Query psy7892
Match_columns 240
No_of_seqs 223 out of 1496
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:29:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5q_B Gamma herpesvirus cycli 100.0 1.1E-39 3.7E-44 287.4 10.5 148 81-239 13-160 (252)
2 2f2c_A Cyclin homolog, V-cycli 100.0 2.4E-39 8.3E-44 284.3 12.1 152 80-239 10-163 (254)
3 2cch_B Cyclin A2, cyclin-A; co 100.0 6.1E-39 2.1E-43 282.6 13.8 147 88-239 3-150 (260)
4 1g3n_C V-cyclin; cyclin-depend 100.0 5.6E-39 1.9E-43 282.4 12.8 151 81-239 10-162 (257)
5 1w98_B Cyclin E, G1/S-specific 100.0 3.3E-38 1.1E-42 281.7 15.0 152 83-239 9-162 (283)
6 2b9r_A Human cyclin B1; cell c 100.0 1.9E-38 6.4E-43 281.1 11.5 148 86-239 1-149 (269)
7 3g33_B CCND3 protein; Ser/Thr 100.0 1.6E-37 5.5E-42 280.3 12.9 150 83-239 31-182 (306)
8 2w96_A G1/S-specific cyclin-D1 100.0 2.7E-36 9.2E-41 267.2 13.1 151 81-239 16-168 (271)
9 2ivx_A Cyclin-T2; transcriptio 99.9 2.4E-26 8.2E-31 201.4 10.2 117 122-239 25-157 (257)
10 2i53_A Cyclin K; cell cycle, t 99.9 6.1E-27 2.1E-31 204.9 4.1 117 122-239 35-162 (258)
11 3rgf_B Cyclin-C; protein kinas 99.9 1.4E-24 4.8E-29 193.6 12.5 115 125-239 40-168 (285)
12 1zp2_A RNA polymerase II holoe 99.9 2.1E-24 7.3E-29 186.9 12.8 115 122-238 23-144 (235)
13 2pk2_A Cyclin-T1, protein TAT; 99.9 1.8E-25 6.1E-30 205.6 5.1 117 122-239 32-164 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.9 1.3E-22 4.4E-27 184.1 10.3 112 126-238 55-173 (323)
15 1c9b_A General transcription f 99.7 2E-17 6.8E-22 140.2 11.8 111 126-239 3-113 (207)
16 1ais_B TFB TFIIB, protein (tra 99.5 1.2E-13 4.2E-18 116.1 10.1 110 127-239 8-119 (200)
17 3k7a_M Transcription initiatio 99.1 1.1E-10 3.9E-15 106.4 9.0 108 128-238 126-245 (345)
18 2pmi_B PHO85 cyclin PHO80, ami 98.7 5.7E-08 2E-12 86.6 9.0 154 64-237 17-183 (293)
19 4bbr_M Transcription initiatio 98.2 2.1E-06 7.2E-11 78.2 7.4 106 129-237 127-244 (345)
20 1ais_B TFB TFIIB, protein (tra 96.7 0.0049 1.7E-07 50.9 8.2 89 132-223 109-197 (200)
21 1c9b_A General transcription f 94.9 0.072 2.5E-06 44.0 7.5 86 132-220 103-188 (207)
22 2ivx_A Cyclin-T2; transcriptio 88.3 0.94 3.2E-05 38.4 6.5 89 132-220 147-239 (257)
23 2pk2_A Cyclin-T1, protein TAT; 88.2 1 3.5E-05 40.7 7.0 88 133-220 155-246 (358)
24 2i53_A Cyclin K; cell cycle, t 86.5 0.88 3E-05 38.5 5.2 89 132-220 152-250 (258)
25 1zp2_A RNA polymerase II holoe 84.6 0.42 1.4E-05 40.2 2.2 84 133-220 136-219 (235)
26 2f2c_A Cyclin homolog, V-cycli 83.6 2.7 9.3E-05 35.6 7.0 85 133-219 154-246 (254)
27 3rgf_B Cyclin-C; protein kinas 83.4 1.7 5.7E-05 37.8 5.6 83 132-219 158-240 (285)
28 1g3n_C V-cyclin; cyclin-depend 81.9 3.3 0.00011 35.1 6.9 86 132-219 152-246 (257)
29 2cch_B Cyclin A2, cyclin-A; co 80.7 2.5 8.5E-05 36.0 5.6 85 132-219 140-226 (260)
30 3k7a_M Transcription initiatio 80.6 0.33 1.1E-05 43.6 0.0 56 132-187 236-291 (345)
31 2b9r_A Human cyclin B1; cell c 77.6 1.9 6.3E-05 37.0 3.9 83 132-217 139-221 (269)
32 4bbr_M Transcription initiatio 75.8 0.55 1.9E-05 42.3 0.0 66 131-197 235-300 (345)
33 3h4c_A Transcription factor TF 74.8 8.8 0.0003 32.4 7.0 86 131-220 15-103 (260)
34 3g33_B CCND3 protein; Ser/Thr 74.3 6.7 0.00023 34.3 6.7 89 133-223 173-269 (306)
35 2w96_A G1/S-specific cyclin-D1 64.0 7.6 0.00026 33.0 4.7 90 132-223 158-259 (271)
36 1jkw_A Cyclin H; cell cycle, c 61.7 6.4 0.00022 34.7 3.8 90 131-220 167-260 (323)
37 3m03_A ORC6, origin recognitio 52.9 40 0.0014 24.6 6.2 78 135-217 6-89 (95)
38 1w98_B Cyclin E, G1/S-specific 46.2 66 0.0023 27.4 7.7 61 147-217 178-238 (283)
39 2qdj_A Retinoblastoma-associat 33.1 48 0.0017 29.1 4.7 66 135-200 6-74 (304)
40 2wh0_Q Pkcev3, protein kinase 28.8 41 0.0014 18.9 2.3 18 205-222 12-29 (31)
41 2ast_A S-phase kinase-associat 24.2 26 0.00089 27.3 1.2 54 143-208 93-149 (159)
42 3v7d_A Suppressor of kinetocho 23.8 26 0.00087 27.9 1.1 55 142-208 99-156 (169)
43 2p1m_A SKP1-like protein 1A; F 22.7 26 0.00089 27.5 1.0 37 171-208 112-148 (160)
44 1f5q_B Gamma herpesvirus cycli 21.1 2E+02 0.007 23.9 6.4 83 132-219 150-240 (252)
45 1yua_A Topoisomerase I; gene-r 21.1 41 0.0014 25.5 1.7 28 174-201 32-63 (122)
46 2ou1_A Apolipoprotein A-II; hi 20.9 38 0.0013 23.5 1.4 43 87-134 17-60 (77)
No 1
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.1e-39 Score=287.40 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=139.4
Q ss_pred CCCCccchhhhHHHHHHHHHHHHhhCCCCCccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q psy7892 81 TWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYL 160 (240)
Q Consensus 81 ~~~dp~~~~eY~~dI~~~L~~~E~~~~~~~yl~~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyL 160 (240)
...||.++++ +||++|+++|.++.+ ...|+ ++++.||.++|+||++|+..|++.++|+|+||+|+||||
T Consensus 13 ~~~dp~l~~d---~i~~~l~~~E~~~~p---~~~q~-----~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfL 81 (252)
T 1f5q_B 13 SLLNEEDCRQ---MIYRSEREHDARMVG---VNVDQ-----HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELF 81 (252)
T ss_dssp TTCCHHHHHH---HHHHHHHHHHHHHSS---SSHHH-----HHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CcCCHHHhHH---HHHHHHHHHHHHhCc---CccCC-----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 5568998865 999999999988643 44577 899999999999999999999999999999999999999
Q ss_pred hcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 161 GKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 161 s~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
++..+.+.++||+|+||||||||+||..||.+++|++++++.|++++|++||+.||++|+|+++.|||++||++|++.+
T Consensus 82 s~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~ 160 (252)
T 1f5q_B 82 LSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIM 160 (252)
T ss_dssp HHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=2.4e-39 Score=284.27 Aligned_cols=152 Identities=22% Similarity=0.340 Sum_probs=142.2
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHhhC-CCCCccC-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy7892 80 ETWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLP-FQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVD 157 (240)
Q Consensus 80 ~~~~dp~~~~eY~~dI~~~L~~~E~~~-~~~~yl~-~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilD 157 (240)
.+..||.++++ +|||+ |++.|.++ |.++|+. .|+ ++++.||.++++||++|+..|++.++|+|+||+|+|
T Consensus 10 ~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~D 81 (254)
T 2f2c_A 10 RAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQT-----EVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILD 81 (254)
