RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7891
(929 letters)
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 323 bits (830), Expect = 7e-99
Identities = 160/711 (22%), Positives = 303/711 (42%), Gaps = 63/711 (8%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 89
+DLG+ +A+ +I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 90 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN---DNELYHVEELVAMLL 146
++G P + F + + + + + ++ +L AM +
Sbjct: 66 ANLKRIIGLDYHHPDFEQESKHFTSK--LVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 123
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 124 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 207 IFKR-KDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
IFK E P V F D+G S T SI+++ ++G ++ VLG D+
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF------KKGQLK------VLGTACDKH 231
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 232 FGGRDFDLAITEHFADEFK--TKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 289
Query: 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 385
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 290 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 349
Query: 386 VQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERE 445
+++ I++ G LS LN DEA A GA + A S +V+ F +DI Y + ++++
Sbjct: 350 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQ 409
Query: 446 SESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTK 504
E D ++ +++P K++T N+ GDF+ SY + Q+ +
Sbjct: 410 VEDEDHMEVFPA-----GSSFPSTKLITLNRT-GDFSMAASYT------DITQLPPNTPE 457
Query: 505 QISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSK 564
QI+ ++++GV E +S +K D SG+ ++ + + + +++ K
Sbjct: 458 QIANWEITGVQL------PEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVK 511
Query: 565 LGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEE---SVKNAT 621
+ LT + D + +NE +++ N+ + K V TE ++ + EE +++
Sbjct: 512 -KDDLTIVAHTFGLDAKK--LNELIEKENEMLAQ-DKLVAETEDRKNTLEEYIYTLRGKL 567
Query: 622 QTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALN 681
+ A S +E + L + K+ L K
Sbjct: 568 EEEYAPF----------ASDAE----KTKLQGM-LNKAEEWLYDEGFDSIKAKYIAK-YE 611
Query: 682 SLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 732
L SL + + +E A + + AE
Sbjct: 612 ELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKK 662
Score = 70.4 bits (173), Expect = 2e-12
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 616 SVKNATQTPDADKKPKIVTVKE---PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 672
+++ A D + TVK+ I A L+ K++ + + K + + +
Sbjct: 491 TIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFG-----LDAKKLNELIEKENEMLAQDKL 545
Query: 673 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 732
E N+LE ++ + KLE EEY+ A+ E + +++ WL ++G+++
Sbjct: 546 VAETEDRKNTLEEYIYTLRGKLE-EEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKA 604
Query: 733 VLENKLNEINSLVVPIWERHREHQERPEA 761
K E+ SL I R+ +E +
Sbjct: 605 KYIAKYEELASLGNIIRGRYLAKEEEKKQ 633
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 218 bits (558), Expect = 3e-63
Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 25/377 (6%)
Query: 49 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLD---LLGKSIDSPVV 105
EI N + R TP+ VAF ER G+ A+ P+N+ D L+G+ + V
Sbjct: 46 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT---IFDAKRLIGRKFEDATV 102
Query: 106 QLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELVAMLLHKAREYASVSAGQVINEA 164
Q +P+ +V++ + + + + EE+ +M+L K +E A G ++ A
Sbjct: 103 QSDMKHWPF-RVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSA 161
Query: 165 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY 224
VI VP YFN +RQ+ AG + GL VL+++N+ TA A+ YG+ K+ +V+ +
Sbjct: 162 VITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEK--NVLIF 219
Query: 225 DMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFN 284
D+G + VSI+ T E G E V D LGG + R+ L ++F
Sbjct: 220 DLGGGTFDVSIL------TIEDGIFE------VKSTAGDTHLGGEDFDNRMVSHLAEEFK 267
Query: 285 EMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 344
+K KD+ N RAV +L R K LS++ + +I+ L + +DF +TRA FE
Sbjct: 268 --RKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEE 325
Query: 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKV-VGVELSKNLN 403
LN DLF PVE+AL+ + + I +++LVG TR+PK+Q+ + G EL+K++N
Sbjct: 326 LNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN 385
Query: 404 TDEAAALGAVYKAADLS 420
DEA A GA +AA L
Sbjct: 386 PDEAVAYGAAVQAAILI 402
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 217 bits (556), Expect = 2e-61
Identities = 159/466 (34%), Positives = 237/466 (50%), Gaps = 47/466 (10%)
Query: 22 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 81
S G AV +DLG+ + V + G EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 82 TRFPSNSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYH 137
P+N+ D L+G+ D VVQ +P+ +V D R + + ++
Sbjct: 60 AMNPTNT---VFDAKRLIGRRFDDAVVQSDMKHWPF-MVVNDAGRPKVQVEYKGETKSFY 115
Query: 138 VEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMND 197
EE+ +M+L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+
Sbjct: 116 PEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINE 175
Query: 198 YTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 257
TA A+ YG+ K+ E N V+ +D+G + VSI+ T G E V
