RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7892
(240 letters)
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 184 bits (470), Expect = 2e-58
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 87 QVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELN 145
+V Y I YL+ E + + K Y+ Q +I MR++LVDW+VEV E ++L
Sbjct: 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQP-----DITNSMRAILVDWLVEVGEEYKLQ 56
Query: 146 HETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSI 205
+ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+
Sbjct: 57 NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTK 116
Query: 206 QDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237
+ + ME ++ + FDL P +FL +Y
Sbjct: 117 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFL 148
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 183 bits (466), Expect = 6e-58
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 6/165 (3%)
Query: 75 DDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKD-YLPFQSSTEKGNINAEMRSVLVD 133
D ++ + + LK RE Q+ + + R++L+
Sbjct: 3 DSPNRLNRAKIDSTTMKDPRVLNNLKLRELLLPKFTSLWEIQT-----EVTVDNRTILLT 57
Query: 134 WMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLS 193
WM + E+FEL+ L+V ++D YL K ++ LQ +GA + + SK P +S
Sbjct: 58 WMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVS 117
Query: 194 DLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
L Y+ ++ +L + E ++ A+ +D L+ FL
Sbjct: 118 KLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNA 162
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 183 bits (466), Expect = 9e-58
Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 5/151 (3%)
Query: 88 VSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHE 147
S Y I+ YL+ EA ++ + MR++L+DW+V+VQ F L E
Sbjct: 3 SSEYVKDIYAYLRQLEAAQAVRPKYLLGR-----EVTGNMRAILIDWLVQVQMKFRLLQE 57
Query: 148 TLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 207
T+Y+ V ++D ++ + LQL+G TA+F++SK+++ PP++ D ++ +TY+
Sbjct: 58 TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117
Query: 208 LKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
++ ME+K++ A+ F LG PL FLRR ++I
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRRASKI 148
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 182 bits (464), Expect = 3e-57
Identities = 39/165 (23%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 78 DKETWEDPLQVSCYAMH--IFEYLKSREAEFQI-KDYLPFQSSTEKGNINAEMRSVLVDW 134
+ PL V +A +++ + ++E + + +L + +MR++L+DW
Sbjct: 2 IAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-----LLQPKMRAILLDW 56
Query: 135 MVEVQETFELNHETLYLAVKLVDLYL-GKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLS 193
++EV E ++L+ ET YLA D Y+ + + LQL+G +++F+++K ++ PP+L
Sbjct: 57 LMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH 116
Query: 194 DLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
Y+ S ++ ME+ ++ A+ + L +L Y ++
Sbjct: 117 QFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQV 161
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 171 bits (436), Expect = 9e-53
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 8/166 (4%)
Query: 73 DVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVL 131
+ DP + + L E + + Y + I MR +L
Sbjct: 22 GTRHAPRAGP-DPRL--LGDQRVLQSLLRLEERYVPRASYF----QCVQREIKPHMRKML 74
Query: 132 VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQ 191
WM+EV E E LA+ +D YL V + LQLLGA + ++SK + P
Sbjct: 75 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT 134
Query: 192 LSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237
+ L H S + L+D E+ ++ + +DL +++ FL
Sbjct: 135 IEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILH 180
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 168 bits (427), Expect = 8e-52
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 9/165 (5%)
Query: 74 VDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLV 132
V+ + + L + + E Y + + MR ++
