BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7892
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 7/151 (4%)
Query: 89 SCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHE 147
S Y I+ YL+ EA ++ YL + T GN MR++L+DW+V+VQ F L E
Sbjct: 4 SEYVKDIYAYLRQLEAAQAVRPKYLLGREVT--GN----MRAILIDWLVQVQMKFRLLQE 57
Query: 148 TLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 207
T+Y+ V ++D ++ + LQL+G TA+F++SK+++ PP++ D ++ +TY+
Sbjct: 58 TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117
Query: 208 LKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
++ ME+K++ A+ F LG PL FLRR ++I
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRRASKI 148
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
Query: 91 YAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETL 149
Y I+ YL+ E E ++ YL + T GN MR++L+DW+V+VQ F L ET+
Sbjct: 4 YVKDIYAYLRQLEEEQAVRPKYLLGREVT--GN----MRAILIDWLVQVQMKFRLLQETM 57
Query: 150 YLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLK 209
Y+ V ++D ++ + LQL+G TA+F++SK+++ PP++ D ++ +TY+ ++
Sbjct: 58 YMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIR 117
Query: 210 DMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
ME+K++ A+ F LG PL FLRR ++I
Sbjct: 118 QMEMKILRALNFGLGRPLPLHFLRRASKI 146
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + + +I MR++LVDW+VEV E ++L +
Sbjct: 3 EVPDYQEDIHTYL--REMEVKCKPKVGYMK--RQPDITNSMRAILVDWLVEVGEEYKLQN 58
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TYS +
Sbjct: 59 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKK 118
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 119 QVLRMEHLVLKVLAFDLAAPTVNQFLTQY 147
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
Query: 95 IFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVK 154
I YL RE E + K + + + +I MR++LVDW+VEV E ++L +ETL+LAV
Sbjct: 8 IHTYL--REMEVKCKPKVGYMK--RQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVN 63
Query: 155 LVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIK 214
+D +L + R LQL+G A+ ++SKF++ PP++++ YI TYS + + ME
Sbjct: 64 YIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHL 123
Query: 215 LVTAIGFDLGIPLSYRFLRRY 235
++ + FDL P +FL +Y
Sbjct: 124 VLKVLAFDLAAPTVNQFLTQY 144
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 102 REAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLG 161
RE E + K + + + +I MR++LVDW+VEV E ++L +ETL+LAV +D +L
Sbjct: 13 REMEVKCKPKVGYMK--RQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLS 70
Query: 162 KVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGF 221
+ R LQL+G A+ ++SKF++ PP++++ YI TYS + + ME ++ + F
Sbjct: 71 SMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAF 130
Query: 222 DLGIPLSYRFLRRY 235
DL P +FL +Y
Sbjct: 131 DLAAPTVNQFLTQY 144
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLAFDLAAPTINQFLTQY 148
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLAFDLAAPTINQFLTQY 148
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLAFDLAAPTINQFLTQY 148
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLAFDLAAPTINQFLTQY 148
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 86 LQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELN 145
++V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L
Sbjct: 1 MEVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQ 56
Query: 146 HETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSI 205
+ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+
Sbjct: 57 NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTK 116
Query: 206 QDLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ + ME ++ + FDL P +FL +Y
Sbjct: 117 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQY 146
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLAFDLAAPTINQFLTQY 148
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLAFDLAAPTINQFLTQY 148
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 148
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 148
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 4 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 59
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 60 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 119
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 120 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 148
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 3 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 58
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 59 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 118
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 119 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 147
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 2 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 57
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 58 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 117