T ss_dssp BCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCS-----SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCc-----cCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 35679999998 99999 99999886 6689996 688 999999999999999999999999999999999999
Q ss_pred HHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHH
Q psy7892 158 LYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237 (240)
Q Consensus 158 RyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k 237 (240)
||+++..+.+.++||+|+||||||||+||..||.+++|++++++.|++++|++||+.||++|+|+++.|||++||++|++
T Consensus 82 Rfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~ 161 (254)
T 2f2c_A 82 RYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCN 161 (254)
T ss_dssp HHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHH
T ss_pred HHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q psy7892 238 IR 239 (240)
Q Consensus 238 ~a 239 (240)
..
T Consensus 162 ~~ 163 (254)
T 2f2c_A 162 AL 163 (254)
T ss_dssp HT
T ss_pred Hc
Confidence 64
No 3
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=6.1e-39 Score=282.63 Aligned_cols=147 Identities=35% Similarity=0.626 Sum_probs=142.4
Q ss_pred hhhhHHHHHHHHHHHHhhC-CCCCccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccc
Q psy7892 88 VSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCS 166 (240)
Q Consensus 88 ~~eY~~dI~~~L~~~E~~~-~~~~yl~~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~ 166 (240)
|++|++|||+||+++|.++ |.++|+..|+ +|++.||.++++||++|+..|++.++|+++||+|+|||+++..+.
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~-----~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~ 77 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQP-----DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVL 77 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGGCS-----SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCC
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhcCC-----CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCC
Confidence 6899999999999999985 6689999999 999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 167 RLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 167 ~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
+.++||+|+||||||||+||..||++++|++++++.|++++|.+||+.||++|+|+++.|||++||++|++..
T Consensus 78 ~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l 150 (260)
T 2cch_B 78 RGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQ 150 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998753
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5.6e-39 Score=282.39 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=139.6
Q ss_pred CCCCccchhhhHHHHHHHHHHHHhhC-CCCCccC-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy7892 81 TWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLP-FQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDL 158 (240)
Q Consensus 81 ~~~dp~~~~eY~~dI~~~L~~~E~~~-~~~~yl~-~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDR 158 (240)
+..||.++.+ +||| +|++.|.++ |.++|+. .|+ ++++.||.++++||++|+..|++.++|+|+||+|+||
T Consensus 10 ~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DR 81 (257)
T 1g3n_C 10 GLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQ-----SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 81 (257)
T ss_dssp ------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTS-----SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCc-----cCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4569999998 9999 999999886 5679985 688 9999999999999999999999999999999999999
Q ss_pred HhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHH
Q psy7892 159 YLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238 (240)
Q Consensus 159 yLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~ 238 (240)
|+++..+.+.++||+|+||||||||+||..||.+++|++++++.|++++|++||+.||++|+|+++.|||++||++|++.
T Consensus 82 fls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~ 161 (257)
T 1g3n_C 82 LLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLK 161 (257)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q psy7892 239 R 239 (240)
Q Consensus 239 a 239 (240)
.
T Consensus 162 ~ 162 (257)
T 1g3n_C 162 L 162 (257)
T ss_dssp H
T ss_pred c
Confidence 4
No 5
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.3e-38 Score=281.66 Aligned_cols=152 Identities=24% Similarity=0.506 Sum_probs=146.3
Q ss_pred CCccchhhhHHHHHHHHHHHHhhC-CCCCccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q psy7892 83 EDPLQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLG 161 (240)
Q Consensus 83 ~dp~~~~eY~~dI~~~L~~~E~~~-~~~~yl~~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs 161 (240)
.+|.++.+|.+|||++|+.+|.++ +.++|+..|+ +|++.||.++++||++|+.+|++.++|+++||+|+|||++
T Consensus 9 ~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~-----~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls 83 (283)
T 1w98_B 9 PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-----LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMA 83 (283)
T ss_dssp CSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCT-----TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHH
T ss_pred CCcchhhcCHHHHHHHHHHHHHHhCCCchhhccCC-----CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 488999999999999999999986 6689999998 9999999999999999999999999999999999999999
Q ss_pred c-ccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 162 K-VVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 162 ~-~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
+ ..+.+.++||+|+||||||||+||..||.+++|++++++.|++++|++||+.||++|+|+++.|||++||++|++.+
T Consensus 84 ~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~ 162 (283)
T 1w98_B 84 TQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVA 162 (283)
T ss_dssp HCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHh
Confidence 8 57999999999999999999999999999999999999999999999999999999999999999999999999864
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.9e-38 Score=281.09 Aligned_cols=148 Identities=35% Similarity=0.702 Sum_probs=137.0
Q ss_pred cchhhhHHHHHHHHHHHHhhC-CCCCccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccc
Q psy7892 86 LQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVV 164 (240)
Q Consensus 86 ~~~~eY~~dI~~~L~~~E~~~-~~~~yl~~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~ 164 (240)
++|++|++|||+||+.+|.++ +.++|+.+| ++++.||.++++||.+|+..|++.++|+++||+|+|||+++..