Sbjct: 10 VETIRRAYPDANL----LNDRVLRAMLKAEETCAPSVSYF----KCVQKEVLPSMRKIVA 61
Query: 133 DWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQL 192
WM+EV E + E LA+ +D +L + LQLLGAT +FV+SK + IP
Sbjct: 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTA 121
Query: 193 SDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237
L ++ ++L ME+ LV + ++L + F+ +
Sbjct: 122 EKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLS 166
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 165 bits (420), Expect = 6e-51
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 14/168 (8%)
Query: 76 DFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKD--YLPFQSSTEKGNINAEMRSVLVD 133
+ DP IF + E F D + FQ ++ + MR +L
Sbjct: 5 NNPPSGLLDPTLCEDR---IFYNILEIEPRFLTSDSVFGTFQQ-----SLTSHMRKLLGT 56
Query: 134 WMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLS 193
WM V + + L + LA+ L+D L S+ + Q G+ + V+SK P S
Sbjct: 57 WMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTS 116
Query: 194 DLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLS----YRFLRRYAR 237
L Y + ++S Q+L D E +L+ + + L+ L +
Sbjct: 117 SLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVG 164
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 158 bits (402), Expect = 2e-48
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 78 DKETWEDPLQVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMV 136
+ + + D ++ + + E E + + + ++ R VL WM
Sbjct: 5 EFQGFLDSSLLN--EEDCRQMIYRSEREHDARMVGVNVDQ-----HFTSQYRKVLTTWMF 57
Query: 137 EVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLE 196
V + ++ LAV L+D R N Q A A+ ++ K +P + + L
Sbjct: 58 CVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLA 117
Query: 197 YICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
Y+C + L +E+K + + + LS + I
Sbjct: 118 YLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHI 159
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 53.0 bits (127), Expect = 1e-08
Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 125 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 184
A R ++ +V L+++TL + + + + GA +F++ K
Sbjct: 38 ARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKV 97
Query: 185 DDRIP----------PQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRR 234
++ L+D+++ +++ +E L+ I FDL + Y+FL +
Sbjct: 98 EETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLK 157
Query: 235 YAR 237
YA+
Sbjct: 158 YAK 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 3e-06
Identities = 45/256 (17%), Positives = 87/256 (33%), Gaps = 50/256 (19%)
Query: 15 DLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHF-DKEIQLEDKLEVTGPPSD 73
+T+ + + L T++ + KSL+ + D Q + +T P
Sbjct: 274 FKQVTDF----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 74 VDDF------DKETWEDPLQVSCYAMH-----IFEYLKSREAEFQIKDYLPFQSSTEKGN 122
+ TW++ V+C + L+ E F S +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---H 386
Query: 123 INAEMRSVLVDWMVEVQETFELNHETLY---LAVK--------LVDLYLGKVVCSRLNL- 170
I + S++ W ++ + L+ L K + +YL ++ N
Sbjct: 387 IPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLENEY 443
Query: 171 ----QLLGATAIFVSSKFDDRIPPQLSDLEYICSHT-YSIQDLKDME-IKLVTAIGFDLG 224
++ I + DD IPP L Y SH + +++++ E + L + D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPERMTLFRMVFLDF- 500
Query: 225 IPLSYRFLRRYARIRY 240
RFL +IR+
Sbjct: 501 -----RFLE--QKIRH 509
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 125 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVD-LYLGKVVCSRLNLQLLGATAIFVSSK 183
++ + + L L A+ L+ L K +L+ L AT I++S K
Sbjct: 25 SKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCK 84
Query: 184 FDDRIPPQLSDLEYICSHTYS------IQDLKDMEIKLVTAIGFDLGIPLSYRFLRRY 235
++ P + + + +S ++ ++E ++++ + L + Y L +
Sbjct: 85 VEEC-PVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQA 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-04
Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 83/218 (38%)
