Query psy7893
Match_columns 691
No_of_seqs 246 out of 1594
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:31:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0681|consensus 100.0 5E-102 1E-106 831.4 42.8 616 3-664 2-645 (645)
2 PTZ00452 actin; Provisional 100.0 3.8E-80 8.3E-85 676.0 33.0 367 27-659 5-375 (375)
3 PTZ00466 actin-like protein; P 100.0 5.8E-80 1.3E-84 675.4 33.3 373 18-659 5-380 (380)
4 KOG0676|consensus 100.0 1.5E-79 3.3E-84 655.8 25.8 365 24-659 4-372 (372)
5 PTZ00281 actin; Provisional 100.0 1E-77 2.2E-82 657.7 31.5 369 25-659 4-376 (376)
6 PTZ00004 actin-2; Provisional 100.0 1.2E-75 2.5E-80 642.0 32.1 370 25-659 4-378 (378)
7 PTZ00280 Actin-related protein 100.0 4.4E-73 9.4E-78 628.7 34.4 383 27-659 4-410 (414)
8 KOG0680|consensus 100.0 1.1E-71 2.4E-76 567.3 26.0 395 27-659 3-399 (400)
9 KOG0677|consensus 100.0 1.2E-71 2.6E-76 552.4 22.4 366 25-656 2-385 (389)
10 PF00022 Actin: Actin; InterP 100.0 2.8E-70 6.1E-75 601.4 28.4 366 25-659 2-393 (393)
11 KOG0679|consensus 100.0 2.7E-69 5.8E-74 562.0 32.6 395 24-658 8-425 (426)
12 smart00268 ACTIN Actin. ACTIN 100.0 1.7E-68 3.7E-73 584.0 31.5 369 28-659 2-373 (373)
13 cd00012 ACTIN Actin; An ubiqui 100.0 1.8E-66 4E-71 567.7 31.7 365 29-657 1-371 (371)
14 COG5277 Actin and related prot 100.0 1.1E-65 2.4E-70 567.1 31.9 384 27-659 6-444 (444)
15 KOG0678|consensus 100.0 4.7E-53 1E-57 431.4 16.6 376 28-656 5-407 (415)
16 PRK13930 rod shape-determining 100.0 1.1E-34 2.5E-39 312.7 20.0 208 29-266 10-221 (335)
17 PRK13927 rod shape-determining 100.0 6.1E-34 1.3E-38 307.1 18.7 205 29-265 7-216 (334)
18 KOG0797|consensus 100.0 1.2E-32 2.6E-37 295.3 21.2 159 84-264 178-352 (618)
19 TIGR00904 mreB cell shape dete 100.0 1.1E-31 2.4E-36 289.7 22.0 210 30-266 5-219 (333)
20 PRK13929 rod-share determining 100.0 1.1E-31 2.5E-36 289.9 19.2 206 29-266 6-219 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.4E-28 3.1E-33 262.6 20.6 206 29-264 3-212 (326)
22 PRK13928 rod shape-determining 100.0 6.2E-28 1.3E-32 260.9 18.1 205 30-264 6-214 (336)
23 COG1077 MreB Actin-like ATPase 99.9 2.1E-23 4.5E-28 216.5 17.9 211 28-265 7-221 (342)
24 TIGR02529 EutJ ethanolamine ut 99.6 2E-13 4.3E-18 141.1 22.5 120 88-237 28-151 (239)
25 PRK15080 ethanolamine utilizat 99.5 2.3E-12 5.1E-17 135.3 24.5 151 27-237 24-178 (267)
26 CHL00094 dnaK heat shock prote 99.2 1.2E-09 2.6E-14 127.8 24.2 184 28-240 3-238 (621)
27 TIGR01991 HscA Fe-S protein as 99.2 4.5E-10 9.8E-15 130.8 18.1 183 29-240 1-232 (599)
28 PTZ00400 DnaK-type molecular c 99.2 6.4E-10 1.4E-14 130.8 19.2 100 123-240 175-277 (663)
29 TIGR02350 prok_dnaK chaperone 99.2 4.2E-10 9E-15 131.1 17.1 100 124-240 132-234 (595)
30 PRK01433 hscA chaperone protei 99.2 9.6E-10 2.1E-14 127.6 20.0 119 99-240 119-244 (595)
31 PRK05183 hscA chaperone protei 99.1 3.9E-09 8.4E-14 123.3 22.0 183 28-240 20-252 (616)
32 PLN03184 chloroplast Hsp70; Pr 99.1 8.1E-09 1.8E-13 121.7 24.9 184 28-240 40-275 (673)
33 PTZ00186 heat shock 70 kDa pre 99.1 2.5E-09 5.4E-14 125.4 20.3 98 124-239 162-262 (657)
34 PRK00290 dnaK molecular chaper 99.1 5.3E-09 1.1E-13 122.7 22.5 99 124-240 135-236 (627)
35 PRK13411 molecular chaperone D 99.1 1.4E-09 3E-14 127.9 17.1 185 28-240 3-237 (653)
36 PTZ00009 heat shock 70 kDa pro 99.1 3.3E-09 7.1E-14 124.8 19.2 101 123-239 141-244 (653)
37 PRK13410 molecular chaperone D 99.1 3.3E-09 7.1E-14 124.8 19.0 99 124-240 137-238 (668)
38 PRK11678 putative chaperone; P 99.0 2.1E-08 4.4E-13 112.9 21.6 182 29-234 2-260 (450)
39 TIGR01174 ftsA cell division p 99.0 2.2E-08 4.8E-13 110.1 20.7 102 134-264 156-257 (371)
40 PF00012 HSP70: Hsp70 protein; 98.8 1.5E-07 3.2E-12 109.7 19.5 119 100-240 114-239 (602)
41 COG0849 ftsA Cell division ATP 98.7 5.9E-07 1.3E-11 99.5 19.6 91 145-263 173-263 (418)
42 PRK09472 ftsA cell division pr 98.7 1.6E-07 3.4E-12 105.2 13.9 101 134-263 164-264 (420)
43 TIGR01175 pilM type IV pilus a 98.4 8.1E-05 1.8E-09 81.0 24.4 57 193-260 189-245 (348)
44 PF11104 PilM_2: Type IV pilus 98.0 0.00026 5.6E-09 77.1 19.1 44 192-237 180-223 (340)
45 COG0443 DnaK Molecular chapero 98.0 0.00015 3.3E-09 84.3 16.5 190 27-240 5-223 (579)
46 TIGR03739 PRTRC_D PRTRC system 97.6 0.00029 6.2E-09 76.2 10.6 189 32-241 2-216 (320)
47 PRK10719 eutA reactivating fac 97.5 0.00046 9.9E-09 77.1 9.8 179 24-232 3-184 (475)
48 PRK13917 plasmid segregation p 97.4 0.0058 1.3E-07 66.8 16.9 212 28-257 3-248 (344)
49 PF06277 EutA: Ethanolamine ut 96.8 0.0075 1.6E-07 67.6 10.6 171 29-229 5-178 (473)
50 PF06406 StbA: StbA protein; 96.7 0.015 3.2E-07 63.0 11.9 182 30-239 3-212 (318)
51 KOG0100|consensus 96.6 0.12 2.7E-06 56.4 17.6 97 124-237 174-273 (663)
52 COG4972 PilM Tfp pilus assembl 96.2 0.3 6.4E-06 52.5 17.8 67 194-272 195-261 (354)