Sbjct: 176 PTAAAIAYGLDKKVG-AERN---VLIFDLGGGTFDVSIL------TIAAGIFE------V 219
Query: 258 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 317
D LGG + R+ + +F +K KD+ EN RAV +L R K LS++
Sbjct: 220 KSTAGDTHLGGEDFDNRMVNHFIAEFK--RKHKKDISENKRAVRRLRTACERAKRTLSSS 277
Query: 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
+ +I+ L + IDF +TRA FE LN DLF PVE+AL+ + + I ++LV
Sbjct: 278 TQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLV 337
Query: 378 GAGTRVPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 436
G TR+PK+Q+ + G EL+K++N DEA A GA +AA LS G K + +D++L
Sbjct: 338 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS-GDKSEN--VQDLLLL 394
Query: 437 ---PIQVEFERESESGD--TKIIKRMLFGPSNTY-PQKKILTFNKY 476
P+ + E +G T +IKR NT P K+ TF Y
Sbjct: 395 DVTPLSLGIET---AGGVMTVLIKR------NTTIPTKQTQTFTTY 431
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 211 bits (541), Expect = 5e-61
Identities = 131/399 (32%), Positives = 203/399 (50%), Gaps = 29/399 (7%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
V+ +DLG+ + VA++ G EI N++ R TP+ VAF ER G+ A+ P
Sbjct: 20 VIGIDLGTTYSCVAVMKNGKT-EILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQ 78
Query: 87 NSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELV 142
N+ D L+G + VQ P+ ++V + + + + ++ EE+
Sbjct: 79 NT---IFDIKRLIGLKYNDRSVQKDIKHLPF-NVVNKDGKPAVEVSVKGEKKVFTPEEIS 134
Query: 143 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 202
M+L K ++ A G + AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA A
Sbjct: 135 GMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAA 194
Query: 203 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
+ YG+ K E ++ YD+G + VS++ + E G E V
Sbjct: 195 IAYGLDKSDK--EHQ---IIVYDLGGGTFDVSLL------SIENGVFE------VQATSG 237
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
D LGG + ++ L K F KK DV +N +A+AKL +EA + K LS+
Sbjct: 238 DTHLGGEDFDYKIVRQLIKAFK--KKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRI 295
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
+I+ +D ID +TRA+FE LN DLF + PVE+ L+ S + + ++LVG TR
Sbjct: 296 EIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTR 355
Query: 383 VPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADLS 420
+PKVQ+ + G + SK +N DEA A GA +A LS
Sbjct: 356 IPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 180 bits (459), Expect = 5e-50
Identities = 122/413 (29%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 83
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143
P N+ L+G+ VQ S P+ I+A + G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPF-KIIAADN-GDAWVEVKGQK-MAPPQISA 117
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 319
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 320 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 367
H ++ K+ TRA+ E+L EDL +R ++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIELLKVALQDAGLS 330
Query: 368 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 178 bits (455), Expect = 1e-47
Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 83
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143
P N+ L+G+ VQ S P+ I AD G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN--GDAWVEVKGQK-MAPPQISA 117
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 319
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 320 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 367
H ++ K+ TRA+ E+L EDL +R P++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIEPLKVALQDAGLS 330
Query: 368 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 163 bits (415), Expect = 5e-43
Identities = 121/417 (29%), Positives = 187/417 (44%), Gaps = 91/417 (21%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ-------- 78
++ +DLG+ VA++ G I N E R TP++VAF GER GE A+
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN 62
Query: 79 -------IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 131
+GT Y +++ GK
Sbjct: 63 TIISIKRHMGTD-------YKVEIEGKQ-------------------------------- 83
Query: 132 DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 191
Y +E+ A++L + YA G+ + AVI VP YFN +RQ+ AG +AGL+V
Sbjct: 84 ----YTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEV 139
Query: 192 LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 251
+++N+ TA AL YG+ K +D +T ++ YD+G + VSI+ G E
Sbjct: 140 ERIINEPTAAALAYGLDKEED--QT----ILVYDLGGGTFDVSILELG------DGVFE- 186
Query: 252 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLK 311
V D LGG + + D+L +F ++ D+ ++ A+ +L A + K
Sbjct: 187 -----VKATAGDNHLGGDDFDQVIIDYLVNQFK--QEHGIDLSKDKMALQRLKDAAEKAK 239
Query: 312 NVLSANNEHFAQI--------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKS 363
LS + QI E ++ L TRA+FE L+ L +R PV QAL+
Sbjct: 240 KELSGVTQ--TQISLPFISANENGPLHLEMTL--TRAKFEELSAHLVERTMGPVRQALQD 295
Query: 364 SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+ + I +VILVG TR+P VQE I + +G E K +N DE A+GA + ++
Sbjct: 296 AGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIA 352
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.0 bits (204), Expect = 3e-16
Identities = 105/664 (15%), Positives = 204/664 (30%), Gaps = 194/664 (29%)
Query: 270 EMQIRLRDFLGKKFNEMKKT--TKDVFENPRAVAK------LFKEAGRLKNV-------L 314
