RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7891
(929 letters)
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 530 bits (1367), Expect = 0.0
Identities = 211/392 (53%), Positives = 269/392 (68%), Gaps = 6/392 (1%)
Query: 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 87
+ +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF GER FG DA + RFP
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 88 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLH 147
Y + DLLGK D P V L++SR P +V DE RGT+ FK +D E Y VEELVAM+L+
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILN 120
Query: 148 KAREYASVSAGQ-VINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
A++ A A + + + VI VP YF Q +RQ++L A ELAGL VL L+ND TA ALNY
Sbjct: 121 YAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYA 180
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
+ +R F P +V+FYDMGA STT ++V + V+ KE+ +T PQ+ VLGVG+DRTL
Sbjct: 181 LDRR--FENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKS--KTVPQIEVLGVGWDRTL 236
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326
GG E +RL D L K+F E K DV NPRA+AKL KEA R K VLSAN+E IE
Sbjct: 237 GGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIES 296
Query: 327 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 386
L D+IDFK +TRAEFE L DLF+R P+++AL+S+ + + I V L+G TRVPKV
Sbjct: 297 LYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKV 356
Query: 387 QEKITKVVG-VELSKNLNTDEAAALGAVYKAA 417
QE++++ VG +L K+LN DEAAA+GA Y AA
Sbjct: 357 QEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 349 bits (896), Expect = e-112
Identities = 109/392 (27%), Positives = 188/392 (47%), Gaps = 17/392 (4%)
Query: 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 87
+DLG+ +A+ ++I +N+ S R TP++V F R GE + T N
Sbjct: 1 FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKN 59
Query: 88 SYGYFLDLLGKSIDSPVVQLF-KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
+ ++G P + K + D++ G V + ++ +L AM +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 207 IFKRKD-FNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
IFK E P V F D+G S T SIV+++ Q+ VLG D+
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKK------------GQLKVLGTACDKH 227
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 228 FGGRDFDLAITEHFADEFKTKYKI--DIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 285
Query: 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 385
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 286 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 345
Query: 386 VQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417
+++ I++ G LS LN DEA A GA + A
Sbjct: 346 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICA 377
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 316 bits (813), Expect = 1e-99
Identities = 143/398 (35%), Positives = 211/398 (53%), Gaps = 20/398 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ +D G+ VA+ G +++ N+ S R+TP+LV+F + +R GE A+
Sbjct: 1 SVVGIDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNF 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFK-TNDNE--LYHVEELV 142
N+ F L+G+ D P VQ P+ +V + G + K E ++ E+++
Sbjct: 60 KNTVRNFKRLIGRKFDDPEVQKELKFLPF-KVVELPD-GKVGIKVNYLGEEKVFSPEQVL 117
Query: 143 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 202
AMLL K +E A + + + VI VP YF +R+++L A ++AGL L+LMN+ TA A
Sbjct: 118 AMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATA 177
Query: 203 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
L YGI+K E P +V F D+G ST VSIV++ K ++ VL +
Sbjct: 178 LAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAF----NKG--------KLKVLSTAF 225
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
DR LGG + L + K+F +K DV NP+A +L +LK VLSAN E
Sbjct: 226 DRNLGGRDFDEALFEHFAKEFK--EKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPL 283
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
IE L+++ D + R EFE L L +RV P+E+AL + + + I V +VG TR
Sbjct: 284 NIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTR 343
Query: 383 VPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+P V+E I KV G ELS LN DEA A G + A LS
Sbjct: 344 IPAVKELIAKVFGKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 278 bits (714), Expect = 7e-83
Identities = 193/655 (29%), Positives = 291/655 (44%), Gaps = 79/655 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
V+ +DLG+ VA++ G P E+ N E R TP++VAF ER G+ A+ P
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGP-EVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPK 59
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
N+ L+G+ PVVQ PY +V V E + E++ AM+L
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPY-KVVKLPNGDAGVEVRYLGETFTPEQISAMVL 118
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K +E A G+ + +AVI VP YFN +RQ+ AG +AGL VL+++N+ TA AL YG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
+ K KD V+ +D+G + VSI+ G E VL D L
Sbjct: 179 LDK-KDKERN----VLVFDLGGGTFDVSILEI------GDGVFE------VLATNGDTHL 221
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN-EHFAQIE 325
GG + RL D ++F KK D+ ++PRA+ +L + A + K LS+N E
Sbjct: 222 GGEDFDNRLVDHFVEEFK--KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFI 279
Query: 326 GLIDE-IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 384
+ + D +TRA+FE L DLF+R PVE+ALK + + I +V+LVG TR+P
Sbjct: 280 TAMADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIP 339
Query: 385 KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFER 444
VQE + + G E SK +N DEA A+GA +A LS F VK + D+ + +E
Sbjct: 340 AVQELVKEFFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIET-- 397
Query: 445 ESESGD--TKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPEQIA 499
G TK+I R T P KK F+ V E E
Sbjct: 398 ---LGGVMTKLIPRN-----TTIPTKKSQIFSTAADNQTAVEIQVYQG-EREMAPD---- 444
Query: 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQE 556
K + F++ G+ A +G I+ F +D +GIL++ + K++
Sbjct: 445 ---NKLLGSFELDGIPPA----------PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQ 491
Query: 557 AAESPLSKLGNTLTSLFSRSKTDENEKPINEA--VDEGNKTAEEPSKNVNSTESQQQSAE 614
S L+ DE E+ + +A +K +E + N E S E
Sbjct: 492 KITITASS---GLSD-------DEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLE 541
Query: 615 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI 669
+S+K K K+ E + L + E+ +K + L ++
Sbjct: 542 KSLKEEGDKLPEADKKKVEEAIEWLKEE--------LEGEDKEEIEAKTEELQKV 588
Score = 46.1 bits (110), Expect = 9e-05
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 626 ADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 685
DK K I+AS S L++ ++E+ + + + + + +A N E
Sbjct: 483 KDKGTGKE-QKITITAS------SGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEE 535
Query: 686 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 745
++ + L+ EE + ++ K ++E WL+E+ + + +E K E+ +V
Sbjct: 536 YVYSLEKSLK-EEGDKLPEADKKK-----VEEAIEWLKEELEGEDKEEIEAKTEELQKVV 589
Query: 746 VPIWERHRE 754
PI ER +
Sbjct: 590 QPIGERMYQ 598
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 251 bits (644), Expect = 3e-73
Identities = 170/607 (28%), Positives = 271/607 (44%), Gaps = 85/607 (14%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 88
+DLG+ VA++ G ++ N E +R TP++VAF K GE G+ A+ P N+
Sbjct: 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENT 69
Query: 89 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 148
+G+ + + + D + Y EE+ AM+L K
Sbjct: 70 IFSIKRKIGRGSNGLKISV----------------------EVDGKKYTPEEISAMILTK 107
Query: 149 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 208
+E A G+ + +AVI VP YFN +RQ+ A +AGL VL+L+N+ TA AL YG+
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 209 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 268
K K+ V+ YD+G + VS++ G E VL G D LGG
Sbjct: 168 KGKE------KTVLVYDLGGGTFDVSLLEI------GDGVFE------VLATGGDNHLGG 209
Query: 269 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 328
+ L D+L +F K D+ + A+ +L + A + K LS+ + + +
Sbjct: 210 DDFDNALIDYLVMEFK--GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIG 267
Query: 329 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 388
+ID +TRA+FE L DL +R PVEQALK + + I VILVG TR+P VQE
Sbjct: 268 GDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQE 327
Query: 389 KITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESES 448
+ + G E K++N DEA ALGA +AA LS + D++ + +E
Sbjct: 328 LVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLL--DVIPLSLGIETLGGVR- 384
Query: 449 GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISK 508
T II+R + T P KK F+ + A I E+ K + +
Sbjct: 385 --TPIIER-----NTTIPVKKSQEFSTAA-----DGQTAVAIHVFQGEREMAADNKSLGR 432
Query: 509 FDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNT 568
F++ G+ A + I+ F +D +GIL++ +L K+++ T
Sbjct: 433 FELDGIPPA------PRGVPQ-IEVTFDIDANGILNVTAKDLGTGKEQS---------IT 476
Query: 569 LTSLFSRSKTDENEKPINEAVDEGNKTAE------EPSKNVNSTESQQQSAEESVKNATQ 622
+ + S ++ I V++ A E + N ES S E+++K +
Sbjct: 477 IKASSGLS-----DEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVK 531
Query: 623 TPDADKK 629
+ +K+
Sbjct: 532 VSEEEKE 538
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 236 bits (605), Expect = 4e-70
Identities = 126/380 (33%), Positives = 192/380 (50%), Gaps = 23/380 (6%)
Query: 39 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLG 97
VA V G EI N E R TP++V F GE GE A+ P N+ G F L+G
Sbjct: 12 VAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPENTVGDFKRLIG 71
Query: 98 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSA 157
+ D P+VQ K V + Y EE+ A++L K +E A
Sbjct: 72 RKFDDPLVQSAKKVIGVDRGAPIIP----VPVELGGKKYSPEEVSALILKKLKEDAEAYL 127
Query: 158 GQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN 217
G+ + EAVI VP YFN +R++ +A E+AGL V++L+N+ TA AL YG+ K+ + T
Sbjct: 128 GEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKKDEKGRT- 186
Query: 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRD 277
++ +D+G + VS+V + VL G D LGG + L D
Sbjct: 187 ---ILVFDLGGGTFDVSLVEVE------------GGVFEVLATGGDNHLGGDDFDNALAD 231
Query: 278 FLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLV 337
+L +KF +K D+ +PRA+ +L + A + K LS++ E + GL D ++ +
Sbjct: 232 YLAEKF--KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVEL 289
Query: 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE 397
TR EFE L L +R VE+ L + + + I V+LVG +R+P V+E + ++ G +
Sbjct: 290 TREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKK 349
Query: 398 LSKNLNTDEAAALGAVYKAA 417
++++ DEA ALGA AA
Sbjct: 350 PLRSIDPDEAVALGAAIYAA 369
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 212 bits (541), Expect = 4e-61
Identities = 133/393 (33%), Positives = 207/393 (52%), Gaps = 23/393 (5%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
V+ +DLG+ + V + G +EI N + R TP+ VAF GER G+ A+ T P
Sbjct: 3 VIGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAML 145
N+ L+G+ D VQ PY +V + + I + + EE+ AM+
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPY-KVVNKDGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL V++++N+ TA A+ Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K+ E N ++ +D+G + VS++ T + G E VL D