53 KOG0104|consensus 95.2 0.5 1.1E-05 55.4 15.9 103 123-240 159-276 (902)
54 KOG0101|consensus 94.9 0.33 7.1E-06 56.5 13.3 98 124-237 145-245 (620)
55 COG4820 EutJ Ethanolamine util 94.4 0.03 6.5E-07 55.9 3.0 143 27-230 29-176 (277)
56 PRK10854 exopolyphosphatase; P 93.2 1 2.2E-05 52.1 13.1 160 26-232 10-175 (513)
57 TIGR03706 exo_poly_only exopol 93.2 0.99 2.2E-05 48.4 12.2 89 123-233 73-164 (300)
58 PRK11031 guanosine pentaphosph 92.9 1.4 3.1E-05 50.7 13.7 90 124-233 80-171 (496)
59 COG4819 EutA Ethanolamine util 92.6 0.78 1.7E-05 49.3 10.0 178 23-229 1-180 (473)
60 COG0248 GppA Exopolyphosphatas 92.1 0.79 1.7E-05 52.6 10.2 159 28-233 4-168 (492)
61 KOG0103|consensus 87.5 9.2 0.0002 45.0 13.7 104 122-240 137-247 (727)
62 TIGR03286 methan_mark_15 putat 85.2 0.39 8.5E-06 53.3 1.3 67 556-632 335-402 (404)
63 PF02541 Ppx-GppA: Ppx/GppA ph 85.0 3.2 6.9E-05 44.0 8.1 91 123-233 59-151 (285)
64 TIGR00241 CoA_E_activ CoA-subs 83.9 0.92 2E-05 47.2 3.3 43 580-630 206-248 (248)
65 PRK13317 pantothenate kinase; 83.3 0.98 2.1E-05 48.1 3.3 72 556-632 200-273 (277)
66 TIGR02261 benz_CoA_red_D benzo 82.7 0.8 1.7E-05 48.3 2.3 50 579-631 213-262 (262)
67 TIGR02259 benz_CoA_red_A benzo 82.4 1 2.2E-05 50.0 3.0 52 577-631 381-432 (432)
68 PF08841 DDR: Diol dehydratase 82.3 9.7 0.00021 40.5 9.9 103 135-265 94-198 (332)
69 TIGR03123 one_C_unchar_1 proba 82.1 18 0.00039 39.3 12.4 24 192-215 128-151 (318)
70 PF14450 FtsA: Cell division p 80.1 7.7 0.00017 35.7 7.7 59 195-264 2-71 (120)
71 TIGR03192 benz_CoA_bzdQ benzoy 79.7 0.87 1.9E-05 48.7 1.3 67 556-632 220-287 (293)
72 TIGR00241 CoA_E_activ CoA-subs 73.4 64 0.0014 33.4 13.2 46 192-237 91-137 (248)
73 COG1924 Activator of 2-hydroxy 70.6 2.5 5.5E-05 46.4 2.0 45 581-633 346-390 (396)
74 PRK13324 pantothenate kinase; 68.6 1.3E+02 0.0029 31.6 14.3 18 29-46 2-19 (258)
75 PRK03011 butyrate kinase; Prov 67.6 81 0.0018 34.9 13.0 46 579-628 297-342 (358)
76 PRK13321 pantothenate kinase; 66.7 84 0.0018 32.8 12.4 18 30-47 3-20 (256)
77 PF01968 Hydantoinase_A: Hydan 64.5 8.6 0.00019 41.1 4.6 24 192-215 77-100 (290)
78 PF01869 BcrAD_BadFG: BadF/Bad 63.5 1.2 2.5E-05 46.9 -2.3 66 558-631 206-271 (271)
79 PRK13318 pantothenate kinase; 61.2 2E+02 0.0044 29.9 14.1 18 29-46 2-19 (258)
80 COG4820 EutJ Ethanolamine util 56.2 15 0.00033 37.2 4.2 56 558-628 214-269 (277)
81 COG1548 Predicted transcriptio 55.5 8.1 0.00017 40.5 2.3 22 192-213 130-151 (330)
82 smart00842 FtsA Cell division 51.5 58 0.0013 32.1 7.7 24 90-113 36-59 (187)
83 PF03309 Pan_kinase: Type III 51.5 2.3E+02 0.0051 28.4 12.2 18 30-47 2-19 (206)
84 PRK13917 plasmid segregation p 50.5 9.3 0.0002 41.9 2.0 44 578-632 292-335 (344)
85 PF11239 DUF3040: Protein of u 50.3 12 0.00026 32.2 2.3 25 494-518 4-28 (82)
86 COG1521 Pantothenate kinase ty 49.5 1.6E+02 0.0034 31.1 10.7 19 29-47 2-20 (251)
87 TIGR00744 ROK_glcA_fam ROK fam 47.7 3.6E+02 0.0078 28.6 13.7 68 558-632 239-309 (318)
88 PF08735 DUF1786: Putative pyr 43.9 2.1E+02 0.0046 30.2 10.5 82 138-237 129-213 (254)
89 TIGR03367 queuosine_QueD queuo 42.5 38 0.00082 29.8 4.2 50 92-150 42-91 (92)
90 TIGR00671 baf pantothenate kin 41.9 3E+02 0.0065 28.6 11.5 18 30-47 2-19 (243)
91 PF14450 FtsA: Cell division p 41.2 24 0.00053 32.3 2.9 57 29-111 1-57 (120)
92 PRK05082 N-acetylmannosamine k 41.0 35 0.00077 36.0 4.5 68 557-632 220-287 (291)
93 TIGR03286 methan_mark_15 putat 36.3 3.6E+02 0.0079 30.4 11.5 44 192-235 241-286 (404)
94 PRK13310 N-acetyl-D-glucosamin 35.6 45 0.00097 35.5 4.3 68 558-632 233-301 (303)
95 KOG0102|consensus 32.7 1.2E+02 0.0027 35.2 7.2 98 124-239 162-262 (640)
96 PRK13320 pantothenate kinase; 32.4 5.9E+02 0.013 26.5 12.3 19 29-47 4-22 (244)
97 PRK09698 D-allose kinase; Prov 32.4 56 0.0012 34.7 4.4 68 558-632 224-295 (302)
98 COG4962 CpaF Flp pilus assembl 30.3 3.8E+02 0.0083 29.6 10.2 102 499-609 90-201 (355)
99 TIGR03739 PRTRC_D PRTRC system 30.0 37 0.00079 36.7 2.5 45 578-631 274-318 (320)
100 PRK09557 fructokinase; Reviewe 29.4 68 0.0015 34.1 4.4 67 558-631 232-299 (301)
101 PRK13326 pantothenate kinase; 27.5 7.5E+02 0.016 26.1 13.2 19 29-47 8-26 (262)
102 PF06406 StbA: StbA protein; 24.8 32 0.00069 37.2 0.9 42 578-626 273-314 (318)
No 1
>KOG0681|consensus
Probab=100.00 E-value=5.5e-102 Score=831.40 Aligned_cols=616 Identities=39% Similarity=0.666 Sum_probs=508.9
Q ss_pred ceecccCCCCCCCcc--ccccccCCCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccc
Q psy7893 3 MKVLKDTKILPDPYY--EYLDELRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNI 80 (691)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~ 80 (691)
+..++|+-.-|+|.. +|. ...||||||||+.|||||+|+..|+++|+|++.++++++... ...+||++....
