RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7892
(240 letters)
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 121 bits (306), Expect = 6e-36
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 95 IFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVK 154
+ LK RE L ++ TE + + R++L+ WM + E+FEL+ L+V
Sbjct: 2 VLNNLKLRELLLPKFTSL-WEIQTE---VTVDNRTILLTWMHLLCESFELDKSVFPLSVS 57
Query: 155 LVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIK 214
++D YL K ++ LQ +GA + + SK P +S L Y+ ++ +L + E
Sbjct: 58 ILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKD 117
Query: 215 LVTAIGFDL 223
++ A+ +D
Sbjct: 118 ILEALKWDT 126
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 115 bits (290), Expect = 1e-33
Identities = 47/130 (36%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 95 IFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAV 153
I YL+ E + + K Y+ Q +I MR++LVDW+VEV E ++L +ETL+LAV
Sbjct: 2 IHTYLREMEVKCKPKVGYMKKQP-----DITNSMRAILVDWLVEVGEEYKLQNETLHLAV 56
Query: 154 KLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEI 213
+D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+ + + ME
Sbjct: 57 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 116
Query: 214 KLVTAIGFDL 223
++ + FDL
Sbjct: 117 LVLKVLTFDL 126
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 112 bits (282), Expect = 3e-32
Identities = 34/142 (23%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 84 DPLQVSCYAMHIFEYLKSREAEFQI-KDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETF 142
P+ +++ + ++E + + +L + +MR++L+DW++EV E +
Sbjct: 3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-----LLQPKMRAILLDWLMEVCEVY 57
Query: 143 ELNHETLYLAVKLVDLYL-GKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSH 201
+L+ ET YLA D Y+ + + LQL+G +++F+++K ++ PP+L Y+
Sbjct: 58 KLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG 117
Query: 202 TYSIQDLKDMEIKLVTAIGFDL 223
S ++ ME+ ++ A+ + L
Sbjct: 118 ACSGDEILTMELMIMKALKWRL 139
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 111 bits (278), Expect = 1e-31
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 95 IFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVK 154
IF + E F D + + + MR +L WM V + + L + LA+
Sbjct: 6 IFYNILEIEPRFLTSDSVFGTFQQS---LTSHMRKLLGTWMFSVCQEYNLEPNVVALALN 62
Query: 155 LVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIK 214
L+D L S+ + Q G+ + V+SK P S L Y + ++S Q+L D E +
Sbjct: 63 LLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKE 122
Query: 215 LVTAIGFDL 223
L+ + +
Sbjct: 123 LLEKLAWRT 131
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 106 bits (266), Expect = 7e-30
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 6/131 (4%)
Query: 95 IFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAV 153
+ + E E + + ++ R VL WM V + ++ LAV
Sbjct: 15 CRQMIYRSEREHDARMVGVNVDQH-----FTSQYRKVLTTWMFCVCKDLRQDNNVFPLAV 69
Query: 154 KLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEI 213
L+D R N Q A A+ ++ K +P + + L Y+C + L +E+
Sbjct: 70 ALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEV 129
Query: 214 KLVTAIGFDLG 224
K + + +
Sbjct: 130 KSLDTLSWVAD 140
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 78.5 bits (193), Expect = 5e-19
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 123 INAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSS 182
A R ++ +V L+++TL + + + + GA +F++
Sbjct: 32 TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAG 91
Query: 183 KFDDR----------IPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGI 225
K ++ L+D+++ +++ +E L+ I FDL +
Sbjct: 92 KVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQV 144
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 68.1 bits (166), Expect = 3e-15
Identities = 14/115 (12%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 126 EMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFD 185
R + + E+ + ++ T+ A+ + + ++ N ++ +TA+F+++K +
Sbjct: 29 SCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88
Query: 186 DRIPPQLSDLEYIC---------------SHTYSIQDLKDMEIKLVTAIGFDLGI 225
++ ++ ++ ++L +E ++ +GF++ I
Sbjct: 89 EQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI 143
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 62.7 bits (152), Expect = 4e-13
Identities = 17/153 (11%), Positives = 46/153 (30%), Gaps = 13/153 (8%)
Query: 80 ETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQ 139
+ E ++ A F + D + + E + ++E
Sbjct: 4 SSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEE-----MTLCKYYEKRLLEFC 58
Query: 140 ETFE--LNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDL-- 195
F+ + + A + + +++ T F++ K D+
Sbjct: 59 SVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE-FNVSSPQFVG 117
Query: 196 ---EYICSHTYSIQDLKDMEIKLVTAIGFDLGI 225
E +++ + + E+ L+ + F L +
Sbjct: 118 NLRESPLGQEKALEQILEYELLLIQQLNFHLIV 150
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 27.0 bits (59), Expect = 1.7
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 35 VLKSKQTTVSEKKEKSLIEHFDKEIQLEDKLEVTGPPSDVDDF-------DKETWEDP 85
V SK + +K L++ E L K G S+VD+ D W DP
Sbjct: 139 VTVSKIFILGSSYQKELLKQIPAE-NLPVKF---GGKSEVDESKGGLYLSDIGPWRDP 192
>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 244
Score = 25.7 bits (55), Expect = 5.2
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 207 DLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
+++D E+++ T +G G+ L +R+YAR+
Sbjct: 214 EIRDYELQVPTGVG--HGMTLDEDKVRQYARV 243
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.372
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,767
Number of extensions: 38430
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 19
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)