E Q + +D L + KDV + P+++ + + L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 315 SANNEHFAQIEGLIDEIDFKLLVTRAEFE----ALNEDLF----DRVG--------YPVE 358
S E + + I++K L++ + E ++ ++ DR+ Y V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 359 -----QALKSSAVPMDVISQVILVG-AGT----------RVPKVQEK-------ITKVVG 395
L+ + + + V++ G G+ KVQ K + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LK 190
Query: 396 VELSKNLNTDEA--AALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKI 453
N N+ E L + D + ++ I++ +
Sbjct: 191 -----NCNSPETVLEMLQKLLYQID-------PNWTSRSDHSSNIKLRIH------SIQA 232
Query: 454 IKRMLFGPSNTYPQK-KILTFNKYVGDFNFNVSYASEIEHLNPE-QIAMLGTKQISKFDV 511
R L S Y +L NV A N +I +L T+ D
Sbjct: 233 ELRRLL-KSKPYENCLLVL-------L---NVQNAKAWNAFNLSCKI-LLTTRFKQVTDF 280
Query: 512 SGVSEAFGKHNEENAESKGIKAHFAMDES-GILSL-VNIELVVEKQEAAE-SPLSKLGNT 568
+S A H + S DE +L ++ +E +P
Sbjct: 281 --LSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------ 328
Query: 569 LTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 628
S+ + S D + K+VN + E S+ P +
Sbjct: 329 RLSIIAESIRDGLATW-------------DNWKHVN-CDKLTTIIESSLNV--LEPAEYR 372
Query: 629 K--------PKIVTVKEPI--------SASETRYGVSTLN-----EKQVEKSLSKLDSLN 667
K P + + S+ V+ L+ EKQ ++S + S+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 668 QIEHAKVRKEKAL--------NSLESLLFDAKSKLELEEYS--------SVAAPNESKTI 711
K+ E AL N ++ D L++Y E T+
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 712 VDKI--DEITNWLEE----DG--WNAEADVLENKLNEINSLVVPIWERH-REHQERPEAL 762
+ D +LE+ D WNA +L N L ++ ++ + ++ + E L
Sbjct: 493 FRMVFLD--FRFLEQKIRHDSTAWNASGSIL-NTLQQLK-----FYKPYICDNDPKYERL 544
Query: 763 KSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQN 822
+N + F + + N ++ +L + + L+ E + E++ K
Sbjct: 545 ------VNAILDF---LPKIEENLICSKYTDL---LRI----ALMAEDEAIFEEAHK--- 585
Query: 823 QLKK 826
Q+++
Sbjct: 586 QVQR 589
Score = 61.0 bits (147), Expect = 2e-09
Identities = 71/440 (16%), Positives = 137/440 (31%), Gaps = 120/440 (27%)
Query: 479 DFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMD 538
DF E ++ + +++ + FD V + K E I
Sbjct: 8 DFETG-----EHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMS-KDA 60
Query: 539 ESGILSLVNIELVVEKQEAAESPLSKLGNTLTS----LFSRSKTDENEKPINEA--VDEG 592
SG L L ++ KQE + L L S KT++ + + +++
Sbjct: 61 VSGTLRL--FWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 593 NKTAEEPSK----NVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYG- 647
++ + NV+ + + ++ A + K V + G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLK-----LRQALLE---LRPAKNVLI----------DGV 158
Query: 648 ---------VSTLNEKQVEKSLSKLDSLNQIEHAKVRK----EKALNSLESLLFDAKSKL 694
+ +V+ + +I ++ E L L+ LL+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 695 ELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVV--PIWERH 752
+ + S I +I I L +L++K E N L+V +
Sbjct: 214 T-------SRSDHSSNIKLRIHSIQAELR--------RLLKSKPYE-NCLLVLLNVQN-- 255
Query: 753 REHQERPEALKSLN---------------NALNVSVTFYNSIKNLSLNTNETEDLNLFSD 797
+A + N + L+ + T + S+ + S+ E +L
Sbjct: 256 ------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL- 308
Query: 798 IELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR-ALEREVRYLE-NKS 855
K LD + + ++ ++P L+I I E IR L + N
Sbjct: 309 ---KYLDC----------RPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCD 353
Query: 856 KLWMA---SLNKKKESTSKK 872
KL SLN + + +K
Sbjct: 354 KLTTIIESSLNVLEPAEYRK 373
Score = 49.9 bits (118), Expect = 4e-06
Identities = 56/322 (17%), Positives = 101/322 (31%), Gaps = 80/322 (24%)
Query: 2 KISLVT---------LCSSVVLLLTLFEHSYGIAVM-SVDLGSEWMKVAI------VSPG 45
KI L+T L ++ ++L HS + L +++ V
Sbjct: 267 KI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 46 VPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTRF----PSNSYGYFLDL--LG 97
P +++ ES R K D II + P+ F L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 98 KSIDSP--VVQLFKSRFPYYD---IVADEERGTIVFKTNDNELY-----------HVEEL 141
S P ++ L D +V + ++V K +E
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 142 VAMLLHKA--REYASVSAGQVINEAVIIVPGYF-NQIERQSMLKAGELAGLKVLQLMNDY 198
A LH++ Y + + YF + I LK E + M +
Sbjct: 443 YA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHP-----ERMTLF 493
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-YQVVKTKERGFVETHPQVSV 257
V L++ ++K + +D AW+ + SI++ Q +K + + P+
Sbjct: 494 RMVFLDFRFLEQK----------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--- 540
Query: 258 LGVGYDRTLGGLEMQIRLRDFL 279
Y+R + + DFL
Sbjct: 541 ----YERLVNAIL------DFL 552
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 6e-11
Identities = 47/280 (16%), Positives = 82/280 (29%), Gaps = 101/280 (36%)
Query: 268 GLEMQIRLRDFLGKK-FNEMKKTTKD---------VFENPRAVAKLFK-EAGR------L 310
G+ M + + +N KD V NP + F E G+
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 311 KNVLSANNEHFAQIEGLIDEIDFK-----------------------LLVTRAEFEAL-N 346
+ + + E + EI+ L+ +A FE L +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 347 EDLFDR--------VG-Y----------PVEQALK---------SSAVPMD--------- 369
+ L +G Y +E ++ AVP D
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 370 ---VISQVILVGAGTRVPKVQEKITKVVG--VELSKNLNTDE-----AAALGAVYKAADL 419
+V + + V E++ K G VE+ N N + A L A+ ++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NYNVENQQYVAAGDLRALDTVTNV 1868
Query: 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLF 459