T Consensus 2 ~~~~r~p~a~p~p~~~q~~~-----n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~-s~t~vgnd~~~~ 75 (645)
T KOG0681|consen 2 YLELRDPRAFPDPNREQSYS-----NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGA-SVTLVGNDILNF 75 (645)
T ss_pred eeeccCccccCCchhhhccc-----CCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccccc-ccccccchhhhh
Confidence 456677733478773 333 166999999999999999999999999999999999765221 123899998887
Q ss_pred cccccEEecccccCcccCHHHHHHHHHHHHhhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhh
Q psy7893 81 EAVRFQLKTQFDKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDS 160 (691)
Q Consensus 81 ~~~~~~l~~Pi~~G~I~nwd~~e~iw~~~f~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~a 160 (691)
.+.+...++||++.+|+||+.+|.|+||+|.+||+++++ .+|||++||+.+||...|..|+|+|||+||||+|.++.++
T Consensus 76 ~~~Rs~~rSPFd~nVvtNwel~E~ilDY~F~~LG~~~~~-idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDs 154 (645)
T KOG0681|consen 76 QGVRSSPRSPFDRNVVTNWELMEQILDYIFGKLGVDGQG-IDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDS 154 (645)
T ss_pred hhhhccCCCCCcCCccccHHHHHHHHHHHHHhcCCCccC-CCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhh
Confidence 776678899999999999999999999999999999875 6999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 161 LFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 161 lla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
++|+|.+- +. ....+|+||++|++.|||+||.+|..+...++|+++||.+.+.||.+|++.+
T Consensus 155 lfS~~hN~-----~~-------------~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 155 LFSFYHNY-----GK-------------SSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred HHHHhhcc-----Cc-------------ccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhcc
Confidence 99999761 21 1125899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHheeeeccHHHHHHhhhhcccccccccccccCcc-CCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy7893 241 YPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYA-VPVPNLTTEQQKDRRKELAKKLVEMNA 319 (691)
Q Consensus 241 ~~~~~~~~~~~~~e~IKe~~cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (691)
||.|++.++...++.+++.+||||.||.+|+..|..++.++.++.++|+||+ +..+. .....|++|++ +|++++++
T Consensus 217 yp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~-e~~l~Ae~kqe--kRlq~~a~ 293 (645)
T KOG0681|consen 217 YPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEV-ELALTAEKKQE--KRLQEQAA 293 (645)
T ss_pred CccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchh-hhhccHHHHHH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 55553 12235555555 78888888
Q ss_pred HHHHhhhhhh------HHHHHHHHHHHHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCC
Q psy7893 320 KKREERLVDD------ERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGE 393 (691)
Q Consensus 320 ~kr~~~~~~~------e~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~ 393 (691)
-||.+|+.+. |++|...-.++. +.. +..++.+++.-..+..+.... .-.+|.+++++..+.+.
T Consensus 294 lkrv~k~~~re~~redeqql~~~~kaq~--e~e--~~~D~~q~~~ll~v~~eL~~d-------~lk~k~~qr~lkas~da 362 (645)
T KOG0681|consen 294 LKRVEKINARENRREDEQQLESYNKAQG--EQE--SNLDLEQKFPLLNVPAELDED-------QLKEKKKQRILKASTDA 362 (645)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHhhh--chh--cCccHhhhchhhcchhhhCHH-------HHHHHHHHHHHHhhhhh
Confidence 8888888776 444444322221 111 122244444444443111111 11234455555555443
Q ss_pred CCCchh-h--hhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-----
Q psy7893 394 DLTEEP-K--AKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARK----- 465 (691)
Q Consensus 394 ~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~----- 465 (691)
++-+.. | |++.| +-. .++.++.+|++++|.+++.++++++++++.|+++++|+|+++|.|||.++.+|.+
T Consensus 363 r~rar~eke~Er~~k-~~~-~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rr 440 (645)
T KOG0681|consen 363 RLRARVEKELERLNK-LEE-EREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRR 440 (645)
T ss_pred hccccccchHHHhhc-ccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHH
Confidence 332211 1 22111 111 1237899999999999999999999999999999999999999999999999887
Q ss_pred ---ccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCcccccc---cc-----ccCCCCCcEEEe
Q psy7893 466 ---EKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQ---EQ-----ELSPKEANQLHI 534 (691)
Q Consensus 466 ---~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~~~~~~~---~~-----~~~~~~~~~i~l 534 (691)
...+|.||+.|+||++|..+. +..+.+.+.+..+++.|.+|||.|+...+ +. +.-+.+.+++++
T Consensus 441 k~~~~t~D~fg~~Dedw~vYe~le-----e~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~ 515 (645)
T KOG0681|consen 441 KRKEATPDNFGARDEDWDVYEDLE-----EENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHL 515 (645)
T ss_pred hcccCCccccccchhhHHHHHHhh-----hhhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhh
Confidence 234788999999999995542 23344567899999999999999999442 11 112477899999
Q ss_pred cceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEE
Q psy7893 535 GVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVS 614 (691)
Q Consensus 535 ~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~ 614 (691)
|+||++||||+|+|++||.||+||.|++..+|.++|.+.+..|.+||+||||+|++||+++||.+||+.++|.+++|.|+
T Consensus 516 nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~ 595 (645)
T KOG0681|consen 516 NVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVV 595 (645)
T ss_pred cceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCCCCCCc
Q psy7893 615 LAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPCSNKFE 664 (691)
Q Consensus 615 ~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~~n~~~ 664 (691)
.+.||.++||+||+.||...+|...|+||+||+|+|++|+++|++||++|
T Consensus 596 rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~~~ 645 (645)
T KOG0681|consen 596 RASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNIYY 645 (645)
T ss_pred ecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999986
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3.8e-80 Score=676.02 Aligned_cols=367 Identities=22% Similarity=0.385 Sum_probs=327.9
Q ss_pred CceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCC---cCCcceeccccccccccccEEecccccCcccCHHHHH
Q psy7893 27 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK---KDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQE 103 (691)
Q Consensus 27 ~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~---~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e 103 (691)
.++||||+||+++|+||||++.|++++||+||+++...+. .....++|+++....+ .+.+++||++|+|.|||.+|
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~-~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRG-VLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhcccc-CcEEcccCcCCEEcCHHHHH
Confidence 4589999999999999999999999999999998765311 1123589999866444 38899999999999999999
Q ss_pred HHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccc
Q psy7893 104 QIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQ 182 (691)