Sbjct: 181 GLDKKGG--EKN---ILVFDLGGGTFDVSLL------TIDNGVFE------VLATNGDTH 223
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
LGG + R+ + K F KK KD+ ++ RA+ KL +E + K LS+ ++ +IE
Sbjct: 224 LGGEDFDQRVMEHFIKLFK--KKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIE 281
Query: 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 385
L D DF +TRA+FE LN DLF + PV++ L+ + + I +++LVG TR+PK
Sbjct: 282 SLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPK 341
Query: 386 VQEKITKVV-GVELSKNLNTDEAAALGAVYKAA 417
VQ+ + + G E S+ +N DEA A GA +A
Sbjct: 342 VQQLLKEFFNGKEPSRGINPDEAVAYGAAVQAG 374
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 207 bits (527), Expect = 3e-59
Identities = 129/399 (32%), Positives = 205/399 (51%), Gaps = 20/399 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ D+G + +A+ G +E N+ S R TP++++F RT G A+
Sbjct: 1 SVVGFDVGFQSCYIAVARAG-GIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHA 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 143
+N+ F G++ + P VQ K Y D+V + G V + L+ VE++ A
Sbjct: 60 NNTVSNFKRFHGRAFNDPFVQKEKENLSY-DLVPLKNGGVGVKVMYMGEEHLFSVEQITA 118
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
MLL K +E A + + + + VI VP +F ER+S+L A ++ GL L+LMND TAVAL
Sbjct: 119 MLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVAL 178
Query: 204 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
NYGI+K+ + P V+F DMG + VS ++ K K VLG +
Sbjct: 179 NYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLK------------VLGTAF 226
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
D LGG +L + +F K D RA+ +L++E +LK ++S+N+
Sbjct: 227 DPFLGGKNFDEKLVEHFCAEFK--TKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLP 284
Query: 323 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
IE +++ D + R++FE L DL R+ P+ L+ + + ++ +S V +VG T
Sbjct: 285 LNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGAT 344
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
R+P V+E+I K G ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 205 bits (523), Expect = 1e-58
Identities = 132/392 (33%), Positives = 204/392 (52%), Gaps = 20/392 (5%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 89
+DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+N+
Sbjct: 4 IDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTV 62
Query: 90 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 149
L+G+ PVVQ +P+ + + IV + + ++ EE+ +M+L K
Sbjct: 63 FDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKM 122
Query: 150 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 209
+E A G+ + AVI VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG+ K
Sbjct: 123 KEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 182
Query: 210 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 269
+ +V+ +D+G + VS++ T E G E V D LGG
Sbjct: 183 KGG----GERNVLIFDLGGGTFDVSLL------TIEDGIFE------VKATAGDTHLGGE 226
Query: 270 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 329
+ RL + ++F +K KD+ N RA+ +L R K LS++ + +I+ L +
Sbjct: 227 DFDNRLVNHFVQEFK--RKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 284
Query: 330 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 389
IDF +TRA FE L DLF PVE+ L+ + + I ++LVG TR+PKVQ+
Sbjct: 285 GIDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKL 344
Query: 390 ITKVV-GVELSKNLNTDEAAALGAVYKAADLS 420
+ G EL+K++N DEA A GA +AA LS
Sbjct: 345 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 208 bits (530), Expect = 5e-57
Identities = 198/682 (29%), Positives = 325/682 (47%), Gaps = 81/682 (11%)
Query: 22 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 81
+ G A+ +DLG+ + V V +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 TKGPAI-GIDLGTTYSCVG-VWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 82 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEE 140
R P N+ L+G+ D VVQ +P+ +++ I V + + +H EE
Sbjct: 60 ARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEE 119
Query: 141 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 200
+ +M+L K +E A G+ + +AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA
Sbjct: 120 ISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 179
Query: 201 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260
A+ YG+ K K E N V+ +D+G + VS++ T E G E V
Sbjct: 180 AAIAYGLDK-KGDGEKN---VLIFDLGGGTFDVSLL------TIEDGIFE------VKAT 223
Query: 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEH 320
D LGG + RL +F + F K KD+ N RA+ +L + R K LS++ +
Sbjct: 224 AGDTHLGGEDFDNRLVEFCVQDFKR-KNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQA 282
Query: 321 FAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG 380
+I+ L + ID+ + ++RA FE L D F PVE+ LK + + + +V+LVG
Sbjct: 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGS 342
Query: 381 TRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 439
TR+PKVQ I G E K++N DEA A GA +AA L TG + + +D++L +
Sbjct: 343 TRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL-TGEQSSQ--VQDLLLLDVT 399
Query: 440 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
+ E+ G TK+I+R + T P KK F Y + + E E +
Sbjct: 400 PLSLGLETAGGVMTKLIER-----NTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKD 454
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 554
+LG KF + G+ A +G I+ F +D +GIL+ V
Sbjct: 455 NNLLG-----KFHLDGIPPA----------PRGVPQIEVTFDIDANGILN-------VSA 492
Query: 555 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAE 614
++ + +K+ T+T+ R + ++ +NEA E K +E ++ ++ ++
Sbjct: 493 EDKSTGKSNKI--TITNDKGRLSKADIDRMVNEA--EKYKAEDEANRERVEAKNGLENYC 548
Query: 615 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI----- 669
S+KN Q VK +S S+ +T+ EK ++++L L+ NQ+
Sbjct: 549 YSMKNTLQDEK---------VKGKLSDSD----KATI-EKAIDEALEWLEK-NQLAEKEE 593
Query: 670 -EHAKVRKEKALNSLESLLFDA 690
EH + E N + + ++ A
Sbjct: 594 FEHKQKEVESVCNPIMTKMYQA 615
Score = 40.2 bits (94), Expect = 0.006
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 651 LNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKT 710
L++ +++ +++ + + A + +A N LE+ + K+ L+ E+ + ++ T
Sbjct: 512 LSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKAT 571
Query: 711 IVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPI 748
I IDE WLE++ AE + E+K E+ S+ PI
Sbjct: 572 IEKAIDEALEWLEKNQ-LAEKEEFEHKQKEVESVCNPI 608
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 184 bits (468), Expect = 3e-51
Identities = 129/399 (32%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ +DLG + VA+ G +E N+ S R TP ++F R+ G A+
Sbjct: 1 SVVGIDLGFQSCYVAVARAG-GIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNA 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 143
N+ F G++ P VQ K Y D+V G V + + E++ A
Sbjct: 60 KNTVQGFKRFHGRAFSDPFVQAEKPSLAY-DLVQLPTGSTGIKVMYMEEERNFTTEQVTA 118
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
MLL K +E A + + + + V+ VP ++ ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 119 MLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVAL 178
Query: 204 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
YGI+K+ E P +V+F DMG + VS+ ++ K K VL +
Sbjct: 179 AYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLK------------VLATAF 226
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
D TLGG + L ++ ++F KK D+ RA+ +L +E +LK ++SAN
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFG--KKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLP 284
Query: 323 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
IE +++ID + R +F + +DL RV P+ L+ + + + I V +VG T
Sbjct: 285 LNIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGAT 344
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
R+P V+EKI+K G E+S LN DEA A G + A LS
Sbjct: 345 RIPAVKEKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 184 bits (467), Expect = 5e-51
Identities = 125/399 (31%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ +DLG +A+ G +E N+ S R TP ++ R G A+
Sbjct: 1 SVVGIDLGFLNCYIAVARSG-GIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNV 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY-YDIVADEERGTIVFKTNDNELYHVEELVAM 144
N+ F L G+S D P+VQ + R PY + + G V + + +E++ M
Sbjct: 60 RNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGM 119
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
LL K +E + + + + + VI +P +F ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179
Query: 205 YGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
YGI+K +D + P +V+F DMG + VS+ ++ K K VL +
Sbjct: 180 YGIYK-QDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLK------------VLATTF 226
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
D LGG L D+ +F K +V EN RA+ +L++E +LK ++SAN
Sbjct: 227 DPYLGGRNFDEALVDYFCDEFKTKYKI--NVKENSRALLRLYQECEKLKKLMSANASDLP 284
Query: 323 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
IE ++++D + RA+FE L L RV P++ ++ + + + I + +VG T
Sbjct: 285 LNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGAT 344
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
R+P V+E+IT ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKEQITSFFLKDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 180 bits (458), Expect = 9e-50
Identities = 135/402 (33%), Positives = 209/402 (51%), Gaps = 38/402 (9%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 83
++ +DLG+ VA++ G P I N E R TP++VAF K GER G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIP-NAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN- 61
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143
P N+ +G+ D + + PY +V + + +N + Y +E+ A
Sbjct: 62 -PENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKD-YTPQEISA 116
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
M+L K +E A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K+ NE ++ YD+G + VSI+ G E VL D
Sbjct: 177 AYGLDKKG--NEK----ILVYDLGGGTFDVSILEI------GDGVFE------VLATNGD 218
Query: 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQ 323
LGG + R+ D+L ++F K+ D+ ++ A+ +L + A + K LS+ E
Sbjct: 219 THLGGDDFDQRIIDWLVEEF--KKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEIN 276
Query: 324 IEGL-IDE-----IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
+ + D ++ L TRA+FE L EDL +R PV+QALK + + I +VILV
Sbjct: 277 LPFITADATGPKHLEMTL--TRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILV 334
Query: 378 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419
G TR+P VQE + ++ G E +K +N DE A+GA + L
Sbjct: 335 GGSTRIPAVQELVKELFGKEPNKGVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 174 bits (442), Expect = 1e-47
Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 23/393 (5%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
++ +DLG+ VA++ P+ I N E KR TP++V+F K GE A+ P
Sbjct: 4 IIGIDLGTTNSCVAVIDKTTPVIIE-NAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
N++ L+G+ VQ K + PYY IV E R + + + Y ++ + +L
Sbjct: 63 NTFFATKRLIGRQFKDVEVQR-KMKVPYYKIV--EGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K ++ A G+ ++EAVI VP YFN +RQ+ AG LAGLKVL+++N+ TA AL YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
I KRK ++ YD+G + +SI++ E G E V D L
Sbjct: 180 IDKRK-----ENKNIAVYDLGGGTFDISILNI------EDGVFE------VKATNGDTML 222
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326