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~q------~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~ 74 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLGR------EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS 74 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSSS------SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccCC------CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999986 568999865 6999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 165 CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 165 v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
+.+.++||+|+||||||||+||..||++++|++++++.|++++|.+||+.||++|+|+++.|||++||++|+++.
T Consensus 75 v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~ 149 (269)
T 2b9r_A 75 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIG 149 (269)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSS
T ss_pred CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=280.29 Aligned_cols=150 Identities=27% Similarity=0.421 Sum_probs=139.0
Q ss_pred CCccchhhhHHHHHHHHHHHHhhC-CCCCccC-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q psy7892 83 EDPLQVSCYAMHIFEYLKSREAEF-QIKDYLP-FQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYL 160 (240)
Q Consensus 83 ~dp~~~~eY~~dI~~~L~~~E~~~-~~~~yl~-~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyL 160 (240)
.||.++ |.++||++|+.+|.++ |.++|+. .|+ +|++.||.++++||++|+..|++.++|+++||+|||||+
T Consensus 31 ~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfl 103 (306)
T 3g33_B 31 PDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQR-----EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYL 103 (306)
T ss_dssp --------CHHHHHHHHHHHGGGGSCSSCCTTTSTT-----TCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCc-----cCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHH
Confidence 477776 8899999999999985 6679998 488 999999999999999999999999999999999999999
Q ss_pred hcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 161 GKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 161 s~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
++..+.+.++||+|+||||||||+||..||.+++|++++++.|++++|++||+.||++|+|+|+.|||++||++|++..
T Consensus 104 s~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l 182 (306)
T 3g33_B 104 SCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRL 182 (306)
T ss_dssp HHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999853
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.7e-36 Score=267.17 Aligned_cols=151 Identities=25% Similarity=0.397 Sum_probs=136.3
Q ss_pred CCCCccchhhhHHHHHHHHHHHHhhC-CCCCccC-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy7892 81 TWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLP-FQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDL 158 (240)
Q Consensus 81 ~~~dp~~~~eY~~dI~~~L~~~E~~~-~~~~yl~-~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDR 158 (240)
...||.++ .+||+++|+..|.++ |.++|+. .|+ +|++.||.++++||++|+.+|++..+|+++||+|+||
T Consensus 16 ~~~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDR 87 (271)
T 2w96_A 16 AYPDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQK-----EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDR 87 (271)
T ss_dssp ------------CHHHHHHHHHHHHTCCCTTHHHHTCS-----SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCC-----cCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHH
Confidence 34577777 679999999999885 6689986 588 9999999999999999999999999999999999999
Q ss_pred HhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHH
Q psy7892 159 YLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238 (240)
Q Consensus 159 yLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~ 238 (240)
|+++..+.+.++||+|+||||||||+||..||.+++|++++++.|++++|++||+.||++|+|+++.|||++||++|++.
T Consensus 88 fls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~ 167 (271)
T 2w96_A 88 FLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 167 (271)
T ss_dssp HHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHT
T ss_pred hCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred h
Q psy7892 239 R 239 (240)
Q Consensus 239 a 239 (240)
.
T Consensus 168 l 168 (271)
T 2w96_A 168 M 168 (271)
T ss_dssp S
T ss_pred c
Confidence 3
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.93 E-value=2.4e-26 Score=201.38 Aligned_cols=117 Identities=14% Similarity=0.308 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHh--
Q psy7892 122 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYIC-- 199 (240)
Q Consensus 122 ~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~-- 199 (240)
+....+|..+++||.+|+..|+|+.+|+++|++|||||+++..+.+.++|++|+||||||||+||. |+.+++++.++
T Consensus 25 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 25 DKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999999999999999999999999998 88999998765
Q ss_pred ------------CCCCC--HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 200 ------------SHTYS--IQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 200 ------------~~~yt--~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
++.|+ +++|++||+.||++|+|++++|||+.||.+|++..
T Consensus 104 ~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l 157 (257)
T 2ivx_A 104 CLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLV 157 (257)
T ss_dssp HHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHh
Confidence 34565 89999999999999999999999999999999864
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.93 E-value=6.1e-27 Score=204.92 Aligned_cols=117 Identities=20% Similarity=0.328 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhC-
Q psy7892 122 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS- 200 (240)
Q Consensus 122 ~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~- 200 (240)
++...||..+++||.+++..|+|+.+|+++|++|||||+++..+.+.++|++|+||||||||+|| .|+++++++..+.
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~ 113 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARS 113 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999 5889999997543
Q ss_pred ----CCC------CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 201 ----HTY------SIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 201 ----~~y------t~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
+.| ++++|++||+.||++|+|+++.|||+.||.+|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l 162 (258)
T 2i53_A 114 LLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQL 162 (258)
T ss_dssp HSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTB
T ss_pred HhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHh
Confidence 334 589999999999999999999999999999999753
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=193.65 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhC----
Q psy7892 125 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS---- 200 (240)
Q Consensus 125 ~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~---- 200 (240)
..+|..+++||.+|+..++|..+|+++|++|||||+.+..+...++|+||+||||||||+||..+|.+++++.++.
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k 119 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLK 119 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ----------CCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 201 ----------HTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 201 ----------~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
..+++++|++||+.||++|+|++++|+|+.||.+|++..