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 118 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 146
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 1 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 56
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 57 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 116
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 117 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 145
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNH 146
+V Y I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +
Sbjct: 7 EVPDYHEDIHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQN 62
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ +
Sbjct: 63 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 122
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
+ ME ++ + FDL P +FL +Y
Sbjct: 123 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 151
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 102 REAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLG 161
RE E + K + + ++ +I MR++LVDW+VEV E ++L +ETL+LAV +D +L
Sbjct: 13 REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLS 70
Query: 162 KVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGF 221
+ R LQL+G A+ ++SKF++ PP++++ YI TY+ + + ME ++ + F
Sbjct: 71 SMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTF 130
Query: 222 DLGIPLSYRFLRRY 235
DL P +FL +Y
Sbjct: 131 DLAAPTVNQFLTQY 144
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 85/141 (60%), Gaps = 4/141 (2%)
Query: 95 IFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVK 154
I YL RE E + K + + ++ +I MR++LVDW+VEV E ++L +ETL+LAV
Sbjct: 6 IHTYL--REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVN 61
Query: 155 LVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIK 214
+D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ + + ME
Sbjct: 62 YIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHL 121
Query: 215 LVTAIGFDLGIPLSYRFLRRY 235
++ + FDL P +FL +Y
Sbjct: 122 VLKVLTFDLAAPTVNQFLTQY 142
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 102 REAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLG 161
RE E + K + + ++ +I MR++LVDW+VEV E ++L +ETL+LAV +D +L
Sbjct: 13 REMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLS 70
Query: 162 KVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGF 221
+ R LQL+G A+ ++SKF++ PP++++ YI TY+ + + ME ++ + F
Sbjct: 71 SMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTF 130
Query: 222 DLGIPLSYRFLRRY 235
DL P +FL +Y
Sbjct: 131 DLAAPTVNQFLTQY 144
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 109 KDYLPFQSSTEKGNI-NAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLG---KVV 164
K YL Q E+ + +MR++L+DW++EV E ++L+ ET YLA D Y+ VV
Sbjct: 30 KTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV 89
Query: 165 CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLG 224
+ LQL+G +++F+++K ++ PP+L Y+ S ++ ME+ ++ A+ + L
Sbjct: 90 --KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 147
Query: 225 IPLSYRFLRRYARIRY 240
+L Y ++ Y
Sbjct: 148 PLTIVSWLNVYMQVAY 163
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%)
Query: 123 INAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSS 182
I MR +L WM+EV E E LA+ +D YL V + LQLLGA + ++S
Sbjct: 66 IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLAS 125
Query: 183 KFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFL 232
K + P + L H S + L+D E+ ++ + +DL +++ FL
Sbjct: 126 KLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFL 175
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 16/158 (10%)
Query: 77 FDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLP-FQSSTE-KGNINAEMRSVLVDW 134
D T +DP + LK RE LP F S E + + + R++L+ W
Sbjct: 13 IDSTTMKDP--------RVLNNLKLREL------LLPKFTSLWEIQTEVTVDNRTILLTW 58
Query: 135 MVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSD 194
M + E+FEL+ L+V ++D YL K ++ LQ +GA + + SK P +S
Sbjct: 59 MHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSK 118
Query: 195 LEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFL 232
L Y+ ++ +L + E ++ A+ +D L+ FL
Sbjct: 119 LTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFL 156
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%)
Query: 123 INAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSS 182
+ + R++L+ WM + E+FEL+ L+V ++D YL K ++ LQ +GA + + S
Sbjct: 26 VTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGS 85
Query: 183 KFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFL 232
K P +S L Y+ ++ +L + E ++ A+ +D L+ FL
Sbjct: 86 KIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFL 135
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 127 MRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDD 186