GG + + ++ K+F K D+ N +A+ ++ + A + K LS++ E ++
Sbjct: 223 GGEDFDNAIVQYIIKEFKR--KYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPY 280
Query: 327 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 386
L ++ +TR EFE L + + R YP +Q LK + + I +VILVG TR+P +
Sbjct: 281 LDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYI 340
Query: 387 QEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419
Q + ++ G + SK++N DEA ALGA + + L
Sbjct: 341 QNVVQEIFGKKPSKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 175 bits (446), Expect = 3e-46
Identities = 189/641 (29%), Positives = 298/641 (46%), Gaps = 121/641 (18%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VA++ G P+ I N E R TP++VAF K GER G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIP-NAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ +G+ D V R PY +V D G + K + E Y +E+ AM+
Sbjct: 61 ENTIYSIKRFMGRRFD--EVTEEAKRVPY-KVVGDG--GDVRVKVDGKE-YTPQEISAMI 114
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL Y
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K K +E ++ +D+G + VSI+ G E VL D
Sbjct: 175 GLDKSKK-DEK----ILVFDLGGGTFDVSILEIG------DGVFE------VLSTAGDTH 217
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+
Sbjct: 218 LGGDDFDQRIIDWLADEFK--KEEGIDLSKDKMALQRLKEAAEKAKIELSSVLS------ 269
Query: 326 GLIDEID-------------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 372
EI+ ++ +TRA+FE L DL +R PV QALK + + I
Sbjct: 270 ---TEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDID 326
Query: 373 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 432
+VILVG TR+P VQE + G E +K++N DE A+GA + V K KD
Sbjct: 327 EVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGG-------VLKGDVKD 379
Query: 433 IVLY---PIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYAS 488
++L P+ + E+ G TK+I+R + T P KK F S A+
Sbjct: 380 VLLLDVTPLSLGI--ETLGGVMTKLIER-----NTTIPTKKSQVF-----------STAA 421
Query: 489 ------EIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDE 539
+I L E+ K + +F+++G+ A +G I+ F +D
Sbjct: 422 DNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPA----------PRGVPQIEVTFDIDA 471
Query: 540 SGILSLVNIELVVEKQEA----AESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKT 595
+GIL + + K+++ A S LS+ +E E+ + EA E N
Sbjct: 472 NGILHVSAKDKGTGKEQSITITASSGLSE--------------EEIERMVKEA--EANAE 515
Query: 596 AEEPSKNV----NSTESQQQSAEESVKNATQTPDADKKPKI 632
++ K N+ +S AE+++K A A++K KI
Sbjct: 516 EDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKI 556
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 166 bits (421), Expect = 6e-45
Identities = 110/371 (29%), Positives = 176/371 (47%), Gaps = 20/371 (5%)
Query: 49 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF 108
++ N R TP +VAF E G A+ R +N+ +LG+S P Q
Sbjct: 23 DVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKE 82
Query: 109 KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIV 168
K+ I D E +F + +E+ ++ K +E A + G + VI V
Sbjct: 83 KTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITV 142
Query: 169 PGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 228
P YF++ ++ ++ +A E AG VL+++++ +A AL YGI + + T +V+ Y +G
Sbjct: 143 PVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIGQD---SPTGKSYVLVYRLGG 199
Query: 229 WSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKK 288
ST V+I+ G VL D LGG L +L NE K+
Sbjct: 200 TSTDVTILRVN------SGMYR------VLATSTDDNLGGESFTETLSQYLA---NEFKR 244
Query: 289 TTK-DVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNE 347
K DV N RA+ KL A K +LS +E L + IDF+ V+RA FE+L
Sbjct: 245 KWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCS 304
Query: 348 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITK-VVGVELSKNLNTDE 406
LF + P+E+ L+ + + I++V+L G +R+PK+Q+ I VE+ +++ DE
Sbjct: 305 SLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDE 364
Query: 407 AAALGAVYKAA 417
A+GA +A
Sbjct: 365 VIAIGAAKQAG 375
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 160 bits (407), Expect = 4e-43
Identities = 125/383 (32%), Positives = 183/383 (47%), Gaps = 37/383 (9%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 89
+DLG+ VA V G ++I ++ + P++V + G + G DA + P N+
Sbjct: 5 IDLGTTNSLVASVLSG-KVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTI 63
Query: 90 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 149
L+GKSI+ K FPY I+ + G I+F T + VE + A +L
Sbjct: 64 SSVKRLMGKSIEDI-----KKSFPYLPILEGKNGGIILFHTQQGTVTPVE-VSAEILKAL 117
Query: 150 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 209
+E A S G I AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA AL YG+ K
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 210 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 269
+K+ YD+G + VSI+ +G E VL G D LGG
Sbjct: 178 KKE------GIYAVYDLGGGTFDVSILKL------HKGVFE------VLATGGDSALGGD 219
Query: 270 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 329
+ L + L +KK + A+L A + K LS E +E +
Sbjct: 220 DFDQLLAELL------LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE----VE--VR 267
Query: 330 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 389
DFK +TR EFE L + L + +QAL+ + + + I VILVG TR+P VQE
Sbjct: 268 GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEA 327
Query: 390 ITKVVGVELSKNLNTDEAAALGA 412
++K G + ++N DE A+GA
Sbjct: 328 VSKFFGQKPLCDINPDEVVAIGA 350
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 159 bits (403), Expect = 2e-42
Identities = 132/402 (32%), Positives = 196/402 (48%), Gaps = 49/402 (12%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRF 84
AV+ +DLG+ VA++ P I N E R TP++VAF K GER G A+
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIE-NAEGARTTPSVVAFTKDGERLVGMPAKRQAVTN 61
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD------EERGTIVFKTNDNELYHV 138
P N+ L+G+ D P VQ PY + A E G + Y
Sbjct: 62 PENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHG---------KKYSP 112
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
++ A +L K +E A G+ + AVI VP YFN +RQ+ AG++AGL VL+++N+
Sbjct: 113 SQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEP 172
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
TA AL YG ++ + + YD+G + +SI+ Q +G E V
Sbjct: 173 TAAALAYG------LDKKDDKVIAVYDLGGGTFDISILEIQ------KGVFE------VK 214
Query: 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 318
D LGG + L L K+F K+ D+ ++ A+ +L + A + K LS++
Sbjct: 215 STNGDTFLGGEDFDNALLRHLVKEFK--KEQGIDLTKDNMALQRLREAAEKAKIELSSS- 271
Query: 319 EHFAQIEGLIDEID--------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 370
Q + + I + +TRA+FE+L DL R P ++ALK + V
Sbjct: 272 ---LQTDINLPYITADASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSD 328
Query: 371 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
I +VILVG TR+PKVQE + ++ G E SK +N DEA A+GA
Sbjct: 329 IGEVILVGGMTRMPKVQETVKEIFGKEPSKGVNPDEAVAIGA 370
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 162 bits (413), Expect = 5e-42
Identities = 115/388 (29%), Positives = 181/388 (46%), Gaps = 34/388 (8%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 88
+DLG+ VA V GVP E+ + E + P++V + K G G++A P N+
Sbjct: 4 IDLGTTNSLVASVRSGVP-EVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNT 62
Query: 89 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 148
L+G+SI+ S PY V D + +T + VE + A +L K
Sbjct: 63 ISSVKRLMGRSIEDIKTF---SILPY-RFV-DGPGEMVRLRTVQGTVTPVE-VSAEILKK 116
Query: 149 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 208
++ A S G + AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA A+ YG+
Sbjct: 117 LKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 176
Query: 209 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 268
K + YD+G + VSI+ +G E VL G D LGG
Sbjct: 177 KASE------GIYAVYDLGGGTFDVSILKL------TKGVFE------VLATGGDSALGG 218
Query: 269 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 328
+ L ++ +K+ NP L + A K L+ +++ +
Sbjct: 219 DDFDHALAKWI------LKQLGISADLNPEDQRLLLQAARAAKEALTDAES--VEVDFTL 270
Query: 329 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 388
D DFK +TR EFEAL + L + +AL+ + + ++ I V+LVG TR+P V+
Sbjct: 271 DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRR 330
Query: 389 KITKVVGVELSKNLNTDEAAALGAVYKA 416
+ ++ G E +++ D+ ALGA +A
Sbjct: 331 AVAELFGQEPLTDIDPDQVVALGAAIQA 358
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 160 bits (407), Expect = 6e-41
Identities = 186/641 (29%), Positives = 297/641 (46%), Gaps = 89/641 (13%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
V+ +DLG+ VA + G P I N E +R TP++VA+ K G+R G+ A+ P
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N++ +G+ + V + +S+ Y +V DE + + + EE+ A +
Sbjct: 100 ENTFFSVKRFIGRKMSE-VDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 156
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K + AS + +AVI VP YFN +R + AG +AGL+VL+++N+ TA +L Y
Sbjct: 157 LRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 216
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G F++K NET ++ +D+G + VS++ G E VL D
Sbjct: 217 G-FEKKS-NET----ILVFDLGGGTFDVSVLEVG------DGVFE------VLSTSGDTH 258
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA---NNEHFA 322
LGG + R+ D+L F K D+ ++ +A+ +L + A + K LS+ +
Sbjct: 259 LGGDDFDKRIVDWLASNFK--KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLP 316
Query: 323 QIEGLID---EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGA 379
I D ID L TRA+FE L DL DR PVE AL+ + + I +VILVG
Sbjct: 317 FITATADGPKHIDTTL--TRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGG 374
Query: 380 GTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 439
TR+P VQE + K+ G + + +N DE ALGA +A L+ DIVL +
Sbjct: 375 STRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE-------VSDIVLLDVT 427
Query: 440 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
+ E+ G TKII R + T P K F+ D +V EI L E+
Sbjct: 428 PLSLGLETLGGVMTKIIPR-----NTTLPTSKSEVFST-AADGQTSV----EINVLQGER 477
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 554
+ K + F + G+ A +G I+ F +D +GILS+ + K
Sbjct: 478 EFVRDNKSLGSFRLDGIPPA----------PRGVPQIEVKFDIDANGILSVSATDKGTGK 527
Query: 555 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQS-- 612
++ T+T + K DE E+ + EA K A+E + ++ +++ Q+
Sbjct: 528 KQDI---------TITGASTLPK-DEVERMVQEA----EKFAKEDKEKRDAVDTKNQADS 573
Query: 613 ----AEESVKNATQTPDADKKPKI----VTVKEPISASETR 645
E+ +K AD K K+ +K+ I++ T+
Sbjct: 574 VVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQ 614
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 160 bits (406), Expect = 9e-41
Identities = 126/404 (31%), Positives = 205/404 (50%), Gaps = 39/404 (9%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VA++ G P+ IA N E R TP++V F K GE G+ A+ P
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAM 144
N++ +G+ D + R PY I +E +G + K + EEL AM
Sbjct: 63 QNTFYNLKRFIGRRYDE--LDPESKRVPY-TIRRNE-QGNVRIKCPRLEREFAPEELSAM 118
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L K + AS G+ + AVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSI--VSYQVVKTKERGFVETHPQVSVLGVGY 262
YG + ++ V+ +D+G + VS+ V V + K + G
Sbjct: 179 YG------LDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK-----------ATSG--- 218
