789999999999988654 24 22222233
Q ss_pred CCCcchHHHHHHHHHHHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~ 282 (929)
...+||++++..|.+.|...
T Consensus 185 ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 185 RIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred eeecCcHHHHHHHHHHHhhc
Confidence 45699999999999988874
No 52
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.46 E-value=1.5e-06 Score=102.18 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=59.8
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
..-+|.+|-..+-+-+.-....+.+.|++.+. ..++.|.++||+++.|.+.+++.+.||.++...-+ .|+.++|||+
T Consensus 360 ~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~ 436 (465)
T TIGR02628 360 LNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAM 436 (465)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHH
Confidence 34467666554444333333334445554431 24678999999999999999999999988855544 5788999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.+
T Consensus 437 ~a~~a~G~~ 445 (465)
T TIGR02628 437 FGFYGVGEY 445 (465)
T ss_pred HHHHhcCcc
Confidence 998766543
No 53
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.38 E-value=4.9e-05 Score=92.37 Aligned_cols=273 Identities=16% Similarity=0.176 Sum_probs=155.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHHhhcc--------------cccceEEEEecCCCCHHHHHHHHHHHHHc--------CCc-
Q psy7891 134 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGELA--------GLK- 190 (929)
Q Consensus 134 ~~~~~eel~a~~L~~lk~~a~~~~~--------------~~v~~~VItVPa~f~~~qR~al~~Aa~~A--------Gl~- 190 (929)
-.||=..+++++|..+.-+|-.+.+ ...+.+++|||......+|+.++++++.| |+.
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3577778888888888877754432 33568999999999999999888888754 532
Q ss_pred --------------------EEEEechhHHHHHHhcc------------------cccccC-----CCCCCcEEEEEEcC
Q psy7891 191 --------------------VLQLMNDYTAVALNYGI------------------FKRKDF-----NETNPVHVMFYDMG 227 (929)
Q Consensus 191 --------------------~~~li~EptAAAl~y~~------------------~~~~~~-----~~~~~~~vlv~D~G 227 (929)
+.-=-+|.|+.=+-|.+ .+.... .....-+|.-+|+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 11112333333222211 111111 11124578999999
Q ss_pred CceEEEEEEEEEeeccccCCcccCCCcEEEE----EEecCCCcchHHHHHHH-HHHHHHHhhhhcc-c------------
Q psy7891 228 AWSTTVSIVSYQVVKTKERGFVETHPQVSVL----GVGYDRTLGGLEMQIRL-RDFLGKKFNEMKK-T------------ 289 (929)
Q Consensus 228 ggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~----~~~~d~~lGG~~~D~~l-~~~l~~~f~~~~~-~------------ 289 (929)
|||||..|-.|..... .| ....+. -..| -.+.|+||=..+ ..++...+....+ .
T Consensus 575 GGTTDL~It~Y~ld~G--~g-----~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~L 646 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDDG--QG-----SNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRL 646 (1002)
T ss_pred CCcceeeEEEEEeccC--Cc-----ceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHH
Confidence 9999999999874431 12 122221 1222 357888886544 4555555443211 0
Q ss_pred -CCCccCC-HH-------------HHHHHHHHHHHhhhhccCCCceeEEEeec---------------------------
Q psy7891 290 -TKDVFEN-PR-------------AVAKLFKEAGRLKNVLSANNEHFAQIEGL--------------------------- 327 (929)
Q Consensus 290 -~~d~~~~-~~-------------~~~kL~~~aek~K~~LS~~~~~~v~ie~l--------------------------- 327 (929)
+.+-... .+ ...+++.+||..=.. +........+..+
T Consensus 647 fG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~ 725 (1002)
T PF07520_consen 647 FGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPD 725 (1002)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCC
Confidence 1110000 00 122355555553211 0111111111111
Q ss_pred ccCcceEEEEeHHHHHHHHH---HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc------
Q psy7891 328 IDEIDFKLLVTRAEFEALNE---DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL------ 398 (929)
Q Consensus 328 ~~~~d~~~~itR~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i------ 398 (929)
++=.|+.+.|+..++...+. -.+..+...+-+++..- +-|-|+|+|=-||+|.||.+++......+
T Consensus 726 Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l 800 (1002)
T PF07520_consen 726 FDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPL 800 (1002)
T ss_pred cceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEec
Confidence 11134568899999888664 44444444444444433 45689999999999999999999976322
Q ss_pred --------------CCCCCchHHHHhhHHHHHHhhc
Q psy7891 399 --------------SKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 399 --------------~~~~n~deaVA~GAa~~aa~~s 420 (929)
.+--||...||.||.+++....
T Consensus 801 ~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 801 HGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 2335899999999988776554
No 54
>PRK10331 L-fuculokinase; Provisional
Probab=98.34 E-value=6.3e-06 Score=97.04 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=57.9
Q ss_pred EEEeHHHHHHHHHHHH-hHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 335 LLVTRAEFEALNEDLF-DRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 335 ~~itR~efe~l~~~l~-~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
..-+|.++-..+-+-+ -.+...++ .|++.+ ...++.|.++||++|.+.+.+++.+.||.++...- ..|++++|||
T Consensus 356 ~~~~~~~l~rAvlEgia~~~~~~~~-~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA 431 (470)
T PRK10331 356 LNTTRGHFYRAALEGLTAQLKRNLQ-VLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAA 431 (470)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHH
Confidence 3446776654433322 23333333 344332 12578999999999999999999999998885444 4578899999
Q ss_pred HHHHhhcCCc
Q psy7891 414 YKAADLSTGF 423 (929)
Q Consensus 414 ~~aa~~s~~f 423 (929)
+.|+.-.+.|
T Consensus 432 ~la~~~~G~~ 441 (470)
T PRK10331 432 MFGWYGVGEF 441 (470)
T ss_pred HHHHHhcCCC
Confidence 9998766544
No 55
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.29 E-value=9.6e-06 Score=96.04 Aligned_cols=81 Identities=25% Similarity=0.174 Sum_probs=54.3
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
.-+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.+...+++.+.||.++.... ..|+.+.|+|+
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~-~~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVPE-VEEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEecC-cccchHHHHHH
Confidence 34677776655544444444444555544 43 566899999999999999999999998876444 34555555555
Q ss_pred HHHhhc
Q psy7891 415 KAADLS 420 (929)
Q Consensus 415 ~aa~~s 420 (929)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555444
No 56
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.23 E-value=2.2e-05 Score=93.30 Aligned_cols=82 Identities=9% Similarity=0.020 Sum_probs=56.9
Q ss_pred eHHHHHHHH-HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALN-EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~-~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.+|-..+ +.+.-.+...+....+..+. .++.|.++||+++.+.+.+++.+.||.++...-++ |+.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHH
Confidence 456554432 33333344444433332343 57899999999999999999999999888555544 68899999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.+
T Consensus 447 ~~~~G~~ 453 (505)
T TIGR01314 447 LKALGLI 453 (505)
T ss_pred HHhcCcc
Confidence 8766543
No 57
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.17 E-value=0.00017 Score=85.69 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=56.7
Q ss_pred EeHHHHHHHH-HHHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 337 VTRAEFEALN-EDLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 337 itR~efe~l~-~~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
-+|.++-..+ +.+.-.+...+ +.|+. .+. .++.|.++||++|.+.+.+++.+.||.++.. ....|+.++|||+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~-e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~-~~~~e~~a~GaA~ 446 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVL-DAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVER-PVVAETTALGAAY 446 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEe-cCcccchHHHHHH
Confidence 3466554433 33333344444 33442 344 4778999999999999999999999988854 3456789999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.|
T Consensus 447 ~A~~~~G~~ 455 (498)
T PRK00047 447 LAGLAVGFW 455 (498)
T ss_pred HHhhhcCcC
Confidence 998766543
No 58
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.17 E-value=0.00013 Score=86.83 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=56.2
Q ss_pred eHHHHHHHHH-HHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 338 TRAEFEALNE-DLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 338 tR~efe~l~~-~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
+|.++-..+- .+.-.+...+ +.|++ .+. .++.|.++||+++.+.+.+++.+.||.++...- ..|+.++|||+.
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~-~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVI-ESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALL 450 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHH
Confidence 5666544332 3333333333 33333 344 377899999999999999999999998875444 556889999999
Q ss_pred HHhhcCCc
Q psy7891 416 AADLSTGF 423 (929)
Q Consensus 416 aa~~s~~f 423 (929)
|+.-.+.|
T Consensus 451 aa~a~G~~ 458 (504)
T PTZ00294 451 AGLAVGVW 458 (504)
T ss_pred HHhhcCcc
Confidence 98766543
No 59
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.07 E-value=0.00075 Score=72.70 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=41.3
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhCCccC-CCCCchHHHHhhHHHHHHh
Q psy7891 373 QVILVGAGTRVPKVQEKITKVVGVELS-KNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 373 ~ViLvGG~sriP~v~~~l~~~f~~~i~-~~~n~deaVA~GAa~~aa~ 418 (929)
.|+|+||.++.|.+++.+++.+|.++. .+.+|..+.|+|||++|.-
T Consensus 242 ~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 589999999999999999999997665 5778999999999999864
No 60
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.06 E-value=0.00031 Score=83.26 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=57.9
Q ss_pred EEeHHHHHHHHH-HHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 336 LVTRAEFEALNE-DLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 336 ~itR~efe~l~~-~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
.-+|.++-..+- .+.-.+...+ +.|+.. +. .++.|.++||++|.+.+.+++.+.||.++.. .+..|+.|+|||
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA 441 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAA 441 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHH
Confidence 335666655433 3333333333 344432 43 4788999999999999999999999988855 445678899999
Q ss_pred HHHHhhcCCc
Q psy7891 414 YKAADLSTGF 423 (929)
Q Consensus 414 ~~aa~~s~~f 423 (929)
+.|+.-.+.|
T Consensus 442 ~~a~~~~G~~ 451 (493)
T TIGR01311 442 YAAGLAVGYW 451 (493)
T ss_pred HHHHhhcCcC
Confidence 9998766543
No 61
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.05 E-value=8.4e-05 Score=87.94 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=57.2
Q ss_pred EeHHHHHHHHH-HHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 337 VTRAEFEALNE-DLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 337 itR~efe~l~~-~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
-++.++-..+- .+.-.+...+ +.|++. +. .++.|.++||++|.+.+.+++.+.||.++...- ..|+.++|||+
T Consensus 359 ~~~~~l~railEgia~~~~~~~-~~l~~~~~~---~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~ 433 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSL-DILREAGGI---PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAI 433 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHH
Confidence 34666544333 3333333333 344433 23 478999999999999999999999998775544 66789999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.|
T Consensus 434 ~a~~~~g~~ 442 (481)
T TIGR01312 434 LAAWALGEK 442 (481)
T ss_pred HHHHhcCCC
Confidence 998776543
No 62
>PLN02295 glycerol kinase
Probab=98.01 E-value=0.00047 Score=82.07 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=44.9
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
.++.|.++||+++.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~-~~~~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVR-PADIETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEe-cCccccHHHHHHHHHHhhcCcC
Confidence 5788999999999999999999999988844 4456789999999998766543
No 63
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=98.01 E-value=0.00022 Score=85.36 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=60.7
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
.-+|.+|-+.+-+-+.-....+-+.|+..+. .++.|+++||+ ++.+.+.+++.+.||.++....++ |+.++|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 3467776655544333333334445555554 57899999999 999999999999999888666554 688999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.+
T Consensus 480 lA~~~~G~~ 488 (536)
T TIGR01234 480 FAAVAAGVY 488 (536)
T ss_pred HHHHHcCCc
Confidence 998766543
No 64
>KOG0676|consensus
Probab=97.81 E-value=0.00026 Score=78.64 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEE
Q psy7891 143 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVM 222 (929)
Q Consensus 143 a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vl 222 (929)
..|.+|+...-... ......+++|-|..+...-|+.+.+..=. -|++-.+.=..-| .+ |+.. -.+=+
T Consensus 82 e~iw~~if~~~L~~-~Pee~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~qa-vl-ya~g---------~ttG~ 148 (372)
T KOG0676|consen 82 EKIWHHLFYSELLV-APEEHPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAIQA-VL-YASG---------RTTGL 148 (372)
T ss_pred HHHHHHHHHHhhcc-CcccCceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHHHH-HH-HHcC---------CeeEE
Confidence 55666665211111 11235799999999999999888765422 2344333322222 22 5433 34569
Q ss_pred EEEcCCceEEEE-EEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHH
Q psy7891 223 FYDMGAWSTTVS-IVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK 281 (929)
Q Consensus 223 v~D~GggT~dvs-vv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~ 281 (929)
|+|+|.|-+.+. |+. | +.+...-....+||++++.-|...|.+
T Consensus 149 VvD~G~gvt~~vPI~e---------G-------~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 149 VVDSGDGVTHVVPIYE---------G-------YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred EEEcCCCceeeeeccc---------c-------cccchhhheecccchhhHHHHHHHHHh
Confidence 999999977543 433 5 334444455679999999877777766
No 65
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.81 E-value=0.0022 Score=71.88 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=42.7
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHH
Q psy7891 373 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 373 ~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa 417 (929)
.|+++||.++.+.+.+.+.+.+|.++..+.+|..+.|+|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 499999999999999999999998898999999999999999985
No 66
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.79 E-value=0.0046 Score=67.65 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=53.7
Q ss_pred HHHHHHHHhHHHHHHHH-HHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 343 EALNEDLFDRVGYPVEQ-ALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~-~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
|+++..+...+..-+.. +++.- ++.+. |+|+||.+....|.+.+.+.+|.++..+.+|.-.-|.|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~--~i~~~--iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRV--DIEEP--IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc--CCCCC--EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 44555544444333322 44433 23332 999999999999999999999999999999999999999999863
No 67
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.75 E-value=0.00015 Score=81.91 Aligned_cols=190 Identities=11% Similarity=0.084 Sum_probs=101.1
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHH--------HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEE
Q psy7891 162 NEAVIIVPGYFNQIERQSMLKAGE--------LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTV 233 (929)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa~--------~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dv 233 (929)
.-.+||.....-++-++.+..+.. .||+++..++. |-|++.+.... . . ...++++|+|||||++
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E-----k-e~gVa~IDIGgGTT~i 160 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E-----R-NTRVLNIDIGGGTANY 160 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h-----c-cCceEEEEeCCCceEE
Confidence 346777766544444444333211 26776666666 77777655422 1 2 6889999999999999
Q ss_pred EEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCcc-CCHHHHHHHHHHHHHhhh
Q psy7891 234 SIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF-ENPRAVAKLFKEAGRLKN 312 (929)
Q Consensus 234 svv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~-~~~~~~~kL~~~aek~K~ 312 (929)
+++. .| . +.. .....+||+.+... . .+ .+. -.| ...+|++.+ -.
T Consensus 161 aVf~--------~G------~--l~~-T~~l~vGG~~IT~D----------~---~~-~i~yis~-~~~~l~~~~---~~ 205 (475)
T PRK10719 161 ALFD--------AG------K--VID-TACLNVGGRLIETD----------S---QG-RVTYISP-PGQMILDEL---GL 205 (475)
T ss_pred EEEE--------CC------E--EEE-EEEEecccceEEEC----------C---CC-CEEEECh-HHHHHHHHc---CC
Confidence 9987 24 1 222 23357899865421 0 00 011 112 122332221 11
Q ss_pred hccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHH-------HHHHc-CCC-CCCccEEEEEcCCcCC
Q psy7891 313 VLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQ-------ALKSS-AVP-MDVISQVILVGAGTRV 383 (929)
Q Consensus 313 ~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~-------~L~~a-~~~-~~~I~~ViLvGG~sri 383 (929)
.++. --.++.+++..+|..+.+-+.+.|.. .|-.. .+. ...++.|.+.||-+..
T Consensus 206 ~~~~-----------------G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 206 AITD-----------------GRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred Cccc-----------------cccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1111 12466788888888777666665541 11111 222 3578999999997654
Q ss_pred HHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 384 PKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 384 P~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
-|-+ ...+ ..--.|--+-+|.|+.....
T Consensus 269 iy~~-~~~~-------~f~yGDiG~lLg~ai~~~~~ 296 (475)
T PRK10719 269 IYRH-QPAD-------PFRYGDIGPLLATALHEHPR 296 (475)
T ss_pred eecC-CcCC-------ccccCcHHHHHHHHHhhChh
Confidence 3221 1111 11234556667776665433
No 68
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.65 E-value=0.01 Score=63.28 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=37.5
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhC-Cc----cCCCCCchHHHHhhHHHHH
Q psy7891 373 QVILVGAGTRVPKVQEKITKVVG-VE----LSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 373 ~ViLvGG~sriP~v~~~l~~~f~-~~----i~~~~n~deaVA~GAa~~a 416 (929)
.|+|.||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999995 23 4456688899999999875
No 69
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.57 E-value=0.0069 Score=69.70 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=53.8
Q ss_pred ceEEEEeHHHHHHHHHHH---HhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc----------
Q psy7891 332 DFKLLVTRAEFEALNEDL---FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL---------- 398 (929)
Q Consensus 332 d~~~~itR~efe~l~~~l---~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i---------- 398 (929)
|+.+.|.-.++++.+-.. +......+-+++.. -+-|.++|+|--+|.|.||..++......+
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 344566666666654432 22222222223221 245679999999999999999988765221
Q ss_pred ----------CCCCCchHHHHhhHHHHHHhhc
Q psy7891 399 ----------SKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 399 ----------~~~~n~deaVA~GAa~~aa~~s 420 (929)
.+--||...+|.||.+++..+.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 2335899999999988876544
No 70
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.50 E-value=0.0021 Score=67.19 Aligned_cols=188 Identities=20% Similarity=0.174 Sum_probs=96.5
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
+..|..+...=-|+.+|.+....... . +..+.|+||||||||++++.-. | .+.-+..+|
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-----t-~~PlaIlDmG~GSTDAsii~~~-------g------~v~~iHlAG-- 164 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-----T-DKPLAILDMGGGSTDASIINRD-------G------EVTAIHLAG-- 164 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT--------SSEEEEEE-SSEEEEEEE-TT-------S-------EEEEEEE---
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-----C-CCCeEEEecCCCcccHHHhCCC-------C------cEEEEEecC--
Confidence 45688888788899998887654432 1 6779999999999999998722 4 455544443
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCce---------eEE-Eee--------
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEH---------FAQ-IEG-------- 326 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~---------~v~-ie~-------- 326 (929)
.|+-++..|...|- + ++ +.-||..|+---+.-+. .+. ++.
T Consensus 165 --AG~mVTmlI~sELG------------l--~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~fa 222 (332)
T PF08841_consen 165 --AGNMVTMLINSELG------------L--ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFA 222 (332)
T ss_dssp --SHHHHHHHHHHHCT---------------S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTT
T ss_pred --CchhhHHHHHHhhC------------C--CC------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHee
Confidence 35555555543321 0 01 11244554421110000 000 000
Q ss_pred ---cccCcceEEEE----eHHHHHHHHHHHHhHH-HHHHHHHHHHc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-
Q psy7891 327 ---LIDEIDFKLLV----TRAEFEALNEDLFDRV-GYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVG- 395 (929)
Q Consensus 327 ---l~~~~d~~~~i----tR~efe~l~~~l~~~i-~~~i~~~L~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~- 395 (929)
+.. .+--+.| +-++...+=...-+++ ..-..++|+.- .-...+|+.|+|+|||+-=.-|-++|.+.+.