K++K I DI+ + E ++ LF
Sbjct: 1869 LNFIKLQK-I--DIIELQKSLSLEE---------VEGHLF 1896
Score = 65.1 bits (158), Expect = 1e-10
Identities = 60/291 (20%), Positives = 109/291 (37%), Gaps = 78/291 (26%)
Query: 395 GVELSKNLNTDEAAALGAVYKAADLST----GFKVKKFITKDIVL-YPIQVEFERESESG 449
G++L T +AA V+ AD GF + DIV+ P+ + E G
Sbjct: 1632 GMDL---YKTSKAAQ--DVWNRADNHFKDTYGFSIL-----DIVINNPVNLTIHFGGEKG 1681
Query: 450 DTKIIK----RMLF--GPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLN-PE--QIAM 500
K I+ M+F +KI K + + + + ++ SE L+ + Q A+
Sbjct: 1682 --KRIRENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 501 LGTKQISKFDVSGVSEAFGKHNEENAESKGIK---AHFA---MDE-------SGILSLVN 547
+ + F E+ +SKG+ A FA + E + ++S+ +
Sbjct: 1737 T-LMEKAAF--------------EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 548 -IELVVE----KQEAAESPLSKLGNTLTSLF----SRSKTDENEKPINEAVDE-GNKTAE 597
+E+V Q A P +LG + + R +++ + V+ G +T
Sbjct: 1782 LVEVVFYRGMTMQVAV--PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 598 --EPSKNVNSTESQQQ---SAE-ESVKNATQTPDADKKPKIVTVKEPISAS 642
E N N QQ + + ++ T + K KI ++ S S
Sbjct: 1840 LVEIV-NYNV--ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 59.3 bits (143), Expect = 6e-09
Identities = 111/683 (16%), Positives = 194/683 (28%), Gaps = 261/683 (38%)
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P+ S+ QL + +F T F D+E ELV
Sbjct: 23 PTASFFIAS------------QL-QEQF-----NKILPEPTEGF-AADDEPTTPAELVGK 63
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
L GY + + S K G+ +VL L L
Sbjct: 64 FL-----------------------GYVSSLVEPS--KVGQFD--QVLNL-------CLT 89
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT-------KERGFVETHPQVSV 257
F+ + E N +H + + + T + + +++K +R F + S
Sbjct: 90 E--FEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN--SA 144
Query: 258 L----GVGYDRT---LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRA-VAKLFKEAGR 309
L G G + GG Q D+ F E+ +D+++ V L K +
Sbjct: 145 LFRAVGEGNAQLVAIFGG---QGNTDDY----FEEL----RDLYQTYHVLVGDLIKFSAE 193
Query: 310 LKNVLSANNEHFAQI--EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV- 366
+ L ++ +GL + + + P + L S +
Sbjct: 194 TLSELIRTTLDAEKVFTQGL----NILEWLENPS---------NT---PDKDYLLSIPIS 237
Query: 367 -PMDVISQ-----VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
P+ + Q V G +++ + G S+ L T A A+ D
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVT--AVAIA----ETD-- 287
Query: 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLF--G-------PSNTYPQKKIL 471
+ + F K I +LF G P+ + P
Sbjct: 288 ---------SWE--------SFFVSVR----KAI-TVLFFIGVRCYEAYPNTSLPPS--- 322
Query: 472 TFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVS-EAFGKH-NEENAESK 529
+ + E P ML +S ++ E + N+ N
Sbjct: 323 -----------ILEDSLENNEGVPS--PMLS--------ISNLTQEQVQDYVNKTN---- 357
Query: 530 GIKAHFAMDESGILSLVN--IELVVEKQEAAESPLS--KLGNTLTSLFSRSKTDENEKPI 585
+H + +SLVN LVV + P S L TL + S D
Sbjct: 358 ---SHLPAGKQVEISLVNGAKNLVV-----SGPPQSLYGLNLTLRKAKAPSGLD------ 403
Query: 586 NEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISA---S 642
QS + P +++K K P+++ S
Sbjct: 404 -------------------------QS---------RIPFSERKLKFSNRFLPVASPFHS 429
Query: 643 ETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESL---LFDAKSKLELEEY 699
L + + I V+ + N+ + + ++D +L
Sbjct: 430 H--L-------------LV--PASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSDLRVL 471
Query: 700 SSVAAPNESKTIVDKIDEIT-NW 721
S + IVD I + W
Sbjct: 472 SGSISER----IVDCIIRLPVKW 490
Score = 56.6 bits (136), Expect = 4e-08
Identities = 106/613 (17%), Positives = 200/613 (32%), Gaps = 208/613 (33%)
Query: 226 MGAWSTTVSIVSYQVVKT---------------KERGFVETHPQVSVLGVGYDRTLGGLE 270
M A+ST +S+ ++ +E+ F + P+ + D E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAE 59
Query: 271 MQIRLRDFLGKKF--NEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 328
+ + FLG + + ++ + F+ + + E L N+ H A L+
Sbjct: 60 LVGK---FLG--YVSSLVEPSKVGQFD--QVLNLCLTEFEN--CYLEGNDIH-ALAAKLL 109
Query: 329 DEIDFKLL----VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 384
E D L+ + + A P ++ S+ L A
Sbjct: 110 QENDTTLVKTKELIKNYITARIM-----AKRPFDKKSNSA-----------LFRA----- 148
Query: 385 KVQEKITKVV------GVELSKNLNT--DEAAALGAVYKAADLSTGFKVKKFITK-DIVL 435
V E ++V G N + +E L Y V I L
Sbjct: 149 -VGEGNAQLVAIFGGQG-----NTDDYFEELRDLYQTYHVL-------VGDLIKFSAETL 195
Query: 436 YPI---QVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIE 491
+ ++ E+ G + I L PSNT P K L + +S
Sbjct: 196 SELIRTTLDAEKVFTQGLN---ILEWLENPSNT-PDKDYLL---SIP-----ISC----- 238
Query: 492 HLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEE-NAESKGIKAHFAMDESGILSLVNIEL 550
P ++G Q++ + V ++ G E + KG H G+++ V
Sbjct: 239 ---P----LIGVIQLAHYVV--TAKLLGFTPGELRSYLKGATGHSQ----GLVTAV---- 281
Query: 551 VVEKQEAAESPLSKLGNTLTSLF---SRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTE 607
+ + ++ ES + +T LF R EA P+ ++ +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCY---------EAY---------PNTSLPPSI 323
Query: 608 SQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK----L 663
+ +S++N P P+ + +S L ++QV+ ++K L
Sbjct: 324 LE-----DSLENNEGVPS------------PMLS------ISNLTQEQVQDYVNKTNSHL 360
Query: 664 DSLNQIE----------------------HAKVRKEKALNSLES--LLFDAKSKLELE-E 698
+ Q+E + +RK KA + L+ + F + KL+
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNR 419