MR ++ WM+EV E + E LA+ +D +L + LQLLGAT +FV+SK +
Sbjct: 56 MRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE 115
Query: 187 RIP 189
IP
Sbjct: 116 TIP 118
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 127 MRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDD 186
MR ++ WM+EV E + E LA+ +D +L + LQLLGAT +FV+SK +
Sbjct: 42 MRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE 101
Query: 187 RIP 189
IP
Sbjct: 102 TIP 104
>pdb|1F5Q|B Chain B, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|D Chain D, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
Length = 252
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 122 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVD-LYLGKVVCSRLNLQLLGATAIFV 180
+ ++ R VL WM V + ++ LAV L+D L+L + R N Q A A+ +
Sbjct: 43 HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRI-DRENYQSTAAVALHI 101
Query: 181 SSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIK 214
+ K +P + + L Y+C + L +E+K
Sbjct: 102 AGKVRAYMPIKATQLAYLCGGATTADKLLTLEVK 135
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 117 STEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGAT 176
T + ++ + MR +L WM V + + L + LA+ L+D L S+ + Q G+
Sbjct: 40 GTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSA 99
Query: 177 AIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLV 216
+ V+SK P S L Y + ++S Q+L D E +L+
Sbjct: 100 CLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELL 139
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206
+ ++ D +L VCSR L LL + A+F+ FD + S L+ SH +
Sbjct: 201 DKIFYPHNFFDQFLATEVCSREMLNLLCSNALFIICGFDSK-NFNTSRLDVYLSHNPAGT 259
Query: 207 DLKDM-----EIKLVTAIGFDLGIPLSYR 230
+++M +K +D G P+ R
Sbjct: 260 SVQNMFHWTQAVKSGKFQAYDWGSPVQNR 288
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 108 IKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSR 167
IK YL +++ + NIN M++ + E + + L A + + + KV+ +
Sbjct: 261 IKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQ 320
Query: 168 LNLQLLGATAIFVSSKFDDRIP 189
QLLG +SS+F R+P
Sbjct: 321 ---QLLGEVLTQLSSRFKPRVP 339
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 169 NLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL----KDMEIKLVT 217
++L+GATA FV++ D+ P D+E++ SH S +DL +D+E ++++
Sbjct: 214 GVKLIGATAHFVTADLDEG-PIIAQDVEHV-SHRDSAEDLVRKGRDIERRVLS 264
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 108 IKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSR 167
IK YL +++ + NIN M++ + E + + L A + + + KV+ +
Sbjct: 259 IKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQ 318
Query: 168 LNLQLLGATAIFVSSKFDDRIP 189
QLLG +SS+F R+P
Sbjct: 319 ---QLLGEVLTQLSSRFKPRVP 337
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 108 IKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSR 167
IK YL +++ + NIN M++ + E + + L A + + + KV+ +
Sbjct: 653 IKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQ 712
Query: 168 LNLQLLGATAIFVSSKFDDRIP 189
QLLG +SS+F R+P
Sbjct: 713 ---QLLGEVLTQLSSRFKPRVP 731
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 108 IKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSR 167
IK YL +++ + NIN M++ + E + + L A + + + KV+ +
Sbjct: 669 IKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQ 728
Query: 168 LNLQLLGATAIFVSSKFDDRIP 189
QLLG +SS+F R+P
Sbjct: 729 ---QLLGEVLTQLSSRFKPRVP 747
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 155 LVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDM--- 211
D +L VCSR + LL + A+F+ F D + +S L+ SH + ++++
Sbjct: 217 FFDQFLATEVCSRETVDLLCSNALFIICGF-DTMNLNMSRLDVYLSHNPAGTSVQNVLHW 275
Query: 212 --EIKLVTAIGFDLGIPL 227
+K FD G P+
Sbjct: 276 SQAVKSGKFQAFDWGSPV 293
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 150 YLAVKLVD-LYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208
YL ++L D + G++ CS + L LLG+ V S+ D P + +YI ++
Sbjct: 97 YLCLQLRDDIVSGRLPCSFVTLALLGSYT--VQSELGDYDPDECGS-DYISEFRFAPNHT 153
Query: 209 KDMEIKLV 216
K++E K++
Sbjct: 154 KELEDKVI 161
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 150 YLAVKLVD-LYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208
YL ++L D + G++ CS + L LLG+ V S+ D P + +YI ++
Sbjct: 97 YLCLQLRDDIVSGRLPCSFVTLALLGSYT--VQSELGDYDPDECGS-DYISEFRFAPNHT 153
Query: 209 KDMEIKLV 216
K++E K++
Sbjct: 154 KELEDKVI 161
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 150 YLAVKL-VDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208
YL ++L D+ G++ CS L LLG+ I S+ D P+L ++Y+ +
Sbjct: 112 YLCLQLRQDIVAGRLPCSFATLALLGSYTI--QSELGD-YDPELHGVDYVSDFKLAPNQT 168
Query: 209 KDMEIKLV 216
K++E K++
Sbjct: 169 KELEEKVM 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,514,237
Number of Sequences: 62578
Number of extensions: 249190
Number of successful extensions: 718
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 54
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)