T Consensus 223 Rvvi~~-~~~lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~ 301 (332)
T PF08841_consen 223 RVVILK-EDGLVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSH 301 (332)
T ss_dssp SEEEEC-TTEEEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCT
T ss_pred EEEEec-CCceeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhh
Confidence 000 1112222 2222222211111111 11223344432 2345689999999999998888888888774
Q ss_pred -------CccCCCCCchHHHHhhHHHHH
Q psy7891 396 -------VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 396 -------~~i~~~~n~deaVA~GAa~~a 416 (929)
..+.-..-|.-|||.|.++.-
T Consensus 302 y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 302 YGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp TT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred CcceeeccccccccCchHHHHHHHHHhh
Confidence 245556678899999998754
No 71
>KOG0797|consensus
Probab=96.86 E-value=0.0096 Score=66.93 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=84.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHhhccccc-----ceEEEEecCCCCHHHHHHHHH-HHHHcCCcEEEEechhHHHHHHhcc
Q psy7891 134 ELYHVEELVAMLLHKAREYASVSAGQVI-----NEAVIIVPGYFNQIERQSMLK-AGELAGLKVLQLMNDYTAVALNYGI 207 (929)
Q Consensus 134 ~~~~~eel~a~~L~~lk~~a~~~~~~~v-----~~~VItVPa~f~~~qR~al~~-Aa~~AGl~~~~li~EptAAAl~y~~ 207 (929)
..+|..++++.+-+-+.-...+.+..+. -.+|+-||-.|....-+-+.. -....||.-..++-|..||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3567777776654443333455555443 368999999999776554444 4466799999999999999877665
Q ss_pred cccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHH
Q psy7891 208 FKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK 281 (929)
Q Consensus 208 ~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~ 281 (929)
. .-.|||||+-.|.++.|+ .|.. +..+.--...||.||++.++-++..
T Consensus 275 s-----------s~CVVdiGAQkTsIaCVE--------dGvs-------~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S-----------SACVVDIGAQKTSIACVE--------DGVS-------LPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c-----------ceeEEEccCcceeEEEee--------cCcc-------ccCceEEeccCCchHHHHHHHHHHh
Confidence 3 347899999999999887 3521 1111222357999999999866654
No 72
>PRK04123 ribulokinase; Provisional
Probab=96.85 E-value=0.016 Score=69.66 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=55.9
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-..+-+-+.--...+-+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.++.+.- ..|+.++|||+.|
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA 484 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFA 484 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHH
Confidence 56665443333222222333344444443 47789999999 9999999999999998774444 5678899999999
Q ss_pred HhhcCC
Q psy7891 417 ADLSTG 422 (929)
Q Consensus 417 a~~s~~ 422 (929)
+.-.+.
T Consensus 485 ~~~~G~ 490 (548)
T PRK04123 485 AVAAGA 490 (548)
T ss_pred HHHhcc
Confidence 876554
No 73
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.81 E-value=0.069 Score=61.42 Aligned_cols=225 Identities=15% Similarity=0.083 Sum_probs=124.4
Q ss_pred HHHHHHHHHcCCcE----EEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 178 QSMLKAGELAGLKV----LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 178 ~al~~Aa~~AGl~~----~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
....++|...||.. ..-+=+.-|.++.-+.- ..+-|++=+|-+||.+.+..-. .. -.|. -.+
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~---------~~~~l~~I~GTStC~m~~s~~~--~~-v~Gv--wGp 297 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA---------QPGSLAMIAGTSTCHMLLSEKP--RF-VPGV--WGP 297 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC---------CCCeEEEEeccceEEEEecCCc--ee-cCcc--ccc
Confidence 34567888888852 22222223333332211 1233455578888888775521 00 0120 011
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhc-------ccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEee
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMK-------KTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~-------~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~ 326 (929)
....+-.++-..-||..-.-.|.+||.+...--. +.+.++. .....++..-+++++...+.... ...++.
T Consensus 298 y~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~ 374 (544)
T COG1069 298 YDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDW 374 (544)
T ss_pred cccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEeccc
Confidence 2223333333445888888889999887642200 0011111 12344455555666666544332 233443
Q ss_pred cccC------cceEEEE-------eHHHHHHHHHHH---HhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy7891 327 LIDE------IDFKLLV-------TRAEFEALNEDL---FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 390 (929)
Q Consensus 327 l~~~------~d~~~~i-------tR~efe~l~~~l---~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l 390 (929)
++++ .+++-.| +.+.+-.+..-+ +.-=...|-+++++.|+ .|+.|++.||-.+.|.+.+++
T Consensus 375 f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~ 451 (544)
T COG1069 375 FNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLY 451 (544)
T ss_pred ccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHH
Confidence 3322 2233222 333222222222 22223456667777777 688999999999999999999
Q ss_pred HHHhCCccCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 391 TKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 391 ~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
.+..|..+... ..++++++|+|+.||.-.+.|
T Consensus 452 aDvtg~~v~i~-~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 452 ADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred HHhcCCeEEee-cccchhhhHHHHHHHHHhccC
Confidence 99999766555 678999999999999777543
No 74
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.71 E-value=0.0049 Score=63.50 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=42.8
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
.++.|+++||.++.|.+.+++.+.||.++...-+ .|+.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4889999999999999999999999987755554 89999999999974
No 75
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.48 E-value=0.061 Score=59.91 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=40.1
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhC-----CccCCCCCchHHHHhhHHHHH
Q psy7891 372 SQVILVGAGTRVPKVQEKITKVVG-----VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 372 ~~ViLvGG~sriP~v~~~l~~~f~-----~~i~~~~n~deaVA~GAa~~a 416 (929)
..|+|+||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999995 456778899999999999875
No 76
>PRK13317 pantothenate kinase; Provisional
Probab=96.30 E-value=0.1 Score=56.67 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=42.1
Q ss_pred CccEEEEEc-CCcCCHHHHHHHHHHh---CCccCCCCCchHHHHhhHHHHHH
Q psy7891 370 VISQVILVG-AGTRVPKVQEKITKVV---GVELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 370 ~I~~ViLvG-G~sriP~v~~~l~~~f---~~~i~~~~n~deaVA~GAa~~aa 417 (929)
.+..|+++| |.++.|.+++.+.+++ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999988 46777888999999999999875
No 77
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.14 E-value=0.087 Score=60.16 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=100.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEe---chhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEE
Q psy7891 163 EAVIIVPGYFNQIERQSMLKAGELAGLKVLQLM---NDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li---~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 239 (929)
.++||==+--.++.|..+..-+..||==|+.-- -|..-|+-..|.... .......|+=+|+||||+.+++++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~---S~~~~~~V~NiDIGGGTtN~avf~-- 161 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL---SKEHHTVVANIDIGGGTTNIAVFD-- 161 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH---hhhhCCeEEEEEeCCCceeEEEEE--
Confidence 355665555566667777766677764333321 233323322221111 111167899999999999999987
Q ss_pred eeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCcc-CCHHHHHHHHHHHHHhhhhccCCC
Q psy7891 240 VVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF-ENPRAVAKLFKEAGRLKNVLSANN 318 (929)
Q Consensus 240 ~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~-~~~~~~~kL~~~aek~K~~LS~~~ 318 (929)
.| ++++++. .++||+.|- |...+ .+. -.| ...+|++++ -..+...
T Consensus 162 ------~G--------~v~~T~c-l~IGGRLi~----------~d~~g----~i~yis~-~~~~l~~~~---~~~~~~G- 207 (473)
T PF06277_consen 162 ------NG--------EVIDTAC-LDIGGRLIE----------FDPDG----RITYISP-PIQRLLEEL---GLELSVG- 207 (473)
T ss_pred ------CC--------EEEEEEE-EeeccEEEE----------EcCCC----cEEEECH-HHHHHHHHh---CCCCCcc-
Confidence 24 4566554 579998431 21100 111 112 122333221 1111111
Q ss_pred ceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHH--------HHHc-CCC-CCCccEEEEEcCCcCCHHHHH
Q psy7891 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQA--------LKSS-AVP-MDVISQVILVGAGTRVPKVQE 388 (929)
Q Consensus 319 ~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~--------L~~a-~~~-~~~I~~ViLvGG~sriP~v~~ 388 (929)
-.++.++++.+|+.+.+-+.+.|... |-.. .+. ...++.|.+.||-+..-|=+
T Consensus 208 ----------------~~~~~~~l~~i~~~Ma~~l~~~i~~~~~~~~~~~L~~~~~l~~~~~~~~v~fSGGVad~iy~~- 270 (473)
T PF06277_consen 208 ----------------DRADPEQLRKICRRMAELLVEVIGGKPLSPLAEELLTTPPLPDDYPIDAVTFSGGVADCIYRP- 270 (473)
T ss_pred ----------------ccCCHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCcCCCCCEEEEechHHHHhhCC-
Confidence 14677888888877666655554322 1111 222 35789999999965322211
Q ss_pred HHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 389 KITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 389 ~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
.......-.|--+-+|.|+......
T Consensus 271 -------~~~d~~~yGDIG~lLg~ai~~~~~~ 295 (473)
T PF06277_consen 271 -------EEADPFRYGDIGPLLGQAIRESPLL 295 (473)
T ss_pred -------CCCCccccCcHHHHHHHHHHhChhh
Confidence 1112223456667777777665443
No 78
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.01 E-value=0.016 Score=69.46 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=61.5
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHH---HcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhh
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALK---SSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALG 411 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~---~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~G 411 (929)
..-+|..+..++.-+++-+.--++.+++ +.+. .++.|.++||+++.+.+.+++.+++|.++...- ..|+.++|
T Consensus 408 ~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~alG 483 (541)
T TIGR01315 408 MDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADACDMPVLIPY-VNEAVLHG 483 (541)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHHCCeeEecC-hhHHHHHH
Confidence 3446766666666666655544444444 3343 478899999999999999999999998885554 45688999
Q ss_pred HHHHHHhhcCC
Q psy7891 412 AVYKAADLSTG 422 (929)
Q Consensus 412 Aa~~aa~~s~~ 422 (929)
||+.|+.-.+.
T Consensus 484 aA~lA~~~~G~ 494 (541)
T TIGR01315 484 AAMLGAKAAGT 494 (541)
T ss_pred HHHHHHHhcCc
Confidence 99999866654
No 79
>PLN02669 xylulokinase
Probab=95.78 E-value=0.024 Score=68.01 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=42.3
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 369 DVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 369 ~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
..++.|+++||+++.+.+.+++.++||..+.+.- ..++.|+||||.|+.
T Consensus 444 ~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~-~~ea~alGAA~~A~~ 492 (556)
T PLN02669 444 VPPKRIIATGGASANQSILKLIASIFGCDVYTVQ-RPDSASLGAALRAAH 492 (556)
T ss_pred CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecC-CCCchHHHHHHHHHH
Confidence 3578999999999999999999999998775444 447889999999986
No 80
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.36 E-value=0.058 Score=63.33 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=58.7
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
..-+|.++-+.+-+-+.-....+-+.|+.. +. .++.|.++||++|.+.+.+++.+.+|.++... . .|+.++|||
T Consensus 354 ~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA 428 (454)
T TIGR02627 354 IPESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNI 428 (454)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHH
Confidence 344677765544433332333333444442 43 47789999999999999999999999888543 3 679999999
Q ss_pred HHHHhhcCCc
Q psy7891 414 YKAADLSTGF 423 (929)
Q Consensus 414 ~~aa~~s~~f 423 (929)
+.|+.-.+.+
T Consensus 429 ~~a~~~~G~~ 438 (454)
T TIGR02627 429 GVQLMALDEI 438 (454)
T ss_pred HHHHHhcCCc
Confidence 9998766654
No 81
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.14 E-value=0.077 Score=62.54 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=56.2
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.+|-..+-+-+.-....+.+.|+.. +. .++.|.++||++|.+.+.+++.+++|.++.... .|+.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 566655444333332233333344432 33 467899999999999999999999998885433 379999999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8766654
No 82
>KOG2517|consensus
Probab=95.03 E-value=0.25 Score=57.34 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=58.5
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 346 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 346 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
++-+--++..+|+..-.+.+ ..|+.+.+.||.|+-|.+-+.+.+.+|.++.++.+.|- +++|||+.|+..++.+
T Consensus 393 leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 393 LEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 33444455555554444443 46778999999999999999999999999999999887 9999999999888763
No 83
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.94 E-value=0.08 Score=63.31 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=56.2
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-..+-+-+.-....+-+.+++ .+. .++.|.++||++|.+.+.+++.+.||.++...-+ .|+.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHH
Confidence 56665544333332222333344444 244 4789999999999999999999999988865554 468899999999
Q ss_pred HhhcCC
Q psy7891 417 ADLSTG 422 (929)
Q Consensus 417 a~~s~~ 422 (929)
+.-.+.
T Consensus 455 ~~~~G~ 460 (520)
T PRK10939 455 GVGAGI 460 (520)
T ss_pred HHHhCC
Confidence 876654
No 84
>KOG0677|consensus
Probab=94.49 E-value=0.54 Score=48.86 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=110.6
Q ss_pred ceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEe
Q psy7891 162 NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 240 (929)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~ 240 (929)
..+.+|-|+--....|..|.+.. +.-||.-+.+-- .|+.--|+.-- ..=+|+|-|-|-|-+.-|.-
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvai--QAVLtLYAQGL---------~tGvVvDSGDGVTHi~PVye-- 168 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAI--QAVLTLYAQGL---------LTGVVVDSGDGVTHIVPVYE-- 168 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehH--HHHHHHHHhcc---------cceEEEecCCCeeEEeeeec--
Confidence 36789999988888888776654 667887654432 34333454321 23378999999998775541
Q ss_pred eccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCC---
Q psy7891 241 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN--- 317 (929)
Q Consensus 241 ~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~--- 317 (929)
| +..-.-.....+.|++++.-|.+.|..+=..- ....|.. .....|+.|..-
T Consensus 169 ------~-------~~l~HLtrRldvAGRdiTryLi~LLl~rGYaf-N~tADFE-----------TVR~iKEKLCYisYd 223 (389)
T KOG0677|consen 169 ------G-------FVLPHLTRRLDVAGRDITRYLIKLLLRRGYAF-NHTADFE-----------TVREIKEKLCYISYD 223 (389)
T ss_pred ------c-------eehhhhhhhccccchhHHHHHHHHHHhhcccc-ccccchH-----------HHHHHHhhheeEeec
Confidence 2 11111122345899999999998887652210 1111211 122233333211
Q ss_pred --------CceeEEEee--cccCcceEEEEeHHHHH---HHHHHHH-----hHHHHHHHHHHHHcCCCC--CCccEEEEE
Q psy7891 318 --------NEHFAQIEG--LIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVEQALKSSAVPM--DVISQVILV 377 (929)
Q Consensus 318 --------~~~~v~ie~--l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~~~L~~a~~~~--~~I~~ViLv 377 (929)
-++++-+++ |-++. .+++--+.|| .+++|.+ ..+.+++-++++.+.++. +--.+|+|.
T Consensus 224 ~e~e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLS 301 (389)
T KOG0677|consen 224 LELEQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLS 301 (389)
T ss_pred hhhhhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeec
Confidence 122333333 22332 3455556665 4555432 234556666666665432 234689999
Q ss_pred cCCcCCHHHHHHHHHHhC
Q psy7891 378 GAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 378 GG~sriP~v~~~l~~~f~ 395 (929)
||++--|.+-..|.+.+.
T Consensus 302 GGstMYPGLPSRLEkElk 319 (389)
T KOG0677|consen 302 GGSTMYPGLPSRLEKELK 319 (389)
T ss_pred CCcccCCCCcHHHHHHHH
Confidence 999999999888877664
No 85
>KOG2531|consensus
Probab=94.06 E-value=0.15 Score=57.22 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=46.6
Q ss_pred CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 365 AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 365 ~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
|.....-..|+++||.||-..|-+.|.+.||..+..- ...+++++|+||.|+.-
T Consensus 437 g~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~ya 490 (545)
T KOG2531|consen 437 GFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAYA 490 (545)
T ss_pred cCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHHH
Confidence 5555677899999999999999999999999777544 88899999999998753
No 86
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=93.71 E-value=0.19 Score=55.10 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHH
Q psy7891 346 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 346 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~ 414 (929)
++-..+++.+.|+......+..+.+. .++.+||.+ |++-..|.+.+| ..+..+..+.-+-|.||++
T Consensus 217 ~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 217 VRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 33344445555555544446544432 345556665 777788888888 5666666678888999875
No 87
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=93.43 E-value=1.8 Score=46.85 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=39.0
Q ss_pred CCccEEEEEcC-CcCCHHHHHHHHHHhC---CccCCCCCchHHHHhhHHH
Q psy7891 369 DVISQVILVGA-GTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 369 ~~I~~ViLvGG-~sriP~v~~~l~~~f~---~~i~~~~n~deaVA~GAa~ 414 (929)
..+..|+++|| .+..|.+++.+...+. .+....-|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35789999999 6778999999998886 4667778899999999985
No 88
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.30 E-value=0.2 Score=47.18 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=26.7
Q ss_pred EEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcc--hHHHH--HHHHHHHH
Q psy7891 221 VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLG--GLEMQ--IRLRDFLG 280 (929)
Q Consensus 221 vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lG--G~~~D--~~l~~~l~ 280 (929)
|+++|+|++++.+.+++.. . ...+.+++.+.....| |..|. ..+..-|.
T Consensus 1 i~~iDiGs~~~~~~i~~~~--~---------~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG--S---------DGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT--E---------EEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeC--C---------CCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999842 1 2256677655333322 55555 55554443
No 89
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=93.22 E-value=0.71 Score=52.78 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=40.9
Q ss_pred CcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHH
Q psy7891 330 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKIT 391 (929)
Q Consensus 330 ~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~ 391 (929)
+..-.+.||..+.+++.. --.-+..-++-+|++++++.+||+.|+|.||+.+-=-+++.+.
T Consensus 288 ~~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 344568899999876532 2234556677888999999999999999999988777766653
No 90
>PRK10854 exopolyphosphatase; Provisional
Probab=92.88 E-value=1.6 Score=52.01 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
.+..+-...|+++ ++|+...=|.+.| |...... . ....+|+|+|||+|.++++.
T Consensus 101 fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~---~-~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 101 FLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP---E-KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC---C-CCCeEEEEeCCCeEEEEEec
Confidence 3444455679997 7777776666655 5544332 1 35689999999999999986
No 91
>KOG0681|consensus
Probab=92.20 E-value=1.2 Score=51.03 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=70.5
Q ss_pred eeHHHHHHHHHHHHHHHHHhhccccc-ceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccC
Q psy7891 136 YHVEELVAMLLHKAREYASVSAGQVI-NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDF 213 (929)
Q Consensus 136 ~~~eel~a~~L~~lk~~a~~~~~~~v-~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~ 213 (929)
++--+++..+|.|+....--. +..| ..+++|-+..=...+|+.|.+-. +.-|+.-+.+=-+.. |.+.+..
T Consensus 91 vtNwel~E~ilDY~F~~LG~~-~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~hN~-- 162 (645)
T KOG0681|consen 91 VTNWELMEQILDYIFGKLGVD-GQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYHNY-- 162 (645)
T ss_pred cccHHHHHHHHHHHHHhcCCC-ccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhhcc--
Confidence 444456666777765543211 1123 35788888777777888877665 556887554422211 1111111
Q ss_pred CCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHH
Q psy7891 214 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 214 ~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~ 282 (929)
........||+++|..+|-|-.|- .| .. ++....-.++||...-.-|.++|.-+
T Consensus 163 ~~~~~~~~liis~g~~~T~vipvl--------dG------~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 163 GKSSNKSGLIISMGHSATHVIPVL--------DG------RL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred CcccCcceEEEecCCCcceeEEEe--------cC------ch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 111134689999999999887654 25 22 23334456799988765555555443
No 92
>PRK09557 fructokinase; Reviewed
Probab=91.94 E-value=6 Score=43.59 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=28.3
Q ss_pred cCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 187 AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
.|+++ .+.|+..|+|++-.+..... . ..+++++.+|.| +-.+++
T Consensus 96 ~~~pv-~~~NDa~aaA~aE~~~g~~~---~-~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNREV-RLANDANCLAVSEAVDGAAA---G-KQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCCE-EEccchhHHHHHHHHhcccC---C-CCcEEEEEEccc-eEEEEE
Confidence 47864 79999999998764432211 2 567888888865 333443
No 93
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.69 E-value=0.32 Score=50.63 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEE
Q psy7891 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYD 225 (929)
Q Consensus 146 L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D 225 (929)
..+|.+..+...+.++ .|+++-..|... .++.+--.. ||| +|...-+.-.... +..++++|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~v-------------AAa-NW~Ata~~~~e~~-~dsci~VD 136 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREV-------------AAA-NWVATARFLAEEI-KDSCILVD 136 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHH-------------HHh-hhHHHHHHHHHhc-CCceEEEe
Confidence 3456666666666555 788888888664 222211111 111 1211111100011 57799999
Q ss_pred cCCceEEEEEEE
Q psy7891 226 MGAWSTTVSIVS 237 (929)
Q Consensus 226 ~GggT~dvsvv~ 237 (929)
||+.|+|+-=+.