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA------ 316
D LGG + R+ D+L ++F E + D+ + +A+ +L + A + K LS
Sbjct: 219 DTQLGGNDFDKRIVDWLAEQFLEKEGI--DLRRDRQALQRLTEAAEKAKIELSGVSVTDI 276
Query: 317 NNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 376
+ E I+ +L R +FE+L DL DR+ PV++ALK + + + I +V+L
Sbjct: 277 SLPFITATEDGPKHIETRL--DRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVL 334
Query: 377 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
VG TR+P VQ+ + ++ E ++N+N DE A+GA +A L+
Sbjct: 335 VGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILA 378
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 157 bits (400), Expect = 4e-40
Identities = 131/402 (32%), Positives = 196/402 (48%), Gaps = 77/402 (19%)
Query: 39 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ----------------IIG 81
VA++ G P I N E R TP++VAF K GER G+ A+ ++G
Sbjct: 16 VAVMEGGEPKVIE-NAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMG 74
Query: 82 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 141
R VQ PY + AD G + + + Y +E+
Sbjct: 75 RRDE------------------EVQKDIKLVPYKIVKADN--GDAWVEIDGKK-YTPQEI 113
Query: 142 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 201
AM+L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 202 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKE--RGFVETHPQVSVLG 259
AL YG+ K+ D E ++ YD+G + VSI+ E G E VL
Sbjct: 174 ALAYGLDKKGD--EK----ILVYDLGGGTFDVSIL--------EIGDGVFE------VLS 213
Query: 260 VGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE 319
D LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+ +
Sbjct: 214 TNGDTHLGGDDFDQRIIDYLADEFK--KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQ 271
Query: 320 HFAQI---------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 370
+I G ++ KL TRA+FE L EDL +R P +QALK + + +
Sbjct: 272 --TEINLPFITADASGPKH-LEIKL--TRAKFEELTEDLVERTIEPCKQALKDAGLSVSD 326
Query: 371 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
I +VILVG TR+P VQE + + G E +K +N DE A+GA
Sbjct: 327 IDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGA 368
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 149 bits (378), Expect = 5e-39
Identities = 112/407 (27%), Positives = 183/407 (44%), Gaps = 36/407 (8%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTR 83
V+ ++ G+ + +A ++ G IA N++ +R+ P+ +++H + G A Q+I R
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIA-NEDGERQIPSAISYHGEQEYHGNQAKAQLI--R 57
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD-----EERGTIVFKTNDNELYHV 138
N+ F DLLGK V + P V D +E+ V K + V
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE---TILTV 114
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
E+ L + +E A G+ + AV+ VP +F+ + ++++KA E AGL VLQL+ +
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
A L Y + + + V+ D G T VS+++ RG + T +L
Sbjct: 175 AAALLAYDAGEPTEDEALDRNVVVA-DFGGTRTDVSVIA-------VRGGLYT-----IL 221
Query: 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 318
+D LGG + L K+F KKT D N RA+AKL E+ K LSA+
Sbjct: 222 ATAHDPGLGGDTLDDALVKHFAKEFT--KKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378
+E L + IDF + R FE L +F + V A+ + + I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 379 AGTRVPKVQEKI-------TKVVG-VELSKNLNTDEAAALGAVYKAA 417
PK+ + T + + +SK L+ E A G +A+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 146 bits (372), Expect = 1e-38
Identities = 93/280 (33%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
EEL +++L +E A G+ + EAVI VP YFN +R++ +AGELAGLKV +L+N+
Sbjct: 85 EELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEP 144
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
TA AL YG KD V +D+G + VS++ G +E +
Sbjct: 145 TAAALAYG-LHDKDEETKFLV----FDLGGGTFDVSVLELF------DGVMEVR---ASA 190
Query: 259 GVGYDRTLGGLEM-QIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 317
G D LGG + + FL K + + D P +A+L + A R K LS
Sbjct: 191 G---DNYLGGEDFTRALAEAFLKK--HGLDFEKLD----PSELARLLRAAERAKRALSDQ 241
Query: 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
E A++ I+ + + +TR EFE + + L +R+ P+E+AL+ + + I ++ILV
Sbjct: 242 EE--AEMSVRIEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILV 299
Query: 378 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417
G TR+P V++ ++++ G +LN DE ALGA +A
Sbjct: 300 GGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQAG 339
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 151 bits (383), Expect = 4e-38
Identities = 184/658 (27%), Positives = 304/658 (46%), Gaps = 96/658 (14%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
V+ +DLG+ VA++ G P I N E R TP++VA+ K G+ G+ A+ P
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIP-NAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N++ +G+ + + +++ Y + D + N+ + EE+ A +
Sbjct: 63 ENTFYSVKRFIGRKFSE-ISE--EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K E AS G+ + +AVI VP YFN +RQ+ AG++AGL+VL+++N+ TA +L Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K+ NET ++ +D+G + VSI+ G E VL D
Sbjct: 180 GLDKKN--NET----ILVFDLGGGTFDVSILEVG------DGVFE------VLSTSGDTH 221
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS---------- 315
LGG + ++ ++L K+F KK D+ ++ +A+ +L + A + K LS
Sbjct: 222 LGGDDFDKKIVNWLIKEFK--KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLP 279
Query: 316 ---ANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 372
A IE + TRA+FE L DL +R PVE ALK + + I
Sbjct: 280 FITATQTGPKHIEKTL---------TRAKFEELCSDLINRCRIPVENALKDAKLDKSDID 330
Query: 373 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 432
+V+LVG TR+P +QE + K++G + ++++N DE A+GA +A L+ +VK + D
Sbjct: 331 EVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAG--EVKDILLLD 388
Query: 433 IVLYPIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIE 491
+ + V E+ G TKII R + T P KK F+ V D NV EI
Sbjct: 389 VTPLSLGV----ETLGGVMTKIIPR-----NTTIPTKKSEVFSTAV-DNQTNV----EIH 434
Query: 492 HLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNI 548
L E+ K + F + G+ A +G I+ F +D +GILS+
Sbjct: 435 VLQGERELAKDNKSLGTFRLDGIPPA----------PRGVPQIEVTFDIDANGILSVTAK 484
Query: 549 ELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNV---NS 605
+ K+++ T+ + K DE E+ + EA ++ +E + + N
Sbjct: 485 DKGTGKEQSI---------TIQGASTLPK-DEVERMVKEA-EKNAAEDKEKREKIDLKNQ 533
Query: 606 TESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKL 663
ES AE+ +K +KK KI + + R + N + ++ L +L
Sbjct: 534 AESLCYQAEKQLKELKDKISEEKKEKIENL-----IKKLRQALQNDNYESIKSLLEEL 586
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 144 bits (363), Expect = 1e-35
Identities = 157/613 (25%), Positives = 265/613 (43%), Gaps = 69/613 (11%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
V+ VDLG+ + VA + + N E R TP++VAF E+ G A+ P
Sbjct: 29 VIGVDLGTTYSCVATMDGDKA-RVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQ 87
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
+++ L+G+ + +Q PY + A G + + + Y ++ A +L
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGN--GDAWVQDGNGKQYSPSQIGAFVL 145
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K +E A G ++ AV+ P YFN +RQ+ AG +AGL V++++N+ TA AL YG
Sbjct: 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG 205
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
+ K KD + YD+G + +S++ G E V D L
Sbjct: 206 MDKTKD------SLIAVYDLGGGTFDISVLEIA------GGVFE------VKATNGDTHL 247
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAG-RLKNVLSANNEHFAQIE 325
GG + + L D++ E +KT+ R + +EA + K LS+ E +
Sbjct: 248 GGEDFDLALSDYI---LEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLP 304
Query: 326 GLIDEID----FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
+ D ++ ++R++FE + + L +R P +Q +K + V + I+ V+LVG T
Sbjct: 305 FITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMT 364
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
R+PKV E++ K + + +N DEA ALGA L VK + D+ + +E
Sbjct: 365 RMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRG--DVKGLVLLDVTPLSLGIE 422
Query: 442 FERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAM 500
G + RM+ P NT P KK TF+ D V I+ E+
Sbjct: 423 -----TLGG--VFTRMI--PKNTTIPTKKSQTFST-AADNQTQVG----IKVFQGEREMA 468
Query: 501 LGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQEA 557
+ + +FD+ G+ A +G I+ F +D +GI + + K +
Sbjct: 469 ADNQMMGQFDLVGIPPA----------PRGVPQIEVTFDIDANGICHVTAKDKATGKTQ- 517
Query: 558 AESPLSKLGNTLTSLFSRSKTD-ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEES 616
T+T+ SK E +E E ++ E + N+ E+Q +AE
Sbjct: 518 --------NITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQ 569
Query: 617 VKNATQTPDADKK 629
+ DA+K+
Sbjct: 570 LGEWKYVSDAEKE 582
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 143 bits (361), Expect = 3e-35
Identities = 182/639 (28%), Positives = 292/639 (45%), Gaps = 89/639 (13%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VAI+ P I N E R TP++VAF + G+R G A+ P
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIE-NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNP 101
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ L+G+ D + + PY + A I + Y ++ A +
Sbjct: 102 ENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWI---EAQGKKYSPSQIGAFV 158
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K +E A G+ + +AVI VP YFN +RQ+ AG++AGL VL+++N+ TA AL +
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K N+ + V YD+G + +SI+ G E V + +
Sbjct: 219 GMDK----NDGKTIAV--YDLGGGTFDISILEIL------GGVFE------VKATNGNTS 260
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 320
LGG + R+ ++L +F K+ D+ ++ A+ +L + A K LS+ N
Sbjct: 261 LGGEDFDQRILNYLIAEFK--KQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLP 318
Query: 321 F--AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378
F A G + KL +RA+ E L DL + P E+ +K + V D ++ VILVG
Sbjct: 319 FITADQSG-PKHLQIKL--SRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVG 375
Query: 379 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPI 438
TR+PKV E + K+ G E SK +N DEA A+GA +A V K KD++L +
Sbjct: 376 GMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAG-------VLKGEIKDLLLLDV 428
Query: 439 -QVEFERESESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 496
+ E+ G T++I R + T P KK F+ D V I+ E
Sbjct: 429 TPLSLGIETLGGVFTRLINR-----NTTIPTKKSQVFST-AADNQTQVG----IKVFQGE 478
Query: 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVV- 552
+ K + +FD+ G+ A +G I+ F +D +GI+++ ++
Sbjct: 479 REMAADNKLLGQFDLVGIPPA----------PRGVPQIEVTFDVDANGIMNISAVDKSTG 528
Query: 553 EKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNV----NSTES 608
+KQE T+ S S +E EK + EA E K +E K + N E+
Sbjct: 529 KKQEI----------TIQSSGGLSD-EEIEKMVKEA--EEYKEQDEKKKELVDAKNEAET 575
Query: 609 QQQSAEESVKN-ATQTPDADK---KPKIVTVKEPISASE 643
S E+ + + + DADK K KI ++ +S+ +
Sbjct: 576 LIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSED 614
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 142 bits (360), Expect = 4e-35
Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 41/394 (10%)
Query: 21 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 80
H +AV +DLG+ VA V G E+ +++ + P++V + + G +A+
Sbjct: 16 HQRRLAV-GIDLGTTNSLVATVRSGQA-EVLPDEQGRVLLPSVVRYLEDGIEVGYEARAN 73