Q Consensus 104 ~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~ 182 (691)
.+|+|+| +.|+++|. +||+|+||++++++..|++++|+|||.|++|+++++.+++||+|++ |+
T Consensus 84 ~iw~~~f~~~l~v~p~---~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~------g~------- 147 (375)
T PTZ00452 84 IIWHHAFYNELCMSPE---DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTS------GK------- 147 (375)
T ss_pred HHHHHHHHhhcCCCcc---cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHC------CC-------
Confidence 9999998 57899887 8999999999999999999999999999999999999999999999 98
Q ss_pred ccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHhee
Q psy7893 183 VYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGF 262 (691)
Q Consensus 183 ~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cy 262 (691)
+||||||+|++.|+|+||++|++++++++|+++||+++|+||+++|..++..+.+.....++++|||++||
T Consensus 148 ---------~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~ 218 (375)
T PTZ00452 148 ---------TIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCY 218 (375)
T ss_pred ---------ceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998876555444445679999999999
Q ss_pred eeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy7893 263 VATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREI 342 (691)
Q Consensus 263 va~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~~~~ 342 (691)
|+.||.+++..+..
T Consensus 219 v~~d~~~e~~~~~~------------------------------------------------------------------ 232 (375)
T PTZ00452 219 TALDPQDEKRIYKE------------------------------------------------------------------ 232 (375)
T ss_pred ccCcHHHHHHHhhc------------------------------------------------------------------
Confidence 99887654321000
Q ss_pred HhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHHHHH
Q psy7893 343 VELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIE 422 (691)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (691)
T Consensus 233 -------------------------------------------------------------------------------- 232 (375)
T PTZ00452 233 -------------------------------------------------------------------------------- 232 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHH
Q psy7893 423 TKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLI 502 (691)
Q Consensus 423 ~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~l~ 502 (691)
.+ .
T Consensus 233 ----------------------------------------------~~--~----------------------------- 235 (375)
T PTZ00452 233 ----------------------------------------------SN--S----------------------------- 235 (375)
T ss_pred ----------------------------------------------cC--C-----------------------------
Confidence 00 0
Q ss_pred HHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhhcCEE
Q psy7893 503 ELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIF 582 (691)
Q Consensus 503 ~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~~nI~ 582 (691)
....|.+|||+.|.++.|||.|||+||+|+++|.+..||+++|.++|.+||.|+|+.|++||+
T Consensus 236 -----------------~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIv 298 (375)
T PTZ00452 236 -----------------QDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIV 298 (375)
T ss_pred -----------------cCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEE
Confidence 001255677999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCC
Q psy7893 583 VTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 583 LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~ 659 (691)
||||+|+||||.+||++||+.++|...+++|..+.++.++||+|||+||++++|+++||||+||+|+|++++++||+
T Consensus 299 L~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 299 LSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred EecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999985
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=5.8e-80 Score=675.43 Aligned_cols=373 Identities=21% Similarity=0.396 Sum_probs=331.8
Q ss_pred ccccccCCCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCC---CcCCcceeccccccccccccEEecccccC
Q psy7893 18 EYLDELRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKN 94 (691)
Q Consensus 18 ~~~~~~~~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~---~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G 94 (691)
.+++.|. ..+||||+||+++||||||++.|++++||+||+++.... ......++|+++....+. +.+++||++|
T Consensus 5 ~~~~~~~--~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~-~~l~~Pi~~G 81 (380)
T PTZ00466 5 YAKQLYS--NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGL-LKVTYPINHG 81 (380)
T ss_pred hHHHhcc--CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcC-ceeCccccCC
Confidence 3455564 568999999999999999999999999999999876531 112245899998765543 7799999999
Q ss_pred cccCHHHHHHHHHHHHhhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCC
Q psy7893 95 VVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSG 174 (691)
Q Consensus 95 ~I~nwd~~e~iw~~~f~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G 174 (691)
+|+|||.+|.||+|+|++|+++|. ++|||+||+++++...|++++|+|||+|++|+++++.+++||+|++ |
T Consensus 82 ~v~dwd~~e~iw~~~f~~l~v~~~---~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~------g 152 (380)
T PTZ00466 82 IIENWNDMENIWIHVYNSMKINSE---EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSC------G 152 (380)
T ss_pred eECCHHHHHHHHHHHHhhcccCCc---cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhc------C
Confidence 999999999999999988999887 8999999999999999999999999999999999999999999999 9
Q ss_pred ccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHH
Q psy7893 175 VIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSE 254 (691)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e 254 (691)
+ +||||||+|++.|+|+||++|+++.++++++++||+++|+||+++|+.++..+.+..+..+++
T Consensus 153 ~----------------~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~ 216 (380)
T PTZ00466 153 K----------------TNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVK 216 (380)
T ss_pred C----------------ceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 8 999999999999999999999999999999999999999999999987755443344567899
Q ss_pred HHHHHheeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy7893 255 ELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLN 334 (691)
Q Consensus 255 ~IKe~~cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~ 334 (691)
+|||++|||+.||.+++...
T Consensus 217 ~iKe~~c~v~~d~~~e~~~~------------------------------------------------------------ 236 (380)
T PTZ00466 217 NMKENCCYVSFNMNKEKNSS------------------------------------------------------------ 236 (380)
T ss_pred HHHHhCeEecCChHHHHhhc------------------------------------------------------------
Confidence 99999999998876542110
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhH
Q psy7893 335 ELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEA 414 (691)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 414 (691)
.