T Consensus 137 ~GSTTtDIIPi~ 148 (330)
T COG1548 137 MGSTTTDIIPIK 148 (330)
T ss_pred cCCcccceEeec
Confidence 999999987554
No 94
>PRK09698 D-allose kinase; Provisional
Probab=90.78 E-value=29 Score=38.10 Aligned_cols=43 Identities=14% Similarity=-0.096 Sum_probs=28.5
Q ss_pred cCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 187 AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
.|+++ .+.|+..|+|++-...... . ..+++++.+|.| .-.+++
T Consensus 104 ~~~pv-~v~NDa~aaa~~E~~~~~~----~-~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCPV-FFSRDVNLQLLWDVKENNL----T-QQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCCE-EEcchHhHHHHHHHHhcCC----C-CceEEEEEecCc-eEEEEE
Confidence 47764 8999999998865433221 2 468888888877 344444
No 95
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=90.64 E-value=1.4 Score=47.59 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=18.0
Q ss_pred CcEEEEEEcCCceEEEEEEE
Q psy7891 218 PVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~ 237 (929)
...|+=+|+||||+..+++.
T Consensus 144 ~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred ceEEEEEeccCCccceeeec
Confidence 56789999999999999986
No 96
>KOG0680|consensus
Probab=90.04 E-value=3 Score=45.05 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=56.4
Q ss_pred cceEEEEecCCCCHHHHHH-HHHHHHHcCCcEEEEechhHHHHHHhc---ccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 161 INEAVIIVPGYFNQIERQS-MLKAGELAGLKVLQLMNDYTAVALNYG---IFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 161 v~~~VItVPa~f~~~qR~a-l~~Aa~~AGl~~~~li~EptAAAl~y~---~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
-.++|+|-|.+--+.-... ..--.+.-++. .+..-+.|+.+++- ..+....+. +....||+|.|.+-|-+.-+
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd--~v~kttaa~lva~~~~~~~ne~~tt~-~~~c~lVIDsGysfThIip~ 169 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFD--AVLKTTAAVLVAFTKYVRNNEDSTTT-SSECCLVIDSGYSFTHIIPV 169 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccc--eEeecCHHHhcchhhhccCCcccccc-ccceEEEEeCCCceEEEehh
Confidence 3578999998765543333 33333444554 34444444444443 222222222 26699999999998876533
Q ss_pred EEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHH
Q psy7891 237 SYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLG 280 (929)
Q Consensus 237 ~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~ 280 (929)
- .|. ...+ +.- ...+||..++..|.+++-
T Consensus 170 v--------~g~----~~~q--aV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 V--------KGI----PYYQ--AVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred h--------cCc----chhh--ceE-EeecchHHHHHHHHHHhh
Confidence 2 131 1111 111 246999999998888774
No 97
>PTZ00288 glucokinase 1; Provisional
Probab=89.68 E-value=9.1 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.5
Q ss_pred ccCCeEEEEEcCccceEEEEEECC
Q psy7891 22 SYGIAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 22 ~~~~~vvGID~GTt~s~va~~~~g 45 (929)
+....++|+|+|.||+++++++..
T Consensus 23 ~~~~~~~~~DiGgt~~R~~~~~~~ 46 (405)
T PTZ00288 23 SSGPIFVGCDVGGTNARVGFAREV 46 (405)
T ss_pred ccCCeEEEEEecCCceEEEEEecc
Confidence 345679999999999999999764
No 98
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=89.07 E-value=6.4 Score=43.61 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=39.1
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCcc---CCCCCc----hHHHHhhHHHHHHhhcCC
Q psy7891 369 DVISQVILVGAGTRVPKVQEKITKVVGVEL---SKNLNT----DEAAALGAVYKAADLSTG 422 (929)
Q Consensus 369 ~~I~~ViLvGG~sriP~v~~~l~~~f~~~i---~~~~n~----deaVA~GAa~~aa~~s~~ 422 (929)
.+.+.|+|.|-.+|+|-+.+.+.+.|+... ...+.+ -..+|.|||+.|.-+.++
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhcc
Confidence 467889999999999999888888875211 112222 234899999999888764
No 99
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=88.73 E-value=23 Score=39.19 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhh--cccccceEEEEecCCCCHHH------------HHHHHHHH-HHcCCcEEEEechhHHHH
Q psy7891 138 VEELVAMLLHKAREYASVS--AGQVINEAVIIVPGYFNQIE------------RQSMLKAG-ELAGLKVLQLMNDYTAVA 202 (929)
Q Consensus 138 ~eel~a~~L~~lk~~a~~~--~~~~v~~~VItVPa~f~~~q------------R~al~~Aa-~~AGl~~~~li~EptAAA 202 (929)
+++++..+...+.+..+.. ...++..+.|++|..++... .-.+.+.. +..|+++ .+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv-~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPV-VVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCE-EEechHHHHH
Confidence 4455555555555544332 12356677888887554221 11233333 3347764 7999999999
Q ss_pred HHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 203 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 203 l~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
++-.+..... . .++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~---~-~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGK---G-ARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccC---C-CCcEEEEEeCCcc-EEEEE
Confidence 8765433221 2 5678889999876 55554
No 100
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.67 E-value=2.2 Score=46.63 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=50.2
Q ss_pred eeeHHHH--HHHHHHHHHHHHHhhcccccceEE-EEecCCCCHHHHH-----HHHHHH-HHcCCcEEEEechhHHHHHHh
Q psy7891 135 LYHVEEL--VAMLLHKAREYASVSAGQVINEAV-IIVPGYFNQIERQ-----SMLKAG-ELAGLKVLQLMNDYTAVALNY 205 (929)
Q Consensus 135 ~~~~eel--~a~~L~~lk~~a~~~~~~~v~~~V-ItVPa~f~~~qR~-----al~~Aa-~~AGl~~~~li~EptAAAl~y 205 (929)
.++++-+ +-..|+..++.+..+ .+.++. ++ |..-|+ .+.+.. +..|+++ .+|+...=|.+.|
T Consensus 31 ~i~~e~i~r~~~~L~~f~~~~~~~---~v~~i~~vA-----TsA~R~A~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~ 101 (285)
T PF02541_consen 31 RISEEAIERAIDALKRFKEILKDY---GVEKIRAVA-----TSALREAKNSDEFLDRIKKETGIDI-EIISGEEEARLSF 101 (285)
T ss_dssp SB-HHHHHHHHHHHHHHHHHHHHT---TGSEEEEEE-----EHHHHHSTTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHC---CCCEEEEEh-----hHHHHhCcCHHHHHHHHHHHhCCce-EEecHHHHHHHHH
Confidence 3444433 334556666565544 344432 22 344443 344444 5569987 6777666555554
Q ss_pred -cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 206 -GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 206 -~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
|..... .. ....+++|+|||+|.+++++
T Consensus 102 ~gv~~~l---~~-~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 102 LGVLSSL---PP-DKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHS---TT-TSSEEEEEEESSEEEEEEEE
T ss_pred HHHHhhc---cc-cCCEEEEEECCCceEEEEEE
Confidence 333222 12 56789999999999999886
No 101
>PF13941 MutL: MutL protein
Probab=88.65 E-value=2.1 Score=49.59 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCCCCccEEEEEcCC-cCCHHHHHHHHHHhC
Q psy7891 365 AVPMDVISQVILVGAG-TRVPKVQEKITKVVG 395 (929)
Q Consensus 365 ~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~ 395 (929)
|.+...++.|+-+||. ++.|.-.++|...+.
T Consensus 380 GkDL~~v~~iIgtGGvL~h~~~~~~il~~~~~ 411 (457)
T PF13941_consen 380 GKDLTRVKYIIGTGGVLTHSPNPEEILKAALD 411 (457)
T ss_pred CcccccCCEEEEeCccccCCCCHHHHHHHHhh
Confidence 4445578899999997 788887777777764
No 102
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=88.42 E-value=2.7 Score=51.78 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...+..++..+..+ . ..+++++++.+.+.+++++.||++. ...+++.+
T Consensus 569 akN~lEs~iy~~r~~l~e~---~---------~~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k 621 (663)
T PTZ00400 569 AKNEAETLIYSVEKQLSDL---K---------DKISDADKDELKQKITKLRSTLSSE---------------DVDSIKDK 621 (663)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---------hhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3444455555555555321 1 4688899999999999999999752 24799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
.++|+..+.+++.++
T Consensus 622 ~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 622 TKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 103
>PTZ00297 pantothenate kinase; Provisional
Probab=88.20 E-value=20 Score=48.08 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=34.2
Q ss_pred CCccEEEEEcCCc-CCHHHHHHHHHHhC------CccCCCCCchHHHHhhHHHHH
Q psy7891 369 DVISQVILVGAGT-RVPKVQEKITKVVG------VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 369 ~~I~~ViLvGG~s-riP~v~~~l~~~f~------~~i~~~~n~deaVA~GAa~~a 416 (929)
.+|+.|+++|++- .-|...+.|..++. .+...--+....-|+||++..
T Consensus 1390 ~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1390 QGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred cCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 4788999999954 48999888877653 233344456678889987643
No 104
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.82 E-value=3.1 Score=51.03 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...|...+..++..+..+ . ..+++++++.+.+.+++++.||++. ...+++.|
T Consensus 528 akN~le~~i~~~~~~l~~~---~---------~~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k 580 (627)
T PRK00290 528 ARNQADSLIYQTEKTLKEL---G---------DKVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAK 580 (627)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---------ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3344556666666665421 1 4688999999999999999999753 34899999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
+++|+..+++++.++
T Consensus 581 ~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 581 TEELTQASQKLGEAM 595 (627)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 105
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=86.60 E-value=5.1 Score=40.81 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEechhHHHHH
Q psy7891 175 IERQSMLKAGELAGLKVLQLMNDYTAVAL 203 (929)
Q Consensus 175 ~qR~al~~Aa~~AGl~~~~li~EptAAAl 203 (929)
...+.+..+++.|||++..++-+|.|++.
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 46778889999999999999999998874
No 106
>PTZ00107 hexokinase; Provisional
Probab=86.32 E-value=25 Score=41.20 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH----HHcCCCCCCccEEEEEcCC--cCCHHHHHHHHHHhC----Cc--cCCCCCchH
Q psy7891 339 RAEFEALNEDLFDRVGYPVEQAL----KSSAVPMDVISQVILVGAG--TRVPKVQEKITKVVG----VE--LSKNLNTDE 406 (929)
Q Consensus 339 R~efe~l~~~l~~~i~~~i~~~L----~~a~~~~~~I~~ViLvGG~--sriP~v~~~l~~~f~----~~--i~~~~n~de 406 (929)
+.-+..+|.-+..|...++.-.+ ...+.. .-..++-+-|| -..|..++.+.+++. .. ...-.-.+.
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~--~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D 447 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV--QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC
Confidence 33445566666666655544333 322321 12244555555 347777777776664 11 122234666
Q ss_pred HHHhhHHHHHHhhc
Q psy7891 407 AAALGAVYKAADLS 420 (929)
Q Consensus 407 aVA~GAa~~aa~~s 420 (929)
..-+|||+.||...
T Consensus 448 GSg~GAAl~AA~~~ 461 (464)
T PTZ00107 448 GSGKGAAIIAAMVA 461 (464)
T ss_pred chHHHHHHHHHHhc
Confidence 88999999999765
No 107
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=84.35 E-value=4.8 Score=49.02 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...|..++..+..+ . ..+++++++.+.+.+++++.||+.. ...+++.+
T Consensus 526 ~kn~lEs~iy~~r~~l~~~------~------~~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~ 578 (595)
T TIGR02350 526 ARNNADSLAYQAEKTLKEA------G------DKLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAK 578 (595)
T ss_pred HHHHHHHHHHHHHHHHHHh------h------ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3445566666666666431 1 5689999999999999999999753 22589999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
.++|+..+++++.+.
T Consensus 579 ~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 579 TEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998653
No 108
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=84.34 E-value=13 Score=41.93 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC------ccCCCCCchHHHHhhHHHHHHhh
Q psy7891 349 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV------ELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 349 l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~------~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+..-+...|.+++.... ...+.|+++||+++-|++.+.|++.++. .+....+.-||++. |+.|...
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aF--A~La~~~ 339 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAF--AWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHH--HHHHHHH
Confidence 33334444555554332 2346899999999999999999999852 22233344455544 5666543
No 109
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=84.32 E-value=68 Score=35.00 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC-------ccCCCCCchHHHHhhHHHHHH
Q psy7891 348 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV-------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 348 ~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~-------~i~~~~n~deaVA~GAa~~aa 417 (929)
.++++....+-.++...-. .-+.+.|+|-||.+..+.+.+.+++.+.. ++......+.+.++|||+.+.
T Consensus 212 ~~~~~~~~~la~~l~~l~~-~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLKA-TLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 3444444444444433210 11456788888777666555666655541 222333457788999998763
No 110
>KOG0100|consensus
Probab=84.21 E-value=5.5 Score=44.23 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcc
Q psy7891 793 NLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 855 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~ 855 (929)
..+++++++.+.+.+++...||+... .. ...|.+.|.++|+..|++|+.|.
T Consensus 591 ~Kl~~edKe~~e~av~e~~eWL~~n~---~a---------~~Ee~~ek~kele~vv~Piiskl 641 (663)
T KOG0100|consen 591 GKLSDEDKETIEDAVEEALEWLESNQ---DA---------SKEEFKEKKKELEAVVQPIISKL 641 (663)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhhcc---cc---------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998752 22 34789999999999999999776
No 111
>KOG1385|consensus
Probab=84.09 E-value=2.7 Score=47.13 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=82.1
Q ss_pred eEEEEEcCccceEEEEEECCCceE----EeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPME----IALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 101 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~----iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~ 101 (929)
.++-||-|+|-|+|-++.-...+. .+..+-=+...|=.-+|. .+|......+..||...
T Consensus 68 Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfa---------------ddp~~aA~Sl~~LLd~A-- 130 (453)
T KOG1385|consen 68 YAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFA---------------DDPEEAANSLRPLLDVA-- 130 (453)
T ss_pred EEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccC---------------CChHHHHHhHHHHHHHH--
Confidence 468899999999999885332210 111110111222222332 23333444455555332
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 102 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 102 d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
+..+|...... --+.++..-|-...+.+-...+|..+++..++...-.+..-.++|
T Consensus 131 -------~~~vP~~~~~k----TPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsI------------- 186 (453)
T KOG1385|consen 131 -------EAFVPREHWKK----TPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSI------------- 186 (453)
T ss_pred -------HhhCCHhHhcc----CceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceee-------------
Confidence 22233221111 125555555567788888999999999988744322222111222
Q ss_pred HHHHHcCCcEEEEechhHHH--HHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 182 KAGELAGLKVLQLMNDYTAV--ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAA--Al~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
+.-.+|+.-| .++|.+..-. ... ...|.++|+|||+|+++..-
T Consensus 187 ----------m~GtdEGv~aWiTiN~Llg~L~--~~~-~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 187 ----------MDGTDEGVYAWITINYLLGTLG--APG-HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ----------ccCcccceeeeeehhhhhcccC--CCC-CCceEEEEcCCceEEEEEec
Confidence 2222333322 3455443221 111 47899999999999998764
No 112
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=83.82 E-value=6.3 Score=48.52 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...|...|..++..+.. . .+ ...+++++++.+.+.+++++.||++.. .-+..++..|
T Consensus 540 akN~lEs~Iy~~r~~L~~----~-~~-----~~~~t~ee~~~l~~~l~~~~~wL~~~~------------~~~~~~~~~k 597 (653)
T PTZ00009 540 AKNGLENYCYSMKNTLQD----E-KV-----KGKLSDSDKATIEKAIDEALEWLEKNQ------------LAEKEEFEHK 597 (653)
T ss_pred HHhhhHHHHHHHHHHHhh----h-hh-----hccCCHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHH
Confidence 445555666666665543 1 12 157899999999999999999997411 1245799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
+++|...+++++.++
T Consensus 598 l~eL~~~~~pi~~r~ 612 (653)
T PTZ00009 598 QKEVESVCNPIMTKM 612 (653)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998776
No 113
>PRK09604 UGMP family protein; Validated
Probab=83.79 E-value=52 Score=36.88 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=36.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHh---CCccCCC---CCchHHHHhhHHHHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVV---GVELSKN---LNTDEAAALGAVYKA 416 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~~---~n~deaVA~GAa~~a 416 (929)
+++.|+|.||...-.++++.|.+.+ |..+..+ .-.|.+++.|+|=+-
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999988 4333322 357889999987443
No 114
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=83.41 E-value=0.37 Score=45.34 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcC---CcEEE---------Eechh-HHHHHH
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAG---LKVLQ---------LMNDY-TAVALN 204 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AG---l~~~~---------li~Ep-tAAAl~ 204 (929)
+-++.-|+...+.|+...+.++..+.++++. ...+.+.++++.++ +++-. ++..| -|+|++
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~g~----s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSIGG----SKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TTGG----GGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecCch----hHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 3345556666666777767777777776633 34445556665555 66666 67778 777754
No 115
>KOG1369|consensus
Probab=83.25 E-value=8.1 Score=44.78 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=45.9
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCc---EEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEE
Q psy7891 167 IVPGYFNQIERQSMLKAGELAGLK---VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 167 tVPa~f~~~qR~al~~Aa~~AGl~---~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 239 (929)
.++.-.+..--+.+.+|.+.-|+. +..++|+.++.-++.++.. +.+++-+=+|.||--+.+.+..
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~--------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED--------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC--------CCcEEEEEECCCccceeeeecc
Confidence 334444555567788888888775 7889999998877655443 4566666789998877777654
No 116
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=83.05 E-value=5.3 Score=47.42 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 178 QSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 178 ~al~~Aa~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
..+..+-+..|+++ ++|+...=|-+.| |.....+ . ....+|+|+|||+|.+++++
T Consensus 95 ~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~--~--~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 95 EFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTG--G--ADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccC--C--CCCEEEEEecCCeeeEEEec
Confidence 34555556679997 7777766666555 5544332 1 24589999999999999876
No 117
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=82.98 E-value=14 Score=45.46 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCC--HHHHH-HHHHHhC-C----c-----cCCCCCchHHHHhh
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV--PKVQE-KITKVVG-V----E-----LSKNLNTDEAAALG 411 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sri--P~v~~-~l~~~f~-~----~-----i~~~~n~deaVA~G 411 (929)
++...++.+...+-.++...-...++.+.|+|-||-++- +++.+ .+.+.|. + . +..-+--+.+.-.|
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~G 323 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLG 323 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHH
Confidence 444566666655555554432223345678888888633 55543 5555553 1 1 11222344567788
Q ss_pred HHHHHHh
Q psy7891 412 AVYKAAD 418 (929)
Q Consensus 412 Aa~~aa~ 418 (929)
||-++.-
T Consensus 324 aa~~~~~ 330 (638)
T PRK14101 324 VSAILAE 330 (638)
T ss_pred HHHHHHH
Confidence 8655543
No 118
>KOG0681|consensus
Probab=82.87 E-value=1.4 Score=50.73 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCCC--CccEEEEEcCCcCCHHHHHHHHHHhC--C------ccCCCCCchHHHHhhHHHHHHh
Q psy7891 353 VGYPVEQALKSSAVPMD--VISQVILVGAGTRVPKVQEKITKVVG--V------ELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 353 i~~~i~~~L~~a~~~~~--~I~~ViLvGG~sriP~v~~~l~~~f~--~------~i~~~~n~deaVA~GAa~~aa~ 418 (929)
+.+++...|...-..-. .+..|+|+||++.+|.+.+.|...+- . .+.+.-||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 34445555554321111 27899999999999999999988763 1 4456678888899999999986
No 119
>PLN03184 chloroplast Hsp70; Provisional
Probab=82.50 E-value=12 Score=46.31 Aligned_cols=68 Identities=9% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...+..++..+..+ . ..+++++++.+.+.+++++.||+.. ...+++.+
T Consensus 567 akN~lE~~iy~~r~~l~e~---~---------~~~~~eer~~l~~~l~~~e~wL~~~---------------d~~~ik~~ 619 (673)
T PLN03184 567 TKNQADSVVYQTEKQLKEL---G---------DKVPADVKEKVEAKLKELKDAIASG---------------STQKMKDA 619 (673)
T ss_pred HHHhHHHHHHHHHHHHHHH---h---------hhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3344455555566555321 1 4688899999999999999999741 23688889
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
.++|...++.+..++
T Consensus 620 ~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 620 MAALNQEVMQIGQSL 634 (673)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888764
No 120
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=81.67 E-value=7.6 Score=45.70 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=54.5
Q ss_pred eeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHH------HHHHHHHHHcCCcEEEEechhHHHHH-Hhccc
Q psy7891 136 YHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIER------QSMLKAGELAGLKVLQLMNDYTAVAL-NYGIF 208 (929)
Q Consensus 136 ~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR------~al~~Aa~~AGl~~~~li~EptAAAl-~y~~~ 208 (929)
++++ .+...+.-|+..++...+..+..+. . .-|..-| ..+..+-+..|+++ .+|+.-+=|-+ .+|..