T Consensus 120 ~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 120 TRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp HHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 247899999999999999999999999999999999864
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.1e-24 Score=186.94 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccC-ccchhhhhhccccccccccCCCCChhhHHHHhC
Q psy7892 122 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSR-LNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS 200 (240)
Q Consensus 122 ~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~-~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~ 200 (240)
.+... |..+++||.+++..++|+.+|+++|++|||||+++..+.+ .++|+||+|||+||||+|| .|+++++++.+++
T Consensus 23 ~~~~~-R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~ 100 (235)
T 1zp2_A 23 CLSKD-TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEAN 100 (235)
T ss_dssp CSCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHH
T ss_pred chhHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHH
Confidence 34443 9999999999999999999999999999999999999999 9999999999999999999 5778999999987
Q ss_pred C------CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHH
Q psy7892 201 H------TYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238 (240)
Q Consensus 201 ~------~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~ 238 (240)
+ .+++++|.+||+.||++|+|++.+|+|+.||.+|++.
T Consensus 101 ~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~ 144 (235)
T 1zp2_A 101 DLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD 144 (235)
T ss_dssp TTCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHT
T ss_pred HHccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHH
Confidence 5 6899999999999999999999999999999999974
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.91 E-value=1.8e-25 Score=205.62 Aligned_cols=117 Identities=16% Similarity=0.322 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHh--
Q psy7892 122 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYIC-- 199 (240)
Q Consensus 122 ~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~-- 199 (240)
+....||..+++||.+|+..|+|..+|+++||+|||||+++..+.+.++|+||+||||||||+||. |+.+++|+.++
T Consensus 32 ~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 32 DKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHH
Confidence 344689999999999999999999999999999999999999999999999999999999999999 88999998654
Q ss_pred ------------CCCCC--HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 200 ------------SHTYS--IQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 200 ------------~~~yt--~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
++.|+ +++|++||+.||++|+|+|++|||+.||.+|++..
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l 164 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLV 164 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHT
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHc
Confidence 34455 89999999999999999999999999999999864
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.87 E-value=1.3e-22 Score=184.11 Aligned_cols=112 Identities=12% Similarity=0.158 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCC--
Q psy7892 126 EMRSVLVDWMVEVQETFE--LNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSH-- 201 (240)
Q Consensus 126 ~~R~~lvdWl~ev~~~~~--L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~-- 201 (240)
.+|...++||.+||..|+ |+.+|+++|+.|||||+....+.+.++|+||+||||||||+||. |+++++|++.+.+
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p 133 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESP 133 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccCh
Confidence 588999999999999999 99999999999999999999999999999999999999999998 6789999987654
Q ss_pred ---CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHH
Q psy7892 202 ---TYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238 (240)
Q Consensus 202 ---~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~ 238 (240)
.|++++|++||+.||++|+|+|++++|+.||.+|++.
T Consensus 134 ~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~ 173 (323)
T 1jkw_A 134 LGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHH
Confidence 3778999999999999999999999999999999853
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.73 E-value=2e-17 Score=140.23 Aligned_cols=111 Identities=6% Similarity=0.111 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCH
Q psy7892 126 EMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSI 205 (240)
Q Consensus 126 ~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~ 205 (240)
+......+||.+++..++|+..|+..|+.|++||+....+...+.+++|+||+|||||+||. |.+++|++.+++ ++.
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~ 79 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISK 79 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCH
Confidence 34567889999999999999999999999999999999999999999999999999999997 889999999987 899
Q ss_pred HHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892 206 QDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR 239 (240)
Q Consensus 206 ~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a 239 (240)
.+|.++|+.||+.|+|++..++|+.||.+|++..
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l 113 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNL 113 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence 9999999999999999999999999999998753
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.48 E-value=1.2e-13 Score=116.07 Aligned_cols=110 Identities=8% Similarity=0.110 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHH
Q psy7892 127 MRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 206 (240)
Q Consensus 127 ~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ 206 (240)
......++|.+++..++|+..+...|..+++|++.+..+.....+.++++|+++|||.++ .|.+++|++.+++ ++..
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~~ 84 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDKK 84 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCHH
Confidence 456789999999999999999999999999999999989989999999999999999988 6889999999986 8899
Q ss_pred HHHHHHHHHHHHcCCccCC--CCHHHHHHHHHHHh
Q psy7892 207 DLKDMEIKLVTAIGFDLGI--PLSYRFLRRYARIR 239 (240)
Q Consensus 207 ei~~mE~~IL~~L~f~L~~--pTp~~FL~~f~k~a 239 (240)
+|.++++.|++.|+|++.. ++|..|+.+|.+..
T Consensus 85 ~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L 119 (200)
T 1ais_B 85 EIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 119 (200)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence 9999999999999999999 99999999998753
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.1e-10 Score=106.38 Aligned_cols=108 Identities=6% Similarity=0.073 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHH
Q psy7892 128 RSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 207 (240)
Q Consensus 128 R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~e 207 (240)
.......|..++..++|+..+.-.|..||.|++....+.....+.|+++||+||+|.++. |.++++++.+++ ++..+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 346789999999999999999999999999999999999999999999999999998876 889999999987 88999
Q ss_pred HHHHHHHHHHHcC------------CccCCCCHHHHHHHHHHH
Q psy7892 208 LKDMEIKLVTAIG------------FDLGIPLSYRFLRRYARI 238 (240)
Q Consensus 208 i~~mE~~IL~~L~------------f~L~~pTp~~FL~~f~k~ 238 (240)
|.++++.|++.|+ +++..++|..|+.+|++.
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~ 245 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSH 245 (345)
T ss_dssp HHHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHH
Confidence 9999999999999 999999999999999864
No 18
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.67 E-value=5.7e-08 Score=86.57 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=111.3
Q ss_pred cccCCCCCCCCCCCCCCCCCCccchhhhHHHHHHHHHHHHhhCCC---------CCccCc-CCCCCCCCCCHHHHHHHHH
Q psy7892 64 KLEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQI---------KDYLPF-QSSTEKGNINAEMRSVLVD 133 (240)
Q Consensus 64 ~~~~~~~p~~v~~~d~~~~~dp~~~~eY~~dI~~~L~~~E~~~~~---------~~yl~~-q~~~~~~~it~~~R~~lvd 133 (240)
.++...+|..+.+-+.+ .+-++...+...+.++-...+. ..|-.. .| .|+ +-+
T Consensus 17 ~~~~~~lp~~f~~~~~~------dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P-----~IS------I~~ 79 (293)
T 2pmi_B 17 GIPKVILPADFNKCSRT------DLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPP-----NIS------IFN 79 (293)
T ss_dssp CCCCCBCCSSGGGSCHH------HHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCC-----SSC------HHH
T ss_pred CCCcccCCHHHhcCCHH------HHHHHHHHHHHHHHHcCccccccccccccccccccCCCCC-----CCc------HHH
Confidence 34455677776654332 2335556666666655433321 112111 22 343 677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhccc---ccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHH
Q psy7892 134 WMVEVQETFELNHETLYLAVKLVDLYLGKVV---CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKD 210 (240)
Q Consensus 134 Wl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~---v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~ 210 (240)
|+.++.....++.+++..|+.|+||+..... +...+.+-+-++|+.+|+|+-+.....-+.+..++ .++.+|+..