Query: 81 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY--YDIVADEERGTIVFKTNDNELYHV 138
+ P N+ +G+S+ + R+P+ Y VA E G + +T V
Sbjct: 74 AAQDPKNTISSVKRFMGRSLADI-----QQRYPHLPYQFVASEN-GMPLIRTAQGLKSPV 127
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
E + A +L R+ A + G ++ AVI VP YF+ +RQ+ A LAGL VL+L+N+
Sbjct: 128 E-VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEP 186
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
TA A+ YG+ D + V + YD+G + +SI+ +G E VL
Sbjct: 187 TAAAIAYGL----D-SGQEGVIAV-YDLGGGTFDISILRL------SKGVFE------VL 228
Query: 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 318
G D LGG + L D++ +++ +P L A K LS
Sbjct: 229 ATGGDSALGGDDFDHLLADWI------LEQAGLSPRLDPEDQRLLLDAARAAKEALSDA- 281
Query: 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378
+E + ++ +TR +F AL L R +AL+ + V D + +V++VG
Sbjct: 282 ---DSVE--VSVALWQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVG 336
Query: 379 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
TRVP V+E + + G +++ D+ A+GA
Sbjct: 337 GSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGA 370
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 141 bits (356), Expect = 1e-34
Identities = 160/531 (30%), Positives = 256/531 (48%), Gaps = 67/531 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
V+ +DLG+ VA++ G P+ I N E R TP++V F K G+R G+ A+
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ +G+ D + +SR PY + ++ + + + Y +E+ AM+
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEE--RSRVPYTCVKGRDDTVNVQIRGRN---YTPQEISAMI 117
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K ++ A G+ + +AVI VP YF +RQ+ AG +AGL+VL+++N+ TA AL Y
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K +D + ++ +D+G + VSI+ G E V +
Sbjct: 178 GLDK-QDQEQ----LILVFDLGGGTFDVSILQLG------DGVFE------VKATAGNNH 220
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 320
LGG + + D+L + F + + D+ ++ A+ +L + A + K LS+ N
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEG--IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLP 278
Query: 321 FAQIEGLIDEIDFKLL---VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
F DE K L +TRA+FE L +DL + P++QALK + + + I +VILV
Sbjct: 279 FITA----DETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILV 334
Query: 378 GAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 436
G TR+P VQE I K G + +++N DEA ALGA +A L G +VK + D+
Sbjct: 335 GGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL--GGEVKDLLLLDVT-- 390
Query: 437 PIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 496
P+ + E E TKII+R + T P K F+ D +V EI L E
Sbjct: 391 PLSLGIETLGEVF-TKIIER-----NTTIPTSKSQVFSTAT-DGQTSV----EIHVLQGE 439
Query: 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILS 544
+ K + KF ++G+ A +G I+ F +D +GIL
Sbjct: 440 RAMAKDNKSLGKFLLTGIPPA----------PRGVPQIEVSFEIDVNGILK 480
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 134 bits (339), Expect = 1e-33
Identities = 106/400 (26%), Positives = 191/400 (47%), Gaps = 33/400 (8%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT-PTLVAFHKGERTFGEDAQIIGTRFP 85
++ +DLG+ + V + G + E+ RK+ P++VAF G G A P
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV--EELVA 143
N+ +GK ++ R+ + + + G F NE V EE+ +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRF-KVKINSRNGAFFFSVLTNETKTVTPEEIGS 140
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
L+ K R+ A G + +AVI VP F++ +R + +KA LAGL+VL+++N+ TA AL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K++D +V+ D+G + VS+++ K+ G ++ G +
Sbjct: 201 AYGLHKKQDV-----FNVLVVDLGGGTLDVSLLN------KQGGMF-----LTRAMAGNN 244
Query: 264 RTLGGLEMQIRLRDFL----GKKFNEMKKTTKDVFENPRAV--AKLFKEAGRLKNVLSAN 317
R LGG + RL +L +K+ ++ +D+ +AV AK+ L S
Sbjct: 245 R-LGGQDFNQRLLQYLYQKIYEKYGKVPDNKEDIQRLRQAVEAAKI-----NLTLHPSTT 298
Query: 318 NEHFAQIEGLIDEI-DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 376
+ + I F+ +TR EFE LNEDLF ++ P+E L + + + +++L
Sbjct: 299 ISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVL 358
Query: 377 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416
VG TR+P++++ I + G + + +++ + A G +A
Sbjct: 359 VGGSTRIPRIRQVIGRFFGKDPNTSVDPELAVVTGVAIQA 398
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 87.2 bits (216), Expect = 1e-17
Identities = 132/592 (22%), Positives = 234/592 (39%), Gaps = 107/592 (18%)
Query: 19 FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 78
F+ IAV +D G+ +AI + +++ + + K PT + F T G +
Sbjct: 14 FKQERQIAV-GIDFGTTNSLIAI-ATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNKG 71
Query: 79 IIGTRFPSNSYGYFLDLLGKS----IDSPVV-QLFKSRFPYYDIVADEERGTIVFKTNDN 133
+ + L GK+ +++P + L K Y D+ + E + K
Sbjct: 72 LRSIK----------RLFGKTLKEILNTPALFSLVKD---YLDVNSSELKLNFANKQ--- 115
Query: 134 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQ 193
+ E+ A + + A I +AVI VP +FN R ++ A ++AG +VL+
Sbjct: 116 --LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 194 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253
L+ + TA A YG+ K N+ V YD+G + VSI + +E F
Sbjct: 174 LIAEPTAAAYAYGLNK----NQKGCYLV--YDLGGGTFDVSI-----LNIQEGIF----- 217
Query: 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKF--NEMKKTTKDVFENPRAVAKLFKEAGRLK 311
V+ D LGG ++ + + +L KF T + +AK KE L
Sbjct: 218 --QVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQ--------LAKKAKET--LT 265
Query: 312 NVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVI 371
S NN+ + + + E L L +R ++ L+ + P I
Sbjct: 266 YKDSFNND--------------NISINKQTLEQLILPLVERTINIAQECLEQAGNPN--I 309
Query: 372 SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITK 431
VILVG TR+P +++++ K V++ +++ D+A GA +A +L I
Sbjct: 310 DGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLI-- 367
Query: 432 DIVLYPIQVEFERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGD---FNFNVSYA 487
D+V + +E G + I NT P + F Y + F++
Sbjct: 368 DVVPLSLGMEL----YGGIVEKII-----MRNTPIPISVVKEFTTYADNQTGIQFHI--- 415
Query: 488 SEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSL-- 545
L E+ + +++F++ G+ A S + FA+D GILS+
Sbjct: 416 -----LQGEREMAADCRSLARFELKGLPPM-------KAGSIRAEVTFAIDADGILSVSA 463
Query: 546 ----VNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGN 593
N +E + +++ L + + +K D + + EAV E
Sbjct: 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAE 515
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 47.9 bits (115), Expect = 2e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 303 LFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALK 362
L + K LS+ +E +I+ E+ + VTRAEFE +R+ V++AL
Sbjct: 303 LARAVEAAKIALSSQDET--RIDLDFVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALA 360
Query: 363 SSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395
+ V D I +V L G + VP V++
Sbjct: 361 QAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFP 393
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 42.7 bits (101), Expect = 9e-04
Identities = 63/333 (18%), Positives = 118/333 (35%), Gaps = 38/333 (11%)
Query: 539 ESGILSL-VNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAE 597
S IL IE + EK E E +++L L L R + +E + E +++ K E
Sbjct: 669 NSSILERRREIEELEEKIEELEEKIAELEKALAEL--RKELEE----LEEELEQLRKELE 722
Query: 598 EPSKNVNSTESQQQSAEESVKNATQTPD------ADKKPKIVTVKEPISASETRYGVSTL 651
E S+ +++ E V+ + + + +I ++E + +E +
Sbjct: 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
Query: 652 NEKQVEKSLSKL-DSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKT 710
+++E + +L + L + A L L + + +LE + +
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE----------SLERR 832
Query: 711 IVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALN 770
I + + LEE D+ EI L I E E + SL AL
Sbjct: 833 IAATERRLED-LEEQIEELSEDIESLAA-EIEELEELIEELESELEALLNERASLEEALA 890
Query: 771 VSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKS--- 827
+ + + LS E E EL+ L + + ++ E E + L++
Sbjct: 891 LLRSEL---EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
Query: 828 ------DPIVLTIRSIVEKIRALEREVRYLENK 854
+ I + R ++ LENK
Sbjct: 948 EYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Score = 30.0 bits (68), Expect = 7.4
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 5/176 (2%)
Query: 728 NAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYN-SIKNLSLNT 786
AE LE KL E+ V + E E Q+ AL + + L + NL
Sbjct: 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
Query: 787 NETED--LNLFSDIE--LKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR 842
E E L S ++ + L L + + KE+ E + +L++ + + + S +E++
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
Query: 843 ALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ 898
+R + +L +ASLN + E + E ++ + + E + E +
Sbjct: 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 40.4 bits (95), Expect = 0.005
Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 31/203 (15%)
Query: 656 VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKI 715
++ + +L+ L I+ + EKAL LES+L K E + E K +++ +
Sbjct: 280 YQELIEQLEEL--IDKYESHIEKALEELESILDTEKENSEFKLDVE-----ELKALLEAL 332
Query: 716 DEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTF 775
+EI + LE KL + ++ + + E++ + +A+N +
Sbjct: 333 EEILEKNLQ--------KLEEKLKDPSTSIELE-----SITDLIESINDIIDAINELIRE 379
Query: 776 YNS-IKNLSLNTNE-TEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLT 833
+N I NL N+ + L L + L I+ + K+ EK N L+K
Sbjct: 380 HNEKIDNLKKEKNKAKKKLWLH---LVAELKEDIDAYQKEKKGLEKAINSLEKE------ 430
Query: 834 IRSIVEKIRALEREVRYLENKSK 856
I+ + +I+ALE+E++ LE +
Sbjct: 431 IKQLEAEIKALEKEIKELEKQLT 453
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 38.9 bits (92), Expect = 0.010
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 44/173 (25%)
Query: 664 DSLNQIEHAKVRKEKALNSLES-----LLFDAKSKLELEEYSSVAAPNESKTIV--DKID 716
++ +++E + E++ ++E L+ DA L E+ + + IV +K D
Sbjct: 275 ETDDEVEKIGI--ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKAD 332
Query: 717 EITNWLEEDGWNAEA-----------DVLENKLNEI--------NSLVVPIWERHREHQE 757
E+ D L + E+ V RH E E
Sbjct: 333 LTGEIDLEEENGKPVIRISAKTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALE 392
Query: 758 RPEALKSLNNALN----------VSVTFYNSIKNLSLNTNE--TEDL--NLFS 796
R AL+ L AL ++ +++ L T E +EDL +FS
Sbjct: 393 R--ALEHLERALEGLESGLPLELLAEDLRLALEALGEITGEVTSEDLLDRIFS 443
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.9 bits (91), Expect = 0.013
Identities = 57/306 (18%), Positives = 127/306 (41%), Gaps = 21/306 (6%)
Query: 553 EKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQS 612
E+ E+ L KL L SL +++ + + ++E + EE + + + + +
Sbjct: 674 EELAELEAQLEKLEEELKSL--KNELRS----LEDLLEELRRQLEELERQLEELKRELAA 727
Query: 613 AEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEK--QVEKSLSKL-DSLNQI 669
EE ++ Q+ + + ++ ++E + + R + L E+ +E++L+KL + + ++
Sbjct: 728 LEEELE-QLQSRLEELEEELEELEEELEELQER--LEELEEELESLEEALAKLKEEIEEL 784
Query: 670 EHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITN-WLEEDGWN 728
E + ++ L LE L +A+ +L+ E + + EI E +
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALE---RELESLEQRRERLEQEIEELEEEIEELE 841
Query: 729 AEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNE 788