T Consensus 49 L~~e-ai~R~~~aL~~f~e~~~~~~~~~v~-~---vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~ 122 (492)
T COG0248 49 LSEE-AIERALSALKRFAELLDGFGAEEVR-V---VATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVA 122 (492)
T ss_pred cCHH-HHHHHHHHHHHHHHHHhhCCCCEEE-E---ehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHH
Confidence 4443 4444555555555444444555532 1 1233334 35777888889987 66655544444 34544
Q ss_pred ccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 209 KRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 209 ~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
+..+ . ....+|+|+|||||.+++..
T Consensus 123 ~~~~--~--~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 123 STLP--R--KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred hcCC--C--CCCEEEEEecCCeEEEEEec
Confidence 4322 1 46789999999999999986
No 121
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=81.65 E-value=7 Score=44.91 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=59.5
Q ss_pred EeHHHHHHHH-HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 337 VTRAEFEALN-EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 337 itR~efe~l~-~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
.+|++|-+.. +.+.-++.+.++..=++++. .+..+-+=||.++..++-+.+.+++|.++.++.+ .|..|+||||.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 3556654432 33333444444444344554 5778889999999999999999999988877765 46889999999
Q ss_pred HHhhcCCcc
Q psy7891 416 AADLSTGFK 424 (929)
Q Consensus 416 aa~~s~~f~ 424 (929)
|..-.+.++
T Consensus 447 AGla~G~w~ 455 (499)
T COG0554 447 AGLAVGFWK 455 (499)
T ss_pred HhhhhCcCC
Confidence 987776443
No 122
>PRK13411 molecular chaperone DnaK; Provisional
Probab=81.04 E-value=9.5 Score=46.99 Aligned_cols=70 Identities=4% Similarity=0.067 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...+..++..+... . ..++++++..+...+++++.||.+ + . ....+++.+
T Consensus 530 akN~lEs~iy~~r~~l~~~------~------~~~~~~er~~i~~~l~~~~~wL~~----~--------~-~~~~~~~~~ 584 (653)
T PRK13411 530 LKNQADSLLYSYESTLKEN------G------ELISEELKQRAEQKVEQLEAALTD----P--------N-ISLEELKQQ 584 (653)
T ss_pred HHHHHHHHHHHHHHHHHHh------h------ccCCHHHHHHHHHHHHHHHHHHhc----C--------C-CCHHHHHHH
Confidence 4455566666666665431 1 578999999999999999999964 1 1 255799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
+++|+..+.+++.+.
T Consensus 585 ~~el~~~~~~i~~~~ 599 (653)
T PRK13411 585 LEEFQQALLAIGAEV 599 (653)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 123
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=80.38 E-value=27 Score=38.75 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHHHHh
Q psy7891 714 KIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHRE 754 (929)
Q Consensus 714 ~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e 754 (929)
.|+++++||-+ ++. +++.+.+++.+.++..-||--++.|
T Consensus 9 ~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~FNe 47 (379)
T PF11593_consen 9 KLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQFNE 47 (379)
T ss_pred cHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHHHH
Confidence 58899999983 444 9999999999999999998876543
No 124
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=80.19 E-value=7.4 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=18.8
Q ss_pred cCCeEEEEEcCccceEEEEEEC
Q psy7891 23 YGIAVMSVDLGSEWMKVAIVSP 44 (929)
Q Consensus 23 ~~~~vvGID~GTt~s~va~~~~ 44 (929)
....++.||||.||.+|+.+.-
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l 94 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVL 94 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEe
Confidence 3468999999999999998853
No 125
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=80.09 E-value=6.5 Score=42.57 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-----CccCCCCCchHHHHhhHHHHH
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-----VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-----~~i~~~~n~deaVA~GAa~~a 416 (929)
++....+.+...+..++...+..... |+|+||..+...+++.+.+.+. .++.....|....|.|||++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44444455555556666555433222 9999999999877777755554 234566788999999999986
No 126
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=79.80 E-value=7 Score=43.15 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcccccceE-EEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcE
Q psy7891 144 MLLHKAREYASVSAGQVINEA-VIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVH 220 (929)
Q Consensus 144 ~~L~~lk~~a~~~~~~~v~~~-VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~ 220 (929)
..|...++.+..+ .+.++ +++--+.=...-+..+.+.. ...|+++ ++|+...=|.+.| +...... ...
T Consensus 56 ~~l~~f~~~~~~~---~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~-----~~~ 126 (300)
T TIGR03706 56 EALKRFAELLRGF---PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLP-----IAD 126 (300)
T ss_pred HHHHHHHHHHHhC---CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCC-----CCC
Confidence 4555556655544 33332 22222222222234455555 4579987 7888877777766 3332221 122
Q ss_pred EEEEEcCCceEEEEEEE
Q psy7891 221 VMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 221 vlv~D~GggT~dvsvv~ 237 (929)
.+++|+|||+|.++++.
T Consensus 127 ~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK 143 (300)
T ss_pred cEEEEecCCeEEEEEec
Confidence 49999999999999875
No 127
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=78.26 E-value=44 Score=37.19 Aligned_cols=203 Identities=15% Similarity=0.164 Sum_probs=96.0
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccC------CCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEE
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDF------NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLG 259 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~------~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~ 259 (929)
..|+..+.|||+=+|.|++...-...++ ........+|+-.|.|==-..++. . + . ...++.
T Consensus 89 ~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~-~-------~----~-~~~v~~ 155 (316)
T PF02685_consen 89 RLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVP-D-------G----D-GYYVLP 155 (316)
T ss_dssp CCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEE-E-------T----T-EEEEEE
T ss_pred HhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEe-c-------C----C-ceEeCC
Confidence 4588889999999998865433221111 011256789998887744444443 2 1 1 344665
Q ss_pred Ee-cCCCcch-HHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEE
Q psy7891 260 VG-YDRTLGG-LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLV 337 (929)
Q Consensus 260 ~~-~d~~lGG-~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~i 337 (929)
+. |...+.- .+.+..|.++|.+++.. -.-.++. +-+.+.+|.+........-+.. +-.-.|
T Consensus 156 sEgGH~~fap~~~~e~~l~~~l~~~~~~--vs~E~vl-SG~GL~~ly~~l~~~~~~~~~~--------------~~~~~I 218 (316)
T PF02685_consen 156 SEGGHVDFAPRTDEEAELLRFLRRRYGR--VSVERVL-SGRGLENLYRFLAGERGAEPPL--------------LSAAEI 218 (316)
T ss_dssp E-GGGSB---SSHHHHHHHHHHHHHCTS---BHHHCS-SHHHHHHHHHHHHCCTT--S------------------HHHH
T ss_pred CccccccCCCCCHHHHHHHHHHHHhcCC--ceeEeec-chhhHHHHHHHHHhccCCCCCC--------------CCHHHH
Confidence 54 4444443 46778899999988843 1112222 3456666666543322100000 000123
Q ss_pred eHHHH---HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCc-CCHH-HH-HHHHHHh-CC---------ccCCC
Q psy7891 338 TRAEF---EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT-RVPK-VQ-EKITKVV-GV---------ELSKN 401 (929)
Q Consensus 338 tR~ef---e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~-v~-~~l~~~f-~~---------~i~~~ 401 (929)
++.-+ +.+|...++.....+-++..+.-+...--..|+|.||-+ |++. ++ ..+.+.| .+ -...-
T Consensus 219 ~~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~l 298 (316)
T PF02685_consen 219 SAAALEGGDPLAREALDLFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYL 298 (316)
T ss_dssp HHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEE
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEE
Confidence 33322 235555555555555555444322222334799999985 3332 22 1122223 11 01122
Q ss_pred CCchHHHHhhHHHHHHh
Q psy7891 402 LNTDEAAALGAVYKAAD 418 (929)
Q Consensus 402 ~n~deaVA~GAa~~aa~ 418 (929)
+.-+.+.-+||+.++..
T Consensus 299 i~~~~~gL~Gaa~~a~~ 315 (316)
T PF02685_consen 299 ITDPDAGLLGAAAYARQ 315 (316)
T ss_dssp E--S-HHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHhc
Confidence 23445788899988753
No 128
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=76.77 E-value=65 Score=36.07 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=90.1
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
....+|+++|| ++-+.+ ..+ | . .|++ +|..-|-.-+|..+..+..+.|.+....-..=.-+.
T Consensus 162 ~~~r~vlNiGG----IaNlt~--l~~---~------~-~v~g--~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~ 223 (371)
T COG2377 162 RERRAVLNIGG----IANLTY--LPP---G------G-PVLG--FDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDE 223 (371)
T ss_pred CCCeEEEeccc----eEEEEe--cCC---C------C-ceee--eecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCH
Confidence 57899999998 222222 221 2 2 4555 555688888999999888877765221110001112
Q ss_pred HHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHH---HHH-HHHhHHHHHH-HHHHHHcCCCCCCcc
Q psy7891 298 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA---LNE-DLFDRVGYPV-EQALKSSAVPMDVIS 372 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~---l~~-~l~~~i~~~i-~~~L~~a~~~~~~I~ 372 (929)
....+|+ ...-++... +.+.+-.+|...--...++. +-. +...-+..+- ..+++....-...-+
T Consensus 224 ~ll~~ll-----~~p~F~~~~------PkStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~eltA~tIv~s~~~~~~~p~ 292 (371)
T COG2377 224 ALLARLL-----AHPYFALPA------PKSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELTAATIVKSVATLQGDPR 292 (371)
T ss_pred HHHHHHh-----hCCcccCCC------cccCCccccchhhHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 2223333 222232221 11222233333222222222 111 1111111111 111222233345677
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhC-CccC----CCCCchHHHHhhHHHHHHhhc
Q psy7891 373 QVILVGAGTRVPKVQEKITKVVG-VELS----KNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 373 ~ViLvGG~sriP~v~~~l~~~f~-~~i~----~~~n~deaVA~GAa~~aa~~s 420 (929)
.++++||+.+-|.+.+.|...+. ..+. ..+++|.-=|.+-|+.|....
T Consensus 293 ~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 293 RLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred eeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 89999999999999999999995 3433 246777777777788777554
No 129
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=75.33 E-value=9.2 Score=43.23 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=43.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC-cc------CCCCCchHHHHhhHHHHH
Q psy7891 344 ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV-EL------SKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 344 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~-~i------~~~~n~deaVA~GAa~~a 416 (929)
.++.-+..-+...|.+.++.... .++.|+++||+.+-|++-+.|++.++. .+ ..+.+.-||++. |++|
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La 335 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHH
Confidence 34444444455555566665432 378999999999999999999999973 33 344566677666 4555
Q ss_pred Hh
Q psy7891 417 AD 418 (929)
Q Consensus 417 a~ 418 (929)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 130
>CHL00094 dnaK heat shock protein 70
Probab=75.09 E-value=14 Score=45.24 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHH
Q psy7891 762 LKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKI 841 (929)
Q Consensus 762 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~ 841 (929)
...+...+..++..+..+ . ..++++++..+.+.+++++.||.+. ...+++.++
T Consensus 531 kn~le~~i~~~~~~l~~~---~---------~~~~~~~~~~~~~~l~~~~~wl~~~---------------~~~~~~~~~ 583 (621)
T CHL00094 531 KNQAESLCYQAEKQLKEL---K---------DKISEEKKEKIENLIKKLRQALQND---------------NYESIKSLL 583 (621)
T ss_pred HHHhHHHHHHHHHHHHHH---h---------ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHH
Confidence 334555555555555421 0 4688899999999999999999752 117889999
Q ss_pred HHHHHHHHHHHhcc
Q psy7891 842 RALEREVRYLENKS 855 (929)
Q Consensus 842 ~~l~~~~~~i~~k~ 855 (929)
++|+..+++++.|.
T Consensus 584 ~~l~~~~~~~~~kl 597 (621)
T CHL00094 584 EELQKALMEIGKEV 597 (621)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 131
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=74.76 E-value=2.9 Score=37.38 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.0
Q ss_pred CeEEEEEcCccceEEEEEECC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g 45 (929)
|.++|||+|.+++++|++...
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 358999999999999999644
No 132
>PLN02666 5-oxoprolinase
Probab=74.36 E-value=50 Score=43.66 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=48.5
Q ss_pred EeHHHHHHHHHHHH-hHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHH
Q psy7891 337 VTRAEFEALNEDLF-DRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 337 itR~efe~l~~~l~-~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~ 414 (929)
++-++...-+..+. .....+|+......|.++.+. .++..||+ =|..--.|.+.+| ..+..+.++.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444433333332 344555666666667766642 34445555 3777788999999 5587888999999999875
Q ss_pred H
Q psy7891 415 K 415 (929)
Q Consensus 415 ~ 415 (929)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 4
No 133
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=73.45 E-value=19 Score=39.20 Aligned_cols=50 Identities=32% Similarity=0.513 Sum_probs=40.5
Q ss_pred ccEEEEEcC--CcCCH-HHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 371 ISQVILVGA--GTRVP-KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 371 I~~ViLvGG--~sriP-~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
...|+|.|- ++|.| .|++.|++.|..++ +.+.. ++.|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V-~~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKV-LVLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCe-EEecc-hhhhhhHHHHHHHHhCC
Confidence 347999988 99999 99999999998433 23333 88999999999888766
No 134
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.70 E-value=4.2 Score=49.63 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=27.6
Q ss_pred EEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 191 VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 191 ~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
+..+.+-|.|..+.....-... . . +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~---~-g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLK---A-G-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhcccc---c-C-CEEEEEcCCcceeeeeee
Confidence 3345566666555554431111 1 3 599999999999999987
No 135
>KOG0104|consensus
Probab=69.14 E-value=22 Score=43.03 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=44.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy7891 751 RHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSE 818 (929)
Q Consensus 751 R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~ 818 (929)
+-.+...|..+++.|...|-.++..+.. + .|. ..-+++|+..|.+.+.....||.+-.
T Consensus 652 ~e~~k~~re~a~N~LE~~l~e~q~~l~d----~-ey~-----e~at~EEk~~L~~~~~~~~~Wleed~ 709 (902)
T KOG0104|consen 652 KEKEKSEREEASNELEAFLFELQDKLDD----D-EYA-----EVATEEEKKILKKKVSLLMDWLEEDG 709 (902)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcC----c-hHh-----hhcCHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456677888888888888777665544 2 220 45788999999999999999999877
No 136
>PRK00976 hypothetical protein; Provisional
Probab=69.14 E-value=32 Score=38.15 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=39.5
Q ss_pred CccEEEEEcCCcCCH--HHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 370 VISQVILVGAGTRVP--KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 370 ~I~~ViLvGG~sriP--~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
+.+.|+|-||-++.+ .+.+.+++.+... ...-..+|.++|||+.|....+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 467899999999998 7888888888643 23334589999999999876554
No 137
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=68.48 E-value=4.9 Score=42.79 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=17.7
Q ss_pred eEEEEEcCccceEEEEEECC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g 45 (929)
.+||||+|||++++++++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 37999999999999999854
No 138
>KOG2708|consensus
Probab=68.10 E-value=43 Score=34.70 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEeHHHHH-HHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCC--CCchHHHHhhH
Q psy7891 336 LVTRAEFE-ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKN--LNTDEAAALGA 412 (929)
Q Consensus 336 ~itR~efe-~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~--~n~deaVA~GA 412 (929)
..|.+++- ++-+.+|.-+.+.-++++..++. +.|++|||-..--.+|+++..+....-..- -|-..|+-.|+
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~s-----~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~ 298 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCGS-----KEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGV 298 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCch
Confidence 45555543 33345677777777888876643 479999999999999999998876322222 23334566666
Q ss_pred HHH
Q psy7891 413 VYK 415 (929)
Q Consensus 413 a~~ 415 (929)
.+.
T Consensus 299 MIA 301 (336)
T KOG2708|consen 299 MIA 301 (336)
T ss_pred HHH
Confidence 543
No 139
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=67.95 E-value=2e+02 Score=31.90 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=34.2
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHh---CCccCC---CCCchHHHHhhHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVV---GVELSK---NLNTDEAAALGAV 413 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~---~~n~deaVA~GAa 413 (929)
.++.|+|.||...-.++++.|.+.+ +-.+.. ..-.|.+++.|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999987 433322 2357888888886
No 140
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=67.39 E-value=5.6 Score=38.27 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=18.9
Q ss_pred CeEEEEEcCccceEEEEEECC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g 45 (929)
|.++|||+|+..+.+|+.++.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 679999999999999999887
No 141
>PLN02939 transferase, transferring glycosyl groups
Probab=66.50 E-value=1.6e+02 Score=37.61 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhch--hhhccCCChhHHHHHHHHHHHHHHhhhhcCCCC-
Q psy7891 653 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNA- 729 (929)
Q Consensus 653 ~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~--~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a- 729 (929)
+++++.++.++.....-|+....++.-+.-|++++-++..++-. ++. ..+.+-+.+.+-++++.+..-|+--...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDV-SKLSPLQYDCWWEKVENLQDLLDRATNQVE 317 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888889999999999999999999999888888742 222 23344444556666666666664211111
Q ss_pred -------CHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHH
Q psy7891 730 -------EADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKS 802 (929)
Q Consensus 730 -------~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 802 (929)
.-.++.+|.+.|+.... +..-++.|...++.+++.+...+..++.... + ....++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~ 380 (977)
T PLN02939 318 KAALVLDQNQDLRDKVDKLEASLK----EANVSKFSSYKVELLQQKLKLLEERLQASDH---E----------IHSYIQL 380 (977)
T ss_pred HHHHHhccchHHHHHHHHHHHHHH----HhhHhhhhHHHHHHHHHHHHHHHHHHHhhHH---H----------HHHHHHH
Confidence 11234444444444322 2334556778888888888777776665321 1 1133455
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----cCCCCCcceeHHHHHHHHHHH
Q psy7891 803 LDTLINETKVWKEKSEKEQNQ----LKKSDPIVLTIRSIVEKIRAL 844 (929)
Q Consensus 803 l~~~~~~~~~Wl~~~~~~q~~----~~~~~dP~~~~~di~~k~~~l 844 (929)
-...+++++.-++....++.+ .|..+.|.-.+.+|.-+++.+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 381 YQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 566677777777777777766 345566666677777776655
No 142
>PRK03011 butyrate kinase; Provisional
Probab=63.61 E-value=12 Score=42.41 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=36.3
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC----CccCCCCCchHHHHhhHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVG----VELSKNLNTDEAAALGAV 413 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~----~~i~~~~n~deaVA~GAa 413 (929)
++|.|+|.||.+..+.+.+.|.+.+. ..+....+..+|.+.||+
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHH
Confidence 68899999999999999998888775 245556677789999986
No 143
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=63.08 E-value=19 Score=29.29 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=30.7
Q ss_pred HHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcE
Q psy7891 152 YASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 191 (929)
Q Consensus 152 ~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (929)
..+++.... ...++.|+.++..+|..+.+.|...||..