T Consensus 80 Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ELN~ 157 (293)
T 2pmi_B 80 YFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCHELNI 157 (293)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHHHHHH
Confidence 9999999999999999999999999988533 56778888999999999999888777888888884 479999999
Q ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHH
Q psy7892 211 MEIKLVTAIGFDLGIPLSYRFLRRYAR 237 (240)
Q Consensus 211 mE~~IL~~L~f~L~~pTp~~FL~~f~k 237 (240)
||+..|..|+|+|.++. -.|..+|+.
T Consensus 158 LE~eFL~lLdf~L~V~~-ee~~~cy~E 183 (293)
T 2pmi_B 158 LENDFLKRVNYRIIPRD-HNITLCSIE 183 (293)
T ss_dssp HHHHHHHTTTTCCSCCT-THHHHHHHH
T ss_pred HHHHHHHHcCCceeeCH-HHHHHHHHH
Confidence 99999999999998664 456666543
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.21 E-value=2.1e-06 Score=78.23 Aligned_cols=106 Identities=7% Similarity=0.096 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHH
Q psy7892 129 SVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208 (240)
Q Consensus 129 ~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei 208 (240)
......|.+++..++|+..+.-.|..++.+++....+.......++++|++||+|.++ .|.++.++..+++ .++.+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHH
Confidence 3467789999999999999999999999999999888888899999999999999876 5778999999886 678999
Q ss_pred HHHHHHHHHHcCCc------------cCCCCHHHHHHHHHH
Q psy7892 209 KDMEIKLVTAIGFD------------LGIPLSYRFLRRYAR 237 (240)
Q Consensus 209 ~~mE~~IL~~L~f~------------L~~pTp~~FL~~f~k 237 (240)
-+..+.|.+.|+.. +....|..|+.+|..
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s 244 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCS 244 (345)
T ss_dssp HHHHHHHHHCC------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHH
Confidence 99999999999974 667789999999975
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.75 E-value=0.0049 Score=50.90 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHH
Q psy7892 132 VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDM 211 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~m 211 (240)
.++|.+.+..++++.++...|..++.+......+.......++++|+++|++... .+.+.+++..+++ .+...|...
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~-~~~t~~ei~~~~~--vs~~ti~~~ 185 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEG-EKRTQREVAEVAR--VTEVTVRNR 185 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhC--CCHHHHHHH
Confidence 4678889999999999999999999999987777778888999999999999866 4557899998887 688999999
Q ss_pred HHHHHHHcCCcc
Q psy7892 212 EIKLVTAIGFDL 223 (240)
Q Consensus 212 E~~IL~~L~f~L 223 (240)
=+.+.+.|+..+
T Consensus 186 ~~~l~~~l~~~~ 197 (200)
T 1ais_B 186 YKELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHcCCCC
Confidence 999999998655
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.93 E-value=0.072 Score=44.02 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHH
Q psy7892 132 VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDM 211 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~m 211 (240)
..+|.+.+..++++.++..+|..++..-+...-.......-||++|+++|++..+ .+.+.+++...++ ++..+|...
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~--v~~~tI~~~ 179 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAG--VADVTIRQS 179 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhC--CCHHHHHHH
Confidence 5677889999999999999999999998876656778888899999999999876 3456788887775 678888887
Q ss_pred HHHHHHHcC
Q psy7892 212 EIKLVTAIG 220 (240)
Q Consensus 212 E~~IL~~L~ 220 (240)
=+.+++.++
T Consensus 180 ~~~l~~~l~ 188 (207)
T 1c9b_A 180 YRLIYPRAP 188 (207)
T ss_dssp HHHHGGGHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=88.28 E-value=0.94 Score=38.41 Aligned_cols=89 Identities=9% Similarity=0.125 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cccccCccchhhhhhccccccccccCCCCCh---hhHHHHhCCCCCHHH
Q psy7892 132 VDWMVEVQETFELNHETLYLAVKLVDLYLG-KVVCSRLNLQLLGATAIFVSSKFDDRIPPQL---SDLEYICSHTYSIQD 207 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl~lAV~ilDRyLs-~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i---~dl~~~~~~~yt~~e 207 (240)
.+++......++.+.+...+|..++..-+. ....-...-..||++|+++|++.-....|.. ..+....+..++.++
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~ 226 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLEL 226 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHH
Confidence 356667777888999988999888865553 2224556678899999999999865432211 122222344689999
Q ss_pred HHHHHHHHHHHcC
Q psy7892 208 LKDMEIKLVTAIG 220 (240)
Q Consensus 208 i~~mE~~IL~~L~ 220 (240)
|...-..|+..+.
T Consensus 227 l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 227 LDELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 23
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=88.22 E-value=1 Score=40.65 Aligned_cols=88 Identities=8% Similarity=0.094 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhccc-ccCccchhhhhhccccccccccCCCCCh---hhHHHHhCCCCCHHHH
Q psy7892 133 DWMVEVQETFELNHETLYLAVKLVDLYLGKVV-CSRLNLQLLGATAIFVSSKFDDRIPPQL---SDLEYICSHTYSIQDL 208 (240)
Q Consensus 133 dWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~-v~~~~lqLvg~tcL~IAsK~eE~~~p~i---~dl~~~~~~~yt~~ei 208 (240)
+||......++.+.+...+|..++..-+.... .-...-..||++|+++|++.-....|.. ..+....+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 46666677788889988999988866553222 4556677899999999999865432211 1222223445899999
Q ss_pred HHHHHHHHHHcC
Q psy7892 209 KDMEIKLVTAIG 220 (240)
Q Consensus 209 ~~mE~~IL~~L~ 220 (240)
...-..|+..++
T Consensus 235 ~~i~~~il~~y~ 246 (358)
T 2pk2_A 235 DELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=86.48 E-value=0.88 Score=38.53 Aligned_cols=89 Identities=6% Similarity=0.123 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCC------hhhHHHHhCC
Q psy7892 132 VDWMVEVQETFELNH----ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQ------LSDLEYICSH 201 (240)
Q Consensus 132 vdWl~ev~~~~~L~~----eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~------i~dl~~~~~~ 201 (240)
.+++...+..++.+. +...+|..+++.-+.........-..||++|+++|++......+. -..+......
