RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7891
(929 letters)
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 152 bits (384), Expect = 7e-43
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 1/184 (0%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
+ +DLGS + V + G EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
N+ L+G+ D VVQ +P+ + V + + ++ EE+ +M+L
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 207 IFKR 210
+ K+
Sbjct: 182 LDKK 185
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 151 bits (384), Expect = 1e-42
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 220 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 279
+ YD+G + +SI+ V + VL D LGG + RL ++L
Sbjct: 4 TIAVYDLGGGTFDISIIEIDEVDGE--------KTFEVLATNGDTHLGGEDFDSRLINYL 55
Query: 280 GKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEI----DFKL 335
++F K D+ +P A+ +L + A + K LS+ + + + + +
Sbjct: 56 VEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNI 113
Query: 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395
VTRA+ E+L EDL +R ++ AL+ + + + I VILVG TR+P VQ+K+ + G
Sbjct: 114 KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFG 173
Query: 396 VELSKNLNTDEAAALGAVYKAADLS 420
E K++N DEA A+GA + L+
Sbjct: 174 KEPRKDVNPDEAVAIGAAVQGGVLT 198
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 142 bits (360), Expect = 2e-39
Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 15/202 (7%)
Query: 220 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 279
+V+ +D+G + VSI++ E G E V D LGG + R+ +
Sbjct: 6 NVLIFDLGGGTFDVSILTI------EDGIFE------VKSTAGDTHLGGEDFDNRMVNHF 53
Query: 280 GKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTR 339
+F +K KD+ EN RAV +L R K LS++ + +I+ L + IDF +TR
Sbjct: 54 IAEF--KRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 111
Query: 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV-GVEL 398
A FE LN DLF PVE+AL+ + + I ++LVG TR+PK+Q+ + G EL
Sbjct: 112 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 171
Query: 399 SKNLNTDEAAALGAVYKAADLS 420
+K++N DEA A GA +AA LS
Sbjct: 172 NKSINPDEAVAYGAAVQAAILS 193
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 141 bits (356), Expect = 5e-39
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ L+G+ VQ S P+ + + G + + ++ A +
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFK--IIAADNGDAWVEVKGQK-MAPPQISAEV 117
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL Y
Sbjct: 118 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 177
Query: 206 GIFK 209
G+ K
Sbjct: 178 GLDK 181
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 66.1 bits (160), Expect = 8e-13
Identities = 25/202 (12%), Positives = 57/202 (28%), Gaps = 27/202 (13%)
Query: 214 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQI 273
N P M D+G +T V+++S + ++ ++
Sbjct: 2 NVEEPSGNMVVDIGGGTTEVAVISLG-------------------SIVTWESIRIAGDEM 42
Query: 274 RLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDF 333
+ + E + + + E L +
Sbjct: 43 DEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPR 97
Query: 334 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPM---DVISQVILVGAGTRVPKVQEKI 390
KL + E + + V L+ + + + + L G G+ + + +
Sbjct: 98 KLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLL 157
Query: 391 TKVVGVELSKNLNTDEAAALGA 412
K G+ + ++ A A GA
Sbjct: 158 QKETGISVIRSEEPLTAVAKGA 179
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 58.6 bits (142), Expect = 2e-11
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 678 KALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737
+ + LES F+ K+ +E E+ + + I+DK +EI +WL+++ AE + E++
Sbjct: 1 RGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQ-TAEKEEFEHQ 59
Query: 738 LNEINSLVVPI 748
E+ + PI
Sbjct: 60 QKELEKVCNPI 70
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 53.6 bits (128), Expect = 4e-09
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 127 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 186
+ + + + ++L A VI VP +ER+++L AG
Sbjct: 58 AIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLE 117
Query: 187 AGLKVLQLMNDYTAVAL 203
AG + L+ + A A+
Sbjct: 118 AGASKVFLIEEPMAAAI 134
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 36.7 bits (84), Expect = 0.004
Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 50/208 (24%)
Query: 215 ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIR 274
E P + + D+G+ +T V ++ + V+ + + +G +
Sbjct: 2 EQQPGYGVVIDVGSRTTDVLTINLMDM-------------EPVVELSFSLQIGVGDAISA 48
Query: 275 LRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFK 334
L + K+ + + LS + G +
Sbjct: 49 LSRKIAKETGFVVPFDLA------------------QEALSHPVMFRQKQVGGPEVS--- 87
Query: 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK--VQEKITK 392
E L + + + + + D ++ +I VG G+ + +E
Sbjct: 88 ----GPILEDLANRIIENIRLNLRGEV-------DRVTSLIPVGGGSNLIGDRFEEIAPG 136
Query: 393 VVGVELSKNLNTDEAAALGAVYKAADLS 420
+ + + A ALG AA+ S
Sbjct: 137 TLVKIKPE--DLQFANALGY-RDAAERS 161
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 36.5 bits (84), Expect = 0.011
Identities = 41/276 (14%), Positives = 80/276 (28%), Gaps = 57/276 (20%)
Query: 165 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY 224
+ I+P F+ + ++A + L++D +
Sbjct: 22 LEIIPNEFDDTPTILSERISQVAAGVLRNLIDDNMKIGF--------------------- 60
Query: 225 DMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFN 284