T Consensus 7 ~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 7 ALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 344444433 67889999999999999999999999975
No 144
>PRK02224 chromosome segregation protein; Provisional
Probab=61.13 E-value=3.1e+02 Score=35.16 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhh
Q psy7891 650 TLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWL 722 (929)
Q Consensus 650 ~ls~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL 722 (929)
.+++.+...+..++-.+..-+.......+++..++...-.++..+. .+...+...++..+...+.....=+
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~l~~~~~~l 215 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD--QLKAQIEEKEEKDLHERLNGLESEL 215 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999998888766666666666666666666666666552 3333333444444444444444444
No 145
>PLN02362 hexokinase
Probab=60.46 E-value=36 Score=40.35 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHcCC--cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 173 NQIERQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
...-.+.|.+|...-|+ ++..|||+.++..++.++.. +..++-+=+|.||=-+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~--------~~~~iG~IlGTGtNacY~E 261 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD--------PDTVAAVIIGTGTNACYLE 261 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC--------CCceEEEEEECCccceEee
Confidence 44455666666665565 58899999999877654432 2333333366666555443
No 146
>PLN02920 pantothenate kinase 1
Probab=60.16 E-value=52 Score=37.34 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=35.9
Q ss_pred CCccEEEEEcCCcCCH-HHHHHHHHHh---C---CccCCCCCchHHHHhhHHHHHH
Q psy7891 369 DVISQVILVGAGTRVP-KVQEKITKVV---G---VELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 369 ~~I~~ViLvGG~sriP-~v~~~l~~~f---~---~~i~~~~n~deaVA~GAa~~aa 417 (929)
.+++.|+++|+..|.+ ..++.|.-.+ . .+....-+.....|+||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 4788999999999998 7777554433 2 3455566778899999976543
No 147
>PRK14878 UGMP family protein; Provisional
Probab=60.04 E-value=2.8e+02 Score=30.87 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=29.8
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHh---CCccCCC---CCchHHHHh
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVV---GVELSKN---LNTDEAAAL 410 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~~---~n~deaVA~ 410 (929)
.+..|+|.||...-.++++.|.+.+ |.++..+ .-.|.++..
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3668999999999999999999977 4333222 245666666
No 148
>PLN02405 hexokinase
Probab=58.76 E-value=47 Score=39.28 Aligned_cols=58 Identities=22% Similarity=0.164 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCC--cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEE
Q psy7891 173 NQIERQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 238 (929)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~ 238 (929)
...-.+.|.+|...-|+ ++..|||+.++..++.++.. +...+-+=+|-||=-+.+-.+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~--------~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN--------PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC--------CCceEEEEEeCCeeeEEEeec
Confidence 44456666777766666 57889999999877665442 233343446777666655443
No 149
>KOG0994|consensus
Probab=58.25 E-value=3.8e+02 Score=34.59 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHH
Q psy7891 666 LNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKI 715 (929)
Q Consensus 666 ~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l 715 (929)
+.....-+.+.+++..+|+.+|-++|++|.+ +..+++..+++.+.+
T Consensus 1456 ~~~a~as~~q~~~s~~el~~Li~~v~~Flt~----~~adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1456 LEQANASRSQMEESNRELRNLIQQVRDFLTQ----PDADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHH
Confidence 3334444555666777788888888998864 345666666665554
No 150
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=57.99 E-value=27 Score=36.17 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCceEEEEEEEEE
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~ 239 (929)
.+.+|++|+||.++-+++|++.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~ 83 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELS 83 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEE
T ss_pred CceEEEEeecCcEEEEEEEEEc
Confidence 6789999999999999999987
No 151
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=57.16 E-value=1.2e+02 Score=33.41 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=28.0
Q ss_pred cCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceE
Q psy7891 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWST 231 (929)
Q Consensus 187 AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~ 231 (929)
.|+++ .+-|+..|+|++..+..... . ..+++++-+|-|==
T Consensus 106 ~~~Pv-~veNDan~aalaE~~~g~~~---~-~~~~~~i~~gtGIG 145 (314)
T COG1940 106 LGLPV-FVENDANAAALAEAWFGAGR---G-IDDVVYITLGTGIG 145 (314)
T ss_pred HCCCE-EEecHHHHHHHHHHHhCCCC---C-CCCEEEEEEcccee
Confidence 46665 89999999999877654421 2 46778887777643
No 152
>KOG1386|consensus
Probab=56.83 E-value=77 Score=36.82 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=80.7
Q ss_pred EEEEcCccceEEEEEE----CCCc-eEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCC
Q psy7891 28 MSVDLGSEWMKVAIVS----PGVP-MEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 102 (929)
Q Consensus 28 vGID~GTt~s~va~~~----~g~~-~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d 102 (929)
|-||=|++.|++-|+. .|.+ ..++...... ... ....+....+|+....+++.||-
T Consensus 12 iviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~-------------~k~-~PGiSsfa~nP~~a~~~l~pLle----- 72 (501)
T KOG1386|consen 12 IVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDC-------------LKL-GPGISSFADNPEGASVYLTPLLE----- 72 (501)
T ss_pred EEEecCCCCceEEEEeecccCCCcccCccchhhcc-------------ccc-CCChhhhccChhhhHHHHHHHHH-----
Confidence 5799999999998873 3432 1121111111 111 12234445678877778887763
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHH
Q psy7891 103 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 182 (929)
Q Consensus 103 ~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~ 182 (929)
.-+.+.|-......+ +.+...-|..+-+++.-..+|..+........+-.+.+.
T Consensus 73 ----fA~~~IPk~~h~~Tp----l~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~------------------ 126 (501)
T KOG1386|consen 73 ----FAKEHIPKEKHKETP----LFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDE------------------ 126 (501)
T ss_pred ----HHHhhCCHhhcCCCC----eEEEecccceecCcccHHHHHHHHHHhcccccCCccccc------------------
Confidence 223344432211111 333333344455555556667666665543333222222
Q ss_pred HHHHcCCcEEEEechhH--HHHHHhcccccccCC--CCCCcEEEEEEcCCceEEEEEEE
Q psy7891 183 AGELAGLKVLQLMNDYT--AVALNYGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 183 Aa~~AGl~~~~li~Ept--AAAl~y~~~~~~~~~--~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
+..++.-=.|+. =.+++|.+.+-...+ .....++-++||||.+++|+.+-
T Consensus 127 -----~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~ 180 (501)
T KOG1386|consen 127 -----WARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEP 180 (501)
T ss_pred -----ccEEeecccceehhhHHHHHHHHhccccCcccCCcceeeeEecCCceeEEEEec
Confidence 122222223332 235566554322211 10157899999999999999875
No 153
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=56.66 E-value=29 Score=28.25 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEE
Q psy7891 149 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVL 192 (929)
Q Consensus 149 lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~ 192 (929)
+.+....+.... ....++.|+.++..+|..+.+.|...||...
T Consensus 4 ~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 4 YRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 344455554432 4677899999999999999999999999753
No 154
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=55.33 E-value=4.4e+02 Score=31.60 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=38.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHh---CCccCCC---CCchHHHHhhHHHHHHhhc
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVV---GVELSKN---LNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~~---~n~deaVA~GAa~~aa~~s 420 (929)
.+..|+|.||-..-.++++.|.+.+ |-++..+ .-.|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3568999999999999999999665 3333333 3678999999987665443
No 155
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=55.15 E-value=1e+02 Score=32.98 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=47.9
Q ss_pred ccccceEEE--EecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEE
Q psy7891 158 GQVINEAVI--IVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 235 (929)
Q Consensus 158 ~~~v~~~VI--tVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsv 235 (929)
+..+..++. .+|.+|+.- +++++++.-.|.+. -+++-..||.+.......- .. ...++++|+|-|+|-+.+
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v---~~-~~~~~~vniGN~HTlaa~ 183 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV---SS-REGIIVVNIGNGHTLAAL 183 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh---hc-cCCeEEEEeCCccEEEEE
Confidence 456667777 889997743 45666666666665 4555555555444333221 12 577999999999999988
Q ss_pred EE
Q psy7891 236 VS 237 (929)
Q Consensus 236 v~ 237 (929)
+.
T Consensus 184 v~ 185 (254)
T PF08735_consen 184 VK 185 (254)
T ss_pred Ee
Confidence 85
No 156
>KOG0101|consensus
Probab=54.85 E-value=27 Score=41.90 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhccc
Q psy7891 794 LFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 856 (929)
Q Consensus 794 ~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k 856 (929)
.+.++++.++.+.|+++..||+..... . ..+++.|.++|+..|++++.++.
T Consensus 563 ~i~~~~~~~~~~~~~~~i~wl~~~~~~----------~--~~e~e~k~~el~~~~~p~~~~~~ 613 (620)
T KOG0101|consen 563 KINEEDKQKILDKCNEVINWLDKNQLA----------E--KEEFEHKQKELELVCNPIISKLY 613 (620)
T ss_pred ccChhhhhhHHHHHHHHHHHhhhcccc----------c--ccHHHHHHHHHHhhccHHHHhhh
Confidence 678899999999999999999763321 1 57899999999999999999874
No 157
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=54.71 E-value=51 Score=33.87 Aligned_cols=11 Identities=9% Similarity=-0.070 Sum_probs=7.5
Q ss_pred HHHHHHhhhch
Q psy7891 686 LLFDAKSKLEL 696 (929)
Q Consensus 686 ~iy~~r~~L~~ 696 (929)
++|.+++.|.+
T Consensus 14 ~l~~v~~~iK~ 24 (205)
T PF12238_consen 14 ALKKVLDLIKE 24 (205)
T ss_pred HHHHHHHHHcc
Confidence 35788888853
No 158
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=54.15 E-value=48 Score=40.38 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhccc
Q psy7891 793 NLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 856 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k 856 (929)
..+++++. .+.+++...||++....-. ..+++.|+.+|+..++++..+.+
T Consensus 552 ~~~~~~~~---~~~l~~~~~wl~~~~~~~~-----------~~e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 552 DFVSEEEK---KKKLKETSDWLEDNGEDAD-----------KEEYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp GGSTHHHH---HHHHHHHHHHHHHHTTTSH-----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHH---HHHHHHHHHHHHhhccCCC-----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666665 7899999999998653211 78999999999999999987763
No 159
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.54 E-value=74 Score=33.83 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=54.3
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCC
Q psy7891 168 VPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 247 (929)
Q Consensus 168 VPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G 247 (929)
+|.+|+. -|.+...|. .+|-. .-+++.--||+....+... ....||+|+|-|++.++++.= +
T Consensus 186 iPe~FtR-Mraaa~sal-~~~t~-av~mDskfaav~gal~dpa-------a~palvVd~GngHttaalvde--------d 247 (342)
T COG4012 186 IPESFTR-MRAAAMSAL-SAGTD-AVAMDSKFAAVMGALVDPA-------ADPALVVDYGNGHTTAALVDE--------D 247 (342)
T ss_pred CchhHHH-HHHHHHHHH-hcCce-EEEEcchhHhhhhcccCcc-------cCceEEEEccCCceEEEEecC--------C
Confidence 5666653 233332222 23333 4566777777666655432 357899999999999999861 1
Q ss_pred cccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhh
Q psy7891 248 FVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNE 285 (929)
Q Consensus 248 ~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~ 285 (929)
++.-+-......+.-..|..-|.++...++..
T Consensus 248 ------RI~gv~EHHT~~Lspekled~I~rf~~GeL~n 279 (342)
T COG4012 248 ------RIVGVYEHHTIRLSPEKLEDQIIRFVEGELEN 279 (342)
T ss_pred ------eEEEEeecccccCCHHHHHHHHHHHHhccccc
Confidence 33333333345566666666666665555443
No 160
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=53.54 E-value=9 Score=42.39 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=17.2
Q ss_pred cEEEEEEcCCceEEEEEEE
Q psy7891 219 VHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~ 237 (929)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999986
No 161
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=53.46 E-value=15 Score=35.47 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.5
Q ss_pred CCeEEEEEcCccceEEEEEECC
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g 45 (929)
.|.++|||+|+..+.+|+.++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4679999999999999998765
No 162
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=53.27 E-value=95 Score=37.85 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc---eeHHHHHHHHHH-HHHHHHHHHhcc
Q psy7891 793 NLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIV---LTIRSIVEKIRA-LEREVRYLENKS 855 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~---~~~~di~~k~~~-l~~~~~~i~~k~ 855 (929)
.+++.++++.+...+++.+.||+.. |+. =...+++..++. |++.|+++++|+
T Consensus 530 ~~l~~~~~~~i~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 585 (595)
T PRK01433 530 TLLSESEISIINSLLDNIKEAVHAR-----------DIILINNSIKEFKSKIKKSMDTKLNIIINDL 585 (595)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5688899999999999999999632 111 022444555555 666677777666
No 163
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=51.90 E-value=3.4e+02 Score=29.97 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh
Q psy7891 352 RVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV 394 (929)
Q Consensus 352 ~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f 394 (929)
-+.+.++++++.. .++.|+|.||...-.++++.|.+.+
T Consensus 245 ~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3444445555443 4678999999999999999998887
No 164
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=50.45 E-value=1.2e+02 Score=33.93 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=38.1
Q ss_pred eHHHHHHHHHH----HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy7891 338 TRAEFEALNED----LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 338 tR~efe~l~~~----l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~ 395 (929)
..++.+.+|.. .++-+.+..+++|+..+ ++.++++||-+.--.+|++++++..
T Consensus 230 ~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 230 NEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHH
Confidence 34444555543 45556666677777654 4579999999999999999999774
No 165
>PRK13410 molecular chaperone DnaK; Provisional
Probab=49.41 E-value=1e+02 Score=38.24 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...+..++..+... ...+ ...++++++..+...+++++.||.+. ...+++.+
T Consensus 530 ~kn~~e~~i~~~~~~l~~~---~~~~-----~~~~~~~~~~~~~~~l~~~~~wL~~~---------------~~~~~~~~ 586 (668)
T PRK13410 530 KRNRALTLIAQAERRLRDA---ALEF-----GPYFAERQRRAVESAMRDVQDSLEQD---------------DDRELDLA 586 (668)
T ss_pred HHHHHHHHHHHHHHHHHhh---hhhh-----hccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 4445555565555555431 1111 15789999999999999999999753 12467777
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
..++...++.+..++
T Consensus 587 ~~~~~~~l~~~~~~~ 601 (668)
T PRK13410 587 VADLQEALYGLNREV 601 (668)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776544
No 166
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=49.29 E-value=96 Score=38.00 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcc
Q psy7891 793 NLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 855 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~ 855 (929)
..++.+++..+...+++++.||+.. ...+++.+.++|+..+..++.+.
T Consensus 552 ~~~~~~~~~~~~~~l~~~~~~l~~~---------------d~~~~~~~~~~l~~~~~~~~~~~ 599 (616)
T PRK05183 552 DLLSAAERAAIDAAMAALREVAQGD---------------DADAIEAAIKALDKATQEFAARR 599 (616)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999641 23689999999999999998643
No 167
>PLN02914 hexokinase
Probab=48.82 E-value=1.2e+02 Score=35.77 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHcCC--cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEE
Q psy7891 171 YFNQIERQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 171 ~f~~~qR~al~~Aa~~AGl--~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 239 (929)
--...-.+.|.+|.+.-|+ ++..|||+.+|..++.++.. +...+-+=+|.||=-+.+-.+.
T Consensus 202 v~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~--------~~~~iGlIlGTGtNacY~E~~~ 264 (490)
T PLN02914 202 TAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD--------DDVMVAVILGTGTNACYVERTD 264 (490)
T ss_pred ccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC--------CCceEEEEEECCeeeEEEeecc
Confidence 3344455666666665555 57889999999877665543 2233333367777666655543
No 168
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=48.68 E-value=25 Score=43.55 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=38.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC---CccCC---CCCchHHHHhhHHHHHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVG---VELSK---NLNTDEAAALGAVYKAA 417 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~---~~i~~---~~n~deaVA~GAa~~aa 417 (929)
.++.|+|+||..+-.++++.|.+.++ .++.. ..-.|.++++|.|+.||
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998875 23322 24679999999998875
No 169
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=48.57 E-value=14 Score=44.16 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.0
Q ss_pred eEEEEEcCccceEEEEEECC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g 45 (929)
.+||||+|||++++++++..
T Consensus 4 ~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 58999999999999999754
No 170
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=47.96 E-value=42 Score=38.07 Aligned_cols=83 Identities=19% Similarity=0.210 Sum_probs=56.7
Q ss_pred EEEeHHHHHHHHHHHHhHH-HHHHHHHHHHcCCCCCCccE-EEEEcCCcCCHHHHHHHHHHhC-Ccc-CCCCCchHHHHh
Q psy7891 335 LLVTRAEFEALNEDLFDRV-GYPVEQALKSSAVPMDVISQ-VILVGAGTRVPKVQEKITKVVG-VEL-SKNLNTDEAAAL 410 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i-~~~i~~~L~~a~~~~~~I~~-ViLvGG~sriP~v~~~l~~~f~-~~i-~~~~n~deaVA~ 410 (929)
..-.+.++-..++..++++ ...++.++++.+ ++. |.|.||..---..-..|.+..+ .++ ..+.-.|+-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3456778877777777664 455666666665 345 9999999888888888888755 333 455667889999
Q ss_pred hHHHHHHhhcCC
Q psy7891 411 GAVYKAADLSTG 422 (929)
Q Consensus 411 GAa~~aa~~s~~ 422 (929)
|||+++......
T Consensus 206 GaA~~~~~~~~~ 217 (360)
T PF02543_consen 206 GAALYAWHELGG 217 (360)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHhcC
Confidence 999999865543
No 171
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=47.12 E-value=2.2e+02 Score=31.09 Aligned_cols=45 Identities=24% Similarity=0.079 Sum_probs=29.4
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
..|+++ .+-|+..|+|++-.+..... . ..+++++.+|.|- -.+++
T Consensus 95 ~~~~pV-~ieNDa~aaalaE~~~g~~~---~-~~~~~~l~~gtGi-G~giv 139 (303)
T PRK13310 95 RLGRDV-RLDNDANCFALSEAWDDEFT---Q-YPLVMGLILGTGV-GGGLV 139 (303)
T ss_pred HHCCCe-EEeccHhHHHHHHhhhcccc---C-CCcEEEEEecCce-EEEEE
Confidence 348874 79999999998754432211 2 5688888888763 34443
No 172
>PLN02377 3-ketoacyl-CoA synthase
Probab=46.63 E-value=49 Score=39.21 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=51.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEE-EcCCcCCHHHHHHHHHHhCCc---cCCCCCchHHHHhhHHH
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL-VGAGTRVPKVQEKITKVVGVE---LSKNLNTDEAAALGAVY 414 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViL-vGG~sriP~v~~~l~~~f~~~---i~~~~n~deaVA~GAa~ 414 (929)
++...++...-+...++++|+++|+++++||.|++ +.|....|.+-.+|.+.+|.+ ...+++..-|.+...++
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL 241 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAV 241 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHH
Confidence 44444555556677888999999999999999877 444446899999999999932 24555544444444343
No 173
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=46.51 E-value=20 Score=34.74 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEECC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g 45 (929)
+.++|||||+-.+.||+....