T Consensus 237 -------------------------------------------------------~------------------------ 237 (380)
T PTZ00466 237 -------------------------------------------------------E------------------------ 237 (380)
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCCh
Q psy7893 415 EFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDS 494 (691)
Q Consensus 415 ~~~~~~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~ 494 (691)
..
T Consensus 238 ------------------------------------------------------~~------------------------ 239 (380)
T PTZ00466 238 ------------------------------------------------------KA------------------------ 239 (380)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHH
Q psy7893 495 EEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIA 574 (691)
Q Consensus 495 ~~~~~~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r 574 (691)
.....|.+|||..|.|+.|||+|||+||+|+++|.+..||+++|.++|.+||.|+|
T Consensus 240 ------------------------~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r 295 (380)
T PTZ00466 240 ------------------------LTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLR 295 (380)
T ss_pred ------------------------ccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhH
Confidence 00012456779999999999999999999999999999999999999999999999
Q ss_pred HHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhH
Q psy7893 575 QSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFF 654 (691)
Q Consensus 575 ~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~ 654 (691)
+.|++||+||||+|+||||.+||++||+++.|...+++|..+.+|.++||+|||+||++++|+++||||+||+|+|++++
T Consensus 296 ~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv 375 (380)
T PTZ00466 296 RTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVIL 375 (380)
T ss_pred HHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhh
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q psy7893 655 RVHPC 659 (691)
Q Consensus 655 ~~k~~ 659 (691)
++||+
T Consensus 376 ~rk~~ 380 (380)
T PTZ00466 376 HRKTF 380 (380)
T ss_pred eeecC
Confidence 99885
No 4
>KOG0676|consensus
Probab=100.00 E-value=1.5e-79 Score=655.85 Aligned_cols=365 Identities=27% Similarity=0.475 Sum_probs=329.3
Q ss_pred CCCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCC---CcCCcceeccccccccccccEEecccccCcccCHH
Q psy7893 24 RDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYD 100 (691)
Q Consensus 24 ~~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~---~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd 100 (691)
..+..+||||+||+.||+||||++.|+.+|||++|++++... ....+.+||+++...+ .+++||++|+|+|||
T Consensus 4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~----~l~~Pie~Giv~~wd 79 (372)
T KOG0676|consen 4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR----TLKYPIERGIVTDWD 79 (372)
T ss_pred cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc----cccCccccccccchH
Confidence 356789999999999999999999999999999999877542 1223458999987765 579999999999999
Q ss_pred HHHHHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccc
Q psy7893 101 IQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISC 179 (691)
Q Consensus 101 ~~e~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~ 179 (691)
+|+.||+|+| +.|++.|+ +||||+||+|++|+.+|++|+|+|||.|+||+++++.++++ |+. |+
T Consensus 80 ~me~iw~~if~~~L~~~Pe---e~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~------g~---- 144 (372)
T KOG0676|consen 80 DMEKIWHHLFYSELLVAPE---EHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YAS------GR---- 144 (372)
T ss_pred HHHHHHHHHHHHhhccCcc---cCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHc------CC----
Confidence 9999999999 57999998 79999999999999999999999999999999999888877 888 98
Q ss_pred cccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHH
Q psy7893 180 GYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD 259 (691)
Q Consensus 180 ~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~ 259 (691)
+||+|||+|++.||++||++|+++++++.++++||+++|+||+..|.+++..+......+++++|||+
T Consensus 145 ------------ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKek 212 (372)
T KOG0676|consen 145 ------------TTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEK 212 (372)
T ss_pred ------------eeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999998877777777778889999999
Q ss_pred heeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy7893 260 YGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLEL 339 (691)
Q Consensus 260 ~cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~ 339 (691)
+|||+.||.+|+.. ..
T Consensus 213 lCyvald~~~e~~~-~~--------------------------------------------------------------- 228 (372)
T KOG0676|consen 213 LCYVALDFEEEEET-AN--------------------------------------------------------------- 228 (372)
T ss_pred hcccccccchhhhc-cc---------------------------------------------------------------
Confidence 99999988766432 00
Q ss_pred HHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHH
Q psy7893 340 REIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAW 419 (691)
Q Consensus 340 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 419 (691)
. ..
T Consensus 229 ------~-------------------------------------------~~---------------------------- 231 (372)
T KOG0676|consen 229 ------T-------------------------------------------SS---------------------------- 231 (372)
T ss_pred ------c-------------------------------------------cc----------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHH
Q psy7893 420 LIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQE 499 (691)
Q Consensus 420 ~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~ 499 (691)
. + ..+
T Consensus 232 ---------~--------------------------------l------~~~---------------------------- 236 (372)
T KOG0676|consen 232 ---------S--------------------------------L------ESS---------------------------- 236 (372)
T ss_pred ---------c--------------------------------c------ccc----------------------------
Confidence 0 0 111
Q ss_pred HHHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhhc
Q psy7893 500 RLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLAN 579 (691)
Q Consensus 500 ~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~~ 579 (691)
|.+||++.|.+++|||+|||+||+|+++|.+..||++++.+||.+||.|+|+.||.
T Consensus 237 ------------------------y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~ 292 (372)
T KOG0676|consen 237 ------------------------YELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYE 292 (372)
T ss_pred ------------------------ccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHh
Confidence 33556888999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCC
Q psy7893 580 NIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 580 nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~ 659 (691)
||+|+||+|++|||.+||++||+.+.|...+++|+.++++.+++|+||||+||+++|+++||||+||+|+|+.++++||+
T Consensus 293 nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 293 NIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred heEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1e-77 Score=657.68 Aligned_cols=369 Identities=24% Similarity=0.466 Sum_probs=328.0
Q ss_pred CCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCC---CcCCcceeccccccccccccEEecccccCcccCHHH
Q psy7893 25 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDI 101 (691)
Q Consensus 25 ~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~---~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~ 101 (691)
++.++||||+||+++|+||||++.|++++||+||+++.... ......++|+++..... .+.+++||++|+|+|||+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~l~~Pi~~G~i~dwd~ 82 (376)
T PTZ00281 4 EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG-ILTLKYPIEHGIVTNWDD 82 (376)
T ss_pred CcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhcccc-CcEEeccCcCCEEcCHHH
Confidence 45679999999999999999999999999999999876431 01123589998765433 378999999999999999
Q ss_pred HHHHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccc
Q psy7893 102 QEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCG 180 (691)
Q Consensus 102 ~e~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~ 180 (691)
++.+|+|+| +.|.++|. ++|||+|||+++++..|++++|+|||.|++|+++++.++++|+|++ |+
T Consensus 83 ~e~l~~~~f~~~l~v~p~---~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~------g~----- 148 (376)
T PTZ00281 83 MEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS------GR----- 148 (376)
T ss_pred HHHHHHHHHHhhccCCCc---cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhc------CC-----
Confidence 999999999 57888887 8999999999999999999999999999999999999999999999 98
Q ss_pred ccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHh
Q psy7893 181 YQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 260 (691)
Q Consensus 181 ~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~ 260 (691)
+||||||+|++.|+|+||++|+++.++++++++||+++|+||+++|..++..+.+..+..++++|||++
T Consensus 149 -----------~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~ 217 (376)
T PTZ00281 149 -----------TTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKL 217 (376)
T ss_pred -----------ceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999988876554444567899999999
Q ss_pred eeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy7893 261 GFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELR 340 (691)
Q Consensus 261 cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~~ 340 (691)
|||+.||..+++...