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~ 231 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQ 231 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSS
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhcc
Confidence 357777888888887 577889999988876666667778899999999999975532211 1111111123
Q ss_pred CCCHHHHHHHHHHHHHHcC
Q psy7892 202 TYSIQDLKDMEIKLVTAIG 220 (240)
Q Consensus 202 ~yt~~ei~~mE~~IL~~L~ 220 (240)
.++.++|...-..|++...
T Consensus 232 ~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 232 DVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SCCHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6899999999999988765
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=84.57 E-value=0.42 Score=40.20 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHH
Q psy7892 133 DWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDME 212 (240)
Q Consensus 133 dWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE 212 (240)
++|...+..++++.++..+|..++..-+.........-..||++|+++|++......| .+-.... .++.++|...=
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~--~~~~~~~--~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP--KLLDLIK--STDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH--HHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC--CCcchhh--cCCHHHHHHHH
Confidence 4566666678999999999999999887665566777788999999999997543211 1111221 56788888888
Q ss_pred HHHHHHcC
Q psy7892 213 IKLVTAIG 220 (240)
Q Consensus 213 ~~IL~~L~ 220 (240)
..|+....
T Consensus 212 ~~i~~ly~ 219 (235)
T 1zp2_A 212 QRIISIYY 219 (235)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88877643
No 26
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=83.64 E-value=2.7 Score=35.55 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCHHHH----HHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCC----hhhHHHHhCCCCC
Q psy7892 133 DWMVEVQETFELNHETL----YLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQ----LSDLEYICSHTYS 204 (240)
Q Consensus 133 dWl~ev~~~~~L~~eTl----~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~----i~dl~~~~~~~yt 204 (240)
+|+......++++.++. .+|..+++.-+.........-..||++|+++|.+.....+.. ...+..+++ |+
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg--~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILN--FS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHC--cC
Confidence 45555666677776653 357777776665555667777889999999999985333322 456666664 78
Q ss_pred HHHHHHHHHHHHHHc
Q psy7892 205 IQDLKDMEIKLVTAI 219 (240)
Q Consensus 205 ~~ei~~mE~~IL~~L 219 (240)
.++|...=..|.+.+
T Consensus 232 ~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889988877776654
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=83.42 E-value=1.7 Score=37.75 Aligned_cols=83 Identities=7% Similarity=0.058 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHH
Q psy7892 132 VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDM 211 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~m 211 (240)
.++|...+..++.+.++..+|..++..-+.....-...-..||++|+++|++..... ........ .++.++|..+
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~---~~~W~~~~--~~~~~~l~~~ 232 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKD---ARQWFAEL--SVDMEKILEI 232 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCC---CHHHHHTS--CSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCC---hhhHHHHH--CCCHHHHHHH
Confidence 356677777888888999999999988775555556677889999999999976532 23343333 4788888888
Q ss_pred HHHHHHHc
Q psy7892 212 EIKLVTAI 219 (240)
Q Consensus 212 E~~IL~~L 219 (240)
=..|+...
T Consensus 233 ~~~il~ly 240 (285)
T 3rgf_B 233 IRVILKLY 240 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=81.91 E-value=3.3 Score=35.08 Aligned_cols=86 Identities=10% Similarity=0.006 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCHHH----HHHHHHHHHHHhhcccccCccchhhhhhccccccccccCC-----CCChhhHHHHhCCC
Q psy7892 132 VDWMVEVQETFELNHET----LYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRI-----PPQLSDLEYICSHT 202 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eT----l~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~-----~p~i~dl~~~~~~~ 202 (240)
.+|+......++++.++ ..+|..+++.-+.........-..||++|+++|.+.-... +.....+..+++
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~-- 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILG-- 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHC--
Confidence 56677777777777665 3457777776665555666777889999999999976642 222445555554
Q ss_pred CCHHHHHHHHHHHHHHc
Q psy7892 203 YSIQDLKDMEIKLVTAI 219 (240)
Q Consensus 203 yt~~ei~~mE~~IL~~L 219 (240)
++.++|...=..|...+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78899988877776654
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=80.71 E-value=2.5 Score=35.96 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhccc-ccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHH
Q psy7892 132 VDWMVEVQETFELNH-ETLYLAVKLVDLYLGKVV-CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLK 209 (240)
Q Consensus 132 vdWl~ev~~~~~L~~-eTl~lAV~ilDRyLs~~~-v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~ 209 (240)
.+|+......++++. .+..+|-.+++.-+.... .....-..||++|+++|++.-+. +.....+..+++ ++.++|.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g--~~~~~i~ 216 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTG--YTLESLK 216 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhC--cCHHHHH
Confidence 578888888888776 777888888887665544 56667788999999999987554 334456666664 7888898
Q ss_pred HHHHHHHHHc
Q psy7892 210 DMEIKLVTAI 219 (240)
Q Consensus 210 ~mE~~IL~~L 219 (240)
..=..|...+
T Consensus 217 ~~~~~l~~~~ 226 (260)
T 2cch_B 217 PCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777654
No 30
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=80.58 E-value=0.33 Score=43.61 Aligned_cols=56 Identities=5% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccC
Q psy7892 132 VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDR 187 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~ 187 (240)
.++|.+.+..++++.++...|..++.+.+.........-.-||++|++||++....
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC
Confidence 37788999999999999999999999988765566667778899999999998653
No 31
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=77.60 E-value=1.9 Score=37.05 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHH
Q psy7892 132 VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDM 211 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~m 211 (240)
.+||...+...+++.++..+|-.+++.-+.........-..||++|+++|++.-+.. +....+..+++ |+.++|...