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 679999999999999998766
No 174
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=46.03 E-value=16 Score=43.88 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=17.0
Q ss_pred EEEEEcCccceEEEEEECC
Q psy7891 27 VMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g 45 (929)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 7899999999999999754
No 175
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.95 E-value=40 Score=31.71 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=19.0
Q ss_pred HHHHhhhhcCCCCCHHHHHHHH
Q psy7891 717 EITNWLEEDGWNAEADVLENKL 738 (929)
Q Consensus 717 e~~~WL~~d~~~a~~~~~~~kl 738 (929)
..++||++|+...|.+.|++++
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm 111 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERM 111 (156)
T ss_pred chhhhhhccCCccCHHHHHHHh
Confidence 3678999999999999999775
No 176
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=45.60 E-value=1.3e+02 Score=32.25 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=34.2
Q ss_pred CccEEEEEcCCcCCHH----HHHHHHHHhC-----Ccc--CCC-CCchHHHHhhHHHHHHhhcCC
Q psy7891 370 VISQVILVGAGTRVPK----VQEKITKVVG-----VEL--SKN-LNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~----v~~~l~~~f~-----~~i--~~~-~n~deaVA~GAa~~aa~~s~~ 422 (929)
..+.|+|.|-.+|+|. |++.|++.|. ..+ ... -... -.|.|||+.|..++++
T Consensus 273 ~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~K-eaA~GaAiiAnaiAGG 336 (374)
T COG2441 273 YPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAK-EAAEGAAIIANAIAGG 336 (374)
T ss_pred CcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhh-hhccchhhhhhhhcch
Confidence 4568999999999875 5677777763 121 111 2233 3578898888877764
No 177
>PRK00404 tatB sec-independent translocase; Provisional
Probab=44.36 E-value=2.2e+02 Score=27.59 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=5.0
Q ss_pred HHHHHHHHHhcc
Q psy7891 844 LEREVRYLENKS 855 (929)
Q Consensus 844 l~~~~~~i~~k~ 855 (929)
++...+.+++..
T Consensus 71 ~~~~~~~~~~~~ 82 (141)
T PRK00404 71 MEQEARKILAPL 82 (141)
T ss_pred hHHHHHHHHhhh
Confidence 333444444433
No 178
>KOG0964|consensus
Probab=44.10 E-value=6.6e+02 Score=32.03 Aligned_cols=179 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH-----HHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCC
Q psy7891 655 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFD-----AKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNA 729 (929)
Q Consensus 655 ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~-----~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a 729 (929)
+++.-++.++.+..-|+.+|. ||-.+|+ ++..|+.=+-......++-+.....++..++-+.+ -.+
T Consensus 202 eLEeEKeeL~~Yqkldk~rr~-------lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~--~~~ 272 (1200)
T KOG0964|consen 202 ELEEEKEELEKYQKLDKERRS-------LEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESED--LKC 272 (1200)
T ss_pred HHHHhHHHHHHHHHHHHhHhh-------hhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHH--HHh
Q ss_pred CHHHHHHHHHHHHhchhhHHHHHH----------------------hhhcchHHHHHHHHHHHHHHHHHHHhhccccCcC
Q psy7891 730 EADVLENKLNEINSLVVPIWERHR----------------------EHQERPEALKSLNNALNVSVTFYNSIKNLSLNTN 787 (929)
Q Consensus 730 ~~~~~~~kl~eL~~~~~pi~~R~~----------------------e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~ 787 (929)
...+++.++..|+.--.-...|.. +.+.|..++..++........--..+..+...|
T Consensus 273 ~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky- 351 (1200)
T KOG0964|consen 273 EIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY- 351 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH-
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHH
Q psy7891 788 ETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVR 849 (929)
Q Consensus 788 ~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 849 (929)
+.+.+++ ..+...+...++-..+.+.+|........--=-=.=|.+.+..|.+.++
T Consensus 352 -----~~l~~ee-~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~ 407 (1200)
T KOG0964|consen 352 -----NSLVDEE-KRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN 407 (1200)
T ss_pred -----HHHHhHH-HHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh
No 179
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=40.87 E-value=1.7e+02 Score=35.74 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcc
Q psy7891 793 NLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 855 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~ 855 (929)
..++++++..+...+++++.||.+. | ..+++.+.++|...+..++.+.
T Consensus 536 ~~~~~~~~~~~~~~l~~~~~~l~~~-----------~----~~~~~~~~~~l~~~~~~~~~~~ 583 (599)
T TIGR01991 536 DLLSEDERAAIDAAMEALQKALQGD-----------D----ADAIKAAIEALEEATDNFAARR 583 (599)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999642 2 2688899999999888887533
No 180
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=40.58 E-value=1.1e+02 Score=30.48 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=52.4
Q ss_pred eHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHH----------------HHHHHHHHHHcCCcEEEEechhHH
Q psy7891 137 HVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE----------------RQSMLKAGELAGLKVLQLMNDYTA 200 (929)
Q Consensus 137 ~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~q----------------R~al~~Aa~~AGl~~~~li~EptA 200 (929)
++++++..+...+.+.....-. . .+.|++|..++... .+.|.+ ..++++ .+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~~-~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~pv-~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYGR-S--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVPV-IIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTC-E--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSEE-EEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccc-c--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceEE-EEecCCCc
Confidence 4567777766666666555421 1 55555555443321 223332 336654 89999999
Q ss_pred HHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 201 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 201 AAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
+|+++.+..... . ..+++++-+|.| .-++++
T Consensus 104 ~a~ae~~~~~~~---~-~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAAK---D-CDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTTT---T-TSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCccC---C-cceEEEEEeecC-CCccee
Confidence 999876643321 2 467888888886 455555
No 181
>PLN02669 xylulokinase
Probab=40.29 E-value=26 Score=42.23 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.4
Q ss_pred cCCeEEEEEcCccceEEEEEECC
Q psy7891 23 YGIAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 23 ~~~~vvGID~GTt~s~va~~~~g 45 (929)
....+||||+||+.+++++++..
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCCeEEEEecccCCeEEEEEcCC
Confidence 34669999999999999999754
No 182
>PRK04123 ribulokinase; Provisional
Probab=39.04 E-value=26 Score=42.20 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=17.3
Q ss_pred eEEEEEcCccceEEEEEEC
Q psy7891 26 AVMSVDLGSEWMKVAIVSP 44 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~ 44 (929)
.++|||+|||++++++++.
T Consensus 4 ~~lgiD~GTts~Ka~l~d~ 22 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDC 22 (548)
T ss_pred EEEEEecCCCceEEEEEEC
Confidence 4899999999999999983
No 183
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=38.78 E-value=74 Score=25.91 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=25.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcE
Q psy7891 164 AVIIVPGYFNQIERQSMLKAGELAGLKV 191 (929)
Q Consensus 164 ~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (929)
..+..|+.++..||..+.+.|+..||.-
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 5789999999999999999999999865
No 184
>PLN02596 hexokinase-like
Probab=37.77 E-value=1.9e+02 Score=34.22 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHcCC--cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEE
Q psy7891 173 NQIERQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 239 (929)
.+.--+.+.+|...-|+ +++.++|+.++..++.++.. +...+-+=+|.||=-+.+-.+.
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~--------~~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN--------KDTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC--------CCeEEEEEEecccceEEEEEcc
Confidence 34445556666665565 58899999999877766543 2333333378887666655543
No 185
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=36.54 E-value=6.3e+02 Score=28.02 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=31.5
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHh---CCccCCC---CCchHHHHhh
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVV---GVELSKN---LNTDEAAALG 411 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~~---~n~deaVA~G 411 (929)
.+..|+|.||...-.++++.|.+.+ |.++..+ .-.|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3568999999999999999999965 3233222 2568888888
No 186
>KOG2150|consensus
Probab=36.37 E-value=8.2e+02 Score=29.26 Aligned_cols=33 Identities=18% Similarity=0.528 Sum_probs=20.1
Q ss_pred cCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHh
Q psy7891 701 SVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINS 743 (929)
Q Consensus 701 ~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~ 743 (929)
+.+.|.|+++ .++.+||.. ..++++..++.++.
T Consensus 111 ~klDPkEkek-----~d~~~wi~~-----~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 111 EKLDPKEKEK-----RDTMDWISN-----QIDELERQVDSFEA 143 (575)
T ss_pred ccCChHHHHH-----HHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 4556666654 467888863 25556666555555
No 187
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=35.82 E-value=41 Score=31.37 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCC--HHHHHHHHHHhCC
Q psy7891 351 DRVGYPVEQALKSSAVPMDVISQVILVGAGTRV--PKVQEKITKVVGV 396 (929)
Q Consensus 351 ~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sri--P~v~~~l~~~f~~ 396 (929)
..+...|+++|+++++.+++|+.|+..|-++.. +.=.+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 345677999999999999999999999988875 3334568888873
No 188
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.23 E-value=1.3e+03 Score=31.45 Aligned_cols=30 Identities=7% Similarity=-0.085 Sum_probs=17.7
Q ss_pred CCCCHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q psy7891 793 NLFSDIELKS----LDTLINETKVWKEKSEKEQN 822 (929)
Q Consensus 793 ~~~t~~e~~~----l~~~~~~~~~Wl~~~~~~q~ 822 (929)
+.++.++++. +...+.+...++.+...+..
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~ 466 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLS 466 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688777654 45555555666665554443
No 189
>PRK13321 pantothenate kinase; Reviewed
Probab=35.23 E-value=33 Score=36.85 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEECC
Q psy7891 27 VMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g 45 (929)
+++||+|+|++++|++..+
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999855
No 190
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=34.64 E-value=8.5e+02 Score=29.76 Aligned_cols=52 Identities=6% Similarity=-0.029 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc--eeHHHHHHHHHHHHHHHHH
Q psy7891 793 NLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIV--LTIRSIVEKIRALEREVRY 850 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~--~~~~di~~k~~~l~~~~~~ 850 (929)
.++|.+|...|.+.+..-=.|.++-+.. ..+|. ..-.+++..++.|++.++.
T Consensus 423 k~LT~~E~~AI~dY~~sgY~~IN~yLrG------~~~s~~~~~~~ei~k~Ik~IDsAf~k 476 (684)
T PHA02566 423 KKLTPAESRAIREYCASGYIDINNFLLG------RYKPEFYMDEEEAEKAIDNLDSAFKN 476 (684)
T ss_pred ccCCHHHHHHHHHHHHhhHHHHHHHHhc------CCCcccccChHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999998841 22333 3345778888888876554
No 191
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=34.61 E-value=80 Score=25.42 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=30.5
Q ss_pred HHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcE
Q psy7891 148 KAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 191 (929)
Q Consensus 148 ~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (929)
.+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3445555554433 44669999 89999999999999998864
No 192
>PRK07058 acetate kinase; Provisional
Probab=34.59 E-value=1.9e+02 Score=33.00 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=34.1
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCc-CCHHHHHHHHHHhC
Q psy7891 346 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT-RVPKVQEKITKVVG 395 (929)
Q Consensus 346 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~f~ 395 (929)
++-+..|+.+.|-...... ..||.|+++||-. ..+.|++.|.+.++
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3445556666665554433 3699999999999 99999999988765
No 193
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.56 E-value=1.9e+02 Score=23.93 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhh
Q psy7891 671 HAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLE 723 (929)
Q Consensus 671 ~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~ 723 (929)
+.+.+...-...++..|-.+..+|.++.|....+++-++.-+.++.++..=+.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~ 56 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELE 56 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677888888999988999999999999888888877765443
No 194
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=34.19 E-value=7.2e+02 Score=28.00 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy7891 350 FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 350 ~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~ 395 (929)
++-+.+.+.++++.. .+..|+++||-+.-.++|+.|++.+.
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 333444445555443 46789999999999999999999874
No 195
>PRK13318 pantothenate kinase; Reviewed
Probab=34.08 E-value=36 Score=36.61 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEECC
Q psy7891 27 VMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g 45 (929)
+++||+|+|+++++++..|
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 6899999999999999855
No 196
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=33.92 E-value=34 Score=33.63 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=16.3
Q ss_pred EEEEEcCccceEEEEEEC
Q psy7891 27 VMSVDLGSEWMKVAIVSP 44 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~ 44 (929)
|+|||.|++++..|++..
T Consensus 2 ILGIDPGl~~~G~av~~~ 19 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQ 19 (154)
T ss_pred EEEEccCcCceEEEEEEe
Confidence 899999999999999853
No 197
>PRK03918 chromosome segregation protein; Provisional
Probab=33.72 E-value=1.1e+03 Score=30.05 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7891 801 KSLDTLINETKVWKEKS 817 (929)
Q Consensus 801 ~~l~~~~~~~~~Wl~~~ 817 (929)
......+..+..++.+.
T Consensus 358 ~~~~~~l~~~~~~~~~l 374 (880)
T PRK03918 358 EERHELYEEAKAKKEEL 374 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444555555443
No 198
>KOG4603|consensus
Probab=33.36 E-value=3.5e+02 Score=26.85 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhchhhHHHHHHhh------hcchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHH
Q psy7891 733 VLENKLNEINSLVVPIWERHREH------QERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTL 806 (929)
Q Consensus 733 ~~~~kl~eL~~~~~pi~~R~~e~------~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~ 806 (929)
.|.+|++.|+..|.-+..-+.+. +...+.+..|++-+...+..+.+++... .|+|.+++..+.+.
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~---------~~vtpedk~~v~~~ 160 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT---------NHVTPEDKEQVYRE 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccCCHHHHHHHHHH
Confidence 34455555555554444322221 1222333344444444444444444322 69999999999888
Q ss_pred HHHHHHHHH
Q psy7891 807 INETKVWKE 815 (929)
Q Consensus 807 ~~~~~~Wl~ 815 (929)
....-.-|.
T Consensus 161 y~~~~~~wr 169 (201)
T KOG4603|consen 161 YQKYCKEWR 169 (201)
T ss_pred HHHHHHHHH
Confidence 887765553
No 199
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.06 E-value=1e+02 Score=32.85 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=45.3
Q ss_pred EEEEEEcCCceEEEEEEEEEeec------cccC--------CcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhh
Q psy7891 220 HVMFYDMGAWSTTVSIVSYQVVK------TKER--------GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNE 285 (929)
Q Consensus 220 ~vlv~D~GggT~dvsvv~~~~~~------~~~~--------G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~ 285 (929)
++|++|+|.||.|+-.+.-.+.. |... +..+..+. +...| ...||--.++++..||..-
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~---l~l~G-~~MGGGp~travrrhlk~G--- 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPY---LALIG-VPMGGGPTTRAVRRHLKKG--- 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCc---EEEEe-eecCCChhhHHHHHHHhcC---
Confidence 57999999999998776521100 0000 00000011 12222 4689999999999998542
Q ss_pred hcccCCCccCCHHHHHHHHHHHHHhhh
Q psy7891 286 MKKTTKDVFENPRAVAKLFKEAGRLKN 312 (929)
Q Consensus 286 ~~~~~~d~~~~~~~~~kL~~~aek~K~ 312 (929)
..+.-..++...+....|+++.
T Consensus 75 -----~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 -----TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred -----CeeEechhhhhhhhcCHHHHHh
Confidence 2334445555666666666654
No 200
>PLN02854 3-ketoacyl-CoA synthase
Probab=32.69 E-value=1.1e+02 Score=36.42 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHHHcCCCCCCccEEEE-EcCCcCCHHHHHHHHHHhCC
Q psy7891 350 FDRVGYPVEQALKSSAVPMDVISQVIL-VGAGTRVPKVQEKITKVVGV 396 (929)
Q Consensus 350 ~~~i~~~i~~~L~~a~~~~~~I~~ViL-vGG~sriP~v~~~l~~~f~~ 396 (929)
-.-+...++++|+++|+++++|+.|++ +.|....|.+-.+|.+.+|.
T Consensus 189 ~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGl 236 (521)
T PLN02854 189 EAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKL 236 (521)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCC
Confidence 334556778889999999999999987 34444589999999999993
No 201
>PRK13331 pantothenate kinase; Reviewed
Probab=32.33 E-value=46 Score=35.62 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=21.0
Q ss_pred ccCCeEEEEEcCccceEEEEEECC
Q psy7891 22 SYGIAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 22 ~~~~~vvGID~GTt~s~va~~~~g 45 (929)
...+-++.||.|+|++++|+++.+
T Consensus 4 ~~~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 4 HTSNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCCCcEEEEEeCCCcEEEEEEECC
Confidence 446889999999999999999855
No 202
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=32.31 E-value=38 Score=38.49 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.1
Q ss_pred eEEEEEcCccceEEEEEECC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g 45 (929)
.++|||+|++.+++.+++.+
T Consensus 3 y~lGIDIGSTsTKaVVmd~~ 22 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDK 22 (432)
T ss_pred eEEEEEcCchhEEEEEEcCC
Confidence 47899999999999999877
No 203
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.19 E-value=7.5e+02 Score=27.54 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy7891 793 NLFSDIELKSLDTLINETK 811 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~ 811 (929)
..||..|+..|.+.++..+
T Consensus 271 r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 271 RGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 5678888888887766554
No 204
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=32.03 E-value=85 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=26.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcEE
Q psy7891 163 EAVIIVPGYFNQIERQSMLKAGELAGLKVL 192 (929)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~~ 192 (929)
.-.++.|+.++..+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 566788999999999999999999999753
No 205
>KOG0517|consensus
Probab=31.70 E-value=9.1e+02 Score=33.27 Aligned_cols=55 Identities=15% Similarity=0.354 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHH
Q psy7891 798 IELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLE 852 (929)
Q Consensus 798 ~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 852 (929)
..+..+.-.|.++..|+.++...+..++.-..-+-.+-.+..++..+++...+|-
T Consensus 950 ~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie 1004 (2473)
T KOG0517|consen 950 LRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIE 1004 (2473)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHH
Confidence 5677888899999999999988888777777777777777777777777666654
No 206
>PLN03170 chalcone synthase; Provisional
Probab=31.65 E-value=2.3e+02 Score=32.73 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=41.0
Q ss_pred HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCc-CCHHHHHHHHHHhCC
Q psy7891 347 EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT-RVPKVQEKITKVVGV 396 (929)
Q Consensus 347 ~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~f~~ 396 (929)
+...+-..+..+++|+++|+++++|+.|+++-.+. .+|.+--.|.+.+|.
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 154 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGL 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCc
Confidence 34455566778999999999999999988776544 699999999999993
No 207
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=31.18 E-value=9.8e+02 Score=28.61 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=55.3
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHH-HHHHHHhCCccC-CCCCchHHHHhhHH
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQ-EKITKVVGVELS-KNLNTDEAAALGAV 413 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~-~~l~~~f~~~i~-~~~n~deaVA~GAa 413 (929)
+..-.+|...++..++++.--+..-+.+... ...+.+.||...--... ++|.+.+...+. .+--.|.-.|.|||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHH
Confidence 3344556666777777776666555554321 56799999998766655 677776664443 44556778999999
Q ss_pred HHHHhhcC
Q psy7891 414 YKAADLST 421 (929)
Q Consensus 414 ~~aa~~s~ 421 (929)
+++.....
T Consensus 331 l~~~~~~~ 338 (555)
T COG2192 331 LAVKRELG 338 (555)
T ss_pred HHHHHHhc
Confidence 99876543
No 208
>KOG0103|consensus
Probab=30.88 E-value=1.2e+02 Score=36.63 Aligned_cols=67 Identities=22% Similarity=0.421 Sum_probs=49.4
Q ss_pred HHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCC-------CC---CHHHHHHHHHHHHhc
Q psy7891 675 RKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGW-------NA---EADVLENKLNEINSL 744 (929)
Q Consensus 675 ~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~-------~a---~~~~~~~kl~eL~~~ 744 (929)
+|-.+..+|+..|-.+|..+. ++.++....+++.+.|+..... .+ ..+++..+.++|.+.