Query: 43 VSEKKEKSLIEHFDKEIQLEDKLE-----------VTGPPSDVDDF-----------DKE 80
+++++ + + + + ++E V+GPP + +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 81 TWEDP------------LQVSC-YAMH----------IFEYLKSREAEFQIKD-----YL 112
P L V+ + H I + L F KD Y
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 113 PFQSS---TEKGNINAEMRSVL----VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVC 165
F S G+I+ + + V W Q F+ H ++D G
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ--FKATH--------ILDFGPGGA-- 509
Query: 166 SRL------NLQLLGATAIFVSSKFDDRIPPQLSDLEY 197
S L N G I + D D +Y
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVAGT-LDIN-----PDDDY 541
Score = 38.1 bits (88), Expect = 0.002
Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 61/189 (32%)
Query: 81 TWEDPLQVSCYAMHIFEY--LKSREAEFQIKDYLP--FQSSTEKGN-INAEMRSV--LVD 133
+WE A+ + + ++ EA + P + S E + + M S+ L
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 134 WMVE--VQETFELN-----HETLYLAVK-----LV------DLYLGKVVCSRLNLQLLGA 175
V+ V +T N + + +++ LV LY LNL L A
Sbjct: 347 EQVQDYVNKT---NSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-------GLNLTLRKA 396
Query: 176 TAIFVSSKFD-DRIP-----PQLSDLEY--ICS--HT-Y-------SIQDLKDMEIKLVT 217
A S D RIP + S + + S H+ +DL +
Sbjct: 397 KA---PSGLDQSRIPFSERKLKFS-NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 218 AIGFDLGIP 226
D+ IP
Sbjct: 453 K---DIQIP 458
Score = 33.9 bits (77), Expect = 0.047
Identities = 34/226 (15%), Positives = 58/226 (25%), Gaps = 83/226 (36%)
Query: 9 YVSALEDLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDK---- 64
YVS+L + VL + F+ LE
Sbjct: 67 YVSSLVE----------PSKVGQFDQVLNL------------CLTEFENCY-LEGNDIHA 103
Query: 65 LEVTGPPSDVDDFDKETWEDPLQVSCY--AMHI-------------FEYLKSREAEFQIK 109
L + D + + Y A + F + A+
Sbjct: 104 LAAKLLQEN----DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--- 156
Query: 110 DYLPF--QSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSR 167
F Q GN + D+ E+++ ++ Y + + DL + S
Sbjct: 157 -VAIFGGQ-----GNTD--------DYFEELRDLYQT-----YHVL-VGDL----IKFSA 192
Query: 168 LNLQLLGATAIFVSSKFDDRI--------PPQLSDLEYICSHTYSI 205
L L T + F + P D +Y+ S S
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 36.6 bits (84), Expect = 0.004
Identities = 16/144 (11%), Positives = 42/144 (29%), Gaps = 11/144 (7%)
Query: 102 REAEFQIKDYLPFQSSTEKGNINAE---MRSVLVDWMVEVQETFELN--HETLYLAVKLV 156
R+ + + E + ++E F+ + A
Sbjct: 28 RKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYF 87
Query: 157 DLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDL-----EYICSHTYSIQDLKDM 211
+ + +++ T F++ K D+ E +++ + +
Sbjct: 88 KRFYLNNSVMEYHPRIIMLTCAFLACKVDE-FNVSSPQFVGNLRESPLGQEKALEQILEY 146
Query: 212 EIKLVTAIGFDLGIPLSYRFLRRY 235
E+ L+ + F L + YR +
Sbjct: 147 ELLLIQQLNFHLIVHNPYRPFEGF 170
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 35.6 bits (81), Expect = 0.010
Identities = 16/128 (12%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 125 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 184
R + + ++ + ++ T+ A+ + + +R + A+F+++K
Sbjct: 35 LSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKV 94
Query: 185 DD---------------RIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSY 229
++ P + ++ +QDL +E ++ +GF+L I +
Sbjct: 95 EEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPH 154
Query: 230 RFLRRYAR 237
+ + +
Sbjct: 155 THVVKCTQ 162
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 34.7 bits (79), Expect = 0.018
Identities = 15/128 (11%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 125 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 184
R + + E+ + ++ T+ A+ + + ++ N ++ +TA+F+++K
Sbjct: 28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKV 87
Query: 185 DD---------------RIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSY 229
++ P + ++ ++L +E ++ +GF++ I +
Sbjct: 88 EEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPH 147