Query: 699 YSSVAAPNESKTIVDKIDEITNWLEEDG--WNAE------------ADVLENKLNEINSL 744
+ VA+P S +V D I L ++ +NA+ +D+ + +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 745 V-----VPI-WER 751
V +P+ WE
Sbjct: 480 VDCIIRLPVKWET 492
Score = 50.8 bits (121), Expect = 2e-06
Identities = 93/534 (17%), Positives = 154/534 (28%), Gaps = 203/534 (38%)
Query: 13 VLLLTL--FEHSY--G------IAVMSVDLGSEWMKV---------AIVSPGVPMEI--- 50
VL L L FE+ Y G A + + + +K A + P +
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 51 -ALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFK 109
AL + LVA FG Q G N+ YF +L L++
Sbjct: 143 SALFRAVGEGNAQLVA------IFG--GQ--G-----NTDDYFEEL---------RDLYQ 178
Query: 110 SRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVIN-----EA 164
+ Y+ +V D + K + L EL+ L + + Q +N E
Sbjct: 179 T---YHVLVGD------LIKFSAETL---SELIRTTLDAEKVF-----TQGLNILEWLEN 221
Query: 165 VIIVPG--YFNQIERQSMLKAGELAGLKVLQLMNDYTAVA----LNYGIFKR-------- 210
P Y I S L G+ +QL + Y A G +
Sbjct: 222 PSNTPDKDYLLSIPI-SC----PLIGV--IQLAH-YVVTAKLLGFTPGELRSYLKGATGH 273
Query: 211 ----------------KDFNE--TNPVHVMFYDMGAWST----TVSIVSYQVVKTKERGF 248
+ F + V+F+ +G S+ + + E
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 249 VETHPQVSVLGV------------------------------------GYDRTLGGLEMQ 272
P +S+ + G ++L GL +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 273 IR-LRDFLGK-----KFNEMKKTTKDVFENPRAV---AKLFKEAGRLKNVLSANNEHFAQ 323
+R + G F+E K + F P A + L L N+ +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASPFHSHL------LVPASDLINKDLVK 445
Query: 324 IEGLIDEIDFKLLV--T------RAEFEALNEDLFDRV-GYPV--EQALKSSAV------ 366
+ D ++ V T R +++E + D + PV E + A
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 367 P-----MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415
P + V++ G G RV +V L N + D G +K
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRV---------IVAGTLDINPDDD----YG--FK 544
Score = 38.5 bits (89), Expect = 0.011
Identities = 65/315 (20%), Positives = 107/315 (33%), Gaps = 119/315 (37%)
Query: 532 KAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK---TDEN-EKPINE 587
HF D G S+++I V +P LT F K EN I E
Sbjct: 1650 DNHF-KDTYGF-SILDI---VI-----NNP-----VNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 588 AVDEGNKTAEEPSKNVN-STESQQQSAEESVKNATQ-TPDADKKPKIVTVKEPISASETR 645
+ +G E+ K +N + S +E+ + +ATQ T +P + + +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-----QPALTLM----EKAAFE 1745
Query: 646 YGVSTLNEKQVEK--------SL---SKLDSLNQIEHAKVRKEKALNSLES---LLF--- 688
L K + SL + L SL A V + S+ES ++F
Sbjct: 1746 D----LKSKGLIPADATFAGHSLGEYAALASL-----ADV-----M-SIESLVEVVFYRG 1790
Query: 689 ----DAKSKLEL--EEYSSVAA-PNE---------SKTIVDKIDEITNWLEEDGWNAEAD 732
A + EL Y +A P + +V+++ + T W
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW----------- 1839
Query: 733 VLE--NKLNEINSLVV---PIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL----- 782
++E N N N V + AL ++ N LN + ++ +
Sbjct: 1840 LVEIVN-YNVENQQYVAAGDL-----------RALDTVTNVLN-----FIKLQKIDIIEL 1882
Query: 783 --SLNTNETEDLNLF 795
SL+ E E +LF
Sbjct: 1883 QKSLSLEEVEG-HLF 1896
Score = 37.3 bits (86), Expect = 0.029
Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 79/197 (40%)
Query: 39 VAIVSPGVPMEIALNK--ESKRKTPTLVAF--HK-GE----------RTFGEDAQIIGTR 83
A+ ME A + +SK P F H GE + E
Sbjct: 1734 PALTL----MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-ESL------ 1782
Query: 84 FPSNSYGYFLDLL---GKSIDS--PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV 138
++++ G ++ P +L +S Y ++A G + + L
Sbjct: 1783 ---------VEVVFYRGMTMQVAVPRDELGRSN---YGMIAINP-GRVAASFSQEAL--- 1826
Query: 139 EELVAMLLHKAREYASV----SAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQL 194
+ +V + + + Q V AG+L L +
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQY---VA----------------AGDLRALDTVTN 1867
Query: 195 MNDYTAVALNYGIFKRK 211
+ LN+ K +
Sbjct: 1868 V-------LNF--IKLQ 1875
Score = 35.4 bits (81), Expect = 0.13
Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 63/251 (25%)
Query: 639 ISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEE 698
+ A TR TL+ +E L L A +E+ L E
Sbjct: 1 MDAYSTRP--LTLSHGSLEHVL--LVPTASFFIASQLQEQFNKILP------------EP 44
Query: 699 YSSVAAPNESKTIVD---K-IDEITNWLEEDGWNAEADVLENKL----------NEINSL 744
AA +E T + K + +++ +E VL L N+I++L
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 745 VVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLD 804
+ + + +L + + + ++ + LF + +
Sbjct: 105 AAKLLQEND---------TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA- 154
Query: 805 TLI-------NETKVWKEKSEKEQNQLKK----SDPIVLTIRSIVEKIRA-LEREVRYLE 852
L+ N ++E L+ +V +++ L +R
Sbjct: 155 QLVAIFGGQGNTDDYFEE--------LRDLYQTYHVLV---GDLIKFSAETLSELIRTTL 203
Query: 853 NKSKLWMASLN 863
+ K++ LN
Sbjct: 204 DAEKVFTQGLN 214
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 52.6 bits (126), Expect = 2e-08
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 670 EHAKVRKE-KALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN 728
H+ + LES F+ K +E E+ +P + K I DK DEI WL+ +
Sbjct: 9 HHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQ-T 67
Query: 729 AEADVLENKLNEINSLVVPI 748
AE + E++ ++ L PI
Sbjct: 68 AEKEEFEHQQKDLEGLANPI 87
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 52.2 bits (125), Expect = 2e-08