T Consensus 649 ~r~k~~d~~~~~i~~~r~~~~----------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~ 718 (727)
T KOG0103|consen 649 ERPKAFDELGKKIQEIRKAIE----------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNT 718 (727)
T ss_pred hhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccc
Confidence 345566677777777777663 2778888899999999985311 12 338899999999999
Q ss_pred hhhHHHH
Q psy7891 745 VVPIWER 751 (929)
Q Consensus 745 ~~pi~~R 751 (929)
+.||..+
T Consensus 719 ~~~i~~~ 725 (727)
T KOG0103|consen 719 CSDIISK 725 (727)
T ss_pred ccccccc
Confidence 9998764
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.62 E-value=8.1e+02 Score=27.17 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy7891 793 NLFSDIELKSLDTLINETKV 812 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~ 812 (929)
.+||..|+..|...++..+.
T Consensus 266 r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 266 RGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 67888999888887776543
No 210
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.46 E-value=3.8e+02 Score=33.51 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHH
Q psy7891 685 SLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKS 764 (929)
Q Consensus 685 s~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~ 764 (929)
+++.+.-..|. +.|.... ..-|++|...+......... .-....+++++++.|+.....+..|+.+..++-+.+..
T Consensus 539 ~lL~~a~~vlr-eeYi~~~-~~ar~ei~~rv~~Lk~~~e~--Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 539 ELLSQATKVLR-EEYIEKQ-DLAREEIQRRVKLLKQQKEQ--QLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCCCCCccee------
Q psy7891 765 -LNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQN----QLKKSDPIVLT------ 833 (929)
Q Consensus 765 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~----~~~~~~dP~~~------ 833 (929)
+++++.....-.-.......++ .+|++.+...+.....++++...+.+ ++..-.++--.
T Consensus 615 R~~~vl~~l~~~~P~LS~AEr~~----------~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~ 684 (717)
T PF10168_consen 615 RVDRVLQLLNSQLPVLSEAEREF----------KKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSE 684 (717)
T ss_pred HHHHHHHHHhccCCCCCHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCH
Q ss_pred --HHHHHHHHHHHHHHHHHHHhccc
Q psy7891 834 --IRSIVEKIRALEREVRYLENKSK 856 (929)
Q Consensus 834 --~~di~~k~~~l~~~~~~i~~k~k 856 (929)
...|..-+++....++.++++.|
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIK 709 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 211
>PLN03188 kinesin-12 family protein; Provisional
Probab=29.37 E-value=9.8e+02 Score=31.66 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=51.3
Q ss_pred HHHHHHhhhhcC-CCCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHHHHHHHHHHHH----HHHHhhccccCcCCc
Q psy7891 715 IDEITNWLEEDG-WNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVT----FYNSIKNLSLNTNET 789 (929)
Q Consensus 715 l~e~~~WL~~d~-~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~----~~~~~~~~~~~~~~~ 789 (929)
..+-..|++.+. +-.-.+++.--++.=+.+..... .|.+.-....+.|+.++..+.. ++.++..+.++|
T Consensus 1050 ~~er~~w~e~es~wislteelr~eles~r~l~Ekl~---~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~--- 1123 (1320)
T PLN03188 1050 EQERLRWTEAESKWISLAEELRTELDASRALAEKQK---HELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKH--- 1123 (1320)
T ss_pred HHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456677887553 33444555544444444444433 2445555555666666655543 444443333222
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy7891 790 EDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLK 825 (929)
Q Consensus 790 ~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~ 825 (929)
..|...-..++.|.++..++-.+.-
T Consensus 1124 -----------~~ll~~hr~i~egi~dvkkaaakag 1148 (1320)
T PLN03188 1124 -----------IQLLARHRRIQEGIDDVKKAAARAG 1148 (1320)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677778888888776655543
No 212
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.16 E-value=87 Score=36.19 Aligned_cols=7 Identities=14% Similarity=-0.154 Sum_probs=2.8
Q ss_pred HHHHcCC
Q psy7891 360 ALKSSAV 366 (929)
Q Consensus 360 ~L~~a~~ 366 (929)
+.++.|+
T Consensus 94 LyKe~gi 100 (429)
T PRK00247 94 LNKEYGY 100 (429)
T ss_pred HHHHcCC
Confidence 3334443
No 213
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=29.16 E-value=1e+02 Score=31.09 Aligned_cols=58 Identities=12% Similarity=0.242 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCC-CCHHHHHHHHHHHHhchhhHHH
Q psy7891 684 ESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN-AEADVLENKLNEINSLVVPIWE 750 (929)
Q Consensus 684 Es~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~-a~~~~~~~kl~eL~~~~~pi~~ 750 (929)
+.|+-++|..|. .++++||+++ ++.++++++|.+++ .+-++..+.+..-+.+++.+..
T Consensus 4 ~efL~~L~~~L~------~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 4 NEFLNELEKYLK------KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHH------cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 456666666663 3677777665 66778888764432 4556666665555555555443
No 214
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=29.13 E-value=44 Score=33.30 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=17.9
Q ss_pred CeEEEEEcCccceEEEEEEC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSP 44 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~ 44 (929)
|.|||||-|++++.+|++..
T Consensus 2 m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CEEEEEccccCceeEEEEEe
Confidence 67999999999999998864
No 215
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=28.84 E-value=50 Score=34.23 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCc---EEEEechhHHHHHHhcc
Q psy7891 170 GYFNQIERQSMLKAGELAGLK---VLQLMNDYTAVALNYGI 207 (929)
Q Consensus 170 a~f~~~qR~al~~Aa~~AGl~---~~~li~EptAAAl~y~~ 207 (929)
..-...-.+.+.+|....|+. ++.++|+.+|.-++.++
T Consensus 164 ~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 164 GVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp TGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 333344456666777766764 78899999998776553
No 216
>PLN03173 chalcone synthase; Provisional
Probab=28.70 E-value=2.9e+02 Score=31.79 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCc-CCHHHHHHHHHHhCC
Q psy7891 348 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT-RVPKVQEKITKVVGV 396 (929)
Q Consensus 348 ~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~f~~ 396 (929)
.-.+-..+.++++|+++|+++++|+.|+++..+. ..|.+--.|.+.+|.
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl 150 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGL 150 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCC
Confidence 4445566778999999999999999998877554 689999999999993
No 217
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=27.42 E-value=1.6e+02 Score=31.87 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCCCccEEEEEcCCcCCHHHHHHHHHHhC--C--ccCCCCCchHHHHhhHH
Q psy7891 367 PMDVISQVILVGAGTRVPKVQEKITKVVG--V--ELSKNLNTDEAAALGAV 413 (929)
Q Consensus 367 ~~~~I~~ViLvGG~sriP~v~~~l~~~f~--~--~i~~~~n~deaVA~GAa 413 (929)
-...+|.|+|+||..+...+-++|.+... . -+.-.-|-.+|-|.||-
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~l 343 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGAL 343 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhH
Confidence 34679999999999999999999988875 2 23334456678888884
No 218
>PRK13326 pantothenate kinase; Reviewed
Probab=27.41 E-value=60 Score=35.06 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.4
Q ss_pred CCeEEEEEcCccceEEEEEECC
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g 45 (929)
.+.++.||.|+|++++++++.+
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECC
Confidence 3568999999999999999866
No 219
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=27.17 E-value=5.6e+02 Score=31.67 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcc
Q psy7891 794 LFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 855 (929)
Q Consensus 794 ~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~ 855 (929)
.++.+++..+...+...+.||+. +. . ...+++.+.++|+..+..+..+.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~----~~-----~----~~~~~~~~~~~l~~~~~~~~~~~ 623 (657)
T PTZ00186 575 YVSDAEKENVKTLVAELRKAMEN----PN-----V----AKDDLAAATDKLQKAVMECGRTE 623 (657)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc----CC-----c----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999952 11 1 23789999999999999998754
No 220
>PLN02192 3-ketoacyl-CoA synthase
Probab=26.98 E-value=1.7e+02 Score=34.78 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCC
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGV 396 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~~ 396 (929)
+++..++...-+...++++|+++|+++++||.|++.... ...|.+-.+|.+.+|.
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGl 224 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKL 224 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCC
Confidence 344444445556678889999999999999988765332 3589999999999993
No 221
>KOG0678|consensus
Probab=26.86 E-value=5.8e+02 Score=28.37 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=55.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHH--HHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEe
Q psy7891 163 EAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV--ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 240 (929)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAA--Al~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~ 240 (929)
...+|-|.--...-|.-+.+..- --++|..|+- ..+| ||+..+....- .+. .-.=+|+|-|-|-|-+-.+.
T Consensus 108 ~fLlteppln~penreytaeImf-Esfnvpglyi-AVqavLALaaswts~~v-~er-~ltG~VidsGdgvThvipva--- 180 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMF-ESFNVPGLYI-AVQAVLALAASWTSRQV-GER-FLTGIVIDSGDGVTHVIPVA--- 180 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhh-hhccCchHHH-HHHHHHHHHHHHHHhhh-hhh-eeeeEEEecCCCeeEEEEee---
Confidence 46778877766666665543321 1344443321 1122 22222222211 111 23447999999988876654
Q ss_pred eccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHH
Q psy7891 241 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK 281 (929)
Q Consensus 241 ~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~ 281 (929)
.| +-+.++-....+.|++++.-+...+.+
T Consensus 181 -----Eg-------yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 181 -----EG-------YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred -----cc-------eEEeeeeccccccCCchhHHHHHHhhC
Confidence 24 444554566789999999887777654
No 222
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=26.85 E-value=3.1e+02 Score=28.75 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEEcCCcC--CHHHHHHHHHHhCC
Q psy7891 352 RVGYPVEQALKSSAVPMDVISQVILVGAGTR--VPKVQEKITKVVGV 396 (929)
Q Consensus 352 ~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sr--iP~v~~~l~~~f~~ 396 (929)
-....++++|++++++.++|+.|++.....- .|.+...|...+|.
T Consensus 10 l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 10 LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 3456788899999999999999887765433 68888889999984
No 223
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.83 E-value=1.1e+03 Score=27.59 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhch--hh---hc--cCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q psy7891 663 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--EE---YS--SVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLE 735 (929)
Q Consensus 663 l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~--~~---~~--~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~ 735 (929)
-.....-|+..|+...-.|.+++|+-.|+.+... +. +. -...+++.+.|....+++..-|. ..+.+.++|+
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~--kq~Is~e~fe 371 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR--KQGISTEQFE 371 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hcCCCHHHHH
Confidence 3344455777888888889999999999987642 11 11 12346667777777777776665 3456666666
Q ss_pred HHHHHH--------------HhchhhHHHHHHhhhcchHHHH
Q psy7891 736 NKLNEI--------------NSLVVPIWERHREHQERPEALK 763 (929)
Q Consensus 736 ~kl~eL--------------~~~~~pi~~R~~e~~~rp~a~~ 763 (929)
.+-.|= .++..-|..|-.+++++-..++
T Consensus 372 ~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sle 413 (622)
T COG5185 372 LMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLE 413 (622)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHH
Confidence 544332 2344455556556665555444
No 224
>PRK00182 tatB sec-independent translocase; Provisional
Probab=26.78 E-value=2.7e+02 Score=27.52 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=31.2
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHH
Q psy7891 755 HQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVW 813 (929)
Q Consensus 755 ~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~W 813 (929)
-+..|.++..+.+.+..++++++.++...+. -+. .|++.+++.+++...|
T Consensus 23 PerLP~~~r~lg~~ir~~R~~~~~~k~el~~--------Elg-~e~~elrk~l~~l~~~ 72 (160)
T PRK00182 23 PERLPRLIEDVRAALLAARTAINNAKQQLDG--------DFG-EEFDEFRKPLNQIASY 72 (160)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-hHHHHHHHHHHHHHHH
Confidence 3456888888888888888888876532111 111 2456666666665554
No 225
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=26.78 E-value=1.5e+02 Score=32.53 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=29.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCC---------ccCCCCCchHHHHhhHHHHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGV---------ELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~---------~i~~~~n~deaVA~GAa~~a 416 (929)
+.+.|+|-||.+..+.+.+.|++.+.. .+......+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 456778877666656555555555431 22334456778999999775
No 226
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.72 E-value=3.7e+02 Score=26.68 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy7891 759 PEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEK 816 (929)
Q Consensus 759 p~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~ 816 (929)
...++.|..-+.....-+..++. .. ..++++++..+..........|..
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~---~~------~~vs~ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRS---GS------KPVSPEEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---CC------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556555555555443 22 568999999998888877766644
No 227
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=26.44 E-value=1.1e+02 Score=35.09 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=30.9
Q ss_pred ccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHH-HHHHhccc
Q psy7891 160 VINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA-VALNYGIF 208 (929)
Q Consensus 160 ~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptA-AAl~y~~~ 208 (929)
.|.++|++.|+.-+-.---.++-||.++|.+.+.-+--..| |||+||..
T Consensus 136 GV~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTe 185 (412)
T PF00815_consen 136 GVKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTE 185 (412)
T ss_dssp T-SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--S
T ss_pred CCCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCC
Confidence 47899999999876666678999999999998888887777 57899964
No 228
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=26.31 E-value=3e+02 Score=29.50 Aligned_cols=118 Identities=19% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHH
Q psy7891 197 DYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR 276 (929)
Q Consensus 197 EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~ 276 (929)
+-.++|++..... +..++|+|+|..+|=-.|-. .| ..+||
T Consensus 108 DR~~n~vaA~~~~--------~~~~vVVD~GTA~Tid~v~~--------~~----------------~~lGG-------- 147 (251)
T COG1521 108 DRIANAVAAYHKY--------GKAVVVVDFGTATTIDLVDE--------GG----------------RYLGG-------- 147 (251)
T ss_pred HHHHHHHHHHHHc--------CCcEEEEEcCCeEEEEEEcC--------CC----------------cEeee--------
Q ss_pred HHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHH
Q psy7891 277 DFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYP 356 (929)
Q Consensus 277 ~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~ 356 (929)
-+.-....+.+-+. ...+|.-...-.. ....+-++..+.+...++-.....
T Consensus 148 ---------------~I~PGi~l~~~aL~-~~aa~lp~~~~~~-------------~~~~~gk~T~~aiqsG~v~g~~~~ 198 (251)
T COG1521 148 ---------------AILPGITLSFEALF-ARAAKLPRVEIAR-------------PESVPGKNTVEAIQSGVVYGYVGL 198 (251)
T ss_pred ---------------EeccCHHHHHHHHH-HHHhcCCcccccC-------------ccccCCcchHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHcCCCCCCccEEEEEcCCcCC
Q psy7891 357 VEQALKSSAVPMDVISQVILVGAGTRV 383 (929)
Q Consensus 357 i~~~L~~a~~~~~~I~~ViLvGG~sri 383 (929)
|+..+++.......=..|+++||..++
T Consensus 199 i~~~~~~~k~~~~~~~~~vltGg~~~~ 225 (251)
T COG1521 199 IEGLLKEIKEELKGGDAVVLTGGLAKL 225 (251)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCchHh
No 229
>PRK01156 chromosome segregation protein; Provisional
Probab=25.79 E-value=1.5e+03 Score=29.03 Aligned_cols=14 Identities=29% Similarity=-0.009 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy7891 802 SLDTLINETKVWKE 815 (929)
Q Consensus 802 ~l~~~~~~~~~Wl~ 815 (929)
.+...+.....|++
T Consensus 367 ~l~~~l~~~~~~~~ 380 (895)
T PRK01156 367 SYLKSIESLKKKIE 380 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 230
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.72 E-value=6.7e+02 Score=31.12 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCcceeHHHHHHHH
Q psy7891 799 ELKSLDTLINETKVWKEKSEKEQNQLK-KSDPIVLTIRSIVEKI 841 (929)
Q Consensus 799 e~~~l~~~~~~~~~Wl~~~~~~q~~~~-~~~dP~~~~~di~~k~ 841 (929)
=+..|...+++...++-+..+.--+-+ .|.-|.++..+|-.+.
T Consensus 131 vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 131 VLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhc
Confidence 356677777777777777666555555 5656777766666555
No 231
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=25.62 E-value=7.3e+02 Score=25.30 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhh---cCCCCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHHHHH----HHHHHHHHH
Q psy7891 704 APNESKTIVDKIDEITNWLEE---DGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNN----ALNVSVTFY 776 (929)
Q Consensus 704 ~~~er~~l~~~l~e~~~WL~~---d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~----~l~~~~~~~ 776 (929)
+..|.+.+.+.+++..+-+.. ........+..+++.++..++..|+..+ +..|+.+...++ .|-.+.+++
T Consensus 66 s~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v---~~~P~~l~~a~~Fl~~yLp~~~~l~ 142 (199)
T PF10112_consen 66 SDREYEYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYV---EKDPERLTQARKFLYYYLPTAVKLL 142 (199)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH---HHCHHhHHHHHHHHHHHhhHHHHHH
Confidence 444544555555555544431 1122233345678888888888887644 444555544444 444555555
Q ss_pred HHhhcc
Q psy7891 777 NSIKNL 782 (929)
Q Consensus 777 ~~~~~~ 782 (929)
..+..+
T Consensus 143 ~kY~~l 148 (199)
T PF10112_consen 143 EKYAEL 148 (199)
T ss_pred HHHHHH
Confidence 555444
No 232
>KOG2707|consensus
Probab=25.61 E-value=1e+03 Score=26.89 Aligned_cols=112 Identities=15% Similarity=0.056 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhcccc---cceEEEEecCCCCHHHHHHHHHHHHHcCC--cEEEEechhHHHHHHhcccccccCCCCC
Q psy7891 143 AMLLHKAREYASVSAGQV---INEAVIIVPGYFNQIERQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETN 217 (929)
Q Consensus 143 a~~L~~lk~~a~~~~~~~---v~~~VItVPa~f~~~qR~al~~Aa~~AGl--~~~~li~EptAAAl~y~~~~~~~~~~~~ 217 (929)
..-+..+.+.+-...+.. ++-+.+|+=+...-.-+--+.-|-.+|+- +.+--|+-..|=||.--+.....
T Consensus 83 r~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v----- 157 (405)
T KOG2707|consen 83 RENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSV----- 157 (405)
T ss_pred HHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCc-----
Confidence 345555666665554533 44567888777766666666666666633 24445677888887766554211
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQI 273 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~ 273 (929)
.--++.+=+-||++-+.+.+ | -..+++++..-|. -=|+.||.
T Consensus 158 ~FPFl~lLvSGGH~llvla~---------~----~~~~~llg~TvDi-ApGe~lDK 199 (405)
T KOG2707|consen 158 RFPFLALLVSGGHTLLVLAN---------G----VGDHELLGQTVDI-APGEALDK 199 (405)
T ss_pred CCceeeEeeeCCceEEEEec---------c----ccceeeeeccccc-chHHHHHH
Confidence 33456666788888887766 2 2378889887764 44566664
No 233
>KOG0996|consensus
Probab=25.58 E-value=1.6e+03 Score=29.39 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHHhhh
Q psy7891 650 TLNEKQVEKSLSKLDSLN 667 (929)
Q Consensus 650 ~ls~~ei~~~~~~l~~~~ 667 (929)
+.+++.++.+.+.+..+.
T Consensus 774 ~~s~~~v~~le~~l~~~~ 791 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMS 791 (1293)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 456666665555555443
No 234
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=25.46 E-value=4e+02 Score=26.05 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHcCCC-----CCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 350 FDRVGYPVEQALKSSAVP-----MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 350 ~~~i~~~i~~~L~~a~~~-----~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
+..+...+..++...++. +..+...+.-=|...=--|+.+++..++.... ..+.|+|=|++.|+.
T Consensus 80 l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~mv~~~l~~~~~-~~~~d~aDAlaiA~~ 149 (154)
T cd00529 80 LGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHMVKRLLNLSEI-PKPDDAADALAVAIT 149 (154)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHH
Confidence 334556666666666654 44555544322333444688899999984332 223344444444443
No 235
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=25.41 E-value=2.1e+02 Score=31.22 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEE-EEcCCcCCHHHHHHHHHHhC
Q psy7891 352 RVGYPVEQALKSSAVPMDVISQVI-LVGAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 352 ~i~~~i~~~L~~a~~~~~~I~~Vi-LvGG~sriP~v~~~l~~~f~ 395 (929)
-+...|+++|+++++.+.+||.++ -+..++-.|.+-.+|.+.||
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 446678899999999999999864 45667889999999999999
No 236
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=25.41 E-value=96 Score=35.26 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=36.3
Q ss_pred HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy7891 347 EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 347 ~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~ 395 (929)
+.....+...|+++|+.++++++||+.+++.+++.++-- ..+++.||
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg 313 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhcc
Confidence 455666778899999999999999999999999987432 23344455
No 237
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=25.41 E-value=43 Score=31.97 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.7
Q ss_pred EEEEcCccceEEEEEECC
Q psy7891 28 MSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g 45 (929)
+|||||+..+.+|+.++.