+ D LE +L E+ + + E E + + L + L ++ L E
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAE---KEELEDELKELEEEKEELEEE-LRELE 897
Query: 789 TEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRS-IVEKIRALERE 847
+E L +IE E K+ + + E + + + + T+ + + +I LE E
Sbjct: 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957
Query: 848 VRYLEN 853
+ L
Sbjct: 958 IEALGP 963
Score = 30.1 bits (68), Expect = 6.7
Identities = 57/285 (20%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 643 ETRYGVSTLNEKQVEKSLSKLDSL-----NQIEHAKVRKEKALN--SLESLLFDAKSKLE 695
+ R + ++ E++L +L+ L Q+E + + EKA L++ L + + L
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 696 LEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADV--LENKLNEINSLVVPIWERHR 753
L + E + +++++E + LEE+ + ++ E ++ E+ S + + E
Sbjct: 231 LAKL------KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284
Query: 754 EHQERPEALKSLNNALNVSVTFY-NSIKNLSLNTNETE--DLNLFSDIE----------- 799
E QE LK L ++ ++ L E E L IE
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET 344
Query: 800 -LKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLW 858
L+ L+ L+ E + KE+ E++ + L + + ++ E++ LE E+ + N+
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEE--LEELFEALREELAELEAELAEIRNE---- 398
Query: 859 MASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQ 903
+ L ++ ES ++ E + + K + E E E Q ++
Sbjct: 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEE 443
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 38.1 bits (89), Expect = 0.021
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 370 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFI 429
+++ L+G G + P ++ I ++ E+ +T+EAAALGA +AA TG
Sbjct: 394 KSTEIRLIGGGAKSPAWRQIIADIMNAEVVV-PDTEEAAALGAAIQAAWCLTGEDGADVA 452
Query: 430 TKDIVLYPIQV 440
++ +++
Sbjct: 453 LAELCDELVEL 463
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 38.1 bits (89), Expect = 0.022
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 338 TRAEFE----ALNEDLFDRVGYPVEQALK-SSAVPMDVISQVILVGAGTRVPKVQEKITK 392
TRA E AL + L L+ + +P I + L+G G + P ++ +
Sbjct: 365 TRAVLEGVTFALRDSL---------DILREAGGIP---IQSIRLIGGGAKSPAWRQMLAD 412
Query: 393 VVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
+ G + +E ALGA AA + ++ +V V
Sbjct: 413 IFGTPVDV-PEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVL 460
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 38.2 bits (88), Expect = 0.025
Identities = 87/386 (22%), Positives = 143/386 (37%), Gaps = 43/386 (11%)
Query: 553 EKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEA--VDEGNKTAEEPSK--NVNSTES 608
E ++ AE K + ++ K DE +K E DE K AEE K
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 609 QQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQ 668
+ + AEE+ K A + AD+ K +E A E + K+ E++ K D +
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKK--KAEEAKKADEAK--------KKAEEAKKKADEAKK 1504
Query: 669 IEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN 728
AK + ++A + E+ D K E + + A E K K DE+ E
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKKAE 1561
Query: 729 AEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNA-LNVSVTFYNSIKNLSLNTN 787
+ E K E E + E K A + + Y K +
Sbjct: 1562 EKKKAEEAKKAE---------EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
Query: 788 ETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQ---NQLKKSDPIVLTIRSIVEKIRAL 844
+ + ELK + + + K+K +E+ +LKK++ KI+A
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE--------ENKIKAA 1664
Query: 845 EREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQE 904
E + E+K K A KK E KK + K + + K E ++ + EE+ ++
Sbjct: 1665 EEAKKAEEDKKK---AEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 905 PLTPKPSPSPVDETT--TPEDKTKTE 928
+ + +E EDK K E
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAE 1747
Score = 31.3 bits (70), Expect = 3.8
Identities = 78/368 (21%), Positives = 131/368 (35%), Gaps = 21/368 (5%)
Query: 577 KTDENEKPINEA---VDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIV 633
K DE +K EA D K AEE K + +++ ++A + + A + +A +K K
Sbjct: 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
Query: 634 TVKEPISASETRYGVSTLNE--KQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAK 691
K+ +A + +E K+ E+ K D L + AK + ++A E +
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 692 SKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL---ENKLNEINSLVVPI 748
+K + EE + K +E EE EA K +E
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
Query: 749 WERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDI----ELKSLD 804
++ E ++ EA K + A + + ++ + ELK +
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
Query: 805 TLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNK 864
L + K + K+ + K E+ R E Y E K K+ K
Sbjct: 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK-KMKAEEAKK 1614
Query: 865 KKESTSK----KKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTT 920
+E+ K KK ++ K K K E+ K EE ++E + E
Sbjct: 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE--- 1671
Query: 921 PEDKTKTE 928
EDK K E
Sbjct: 1672 -EDKKKAE 1678
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 35.1 bits (81), Expect = 0.089
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 864 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 919
K K+ SKKK+DK K+K DK ++ + E + + + + S + E
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 34.2 bits (79), Expect = 0.20
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 874 EDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTP 921
E +P + K KP E + KP+ Q + P PKP P PV E
Sbjct: 98 EPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP-APKPEPKPVVEEKAA 144
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 35.0 bits (81), Expect = 0.25
Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 15/174 (8%)
Query: 728 NAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTN 787
NA+ L +L ++ + R ++ ++ + ++
Sbjct: 1030 NAKKKDLVKELKKLGYV------RFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELG 1083
Query: 788 ETEDLN-LFS----DIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR 842
+ L S + + ++ L E EK EKE +LK + P + + + +
Sbjct: 1084 AAVSYDYLLSMPIWSLTKEKVEKLNAE----LEKKEKELEKLKNTTPKDMWLEDLDKFEE 1139
Query: 843 ALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPE 896
ALE + E + +K K SK ++ K K K+ K K S + K
Sbjct: 1140 ALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS 1193
>gnl|CDD|233844 TIGR02392, rpoH_proteo, alternative sigma factor RpoH. A sigma
factor is a DNA-binding protein protein that binds to
the DNA-directed RNA polymerase core to produce the
holoenzyme capable of initiating transcription at
specific sites. Different sigma factors act in
vegetative growth, heat shock, extracytoplasmic
functions (ECF), etc. This model represents the clade of
sigma factors called RpoH and further restricted to the
Proteobacteria. This protein may be called sigma-32,
sigma factor H, heat shock sigma factor, and alternative
sigma factor RpoH. Note that in some species the single
locus rpoH may be replaced by two or more differentially
regulated stress response sigma factors [Cellular
processes, Adaptations to atypical conditions,
Transcription, Transcription factors].
Length = 270
Score = 33.8 bits (78), Expect = 0.30
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 493 LNPEQIAMLGTK-QISKFDV-------SGVSEAFGKHNEENAESKGIKAHFAMDESGILS 544
LNPE++ + + +S+ +V SG + +++ + G + +D+
Sbjct: 137 LNPEEVEAIAEELGVSEREVREMESRLSGQDMSLNASIDDDEDDGGAPIAYLVDKRS--- 193
Query: 545 LVNIELVVEKQEAAESPLSKLGNTLTSLFSRS-------KTDENEKPINEAVDEGNKTAE 597
+ E +E+++ E L N L SL +RS D+++ + E E +AE
Sbjct: 194 --DPEDTLEEEQWEELQRQALANALGSLDARSRRIIEARWLDDDKLTLQELAAEYGVSAE 251
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 33.7 bits (77), Expect = 0.44
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 816 KSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKED 875
+EK + + +K + I +K RA ERE+ + + + + + + K K+
Sbjct: 337 TAEKNEAKARK--------KEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKK 388
Query: 876 KPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVD 916
+ ++ PSE E+SK P PS D
Sbjct: 389 GLIDASPNEDTPSENEESKGSPPQVEATTTAEPNREPSQED 429
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 34.0 bits (78), Expect = 0.46
Identities = 66/338 (19%), Positives = 140/338 (41%), Gaps = 40/338 (11%)
Query: 547 NIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNST 606
I+L+ EK EA + + N L + ++K+ E+ + A E NK E +K S
Sbjct: 1078 EIKLLEEKVEALLKKIDENKNKLIEI--KNKSHEH---VVNADKEKNKQTEHYNKKKKSL 1132
Query: 607 ESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 666
E + E+ T+KE + + ++ +NE ++E +D +
Sbjct: 1133 EKIYKQMEK------------------TLKELENMNLEDITLNEVNEIEIEYERILIDHI 1174
Query: 667 -----NQIEHAKVRKEKALNSLESL-LFDAKSKLE----LEEYSSVAAPNESKTIVDKID 716
N+ + +K E+ + + + E L + A +++ + I+
Sbjct: 1175 VEQINNEAKKSKTIMEEIESYKKDIDQVKKNMSKERNDHLTTFEYNAYYDKATASYENIE 1234
Query: 717 EITNWLEEDGWNAEADVLENKLNEINSLVVPIWERH-REHQERPEALKSLNN--ALNVSV 773
E+T + A ++L EI V ++ +E+ + AL + N +S+
Sbjct: 1235 ELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVIKENNKMENALHEIKNMYEFLISI 1294
Query: 774 TFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLT 833
+K + +T + E+ + + EL+ D LI + + E++++ +N++ S L
Sbjct: 1295 DSEKILKEILNSTKKAEEFSNDAKKELEKTDNLIKQVEAKIEQAKEHKNKIYGS----LE 1350
Query: 834 IRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSK 871
+ I ++I+ +E+ + NK K L+ K + K
Sbjct: 1351 DKQIDDEIKKIEQIKEEISNKRKEINKYLSNIKSNKEK 1388
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 33.2 bits (76), Expect = 0.74
Identities = 13/70 (18%), Positives = 24/70 (34%)
Query: 859 MASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDET 918
+ + KKEDK K + ++ K E + G+ + P S +
Sbjct: 45 EENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKK 104
Query: 919 TTPEDKTKTE 928
P+ K +
Sbjct: 105 KPPKPKPNED 114
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 33.1 bits (76), Expect = 0.75
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 860 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 919
A K +KPK P + P + KP P+PV
Sbjct: 128 APAAAAAAKAEKTTPEKPKAAAPTPEPP-AASKPTPPAAAKPPEPAPAAKPPPTPVARAD 186
Query: 920 TPE 922
E
Sbjct: 187 PRE 189
Score = 32.0 bits (73), Expect = 1.4
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 871 KKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKT 927
P + K +T KP+ + P KP+P + P K
Sbjct: 123 APPAAAPAAAAAAK--AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKP 177
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 32.3 bits (74), Expect = 0.79
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 871 KKKEDKPKNKDSDKTKP--SETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKT 925
K E KPK K K KP EQ K E +P + P +P + +P T++
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR-PASPFENTAPARPTSSTATAA 148
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This
family represents the phosphoprotein of Paramyxoviridae,
a putative RNA polymerase alpha subunit that may
function in template binding.