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 675 RKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734
+ A N+LES F+ KS +E E + + K ++DK E+ +WL+ + AE D
Sbjct: 6 ERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANT-LAEKDEF 64
Query: 735 ENKLNEINSLVVPI 748
E+K E+ + PI
Sbjct: 65 EHKRKELEQVCNPI 78
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 51.9 bits (124), Expect = 2e-08
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 679 ALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 738
+ LES F+ K+ +E E+ + + I+DK +EI +WL+++ AE + E++
Sbjct: 5 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQT-AEKEEFEHQQ 63
Query: 739 NEINSLVVPI 748
E+ + PI
Sbjct: 64 KELEKVCNPI 73
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 44.8 bits (106), Expect = 1e-04
Identities = 48/258 (18%), Positives = 100/258 (38%), Gaps = 21/258 (8%)
Query: 648 VSTLNEKQVEKSL--SKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAP 705
EK + + ++ + + E +VR LE +L + ++++E EE S
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ 947
Query: 706 NESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSL 765
E K + ++ ++ LEE+ A L+ + + + + + +++ L
Sbjct: 948 AEKKKMQQQMLDLEEQLEEE--EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Query: 766 NNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLK 825
L + +L+ N E E+ +++I+E +V +K EK + +L+
Sbjct: 1006 RKLLE------ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 826 KSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSK-----KKEDKPKNK 880
K R + + L ++ L+ + A L KK+E + E KN
Sbjct: 1060 K------IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Query: 881 DSDKTKPSETEQSKPEEQ 898
K + E+ S +E
Sbjct: 1114 ALKKIRELESHISDLQED 1131
Score = 35.2 bits (81), Expect = 0.13
Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 5/220 (2%)
Query: 553 EKQEAAESPLSKLGNTLTSLFSRSKTDENE-KPINEAVDEGNKTAEEPSKNVNSTESQQQ 611
E+ E E+ KL + + K E++ + + ++ K + + V+ +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 612 SAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKL-DSLNQIE 670
EE KN T+ + + I ++ + E ++++E S L + + +++
Sbjct: 1022 EEEEKAKNLTKLKNKHES-MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 671 HAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 730
+ L E L A ++LE E A + + + I ++ LE + A
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE--KAA 1138
Query: 731 ADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALN 770
+ E + +++ + + + + + L +
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY 1178
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 43.7 bits (104), Expect = 1e-04
Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 81/275 (29%)
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
++V L K G + +A +P ++ AGL+++ L+++
Sbjct: 74 IQIVRELKAKVERLL----GSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEP 129
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY-QVVKTKERGFVETHPQVSV 257
A A GI + + D+G +T ++++ ++ T
Sbjct: 130 VAAARALGI----NDG-------IVVDIGGGTTGIAVIEKGKITATF------------- 165
Query: 258 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 317
D GG + + L F+EA +K S +
Sbjct: 166 -----DEPTGGTHLSLVLAGSYKIP---------------------FEEAETIKKDFSRH 199
Query: 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
E + + +++ V++ +K+ D V +V
Sbjct: 200 REIMRVV----------------------RPVIEKMALIVKEVIKN----YDQTLPVYVV 233
Query: 378 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
G + E+ ++ +G E+ ++ LG
Sbjct: 234 GGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGI 268
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 39.8 bits (92), Expect = 0.003
Identities = 44/401 (10%), Positives = 108/401 (26%), Gaps = 108/401 (26%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 89
+D GS +K+ + ++ + +F + D ++ Y
Sbjct: 5 IDDGSTNIKLQWQES---------DGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQY 55
Query: 90 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 149
+ D V TN + ++ + +H A
Sbjct: 56 SF----------------------------DPISPDAVVTTNIA--WQYSDVNVVAVHHA 85
Query: 150 REYASVSAGQVINEAVIIVP-----------------GYFNQIERQSMLKAGELAGLKVL 192
+ + +V + V +P ++ L G+ +K +
Sbjct: 86 LLTSGLPVSEV--DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDV 143
Query: 193 QLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETH 252
++M + + +E + + + D+G + +S V ++ +
Sbjct: 144 KVMPESIPAGYEVLQ----ELDELDSLLI--IDLGGTTLDISQVMGKLSGISKIYG---- 193
Query: 253 PQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKN 312
D +LG + ++D L + D
Sbjct: 194 ----------DSSLGVSLVTSAVKDALSLARTKGSSYLAD-------------------- 223
Query: 313 VLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 372
I D K + ++ + + +EQ + ++ +
Sbjct: 224 ---------DIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYT 274
Query: 373 QVILVGAGTR-VPKVQEKITKVVGVELSKNLNTDEAAALGA 412
V+++G G + +K T++ K N+ G
Sbjct: 275 HVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGM 315
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 36.5 bits (83), Expect = 0.048
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 864 KKKESTSKKKEDKPKNKDS-DKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPE 922
E S + E D ++ + + + + E A E +P + + ET
Sbjct: 32 ANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAA 91