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999988664
No 238
>PLN02902 pantothenate kinase
Probab=25.13 E-value=3.4e+02 Score=34.21 Aligned_cols=49 Identities=14% Similarity=0.002 Sum_probs=30.8
Q ss_pred CCccEEEEEcCCcCC-HHHHHHHHH---HhC---CccCCCCCchHHHHhhHHHHHH
Q psy7891 369 DVISQVILVGAGTRV-PKVQEKITK---VVG---VELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 369 ~~I~~ViLvGG~sri-P~v~~~l~~---~f~---~~i~~~~n~deaVA~GAa~~aa 417 (929)
..|+.|+++|+.-|- |...+.|.. ++. .+....-+--..-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCC
Confidence 468899999999774 333444433 333 2344445566788899976654
No 239
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=24.44 E-value=6.3e+02 Score=25.49 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=34.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHH
Q psy7891 646 YGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEI 718 (929)
Q Consensus 646 ~~~~~ls~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~ 718 (929)
..+|+||.|-..++.+.+..+.+. +|..+-..=.++.+.|........+++++...+.+.++.+
T Consensus 96 i~iP~lT~E~R~~lvK~~k~~~E~---------~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkl 159 (179)
T cd00520 96 VNLPPLTEERRKELVKDAKKIAEE---------AKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKL 159 (179)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Confidence 356889999998888887776432 2222222222333333211222345666666666555553
No 240
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.94 E-value=2.4e+02 Score=30.27 Aligned_cols=21 Identities=19% Similarity=0.631 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHH-HHhhhhc
Q psy7891 705 PNESKTIVDKIDEI-TNWLEED 725 (929)
Q Consensus 705 ~~er~~l~~~l~e~-~~WL~~d 725 (929)
+.|.++|+.+|..+ ++|++++
T Consensus 88 etEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666663 6788864
No 241
>KOG0804|consensus
Probab=23.64 E-value=1.2e+03 Score=27.08 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=12.9
Q ss_pred cceEEEEecCCCCHHH
Q psy7891 161 INEAVIIVPGYFNQIE 176 (929)
Q Consensus 161 v~~~VItVPa~f~~~q 176 (929)
..-|+++||+|++...
T Consensus 75 ~mLcilaVP~~mt~~D 90 (493)
T KOG0804|consen 75 TMLCILAVPAYMTSHD 90 (493)
T ss_pred cEEEEEeccccccHHH
Confidence 3458999999999764
No 242
>PLN03168 chalcone synthase; Provisional
Probab=23.47 E-value=3.7e+02 Score=30.87 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=41.2
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCC
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGV 396 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~~ 396 (929)
..+...+-..+..+++|+++|+.+++|+.|+++-.+ -.+|.+--.|.+.+|.
T Consensus 97 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 149 (389)
T PLN03168 97 VVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGL 149 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCc
Confidence 334555556777899999999999999999876443 3589999999999993
No 243
>PRK13320 pantothenate kinase; Reviewed
Probab=23.45 E-value=77 Score=33.82 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.2
Q ss_pred eEEEEEcCccceEEEEEECC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g 45 (929)
.++.||.|+|+++.+++..+
T Consensus 3 M~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred eEEEEEeCCCcEEEEEEECC
Confidence 48999999999999999866
No 244
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.44 E-value=1.4e+03 Score=28.01 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhccc
Q psy7891 800 LKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 856 (929)
Q Consensus 800 ~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k 856 (929)
.....+.++.+..||++...... ..+...|+..+..+++++-
T Consensus 478 ~~~~~~~~~~~~~~l~~~~~~l~---------------~~~~~~le~~~~~~f~~l~ 519 (650)
T TIGR03185 478 LERAITIADKAKKTLKEFREKLL---------------ERKLQQLEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHh
Confidence 34445566667777775544322 2556677777777776663
No 245
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=23.16 E-value=1e+03 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy7891 795 FSDIELKSLDTLINETKVWKEKSEKEQNQLK 825 (929)
Q Consensus 795 ~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~ 825 (929)
+..++...|...+...+.|.+...+-..+..
T Consensus 298 ~~~~~~~~Le~~~~~~~~W~~~~~k~F~k~n 328 (335)
T PF08429_consen 298 VKLEELSDLEKQLKRAEDWMEKAKKLFLKKN 328 (335)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3336678888999999999988776655543
No 246
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=23.08 E-value=82 Score=36.71 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=14.9
Q ss_pred CcEEEEEEcCCceEEEEEE
Q psy7891 218 PVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv 236 (929)
..++-++||||++++++..
T Consensus 163 ~~t~g~lDlGGaStQIaf~ 181 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFE 181 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEE
T ss_pred CceEEEEecCCcceeeeec
Confidence 4789999999999999954
No 247
>PLN03172 chalcone synthase family protein; Provisional
Probab=23.07 E-value=2.8e+02 Score=31.84 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCc-CCHHHHHHHHHHhCC
Q psy7891 347 EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT-RVPKVQEKITKVVGV 396 (929)
Q Consensus 347 ~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~f~~ 396 (929)
+...+-..+.++++|+++|+.+++|+.|+++..+. .+|.+--.|.+.+|.
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl 150 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGL 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCC
Confidence 34455566778999999999999999998776655 699999999999993
No 248
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=22.86 E-value=75 Score=31.08 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.4
Q ss_pred EEEEEcCccceEEEEEEC
Q psy7891 27 VMSVDLGSEWMKVAIVSP 44 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~ 44 (929)
|+|||-|++++..|++..
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 799999999999999854
No 249
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=22.79 E-value=1.7e+03 Score=28.48 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=10.7
Q ss_pred CCCCCHHHHHHHHHHH
Q psy7891 648 VSTLNEKQVEKSLSKL 663 (929)
Q Consensus 648 ~~~ls~~ei~~~~~~l 663 (929)
+..++.+++.....++
T Consensus 176 F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 176 FRLVPPEVMRGYLERI 191 (824)
T ss_pred eeCCCHHHHHHHHHHH
Confidence 4567888887666554
No 250
>PTZ00107 hexokinase; Provisional
Probab=22.49 E-value=2.9e+02 Score=32.57 Aligned_cols=22 Identities=18% Similarity=0.033 Sum_probs=20.4
Q ss_pred CcEEEEEEcCCceEEEEEEEEE
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~ 239 (929)
...+|.+|+||.++.|.+|++.
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L~ 94 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSLR 94 (464)
T ss_pred cceEEEEecCCceEEEEEEEeC
Confidence 6779999999999999999986
No 251
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=22.33 E-value=1.1e+02 Score=34.51 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=32.7
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC--Ccc--CCCCCchHHHHhhHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVG--VEL--SKNLNTDEAAALGAV 413 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~--~~i--~~~~n~deaVA~GAa 413 (929)
+++.|++.||-+..+.+.+.|.+.+. .++ ...-+--++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57899999999999999999998887 232 222344567788873
No 252
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=22.30 E-value=8.1e+02 Score=24.66 Aligned_cols=102 Identities=14% Similarity=0.261 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHH-----HHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHH
Q psy7891 730 EADVLENKLNEINSLVVPIWERHREHQERPEALK-----SLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLD 804 (929)
Q Consensus 730 ~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~-----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~ 804 (929)
....+-+|+.+|.+..+|- +.+...-|.+++ ....-|......++.+..+. +.+..+.++.+.
T Consensus 55 ~i~~l~k~~~eL~~YLDP~---~~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~---------pvL~se~i~~vp 122 (174)
T PF07426_consen 55 RIKELFKRIEELNKYLDPN---FIEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLE---------PVLDSESIRNVP 122 (174)
T ss_pred HHHHHHHHHHHHHHHcCch---hhhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHhh---------hhcCcHHHhhhH
Confidence 3446677899999999994 345555565542 12223333334444444332 456666677777
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHh
Q psy7891 805 TLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLEN 853 (929)
Q Consensus 805 ~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~ 853 (929)
....+...--.-..++|+. +.++..++..|-..++.++.
T Consensus 123 ~~~~kL~~L~~~~~~Q~e~----------~~~ls~~~~~Ll~~YN~ii~ 161 (174)
T PF07426_consen 123 ELCDKLQKLSQIHLEQQEE----------SEELSEEVQELLQQYNKIIL 161 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 7776666555555555554 35666777777766666654
No 253
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.23 E-value=1.5e+03 Score=27.77 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHH
Q psy7891 808 NETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALE 845 (929)
Q Consensus 808 ~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~ 845 (929)
.....+++........++..-++-+...-+-.++..+.
T Consensus 337 ~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 337 AAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 44556666666666666667777776666666655544
No 254
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=22.16 E-value=5.1e+02 Score=22.24 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHH
Q psy7891 711 IVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWER 751 (929)
Q Consensus 711 l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R 751 (929)
|..-|.+++.+|.......+.+.+...+..++.+...|..+
T Consensus 13 l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~ 53 (105)
T PF00435_consen 13 LLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESR 53 (105)
T ss_dssp HHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHH
Confidence 33334444444421222455667777777766666665543
No 255
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=22.15 E-value=90 Score=35.77 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCceEEEEEEEEE
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~ 239 (929)
.+.+|++|+||..+-+++|.+.
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l~ 95 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVLG 95 (466)
T ss_pred CCCEEEEecCCceEEEEEEEeC
Confidence 6889999999999999999986
No 256
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=21.57 E-value=3.7e+02 Score=29.58 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHHHHcCCC----CCCccEEEEEcCCcC------------------------CHHHHHHHHHHhCC-ccCC
Q psy7891 350 FDRVGYPVEQALKSSAVP----MDVISQVILVGAGTR------------------------VPKVQEKITKVVGV-ELSK 400 (929)
Q Consensus 350 ~~~i~~~i~~~L~~a~~~----~~~I~~ViLvGG~sr------------------------iP~v~~~l~~~f~~-~i~~ 400 (929)
.+-.....+++|++++++ ..+|+.|++ |.++. .|.+-..|...+|. -...
T Consensus 12 ~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~ 90 (332)
T cd00825 12 SILGFEAAERAIADAGLSREYQKNPIVGVVV-GTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIHGPAY 90 (332)
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCEEEEE-EeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCCCCCcc
Confidence 344567788999999998 889999875 33322 45556778888883 3445
Q ss_pred CCCchHHHHhhHHHHHHhh
Q psy7891 401 NLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 401 ~~n~deaVA~GAa~~aa~~ 419 (929)
.++...+....|..+|..+
T Consensus 91 ~v~~~cas~~~al~~A~~~ 109 (332)
T cd00825 91 DVSAACAGSLHALSLAADA 109 (332)
T ss_pred ccccHhHHHHHHHHHHHHH
Confidence 5554444444444444433
No 257
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=21.44 E-value=4e+02 Score=24.83 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHH---HHHhHHHHHHHHHHHHcCCCCCCccEE
Q psy7891 298 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNE---DLFDRVGYPVEQALKSSAVPMDVISQV 374 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~I~~V 374 (929)
....+|.++|+.-...++.... .+++ .|.+.++.++|+.+.. .+.+.+...+.+.....|+....--.|
T Consensus 28 EIa~~L~remd~~a~~~~~~r~---~aPN-----~y~V~Ls~~D~~~l~~~~~~l~~el~~~l~~~a~~qgy~~~G~v~V 99 (116)
T PF12401_consen 28 EIAKALRREMDDQARVVSRGRT---LAPN-----VYTVELSPEDYERLSPWGDRLARELADYLAEHAREQGYTFVGPVTV 99 (116)
T ss_dssp HHHHHHHHHHHHT-B---TT-----B--------EEEEEEEHHHHHHH-S-SHHHHHHHHHHHHHHHHHHT-B-SS--EE
T ss_pred HHHHHHHHHHHhCCeecCCCCE---EcCe-----eEEEEECHHHHHHHhhhHHHHHHHHHHHHHHHHHHCCCeecCCEEE
Confidence 4556778888877666666542 2333 4789999999999887 677777788877777777654433334
Q ss_pred EE
Q psy7891 375 IL 376 (929)
Q Consensus 375 iL 376 (929)
.+
T Consensus 100 ~~ 101 (116)
T PF12401_consen 100 EF 101 (116)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 258
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=21.40 E-value=1.6e+02 Score=31.64 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=32.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
.++.|+| |+|..|++.+.+++.||..+ .-+||.+++|+=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4666554 99999999999999998544 56889888887553
No 259
>KOG2517|consensus
Probab=21.39 E-value=73 Score=37.56 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=17.4
Q ss_pred CeEEEEEcCccceEEEEEE
Q psy7891 25 IAVMSVDLGSEWMKVAIVS 43 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~ 43 (929)
..++|||.||+.+++++++
T Consensus 6 ~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFN 24 (516)
T ss_pred ceEEEEEcCCCceEEEEEe
Confidence 5689999999999999997
No 260
>KOG1924|consensus
Probab=21.18 E-value=5.2e+02 Score=32.00 Aligned_cols=116 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcccCC------CCccccCCCCCc
Q psy7891 797 DIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLW------MASLNKKKESTS 870 (929)
Q Consensus 797 ~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k~~------~pk~~~~~~~~~ 870 (929)
++-.++-...-.++++-+-+..+.|..+.+++ .|++.++.+...+-.-.++. .|.+......-.
T Consensus 470 eeseqkA~e~~kk~~ke~ta~qe~qael~k~e----------~Ki~~l~ae~~al~s~~~~~~~~~~iP~PP~~pp~gG~ 539 (1102)
T KOG1924|consen 470 EESEQKAAELEKKFDKELTARQEAQAELQKHE----------EKIKLLEAEKQALSSPSQLLPIDGGIPPPPPLPPTGGT 539 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh----------hhcccCchhhhhccCcccCCCCCCCCCCCCCCCCCCCC
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy7891 871 KKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDK 924 (929)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (929)
..+.+-+-.+=..-.+++-++. |----+|--.|.+|.|.-++...|.||-|.
T Consensus 540 g~pppPppPPlpggag~PPPPp--plPg~aG~PPpPppppg~~gppPPPpp~g~ 591 (1102)
T KOG1924|consen 540 GPPPPPPPPPLPGGAGPPPPPP--PLPGIAGGPPPPPPPPGGGGPPPPPPPGGF 591 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCccCC--CCCcccCCCCccCCCCCCCCCCCcCCCCCC
No 261
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=21.15 E-value=4.5e+02 Score=29.91 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=30.0
Q ss_pred cCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccE
Q psy7891 329 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQ 373 (929)
Q Consensus 329 ~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ 373 (929)
++.++...+.+.++..+ .+...-....+.++|+++|+...+++.
T Consensus 52 ~~~~~~~~~~~~~~~~~-~~~~~l~~~aa~~AL~dAgl~~~~~~~ 95 (406)
T cd00834 52 PDFDPEDYLDRKELRRM-DRFAQFALAAAEEALADAGLDPEELDP 95 (406)
T ss_pred CCCChhhcCCHHHhccC-CHHHHHHHHHHHHHHHHcCCCcccCCc
Confidence 33344455677666543 566666778899999999998776543
No 262
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=21.13 E-value=1.3e+03 Score=26.65 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q psy7891 653 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKL 694 (929)
Q Consensus 653 ~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L 694 (929)
..++..++..+..+. +-...-.+.+.+.+-.+|.++
T Consensus 154 ~~el~~lrrdLavlR------Q~~~~~~~~~~~sm~~i~~k~ 189 (426)
T smart00806 154 RAELKSLQRELAVLR------QTHNSFFTEIKESIKDILEKI 189 (426)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777653 333444555666666666666
No 263
>PRK03918 chromosome segregation protein; Provisional
Probab=20.90 E-value=1.1e+03 Score=30.01 Aligned_cols=14 Identities=0% Similarity=-0.135 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhcc
Q psy7891 842 RALEREVRYLENKS 855 (929)
Q Consensus 842 ~~l~~~~~~i~~k~ 855 (929)
..|++.++.++++.
T Consensus 743 ~~l~~~~~~if~~l 756 (880)
T PRK03918 743 SKVGEIASEIFEEL 756 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555444
No 264
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=20.47 E-value=1.2e+03 Score=25.85 Aligned_cols=176 Identities=20% Similarity=0.201 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhch--------------hhhccCCChhHHHHHHHHH
Q psy7891 650 TLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--------------EEYSSVAAPNESKTIVDKI 715 (929)
Q Consensus 650 ~ls~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~--------------~~~~~~~~~~er~~l~~~l 715 (929)
.++-+++..+.+.+..+.-.=-......+..+.+|+|--+++..|.+ +--.-.+.-.+...|...+
T Consensus 82 ~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l 161 (335)
T PF08429_consen 82 KLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRL 161 (335)
T ss_pred cCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHH
Confidence 35666666666666544433333444445555555555555555521 0001123445677777777
Q ss_pred HHHHHhhhhc----CC--CCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhccccC----
Q psy7891 716 DEITNWLEED----GW--NAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLN---- 785 (929)
Q Consensus 716 ~e~~~WL~~d----~~--~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~---- 785 (929)
... .|+..- +. ..+.+++.+-+++-..+.-|-.. ..+..|+.++..+...-..++..-..
T Consensus 162 ~~~-~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~---------~~~~~L~~~l~~~~~We~ka~~~L~~~~~~ 231 (335)
T PF08429_consen 162 EQL-EWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDE---------KLMAELQELLKQGEEWEEKAKELLSRPRVS 231 (335)
T ss_pred HHH-HHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccch---------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 664 598631 11 14555555555544444332111 12233333333333333322211000
Q ss_pred cCC------cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHH
Q psy7891 786 TNE------TEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIV 838 (929)
Q Consensus 786 ~~~------~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~ 838 (929)
++. ....-.+..+....|.+.+.+...|..+...-... ..++..+..|+.
T Consensus 232 l~~Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~---~~~~~p~~~el~ 287 (335)
T PF08429_consen 232 LEQLEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLEQ---NGSKRPTLDELE 287 (335)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCcHHHHH
Confidence 000 00001345566778888888888888776655222 444455555544
No 265
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=20.10 E-value=51 Score=38.68 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.8
Q ss_pred EEEEcCccceEEEEEECC
Q psy7891 28 MSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g 45 (929)
+|||+|||+++++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYE 18 (454)
T ss_pred CcEeccCCchheEEEEEc
Confidence 589999999999998653
No 266
>KOG0250|consensus
Probab=20.02 E-value=2e+03 Score=28.35 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH--------HHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhh
Q psy7891 653 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESL--------LFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEE 724 (929)
Q Consensus 653 ~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~--------iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~ 724 (929)
.+++..+++++.++...=......++..+.|+.. +|..+..|..-.-.-..-++....+.+.+++...-+.+
T Consensus 234 ~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~ 313 (1074)
T KOG0250|consen 234 EEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE 313 (1074)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHH----HHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHH
Q psy7891 725 DGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKS----LNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIEL 800 (929)
Q Consensus 725 d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 800 (929)
......++++++.++..-++.--.++.+....-.+... ++..+..+.+-+...+ .++
T Consensus 314 --~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k-----------------~~~ 374 (1074)
T KOG0250|consen 314 --ARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK-----------------KEV 374 (1074)
T ss_pred --HhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHH
Q psy7891 801 KSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYL 851 (929)
Q Consensus 801 ~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i 851 (929)
+.+.+.+..+..=+++.+..|.. +++.|++.|..++..+
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~------------e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELE------------ERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHH------------HHHHHHHHHHHHHHHH
Done!