Length = 266
Score = 32.5 bits (74), Expect = 0.85
Identities = 14/68 (20%), Positives = 22/68 (32%)
Query: 860 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 919
S++ +K +T +K + P K + D E + KP D T
Sbjct: 32 QSISGEKVNTISEKFELPTISKPTTPKGPCIKDEIISVNKVKDIESIYEKPVTPTSDGKT 91
Query: 920 TPEDKTKT 927
E T
Sbjct: 92 PTEKSDDT 99
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 33.0 bits (75), Expect = 0.88
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 881 DSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSP 914
D+T+P E++ P PA E P P
Sbjct: 408 AHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDP 441
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 30.7 bits (68), Expect = 1.0
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 850 YLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQE 904
++ N+ ++ + KKE+ +KK +KP+N+D K + E E K E+P + E
Sbjct: 45 FISNEDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDE 99
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 32.5 bits (75), Expect = 1.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 350 FDRVGYPVEQALKSSAVPMDVISQVILVGA 379
+R+ Y EQAL + + ++LVGA
Sbjct: 246 VERLPYFAEQALAQ----LAGVRHLVLVGA 271
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 32.6 bits (75), Expect = 1.0
Identities = 19/82 (23%), Positives = 38/82 (46%)
Query: 817 SEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDK 876
+E+E L S I+ IVEK E + + K +++E +KKE++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 877 PKNKDSDKTKPSETEQSKPEEQ 898
+ ++ + + E E+ K ++Q
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKKQ 476
Score = 29.5 bits (67), Expect = 8.9
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 845 EREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQE 904
E E+ +L K KK + +K E K + + +K K + + K EE+ ++
Sbjct: 396 EEEIEFLTGSKKA-----TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Query: 905 PLTPKPSPSPVDETTTPEDKTK 926
K E E++ K
Sbjct: 451 KEEEKEEEEEEAEEEKEEEEEK 472
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 32.3 bits (73), Expect = 1.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 856 KLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPA 900
+++ +SL + E K K + K ++ KP ++ KPE+ P+
Sbjct: 87 RIFQSSLKNRTEIKVKPKNNPQKKQNIKPVKPIPSKPEKPEDSPS 131
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 32.1 bits (74), Expect = 1.5
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 777 NSIKNLSLNTNETED----LNLFSDIE------LKSLDTLINETKVWKEKSEKEQNQLKK 826
+ SL +E+E L F + K+ + + +K K + +LK+
Sbjct: 202 EDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKE 261
Query: 827 S-----------DPIVLTIRSIVEKIRALEREVRYLENKSKL 857
D +V +R I +++R ERE+ L + K+
Sbjct: 262 ELKSLRLTSKQIDELVEQLRDINKRVRGQERELLRLVERLKM 303
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 32.1 bits (73), Expect = 1.5
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 860 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQS---------KPEEQPAGDQEP-LTPK 909
+ + +SK E + + KP ++ +S P + ++EP TP
Sbjct: 59 PGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPD 118
Query: 910 PSPS 913
P S
Sbjct: 119 PIAS 122
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 32.1 bits (73), Expect = 1.6
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 866 KESTSKKKEDKPKNKDSDKT-----KPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTT 920
S SK+ E KP+ K ++ T KP E S+ + ++ PS + ++
Sbjct: 27 TSSNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPD 86
Query: 921 PEDKTKT 927
P +
Sbjct: 87 PSKNKEE 93
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 31.6 bits (73), Expect = 1.6
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
E ++ + K + + VI VP ++ER++++ A AG + + L+ +
Sbjct: 72 EAMLRYFIKKVKGRSLFF----RPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEP 127
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237
A A+ G+ + P M D+G +T ++++S
Sbjct: 128 LAAAIGAGL------DIFEPKGNMVVDIGGGTTEIAVIS 160
>gnl|CDD|215126 PLN02204, PLN02204, diacylglycerol kinase.
Length = 601
Score = 31.8 bits (72), Expect = 1.9
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 817 SEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKED- 875
SE E+ + + K R+ E EV YLE +S+ AS +K + KK E
Sbjct: 392 SESEKYRWMGPKRYDYAGTKVFLKHRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKI 451
Query: 876 ------KPKNKDSDKTKPSETEQSKPEEQ 898
N PS T S PEE
Sbjct: 452 VCRTNCSVCNTKVSTNSPSTTPNSCPEET 480
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 31.9 bits (72), Expect = 1.9
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 884 KTKPSETEQSKPEEQPAGDQEPLT-PKPSPSPVDETTTPEDKT 925
+ P + P P + P T P P P P D T
Sbjct: 330 QPLPEVSPAENPANNPNPRENPGTRPNPEPDP-DLNPDANPDT 371
Score = 30.3 bits (68), Expect = 5.2
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 868 STSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKT 927
+ + P+ + P P+ P D +P T SP+ D K +
Sbjct: 338 AENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPNGRHRKERK 397
Query: 928 E 928
E
Sbjct: 398 E 398
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 31.2 bits (70), Expect = 2.2
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 816 KSEKEQNQLKKSDPIVLTIRSIVEKI-RALEREVRYLENKSKLWMASLNKKKESTSKKKE 874
K KE + L+ ++++ ++ +I R LE K + ++ LN+ K K K
Sbjct: 92 KKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKP-VQLSDLNRLKPHMMKTKS 150
Query: 875 DKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPS 913
K ++ +K + E + + E+Q Q+P +
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQ 189
>gnl|CDD|198341 cd10308, GST_C_eEF1b_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of eukaryotic
translation Elongation Factor 1 beta. Glutathione
S-transferase (GST) C-terminal domain family, eukaryotic
translation Elongation Factor 1 beta (eEF1b) subfamily;
eEF1b is a component of the eukaryotic translation
elongation factor-1 (EF1) complex which plays a central
role in the elongation cycle during protein
biosynthesis. EF1 consists of two functionally distinct
units, EF1A and EF1B. EF1A catalyzes the GTP-dependent
binding of aminoacyl-tRNA to the ribosomal A site
concomitant with the hydrolysis of GTP. The resulting
inactive EF1A:GDP complex is recycled to the active GTP
form by the guanine-nucleotide exchange factor EF1B, a
complex composed of at least two subunits, alpha and
gamma. Metazoan EFB1 contain a third subunit, beta.
eEF1b contains a GST_C-like alpha helical domain at the
N-terminal region and a C-terminal guanine nucleotide
exchange domain. The GST_C-like domain likely functions
as a protein-protein interaction domain, similar to the
function of the GST_C-like domains of EF1Bgamma and
various aminoacyl-tRNA synthetases (aaRSs) from higher
eukaryotes.
Length = 82
Score = 28.9 bits (65), Expect = 2.2
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 316 ANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDR---VGYPVEQA 360
++H + G+ + F L T EALNE L DR GY QA
Sbjct: 6 TESKH-KLLLGVSLDGSFADLKTDKGLEALNEYLADRSYISGYSPSQA 52
>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
Length = 90
Score = 29.3 bits (66), Expect = 2.3
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 565 LGNTLTSLFSRSKTDENE--KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEES 616
LG TL SK ENE + + E E AE S N +Q AE S
Sbjct: 34 LGKTLKGFQEASKEFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENS 87
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 31.4 bits (71), Expect = 2.3
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 859 MASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQS---KPEEQPAGDQEPLTPKPSPSPV 915
S ++S++ K + K +K P +T + PE P +E K SPS +
Sbjct: 244 ETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLL 303
Query: 916 DETTTPE 922
+ E
Sbjct: 304 SPSPKAE 310
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.4 bits (71), Expect = 2.4
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 869 TSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 928
T +++ED K KD + + K + P +E KP+ SP + + P +
Sbjct: 187 TVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSG 246
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 31.3 bits (71), Expect = 2.5
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 861 SLNKKKESTSKKKEDKPKNKDSDKT-KPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 919
S N K STS K+ + PK +++ ++ + ++ + D + ++ S +D+ +
Sbjct: 178 SSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYS 237
Query: 920 TPEDKTKTE 928
ED KT+
Sbjct: 238 --EDAKKTQ 244
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 31.5 bits (71), Expect = 2.5
Identities = 59/318 (18%), Positives = 125/318 (39%), Gaps = 44/318 (13%)
Query: 575 RSKTDENEKPINEA--VDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQT-PDADKKPK 631
+++ D + I EA + + KT E + + S ++ ++ ++K +Q P +K K
Sbjct: 277 KTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLK 336
Query: 632 --IVTVKEPISA-----SETRYGVST--LNEKQVEKSLSKLDSLN-QIEHAKVRKEKALN 681
I +E I A E + ++ +Q E + + L +++ ++ +K
Sbjct: 337 SEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDK--- 393
Query: 682 SLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEI 741
L + K + + S + +++ I + + + ++ + +L
Sbjct: 394 -LTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPK 452
Query: 742 NS-----LVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFS 796
S + I E + E QER + + N S+T IKNL + NE +
Sbjct: 453 GSGINESIKKSILELNDEIQERIKTEE------NKSITLEEDIKNLKHDINELTQILEKL 506
Query: 797 DIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 856
++EL ++ + KE++E+E + +I LE+E+ L SK
Sbjct: 507 ELELSEANSKFELS---KEENERELVAQRI-------------EIEKLEKELNDLNLLSK 550
Query: 857 LWMASLNKKKESTSKKKE 874
+ + +ST K +
Sbjct: 551 TSILDAEQLVQSTEIKLD 568
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 30.9 bits (70), Expect = 2.6
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 864 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTT 920
+K+ + S+ KEDK + D+ E E+ E ++E T + + S V++ T
Sbjct: 69 EKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE--TEEKTESNVEKEIT 123
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 31.4 bits (71), Expect = 2.6
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 814 KEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKK 873
K++ KE+ + +K R EK + E++V ++ + + K K
Sbjct: 120 KKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPP 179
Query: 874 EDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDE 917
+ KP NK + + E+Q +E + KP V+E
Sbjct: 180 KKKPPNKKKEP--------PEEEKQRQAAREAVKGKPEEPDVNE 215
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 31.6 bits (71), Expect = 2.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 869 TSKKKEDKPKN-KDSDKTKPSETEQSKPEEQPAGDQEPLTPKPS-PSPVDETT 919
T K K K S ++ +E QS PE DQ + +P+ +PV+ TT
Sbjct: 423 TPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEHTT 475
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 31.4 bits (71), Expect = 2.8
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 882 SDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 928
+ +E EQ+ P E A ++ T P + P E
Sbjct: 34 TTPATSTEAEQTTPVESDATEEADNTETPVAA-TTAAEAPSSSETAE 79
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 31.1 bits (70), Expect = 3.1
Identities = 72/380 (18%), Positives = 141/380 (37%), Gaps = 38/380 (10%)
Query: 547 NIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNST 606
IE + E E L + L SL + + TD + + +A+ E + E + +
Sbjct: 400 KIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRD 459
Query: 607 ESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASET-----RYGVSTLNEKQVEKSLS 661
E +Q E+ K + D K ++ ++ +S E + VS L Q K S
Sbjct: 460 ERYEQEEFETYKKEFE----DLKEEVQNLQLKLSERELQLELLKEEVSKLASNQ-LKQRS 514
Query: 662 KLDSLN-QIEHAKVRKEKALNSLESLLFDAKSK-----LELEEYSSVAAPNESKTIVDKI 715
L+ + ++E + + EK L+ L + +S ++ S A ++ VD++
Sbjct: 515 DLERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRL 574
Query: 716 DEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVT- 774
+ E+ E D E + + + + QE+ EA + + +
Sbjct: 575 LDRLEKAEQ-----ERDDTEMEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLE 629
Query: 775 -------FYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKS 827
+ L +T + + L ++ K + + E+ QL+KS
Sbjct: 630 EAERLEKSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAEREQLVAQLEKS 689
Query: 828 DPIVLTIRSIVEKIRALER----EVRYLENKSKLWMAS-----LNKKKESTSKKKEDKPK 878
++ + + A R E R L+ ++ L S + + S SKKK+ + +
Sbjct: 690 QQSLMEFQQELNAAEAERRKHLEENRELKQEALLAAISEKDANIALLELSASKKKKTQEE 749
Query: 879 NKDSDKTKPSETEQSKPEEQ 898
+ K EQ K + Q
Sbjct: 750 VALLRREKDKLVEQLKDQTQ 769
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.0 bits (70), Expect = 3.1
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 811 KVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTS 870
K +S ++ ++S + + + L+ + E K + ++ E
Sbjct: 232 KKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKE 291
Query: 871 KKKED---KPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKT 927
K+K K + + + +S EE+ + + EP P + E+ T +
Sbjct: 292 KEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEP------PPLPKKEEEKEEVTVS 345
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 30.8 bits (69), Expect = 3.3
Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 7/142 (4%)
Query: 783 SLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR 842
L E + ++ T ++ E+ Q ++ ++ ++ T S E+
Sbjct: 88 ELEAREVLINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPS--EQTV 145
Query: 843 ALEREVRYLENKSKLWMASLNKKKE-----STSKKKEDKPKNKDSDKTKPSETEQSKPEE 897
A+E + E K + + +K SK KE K K K K SKP E
Sbjct: 146 AVEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIE 205
Query: 898 QPAGDQEPLTPKPSPSPVDETT 919
+ KP P E
Sbjct: 206 TAPKADKADKTKPKPKEKAERA 227
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction also
removes the guanine base from the pool and therefore can
play a role in the regulation of cellular GTP and the
guanylate nucleotide pool.