T Consensus 139 ~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg--~~~~~l~~~ 215 (269)
T 2b9r_A 139 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLS--YTEESLLPV 215 (269)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSC--CCSSTTTTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHC--CCHHHHHHH
Confidence 467778888889999998999999998887666667777889999999999875532 23344555553 455555544
Q ss_pred HHHHHH
Q psy7892 212 EIKLVT 217 (240)
Q Consensus 212 E~~IL~ 217 (240)
=..|+.
T Consensus 216 ~~~l~~ 221 (269)
T 2b9r_A 216 MQHLAK 221 (269)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 32
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=75.81 E-value=0.55 Score=42.27 Aligned_cols=66 Identities=6% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHH
Q psy7892 131 LVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEY 197 (240)
Q Consensus 131 lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~ 197 (240)
..++|.+.+..++++.++...|..++.+.....-.....-.-|+++|+++|+..... ..+.+++..
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~ 300 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQ 300 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 347899999999999999999999999988765555666777899999999998653 223444443
No 33
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=74.81 E-value=8.8 Score=32.43 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc---cccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHH
Q psy7892 131 LVDWMVEVQETFELNHETLYLAVKLVDLYLGKV---VCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 207 (240)
Q Consensus 131 lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~~---~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~e 207 (240)
+.+-|+.++.+-+++..++--||.+--.|.-.. .....+-|-|+++|++||+-- -..|.++.++. .-|.+...=+
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~-~~~PiplaE~r-~lD~sL~Dve 92 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEE-AQQPLPLAEVR-CLDSSLGDVE 92 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH-TTCCCCHHHHH-HHCTTCCCHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHH-cCCCccHHHHH-HHhhhhhHHH
Confidence 455669999999999999999999999998654 366778889999999999862 23566676654 3455555444
Q ss_pred HHHHHHHHHHHcC
Q psy7892 208 LKDMEIKLVTAIG 220 (240)
Q Consensus 208 i~~mE~~IL~~L~ 220 (240)
+++.| |++.++
T Consensus 93 lrr~E--iv~~l~ 103 (260)
T 3h4c_A 93 LRRAD--IVRELH 103 (260)
T ss_dssp HHHHH--HHHHTT
T ss_pred HHHHH--HHHHcc
Confidence 44443 444443
No 34
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=74.27 E-value=6.7 Score=34.32 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCHHH----HHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCCh----hhHHHHhCCCCC
Q psy7892 133 DWMVEVQETFELNHET----LYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQL----SDLEYICSHTYS 204 (240)
Q Consensus 133 dWl~ev~~~~~L~~eT----l~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i----~dl~~~~~~~yt 204 (240)
+||......+++..+. ...|-.+++.-+.........-..||++|+++|.+.-+..++.. ..+..+++ |+
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg--~~ 250 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITG--TE 250 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHC--CC
Confidence 3555555556655432 24566677766655556667778899999999999776555442 34445544 78
Q ss_pred HHHHHHHHHHHHHHcCCcc
Q psy7892 205 IQDLKDMEIKLVTAIGFDL 223 (240)
Q Consensus 205 ~~ei~~mE~~IL~~L~f~L 223 (240)
.++|...=..|+..+.=.+
T Consensus 251 ~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 251 VDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999988888887765443
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=64.04 E-value=7.6 Score=33.05 Aligned_cols=90 Identities=11% Similarity=-0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCHHHH----HHHHHHHHHHhhcccccCccchhhhhhccccccccccC----CC---C-ChhhHHHHh
Q psy7892 132 VDWMVEVQETFELNHETL----YLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDR----IP---P-QLSDLEYIC 199 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl----~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~----~~---p-~i~dl~~~~ 199 (240)
.+|+......++++.++. ..|..+++..+.........-..||++|+++|.+.-+. .+ . ..+.+..++
T Consensus 158 ~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~ 237 (271)
T 2w96_A 158 HDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVI 237 (271)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHH
Confidence 567777778888877764 34666666544333344556678999999999875431 11 1 133455555
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcc
Q psy7892 200 SHTYSIQDLKDMEIKLVTAIGFDL 223 (240)
Q Consensus 200 ~~~yt~~ei~~mE~~IL~~L~f~L 223 (240)
+ ++.++|...=..|+..++=.+
T Consensus 238 ~--v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 238 K--CDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp T--SCHHHHHHHHHHHHHHHTTTT
T ss_pred C--cCHHHHHHHHHHHHHHHHHHH
Confidence 4 789999998888888776544
No 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=61.71 E-value=6.4 Score=34.72 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCC-hhhHHHHhCCCCCHH
Q psy7892 131 LVDWMVEVQETF---ELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQ-LSDLEYICSHTYSIQ 206 (240)
Q Consensus 131 lvdWl~ev~~~~---~L~~eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~-i~dl~~~~~~~yt~~ 206 (240)
+..++..+...+ +...+...+|..++..-+.....-...-..||++|+++|++......+. ...+....+..++.+
T Consensus 167 L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~ 246 (323)
T 1jkw_A 167 FEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLS 246 (323)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHH
Confidence 445555555442 2334556778888876554444445667789999999999976653332 233323323567778
Q ss_pred HHHHHHHHHHHHcC
Q psy7892 207 DLKDMEIKLVTAIG 220 (240)
Q Consensus 207 ei~~mE~~IL~~L~ 220 (240)
+|...=+.|+..+.
T Consensus 247 ~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 247 QLLDIMKSMRNLVK 260 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777766554
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=52.86 E-value=40 Score=24.63 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=53.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhccc------ccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHH
Q psy7892 135 MVEVQETFELNHETLYLAVKLVDLYLGKVV------CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208 (240)
Q Consensus 135 l~ev~~~~~L~~eTl~lAV~ilDRyLs~~~------v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei 208 (240)
+.++|..|++.. ....|-.++++|=..-+ +.-++-+ ..++|+|.|||..-..... ..|+..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK-~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDK-NKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCH-HHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCH-HHHHHHHC--CCHHHH
Confidence 467889999765 88888899999986532 3444444 4568999999987665543 34555443 467777
Q ss_pred HHHHHHHHH
Q psy7892 209 KDMEIKLVT 217 (240)
Q Consensus 209 ~~mE~~IL~ 217 (240)
-+.+..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766544
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=46.19 E-value=66 Score=27.35 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHH
Q psy7892 147 ETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVT 217 (240)
Q Consensus 147 eTl~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~ 217 (240)
.++..|..+++.-+.........-..||++|+++|+. .+.+..+++ |+.++|...-..|+.