T Consensus 218 c~v~~d~~~~~~~~~----------------------------------------------------------------- 232 (376)
T PTZ00281 218 AYVALDFEAEMQTAA----------------------------------------------------------------- 232 (376)
T ss_pred EEecCCchHHHHhhh-----------------------------------------------------------------
Confidence 999988654322100
Q ss_pred HHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHHH
Q psy7893 341 EIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWL 420 (691)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (691)
.
T Consensus 233 -------------------------------------------------~------------------------------ 233 (376)
T PTZ00281 233 -------------------------------------------------S------------------------------ 233 (376)
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHH
Q psy7893 421 IETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQER 500 (691)
Q Consensus 421 ~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~ 500 (691)
.. .
T Consensus 234 ------------------------------------------------~~--~--------------------------- 236 (376)
T PTZ00281 234 ------------------------------------------------SS--A--------------------------- 236 (376)
T ss_pred ------------------------------------------------Cc--c---------------------------
Confidence 00 0
Q ss_pred HHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhhcC
Q psy7893 501 LIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANN 580 (691)
Q Consensus 501 l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~~n 580 (691)
....|.+|||+.|.++.|||.|||+||+|+++|.+..||+++|.++|.+||.|+|+.|++|
T Consensus 237 -------------------~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~n 297 (376)
T PTZ00281 237 -------------------LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGN 297 (376)
T ss_pred -------------------cceeEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhh
Confidence 0012456778999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCC
Q psy7893 581 IFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 581 I~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~ 659 (691)
|+||||+|+||||.+||++||+.+.|...+++|+.+.+|.+++|+|||+||++++|+++||||+||+|+|++++++||+
T Consensus 298 Ivl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 298 VVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred ccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 9999999999999999999999999988889999999999999999999999999999999999999999999999885
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.2e-75 Score=641.97 Aligned_cols=370 Identities=24% Similarity=0.450 Sum_probs=327.7
Q ss_pred CCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCC---CcCCcceeccccccccccccEEecccccCcccCHHH
Q psy7893 25 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDI 101 (691)
Q Consensus 25 ~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~---~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~ 101 (691)
++.++||||+||+++|+||||++.|++++||++|+++.... ......++|+++...... +.+++|+++|+|+|||+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~l~~Pi~~G~i~d~d~ 82 (378)
T PTZ00004 4 EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGI-LTLKYPIEHGIVTNWDD 82 (378)
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhccccc-ceEcccCcCCEEcCHHH
Confidence 46779999999999999999999999999999999876421 011235889987654433 78999999999999999
Q ss_pred HHHHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccc
Q psy7893 102 QEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCG 180 (691)
Q Consensus 102 ~e~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~ 180 (691)
++.+|+|+| ++|++++. ++|||+||+++++...|++++|+|||.|+||+++++.++++|+|++ |+
T Consensus 83 ~e~i~~~~~~~~l~v~~~---~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~------g~----- 148 (378)
T PTZ00004 83 MEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYAS------GR----- 148 (378)
T ss_pred HHHHHHHHHHhhcccCCc---cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhc------CC-----
Confidence 999999998 57888876 8999999999999999999999999999999999999999999999 88
Q ss_pred ccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHh
Q psy7893 181 YQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 260 (691)
Q Consensus 181 ~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~ 260 (691)
+||||||+|++.|+|+||++|+++.++++++++||+++|+||+++|..+++.+.......++++|||++
T Consensus 149 -----------~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~ 217 (378)
T PTZ00004 149 -----------TTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKL 217 (378)
T ss_pred -----------ceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999988876543334456799999999
Q ss_pred eeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy7893 261 GFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELR 340 (691)
Q Consensus 261 cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~~ 340 (691)
|||+.||.+++....
T Consensus 218 c~v~~d~~~~~~~~~----------------------------------------------------------------- 232 (378)
T PTZ00004 218 CYIALDFDEEMGNSA----------------------------------------------------------------- 232 (378)
T ss_pred eeecCCHHHHHhhhh-----------------------------------------------------------------
Confidence 999998765532100
Q ss_pred HHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHHH
Q psy7893 341 EIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWL 420 (691)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (691)
..
T Consensus 233 -------------------------------------------------~~----------------------------- 234 (378)
T PTZ00004 233 -------------------------------------------------GS----------------------------- 234 (378)
T ss_pred -------------------------------------------------cC-----------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHH
Q psy7893 421 IETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQER 500 (691)
Q Consensus 421 ~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~ 500 (691)
.+.
T Consensus 235 ------------------------------------------------~~~----------------------------- 237 (378)
T PTZ00004 235 ------------------------------------------------SDK----------------------------- 237 (378)
T ss_pred ------------------------------------------------ccc-----------------------------
Confidence 000
Q ss_pred HHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCc-ccChHHHHHHHhccCCHHHHHHhhc
Q psy7893 501 LIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSI-QAGISETLNFVLNSYPQHIAQSLAN 579 (691)
Q Consensus 501 l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~-~~Gl~e~i~~si~~~~~d~r~~L~~ 579 (691)
....|.+|||..|.|+.|||.|||+||+|+++|.+ ..||+++|.++|.+||.|+|+.|++
T Consensus 238 -------------------~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~ 298 (378)
T PTZ00004 238 -------------------YEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYG 298 (378)
T ss_pred -------------------cceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHh
Confidence 00124567789999999999999999999999999 9999999999999999999999999
Q ss_pred CEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCC
Q psy7893 580 NIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 580 nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~ 659 (691)
||+||||+|+||||.+||++||++++|...+++|....+|.++||+|||+||++++|+++||||+||+|+|++++++||+
T Consensus 299 nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 299 NIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred hEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999985
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=4.4e-73 Score=628.72 Aligned_cols=383 Identities=23% Similarity=0.392 Sum_probs=318.5
Q ss_pred CceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCC------CCcCCcceeccccccccccccEEecccccCcccCHH
Q psy7893 27 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER------GKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYD 100 (691)
Q Consensus 27 ~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~------~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd 100 (691)
.++||||+||++|||||||++.|++++||+||+++... +.....+++|+++...... +.+++||++|+|+|||
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~-~~l~~Pi~~G~I~dwd 82 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKS-YTLTYPMKHGIVEDWD 82 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCC-cEEecCccCCEeCCHH
Confidence 56899999999999999999999999999999986632 1111245899998776543 8899999999999999
Q ss_pred HHHHHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccc
Q psy7893 101 IQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISC 179 (691)
Q Consensus 101 ~~e~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~ 179 (691)
+++.+|+|+| +.|+++|. +||+|+|||++++...|++++|+|||.|++|+++++.+++||+|++...+..