Length = 429
Score = 30.7 bits (70), Expect = 3.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 247 GFVETH---PQVSVLGVGYDRTL 266
GF++TH PQ + +G G L
Sbjct: 66 GFIDTHIHAPQYANIGSGLGEPL 88
>gnl|CDD|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase from bacteria
and archaea. Peptidase M20 family, Bacterial and
archaeal Aminoacyclase-1 indole-3-acetic-L-aspartic acid
hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA
amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes
indole-3-acetyl-N-aspartic acid (IAA or auxin) to
indole-3-acetic acid. Genes encoding IAA-amidohydrolases
were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and
ILL2 encode active IAA- amino acid hydrolases, and three
additional amidohydrolase-like genes (ILL3, ILL5, ILL6)
have been isolated. In higher plants, the growth
regulator indole-3-acetic acid (IAA or auxin) is found
both free and conjugated via amide bonding to a variety
of amino acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 415
Score = 31.0 bits (71), Expect = 3.6
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV---PKVQEKITKVV 394
R E LN+ + ++ E+ +K +A V ++ +VG P++ + + +V
Sbjct: 288 VRGETTELNDYMAEQ----AERIIKGAAEMHGVDVEIEVVGEAISADSDPELIDLVEEVA 343
Query: 395 G 395
Sbjct: 344 E 344
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 30.8 bits (70), Expect = 4.1
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 20/150 (13%)
Query: 693 KLELEEYSSVAAPNESKTIVDK-IDEITNWLEEDGWNAEADVLE-NKLNEINSLVVPIWE 750
K +LEE+ P K+ D +DE+T L +DG+ ++ LE E
Sbjct: 77 KSDLEEHIDKDFPRLDKSKRDSYVDELTR-LFKDGYISDDPKLEFEVYLEFEEFNKKYNR 135
Query: 751 RHREHQERPEALKSLNNALNVSVTF---YNSIKNLSLNTNETEDLNLFSDIELKSLDTLI 807
+H H ER +TF Y +K+ + ++++N FSD+ + L
Sbjct: 136 KHATHAERLNRF----------LTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLF 185
Query: 808 NETKVWKEKSEKEQN-QLKK---SDPIVLT 833
KV + + N K S+P L
Sbjct: 186 PVIKVPPKSNSTSHNNDFKARHVSNPTYLK 215
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 30.8 bits (69), Expect = 4.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 866 KESTSKKKEDKPKNKDSDKT--KPSETEQSKPEEQPAGDQEPLTPKPSPSPVD 916
KES K+ KP + KP ++ KP + P ++P PK P D
Sbjct: 538 KESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKD 590
Score = 30.4 bits (68), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 872 KKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSP 914
K +P++ S K P S PE +P G + +PKP SP
Sbjct: 622 KSPKRPESPKSPKRPPPPQRPSSPE-RPEGPKIIKSPKPPKSP 663
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 29.5 bits (65), Expect = 4.2
Identities = 13/75 (17%), Positives = 30/75 (40%)
Query: 854 KSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPS 913
K K + ++ +D+P+ ++ + + E+ +PEE+ + EP
Sbjct: 41 KGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEP 100
Query: 914 PVDETTTPEDKTKTE 928
+ PE + + E
Sbjct: 101 EPEPEPEPEPEPEPE 115
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 29.8 bits (68), Expect = 4.5
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 816 KSEKEQNQL-----------KKSDPIVLTIRSIVEKIRALEREV 848
K++K + L K+ D +V +R +V+++RA ER++
Sbjct: 107 KAQKAREALAEEFMQFRLVPKQFDRLVDNLRGMVDRVRAQERQI 150
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 30.2 bits (68), Expect = 4.6
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 833 TIRSIVEKIRALEREVRYLENKSKLWMASLNKKKEST---SKKKED--------KPKNKD 881
T++ + EKI A + + Y + KL + + T K KE KPK
Sbjct: 22 TVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDFVVVMVSKPKTGT 81
Query: 882 SDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 928
P+ T S P P+ P +P S + E E
Sbjct: 82 GKVAPPAATPTSAPTPTPS---PPASPASGMSAAPASAVEEKSPSEE 125
>gnl|CDD|152206 pfam11770, GAPT, GRB2-binding adapter (GAPT). This is a family of
transmembrane proteins which bind the growth factor
receptor-bound protein 2 (GRB2) in B cells. In contrast
to other transmembrane adaptor proteins, GAPT is not
phosphorylated upon BCR ligation. It associates with
GRB2 constitutively through its proline-rich region.
Length = 158
Score = 29.2 bits (65), Expect = 5.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 877 PKNK-DSDKTKPSETEQSKPEEQPAGDQEPL------TPKPSPSPVDE 917
PK K +DK T+QS EE G++ P PS +P DE
Sbjct: 102 PKAKGTTDKALYENTQQSNLEEHIYGNETDPDYYNFQKPSPSEAPQDE 149
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 29.8 bits (67), Expect = 5.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 874 EDKPKN---KDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 928
E++P+ K + +T+ KP+ +P +P+ P P+P PV++ E +
Sbjct: 124 EEQPRTQSQKAQSQATTVQTQPVKPKPRPE-KPQPVAPAPAPEPVEKAPKAEAAPPPK 180
Score = 29.0 bits (65), Expect = 9.9
Identities = 9/65 (13%), Positives = 18/65 (27%)
Query: 863 NKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPE 922
+ +S + + K KP + PA + PK +P + +
Sbjct: 126 QPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAED 185
Query: 923 DKTKT 927
Sbjct: 186 AAETR 190
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 30.2 bits (69), Expect = 5.8
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLL--VTRAEFEALNEDLFDRVGYPVEQ 359
+L + A K LS E A + D I L +++ E R+ V+
Sbjct: 336 RLVRSAEEAKIALSDQAETRASL----DFISDGLATEISQQGLEEAISQPLARILELVQL 391
Query: 360 ALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395
AL + V DVI L G R P ++ + + +
Sbjct: 392 ALDQAQVKPDVI---YLTGGSARSPLIRAALAQQLP 424
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.0 bits (68), Expect = 7.8
Identities = 58/325 (17%), Positives = 116/325 (35%), Gaps = 52/325 (16%)
Query: 549 ELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTES 608
L+ EK+E L L + + + E +++ + E K + E
Sbjct: 215 ALLKEKREYEGYEL--LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
Query: 609 QQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL-- 666
+ + +K+ + K KI ++ I++ E + E+ L+KL++
Sbjct: 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
Query: 667 ----------NQIEHAKVRKEK---ALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVD 713
+IE + R++K L+ L D +++LE + +E K +
Sbjct: 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
Query: 714 KIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSV 773
K++++ EIN L + E Q E L LN A
Sbjct: 393 KLEKLK-------------------REINELKRELDRLQEELQRLSEELADLNAA----- 428
Query: 774 TFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLT 833
I + NE E+ +E+K + + + K E+E LK+
Sbjct: 429 -----IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE------E 477
Query: 834 IRSIVEKIRALEREVRYLENKSKLW 858
+ +++ L+RE+ E +++
Sbjct: 478 YDRVEKELSKLQRELAEAEAQARAS 502
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 29.7 bits (67), Expect = 8.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 867 ESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTP 921
E+T + +++ +T P ETE PEE+ +P PKP SP + + P
Sbjct: 215 EATPAAESPAEPAEETAETTPEETED-APEEENNKPVKPPVPKPYISPDEYPSAP 268
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 29.6 bits (66), Expect = 8.6
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 574 SRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPK 631
R ++DE EK + D+ + P ++V E EE ++ TQ K +
Sbjct: 190 KRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPI-EEGEEDQTQEEVKRSKER 246
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 29.9 bits (67), Expect = 9.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 852 ENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLT 907
E + +W + K+ +KKK+ K + P EQ E+ A EPL+
Sbjct: 108 EYGNPIWKNRVESWKDKKNKKKKSAKKKEAHKAQIP--PEQQMEEKPSADAYEPLS 161
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 29.3 bits (66), Expect = 9.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 80
G+ V SVD ++ A+ +P+E+AL + L KGE G DA ++
Sbjct: 300 GLGVGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKGEIQPGFDADLV 356
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 29.6 bits (66), Expect = 9.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 865 KKESTSKKKEDKPKNKDSDKTKPSETEQS--KPEEQPAGDQEPLTPKPSPSPVDETT 919
KK+ K+KE+K K K + ++ +P + A ++EPL P S + E +
Sbjct: 281 KKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPPMSSYKLLAENS 337
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 29.2 bits (66), Expect = 9.8
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 815 EKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKE 874
E S KE ++ + ++ + EKIR E+ + LE LN K E KK E
Sbjct: 300 EPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLE 359
Query: 875 DKPKNKDSDKTKPS 888
D K + K+ S
Sbjct: 360 DLEKRLEKLKSNKS 373
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 29.4 bits (66), Expect = 9.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 80
G+ V S + E ++ A+ VP+E AL + L KGE + G DA ++
Sbjct: 302 GLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLTGKGEISPGNDADLV 358
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 29.1 bits (65), Expect = 9.9
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 867 ESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTK 926
+ + KE K K P + KP+++ + + P + + D
Sbjct: 139 TAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSN-----RSVKMPGIDPRSKPDWKS 193
Query: 927 TEL 929
+L
Sbjct: 194 QDL 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.129 0.348
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,799,088
Number of extensions: 4550531
Number of successful extensions: 5150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4753
Number of HSP's successfully gapped: 292
Length of query: 929
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 823
Effective length of database: 6,236,078
Effective search space: 5132292194
Effective search space used: 5132292194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (28.4 bits)