Query: 923 DKTKTE 928
K E
Sbjct: 92 SAAKPE 97
Score = 36.5 bits (83), Expect = 0.050
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 864 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPED 923
+ +E+ + S +++ S E K E + L + ET +P
Sbjct: 20 QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79
Query: 924 KTKTE 928
Sbjct: 80 NEAAT 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.11
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 815 EKSE--KEQNQLKK----SDPIVLTIRSIVE 839
EK K Q LK S P L I++ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAP-ALAIKATME 47
Score = 30.7 bits (68), Expect = 1.1
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 32/53 (60%)
Query: 653 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAP 705
EKQ +L KL + SL KL Y+ +AP
Sbjct: 18 EKQ---ALKKLQA----------------SL---------KL----YADDSAP 38
Score = 28.8 bits (63), Expect = 5.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 757 ERPEALKSLNNALNVSVTFY--NSIKNLSLN-TNE 788
E+ +ALK L +L + Y +S L++ T E
Sbjct: 18 EK-QALKKLQASLKL----YADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.11
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 804 DTLINET---KVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMA 860
D L E + W+E+ K L++ D S V + E+ + LE W
Sbjct: 78 DRLTQEPESIRKWREEQRKR---LQELD-----AASKVMEQEWREKAKKDLEE----WNQ 125
Query: 861 SLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEE 897
+++ E KNK +++ Q +
Sbjct: 126 RQSEQVE----------KNKINNRIADKAFYQQPDAD 152
Score = 31.7 bits (71), Expect = 0.73
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 660 LSKLDSLNQIEHAKVRK--EKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDE 717
+++ D L Q E +RK E+ L+ L DA SK+ +E+ A +
Sbjct: 74 IAQADRLTQ-EPESIRKWREEQRKRLQEL--DAASKVMEQEWREKAK-----------KD 119
Query: 718 ITNWLEEDGWNAEADVLENKLNE 740
+ W + E + + N++ +
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIAD 142
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 33.9 bits (78), Expect = 0.24
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 359 QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418
+ ++S I++++L+G G + ++ ++G+++++ TDE A+GA +AA
Sbjct: 416 ELIRSLGAS---ITRILLIGGGAKSEAIRTLAPSILGMDVTR-PATDEYVAIGAARQAAW 471
Query: 419 LSTGFK----VKKFITKDIVLYPIQVEFER 444
+ +G + I P + +E
Sbjct: 472 VLSGETEPPAWQLTIDGVETGEPTEAVYEA 501
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 32.4 bits (73), Expect = 0.35
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 810 TKVWKEKSEKEQNQL---KKSDPIVLTIRSI-------VEKIRALEREVRYLENKSKLWM 859
T + +K + KK V R+I + + + L+ + E + +
Sbjct: 54 TIARRRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRE 113
Query: 860 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAG 901
K + K+ + K + KD K +ET+++K G
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKG 155
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 32.7 bits (74), Expect = 0.55
Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 19/125 (15%)
Query: 109 KSRFPYYDIVADE-ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVII 167
+R + ++ + + + E++ + S + + VI
Sbjct: 40 SARMGFVREGKNDSVHACVTRYSMKR--KDITEIIEFFNEIIELMPA-SVMKRVKAGVIN 96
Query: 168 VPGYFN-------------QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN 214
VPG KA L ++ND A
Sbjct: 97 VPGPVTGGAVGGPFNNLKGIARLSDYPKA--LFPPGHSAILNDLEAGGFGVLAVSDAHVF 154
Query: 215 ETNPV 219
Sbjct: 155 SEYFG 159
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 32.3 bits (73), Expect = 0.83
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 4/133 (3%)
Query: 638 PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELE 697
P ++ T Y V + KQ+ + + S+ + + +N L++ + + + LE
Sbjct: 68 PANSERTPYKVRPVAIKQLSEREELIQSVLAQVAEQFSRAFKINELKAEVANHLAVLEKR 127
Query: 698 EYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV----VPIWERHR 753
E + I ++ L + L+ L VP + ++
Sbjct: 128 VELEGLKVVEIEKCKSDIKKMREELAARSSRTNCPCKYSFLDNHKKLTPRRDVPTYPKYL 187
Query: 754 EHQERPEALKSLN 766
E EAL+
Sbjct: 188 LSPETIEALRKPT 200
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 31.7 bits (71), Expect = 0.91
Identities = 8/54 (14%), Positives = 21/54 (38%)
Query: 859 MASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSP 912
+++L + + + +P + + + KP+ Q ++P KP
Sbjct: 49 VSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 32.0 bits (73), Expect = 1.0
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 403 NTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPS 462
N DE + +Y A S + K I+++ + +++ ++ G + +
Sbjct: 324 NKDEGSFF-LLYGAPGFSKDSESK--ISREDFMSGVKLSVPHANDLGLDAVTLQYTDWMD 380
Query: 463 NTYPQKKILTFNKYVGDFNFNV 484
+ K + VGD N
Sbjct: 381 DNNGIKNRDGLDDIVGDHNVIC 402
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.4 bits (68), Expect = 1.3
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 810 TKVWKEKSEKEQNQL---KKSDPIVLTIRSIV-------EKIRALEREVRYLENKSKLWM 859
T +++ K +K Q++ K++ V R+I R + EVR + + +
Sbjct: 52 TVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRA 111
Query: 860 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQP 899
A KK + SKK + + + P
Sbjct: 112 AKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 1.8
Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 808 NETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKE 867