Query: 230 RFLRRYAR 237
+ + +
Sbjct: 148 TDVVKCTQ 155
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase,
signaling protein,transfera cycle complex; HET: MES AGS;
2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Length = 293
Score = 30.3 bits (67), Expect = 0.48
Identities = 12/114 (10%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 131 LVDWMVEVQETFELNHETLYLAVKLVDLY---LGKVVCSRLNLQLLGATAIFVSSKFDDR 187
+ ++ + + + L H L ++ +DL + L TA V++K
Sbjct: 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCD 136
Query: 188 IPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLS----YRFLRRYAR 237
+ + +L +E + + + + ++ +
Sbjct: 137 SFSTNAHYAKVGG--VRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKK 188
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 30.0 bits (67), Expect = 0.51
Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 127 MRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDD 186
++ + + + E +L + + A + + ++ L+ T +F++SK ++
Sbjct: 42 LQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 101
Query: 187 RIPPQLSDLEYICSHTYSI--------------QDLKDMEIKLVTAIGFDLGIPLSYRFL 232
+ L + + + E L+ + L + YR L
Sbjct: 102 FGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPL 161
Query: 233 RRY 235
+Y
Sbjct: 162 LQY 164
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.69
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 24 KKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEI-----QLEDKLE 66
K E Q R L+ S+ E+ E K++ + +++E
Sbjct: 89 KWREEQRKR---LQELDAA-SKVMEQEWREKAKKDLEEWNQRQSEQVE 132
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 29.3 bits (67), Expect = 0.98
Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KSLIE-HFDKEIQLEDKLEVTG 69
K +E +FD ++E +++ T
Sbjct: 59 KRSLEDYFDTSYEIEHQIQGTN 80
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 29.0 bits (66), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KSLIE-HFDKEIQLEDKLEVTG 69
KS +E HFD +LE + G
Sbjct: 71 KSALEDHFDIAYELEATMAARG 92
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 28.2 bits (64), Expect = 2.1
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KSLIE-HFDKEIQLEDKLEVTG 69
K+ IE HFD +LE LE
Sbjct: 65 KNSIENHFDTSFELEAMLEKRV 86
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 28.0 bits (62), Expect = 3.0
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 48 EKSLIEHFDKEIQLEDKLEVTGPPSDVDDFD------KETWEDPLQVSCYAMHIFEYLKS 101
E ++ FDK Q+ K T ++ FD K E ++ C A + + +
Sbjct: 458 ELTINSGFDKNKQIGPK---TQNFEEMKSFDEFMKAYKAQMEYFVKHMCCADNCIDIAHA 514
Query: 102 REAEFQIKDYLPFQSSTEKGNINAEM 127
A LPF SS I
Sbjct: 515 ERA------PLPFLSSMVDNCIGKGK 534
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 27.9 bits (63), Expect = 3.2
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KSLIE-HFDKEIQLEDKLEVTG 69
K+ + HF++ +LE+ L G
Sbjct: 69 KAGVLAHFERSSELEETLMERG 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 4.6
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 48 EKSLIEHFDKEIQLEDKLEVTGPPS 72
EK ++ +L+ L++ S
Sbjct: 18 EKQALK------KLQASLKLYADDS 36
Score = 26.5 bits (57), Expect = 6.8
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 99 LKSREAEFQIKDYLPFQSSTEKGNINAEM 127
LK +A +K Y S I A M
Sbjct: 22 LKKLQA--SLKLYAD--DSAPALAIKATM 46
>3u9z_C Ciboulot, isoform A; contractIle protein, protein binding; HET:
ADP; 2.09A {Drosophila melanogaster} PDB: 1sqk_B*
Length = 58
Score = 24.8 bits (53), Expect = 7.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 11 SALEDLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIE 53
S LE + S K A +Q K +L + + +EK ++S+ E
Sbjct: 20 SQLEGFD--KSKLKNASTQ--EKIILPTAEDVAAEKTQQSIFE 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.372
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,530,295
Number of extensions: 201033
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 31
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)