T Consensus 83 ~~e~l~~~~~~~~L~~~p~---~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~------ 153 (414)
T PTZ00280 83 LMEKFWEQCIFKYLRCEPE---EHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKA------ 153 (414)
T ss_pred HHHHHHHHHHHHhhccCCC---CCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccc------
Confidence 9999999998 67888887 8999999999999999999999999999999999999999999987110000
Q ss_pred cccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHH
Q psy7893 180 GYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD 259 (691)
Q Consensus 180 ~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~ 259 (691)
......++|||||+|++.|+|+||++|+++.++++++++||++||+||+++|..++..+.......++++|||+
T Consensus 154 ------~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~ 227 (414)
T PTZ00280 154 ------KELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEK 227 (414)
T ss_pred ------cccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Confidence 00001289999999999999999999999999999999999999999999998887655444445679999999
Q ss_pred heeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy7893 260 YGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLEL 339 (691)
Q Consensus 260 ~cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~ 339 (691)
+|||+.||.+++..+..
T Consensus 228 ~c~v~~d~~~e~~~~~~--------------------------------------------------------------- 244 (414)
T PTZ00280 228 YCYVAPDIAKEFEKYDS--------------------------------------------------------------- 244 (414)
T ss_pred cCcccCcHHHHHHHhhc---------------------------------------------------------------
Confidence 99999988766432100
Q ss_pred HHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHH
Q psy7893 340 REIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAW 419 (691)
Q Consensus 340 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 419 (691)
+. ...
T Consensus 245 -----~~------------------------------------------~~~---------------------------- 249 (414)
T PTZ00280 245 -----DP------------------------------------------KNH---------------------------- 249 (414)
T ss_pred -----Cc------------------------------------------ccc----------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHH
Q psy7893 420 LIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQE 499 (691)
Q Consensus 420 ~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~ 499 (691)
...|.++|..
T Consensus 250 -------------------------------------------------~~~~~~~d~~--------------------- 259 (414)
T PTZ00280 250 -------------------------------------------------FKKYTAVNSV--------------------- 259 (414)
T ss_pred -------------------------------------------------cceEECCCCC---------------------
Confidence 0011222100
Q ss_pred HHHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCc-ccChHHHHHHHhccCCHHHHHHhh
Q psy7893 500 RLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSI-QAGISETLNFVLNSYPQHIAQSLA 578 (691)
Q Consensus 500 ~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~-~~Gl~e~i~~si~~~~~d~r~~L~ 578 (691)
...++.|.|+.|||.|||+||+|+++|.+ ..||+++|.++|.+||+|+|+.|+
T Consensus 260 --------------------------~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~ 313 (414)
T PTZ00280 260 --------------------------TKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLY 313 (414)
T ss_pred --------------------------CCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHh
Confidence 00134799999999999999999999866 559999999999999999999999
Q ss_pred cCEEEeccCCCccchHHHHHHHHhhcCC----------------CCceeEEEeccCCccceeehhhhhcCcccccccccc
Q psy7893 579 NNIFVTGSLCQLPGFVERLNKDLLENRP----------------FQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVT 642 (691)
Q Consensus 579 ~nI~LtGG~s~~~Gf~eRL~~EL~~l~p----------------~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~it 642 (691)
+||+||||+|+||||.+||++||+.++| ...+++|+.++++.++||+|||+||++++|+++|||
T Consensus 314 ~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~it 393 (414)
T PTZ00280 314 KNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHT 393 (414)
T ss_pred hcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEE
Confidence 9999999999999999999999999974 355688888888889999999999999999999999
Q ss_pred HHHHhhhchhhHhhcCC
Q psy7893 643 QSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 643 k~eYeE~G~~~~~~k~~ 659 (691)
|+||+|+|+++++++..
T Consensus 394 k~eY~E~G~~i~~~~~~ 410 (414)
T PTZ00280 394 KAEYDEYGPSICRYNNV 410 (414)
T ss_pred HHHHhccChHheeeccc
Confidence 99999999999987643
No 8
>KOG0680|consensus
Probab=100.00 E-value=1.1e-71 Score=567.30 Aligned_cols=395 Identities=26% Similarity=0.438 Sum_probs=327.6
Q ss_pred CceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceecccccccccc-ccEEecccccCcccCHHHHHHH
Q psy7893 27 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAV-RFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 27 ~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~-~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
..+||||||++++|+|+++++.|+ ++|||+.+.+..+. ..|+|+++.++.+. .+..++|+++|+++||+.+..+
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~r----r~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~v 77 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGRR----RSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQV 77 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCce-eccchhhhcccccc----hhhhhhhhhhccCccceEEeehhhcceeEeehhHHHH
Confidence 569999999999999999999997 57999999887642 23999999887764 5888999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhh-ccCCCCCCcccccccccc
Q psy7893 106 FDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQY-NGWEGQSGVIISCGYQVY 184 (691)
Q Consensus 106 w~~~f~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya-~~~~~~~G~~~~~~~~~~ 184 (691)
|+|+|...+.+.+ ..++.+++|||.++.++..+.+.|+|||.|+|.+|+-...+.|+++. .-. ++...
T Consensus 78 WDy~f~~~~~~~~-~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~-~ne~~--------- 146 (400)
T KOG0680|consen 78 WDYCFGNPGFDVE-GKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVR-NNEDS--------- 146 (400)
T ss_pred HHHHhcCCCcCcc-cCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhcc-CCccc---------
Confidence 9999976665543 34899999999999999999999999999999999999999998776 210 00000
Q ss_pred ccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 185 QYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 185 ~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
++ ....++||||+||+.|||+|+++|.+..++++|+++||+.||++|++.++.|+.+++. ...++++|||.+||||
T Consensus 147 -tt-~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVS 222 (400)
T KOG0680|consen 147 -TT-TSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVS 222 (400)
T ss_pred -cc-cccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEec
Confidence 01 1236999999999999999999999999999999999999999999999999765432 2346999999999999
Q ss_pred ccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q psy7893 265 TDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVE 344 (691)
Q Consensus 265 ~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~~~~~~ 344 (691)
.||.+.|..+.... ++.