E K +++ ++ ++LKK + + +K ++L+ EV + + ++ +
Sbjct: 355 AELKEAEKELHEKFDRLKKL--HQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQ 412
Query: 868 STSKKKEDKPKNK 880
+ + + K K
Sbjct: 413 AGGSQTLKRDKEK 425
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 31.0 bits (70), Expect = 1.9
Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 44/222 (19%)
Query: 178 QSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237
+L+A AGL + L A ++ + + D+GA ST++ ++
Sbjct: 154 AGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRV----FLVLDIGAESTSLVLLR 209
Query: 238 YQVVKTKERGFVETHPQVSVLGVGYDRTL--GGLEMQIRLRDFLGKKFNEMKKTTKDVFE 295
R L G + +
Sbjct: 210 GDKPL-------------------AVRVLTLSGKDFTEAIARSFNLDLLA---------- 240
Query: 296 NPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGY 355
A+ K + + + + E + + + + +L +
Sbjct: 241 -----AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIY--DAIRPVLVELTQELRR 293
Query: 356 PVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE 397
+E L+G G+++ + +T +GV
Sbjct: 294 SLEFFRIQL--EEASPEVGYLLGGGSKLRGLASLLTDTLGVN 333
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase,
hydrolase; NMR {Methanosarcina mazei}
Length = 101
Score = 29.0 bits (65), Expect = 2.2
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 304 FKEAGRLKNVLSANN--EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 361
F+ AG + V + + + ++++ +LV ++ D + + + L
Sbjct: 15 FRLAG-ISKVYETPDIPATESAVRSVLEDKSVGILV-------MHNDDIGNLPEVLRKNL 66
Query: 362 KSSAVPMDVISQVILVGAGTR-VPKVQEKITKVVGVELSK 400
S P V+ +G ++EKI + VGV+L K
Sbjct: 67 NESVQPT-----VVALGGSGSGSTSLREKIKQAVGVDLWK 101
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 30.4 bits (68), Expect = 2.6
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 850 YLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPK 909
++ + ++ + + + + P N D+ P P P P
Sbjct: 197 FINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNN-PDNPNNPDEPNNPDNPNNPDNPD 255
Query: 910 PSPSPVDETTTPE 922
+ + P+
Sbjct: 256 NGDNN--NSDNPD 266
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 29.9 bits (68), Expect = 4.6
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 359 QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418
+ + + V L+G G R ++ + + G +L D ALGA A
Sbjct: 378 DVVHACGIK---PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQI 434
Query: 419 LSTGFK----VKKFITKDIVLYPIQVEFER 444
+ K + + + P +
Sbjct: 435 AANPEKSLIELLPQLPLEQSHLPDAQRYAA 464
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.8 bits (66), Expect = 4.7
Identities = 8/59 (13%), Positives = 21/59 (35%)
Query: 864 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPE 922
+ K K K++K N++ K + E E+ + + + + + +
Sbjct: 820 RAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYK 878
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 29.6 bits (67), Expect = 4.8
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 403 NTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPS 462
N DE A VY A S IT+ +++ F SE G I+
Sbjct: 322 NKDEGTAF-LVYGAPGFSKDNN--SIITRKEFQEGLKIFFPGVSEFGKESILFHYTDWVD 378
Query: 463 NTYPQKKILTFNKYVGDFNFNV 484
+ P+ VGD+NF
Sbjct: 379 DQRPENYREALGDVVGDYNFIC 400
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 29.5 bits (67), Expect = 5.3
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE-AGRLKNVLSANNEHFAQIE 325
G E+ RL F +++ T V + KE ++++ + +E
Sbjct: 62 GKTEIARRLAKLANAPFIKVEATKFT------EVGYVGKEVDSIIRDLTDSAGGAIDAVE 115
Query: 326 G----LIDEID 332
IDEID
Sbjct: 116 QNGIVFIDEID 126
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix
bundle, actin-binding, ATP-binding, calmodulin-binding,
coiled coil; 2.70A {Sus scrofa}
Length = 148
Score = 28.5 bits (63), Expect = 5.8
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 799 ELKSLDTLINETKVWKEKSEKEQNQLKKS-DPIVLTIRSIVEKIRALEREVRYLENKSKL 857
L + +++ K K++ K+ L+ S D ++ I+S + +++E L S +
Sbjct: 80 RLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKIKSTMMTREQIQKEYDALVKSSAV 139
Query: 858 WMASLNKKK 866
+++L KKK
Sbjct: 140 LLSALQKKK 148
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 29.7 bits (67), Expect = 6.2
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 27/149 (18%)
Query: 642 SETRYGVSTLNEKQ-----VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL 696
+E + +S E + ++L KL ++ ++ ++ESL +
Sbjct: 85 AEQYHSISPKGEAASNPEVIARTLRKL-----KNQPELSEDTIKKAVESLSLEL------ 133
Query: 697 EEYSSV--AAPNES--KTIVDKIDEITNWLEE-DGWNAEADVLENKLNEINSLVVPIWER 751
V A P E +T++ K+ E+ L++ D + + + L+ W
Sbjct: 134 -----VLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHT 188
Query: 752 HREHQERPEALKSLNNALNV-SVTFYNSI 779
+ RP + V + + +
Sbjct: 189 DEIRKLRPSPVDEAKWGFAVVENSLWQGV 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.129 0.348
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,213,189
Number of extensions: 815561
Number of successful extensions: 1902
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1843
Number of HSP's successfully gapped: 99
Length of query: 929
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 827
Effective length of database: 3,853,851
Effective search space: 3187134777
Effective search space used: 3187134777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.2 bits)