+W ++S + + R L G + + + K
Sbjct: 61 ---SWGKSLSNLVDLIHSKSVRNV-----HFYPLAGGPSHIHAKYHVNTLIYEMSRKFHG 112
Query: 285 EMK----------KTTKDVFENPRAVAKLFKEAGRLKNVL----SANNEHFAQIEGLIDE 330
E K D R L L + +N+ Q ++ E
Sbjct: 113 ECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTE 172
Query: 331 IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV-----ISQVILVGAGTRVPK 385
DFK L + FD G V + L+ + + + I Q + V G
Sbjct: 173 DDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYG----- 227
Query: 386 VQEKITKVVGVELSKNLN---TDEAAALGAVYKAAD 418
K++ ++ V + +N TD+ L + + D
Sbjct: 228 -DTKVSSILSVLRANLVNHLITDKNTILKVLEEDGD 262
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 110
Score = 30.5 bits (68), Expect = 0.25
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 109 KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREY---ASVSAGQVINEAV 165
+R DI + E + D +E ++ + L + + ++ I
Sbjct: 13 NARLALCDIASGEISQAKTYSGLDYP--SLEAVIRVYLEEHKVEVKDGCIAIACPITGDW 70
Query: 166 IIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
+ + + M K G L+++ND+TAV++
Sbjct: 71 VAMTNHTWAFSIAEMKKN---LGFSHLEIINDFTAVSM 105
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 880
Score = 30.9 bits (69), Expect = 0.85
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 27/151 (17%)
Query: 642 SETRYGVSTLNEKQ-----VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL 696
+E + +S E + ++L KL ++ ++ ++ESL +
Sbjct: 82 AEQYHSISPKGEAASNPEVIARTLRKL-----KNQPELSEDTIKKAVESLSLEL------ 130
Query: 697 EEYSSV--AAPNESK--TIVDKIDEITNWLEE-DGWNAEADVLENKLNEINSLVVPIWER 751
V A P E T++ K+ E+ L++ D + + + L+ W
Sbjct: 131 -----VLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHT 185
Query: 752 HREHQERPEALKSLNNAL-NVSVTFYNSIKN 781
+ RP + V + + + N
Sbjct: 186 DEIRKLRPSPVDEAKWGFAVVENSLWQGVPN 216
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 27.4 bits (61), Expect = 2.9
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 651 LNEKQVEKSLSKLDSLNQIEHAKVRKEK--ALNSLESLLFDAKSKLELEEYSSVAAPNES 708
LNE +++K + D+ E + +E N + LL + ++E E ++
Sbjct: 1 LNEDEIQKMVR--DAEANAEADRKFEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDK 56
Query: 709 KTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWE 750
I + + L+ + + +E K+ E+ + + E
Sbjct: 57 TAIESALTALETALKGE----DKAAIEAKMQELAQVSQKLME 94
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6
[TaxId: 1422]}
Length = 371
Score = 29.0 bits (64), Expect = 2.9
Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINE 163
+V+ +K Y+D+V + + + + + + AR+Y + +N+
Sbjct: 135 IVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMND 194
Query: 164 AVIIVPGYFNQIER--QSMLKAG 184
V + + + + G
Sbjct: 195 YNTEVEPKRTALYNLVKQLKEEG 217
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 28.9 bits (63), Expect = 3.2
Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 8/151 (5%)
Query: 645 RYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAA 704
+ ++ ++ D+ + + A +L + L + S E E+ + A
Sbjct: 242 NLACVYYEQGLIDLAI---DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN-TA 297
Query: 705 PNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWER----HREHQERPE 760
T D ++ + N E G EA L K E+ ++ + E
Sbjct: 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETED 791
AL A+ +S TF ++ N+ E +D
Sbjct: 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
>d2b3wa1 d.336.1.1 (A:1-160) Hypothetical protein YbiA {Escherichia
coli [TaxId: 562]}
Length = 160
Score = 28.0 bits (62), Expect = 3.4
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 200 AVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLG 259
+ + RK++ E+ VM + A + + ++ T VE + G
Sbjct: 76 RMGRDRSKPLRKNW-ESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDAYWG 134
Query: 260 VGYDRT----LGGLEMQIR 274
G LG L M++R
Sbjct: 135 DGGHGKGKNRLGYLLMELR 153
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier
protein ThiS {Escherichia coli [TaxId: 562]}
Length = 65
Score = 25.4 bits (56), Expect = 7.3
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 189 LKVLQLMNDYTAVALNYGIFKRKDFNET 216
L+ L A+A+N I R+ + +
Sbjct: 21 LEQLDQRQAGAALAINQQIVPREQWAQH 48
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 277
Score = 27.4 bits (60), Expect = 9.1
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 411 GAVYKAADLSTGFKVK-KFITKDIVLYPIQVE-FERE 445
V+ A DL V K + D+ P F RE
Sbjct: 21 SEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRRE 57
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 26.0 bits (57), Expect = 9.5
Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 780 KNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVL--TIRSI 837
K ++L+ L D E++ L + E + + + K + + L +++
Sbjct: 21 KGVALDLEALLAL----DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKAL 76
Query: 838 VEKIRALEREVRYLENKSKLWMASL 862
E+ + LE +R E + + + +
Sbjct: 77 GEEAKRLEEALREKEARLEALLLQV 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.129 0.348
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,133,114
Number of extensions: 146909
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 34
Length of query: 929
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 835
Effective length of database: 1,116,976
Effective search space: 932674960
Effective search space used: 932674960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.0 bits)