T Consensus 178 ~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~--------~~~l~~~tg--~~~~~i~~c~~~l~~ 238 (283)
T 1w98_B 178 QIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS--------SELMQKVSG--YQWCDIENCVKWMVP 238 (283)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC--------HHHHHHHSC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC--------hHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3444566677776655555666777899999999975 344555553 788888876665543
No 39
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=33.15 E-value=48 Score=29.14 Aligned_cols=66 Identities=9% Similarity=-0.040 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcc---cccCccchhhhhhccccccccccCCCCChhhHHHHhC
Q psy7892 135 MVEVQETFELNHETLYLAVKLVDLYLGKV---VCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS 200 (240)
Q Consensus 135 l~ev~~~~~L~~eTl~lAV~ilDRyLs~~---~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~ 200 (240)
..++|..++++..|.--|..++.+.-+.. .-....-+..-++||++|+.-.+....++..+++.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 45789999999999999999999966531 1122233333445699999877777788888888875
No 40
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=28.79 E-value=41 Score=18.93 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHcCCc
Q psy7892 205 IQDLKDMEIKLVTAIGFD 222 (240)
Q Consensus 205 ~~ei~~mE~~IL~~L~f~ 222 (240)
.++|.++|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 588999999999999987
No 41
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=24.23 E-value=26 Score=27.34 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=35.2
Q ss_pred CCCHHHHH---HHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHH
Q psy7892 143 ELNHETLY---LAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208 (240)
Q Consensus 143 ~L~~eTl~---lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei 208 (240)
+++.++++ +|-+|||- -.|+-++|-++|..+....|-.++.+..+. +-||.++-
T Consensus 93 ~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~-~d~t~eEe 149 (159)
T 2ast_A 93 KVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIK-NDFTEEEE 149 (159)
T ss_dssp CSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCC-CCSCTTHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHH
Confidence 56666664 35555543 347788999999998877665566665554 34777654
No 42
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=23.78 E-value=26 Score=27.92 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=36.8
Q ss_pred cCCCHHHHH---HHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHH
Q psy7892 142 FELNHETLY---LAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208 (240)
Q Consensus 142 ~~L~~eTl~---lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei 208 (240)
+++..++++ +|.+|||- -.|+-++|-.+|.++....|-.++.+..+.+ -||.++-
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~n-d~t~eEe 156 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN-DFTPEEE 156 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCC-CCCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 356777664 35555543 3577889999999888776655666666654 4888754
No 43
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.67 E-value=26 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=26.1
Q ss_pred hhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHH
Q psy7892 171 QLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 208 (240)
Q Consensus 171 qLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei 208 (240)
.|+-++|-++|..+....|-.++.+..+. +-||.++-
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I~-nd~t~eEe 148 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIK-NDFTPEEE 148 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCC-CCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHH
Confidence 47888999999998776555555555554 35887654
No 44
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=21.14 E-value=2e+02 Score=23.95 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCHHHH----HHHHHHHHHHhhcccccCccchhhhhhccccccccccCCCCC----hhhHHHHhCCCC
Q psy7892 132 VDWMVEVQETFELNHETL----YLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQ----LSDLEYICSHTY 203 (240)
Q Consensus 132 vdWl~ev~~~~~L~~eTl----~lAV~ilDRyLs~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~----i~dl~~~~~~~y 203 (240)
.+|+......++...+.. .+|-.+++..+.....-...--.||++|+..+.+ ..++. ...+..+ ..|
T Consensus 150 ~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~---~~~~~~~~~~~~L~~~--t~~ 224 (252)
T 1f5q_B 150 TDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMN---QKYDYYENRIDGVCKS--LYI 224 (252)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhc---cCCCchhhHHHHHHHH--HCc
Confidence 456666666666665542 2455556666554444556667889998655542 12222 2223333 358
Q ss_pred CHHHHHHHHHHHHHHc
Q psy7892 204 SIQDLKDMEIKLVTAI 219 (240)
Q Consensus 204 t~~ei~~mE~~IL~~L 219 (240)
+.+++..+=..|...|
T Consensus 225 ~~~~l~~C~~~i~~~l 240 (252)
T 1f5q_B 225 TKEELHQCCDLVDIAI 240 (252)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999888887766
No 45
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=21.09 E-value=41 Score=25.48 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=22.7
Q ss_pred hhhcccccc----ccccCCCCChhhHHHHhCC
Q psy7892 174 GATAIFVSS----KFDDRIPPQLSDLEYICSH 201 (240)
Q Consensus 174 g~tcL~IAs----K~eE~~~p~i~dl~~~~~~ 201 (240)
|++-||+|+ |..|+.+|.+.+|+..-+.
T Consensus 32 GAsGlFlAAs~FPK~RETRaP~V~EL~~~~d~ 63 (122)
T 1yua_A 32 GAAGVFLAANTFPKSRETRAPLVEELYRFRDR 63 (122)
T ss_dssp CSSSCEEEETTTTSCCCCCSCBHHHHHHTTTT
T ss_pred CchhhhhhhccCCccccccchHHHHHHHHHHh
Confidence 788899875 6789999999999876543
No 46
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=20.90 E-value=38 Score=23.48 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=34.8
Q ss_pred chhhhHHHHHHHHHHHHhhCCCCCccCc-CCCCCCCCCCHHHHHHHHHH
Q psy7892 87 QVSCYAMHIFEYLKSREAEFQIKDYLPF-QSSTEKGNINAEMRSVLVDW 134 (240)
Q Consensus 87 ~~~eY~~dI~~~L~~~E~~~~~~~yl~~-q~~~~~~~it~~~R~~lvdW 134 (240)
-+.+|.+|..+.-+.-|.+-....|+.+ |. .++|-.+....|-
T Consensus 17 t~TdyGKDL~EKak~~ElQ~QakaYfektqe-----qltPlvkkagTdl 60 (77)
T 2ou1_A 17 TVTDYGKDLMEKVKSPELQAEAKSYFEKSKE-----QLTPLIKKAGTEL 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHT-----TTSHHHHTHHHHT
T ss_pred HHHHHhHHHHHHcccHHHHHHHHHHHHHHHH-----HHhHHHHHhhhHH
Confidence 4678999999999999988777889886 66 8899877765554
Done!