T Consensus 223 qnF~~~m~~~~~k~----~~~----------------------------------------------------------- 239 (400)
T KOG0680|consen 223 QNFKEDMDIAKTKF----QEN----------------------------------------------------------- 239 (400)
T ss_pred hhhHHHHHHHhhcc----ccc-----------------------------------------------------------
Confidence 99988765432100 000
Q ss_pred cCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHHHHHHH
Q psy7893 345 LTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETK 424 (691)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (691)
+..+.+..|+..+.+.||.+.
T Consensus 240 ---------------------------------------------------------~~~i~YvLPDF~T~k~Gyvr~-- 260 (400)
T KOG0680|consen 240 ---------------------------------------------------------KVMIDYVLPDFSTSKRGYVRN-- 260 (400)
T ss_pred ---------------------------------------------------------eeEEEEecCCcccccceeEec--
Confidence 001122334433334333210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHH
Q psy7893 425 KKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIEL 504 (691)
Q Consensus 425 ~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~l~~~ 504 (691)
.+ -..
T Consensus 261 --------------------------------------------~~-vk~------------------------------ 265 (400)
T KOG0680|consen 261 --------------------------------------------ED-VKL------------------------------ 265 (400)
T ss_pred --------------------------------------------CC-CCC------------------------------
Confidence 01 000
Q ss_pred HHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhhcCEEEe
Q psy7893 505 EEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVT 584 (691)
Q Consensus 505 ~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~~nI~Lt 584 (691)
..|.+.|+|++|||.+||+||+||+||+.++||+|+|..||..||..+|+.|+.||+++
T Consensus 266 ---------------------~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~i 324 (400)
T KOG0680|consen 266 ---------------------PEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCI 324 (400)
T ss_pred ---------------------CCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEe
Confidence 01236899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCC
Q psy7893 585 GSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 585 GG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~ 659 (691)
||+++||||.+||.+|||.++|..+.++|..+.||..-+|.||+.+|.+++|..+||||+||+|+|++++.+|++
T Consensus 325 GGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 325 GGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred cCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988875
No 9
>KOG0677|consensus
Probab=100.00 E-value=1.2e-71 Score=552.43 Aligned_cols=366 Identities=24% Similarity=0.410 Sum_probs=320.1
Q ss_pred CCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCc-----CCcceeccccccccccccEEecccccCcccCH
Q psy7893 25 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKK-----DGETQVGNDISNIEAVRFQLKTQFDKNVVTHY 99 (691)
Q Consensus 25 ~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~-----~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nw 99 (691)
++.++||.|||++++|+||||++.|.++||++||||.-+...+ -.++.||+++...+.. +.+.||+++|+|.||
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~-L~i~YPmeNGivrnw 80 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSL-LDINYPMENGIVRNW 80 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHH-HhcCCccccccccCh
Confidence 3577999999999999999999999999999999986543111 1246899999887665 789999999999999
Q ss_pred HHHHHHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccc
Q psy7893 100 DIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIIS 178 (691)
Q Consensus 100 d~~e~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~ 178 (691)
|+|+++|+|.| ++|.++|. ++.+|+||||.||..+|++|+|.|||+|||.++|++.|+++++|+. |.
T Consensus 81 ddM~h~WDytF~ekl~idp~---~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQ------GL--- 148 (389)
T KOG0677|consen 81 DDMEHVWDYTFGEKLKIDPT---NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQ------GL--- 148 (389)
T ss_pred HHHHHHHHhhhhhhccCCCc---cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHh------cc---
Confidence 99999999999 68999998 7899999999999999999999999999999999999999999999 98
Q ss_pred ccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHH
Q psy7893 179 CGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLW 258 (691)
Q Consensus 179 ~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe 258 (691)
.||+|||+|.+.|||+||++|+++++-.+|++++|+++|.||.+||..++..+....+.+.++.|||
T Consensus 149 -------------~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKE 215 (389)
T KOG0677|consen 149 -------------LTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKE 215 (389)
T ss_pred -------------cceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999877766777888999999
Q ss_pred HheeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy7893 259 DYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLE 338 (691)
Q Consensus 259 ~~cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~ 338 (691)
++|||+-|+..|-+ | +
T Consensus 216 KLCYisYd~e~e~k-----------------------------------------------------L-----------a 231 (389)
T KOG0677|consen 216 KLCYISYDLELEQK-----------------------------------------------------L-----------A 231 (389)
T ss_pred hheeEeechhhhhH-----------------------------------------------------h-----------h
Confidence 99999977543210 0 0
Q ss_pred HHHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHH
Q psy7893 339 LREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKA 418 (691)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 418 (691)
T Consensus 232 -------------------------------------------------------------------------------- 231 (389)
T KOG0677|consen 232 -------------------------------------------------------------------------------- 231 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHH
Q psy7893 419 WLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQ 498 (691)
Q Consensus 419 ~~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~ 498 (691)
+ +.+ .
T Consensus 232 -------------------------------------------l------ETT-v------------------------- 236 (389)
T KOG0677|consen 232 -------------------------------------------L------ETT-V------------------------- 236 (389)
T ss_pred -------------------------------------------h------hhe-e-------------------------
Confidence 0 000 0
Q ss_pred HHHHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhh
Q psy7893 499 ERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLA 578 (691)
Q Consensus 499 ~~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~ 578 (691)
...+|++|||..|.+|.|||.+||+||||.+|..+.+|++|++.++|+..+.|+|..||
T Consensus 237 ---------------------Lv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lY 295 (389)
T KOG0677|consen 237 ---------------------LVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELY 295 (389)
T ss_pred ---------------------eeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHH
Confidence 01246778899999999999999999999999999999999999999999999999999
Q ss_pred cCEEEeccCCCccchHHHHHHHHhhcCCC-----------CceeEEEeccCCccceeehhhhhcCc-cccccccccHHHH
Q psy7893 579 NNIFVTGSLCQLPGFVERLNKDLLENRPF-----------QSHFSVSLAENPELDAWSGARQFSLS-ENFHDFAVTQSDY 646 (691)
Q Consensus 579 ~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~-----------~~~i~V~~~~dp~~~aW~Gasilas~-~~f~~~~itk~eY 646 (691)
++|+|+||+|+.||+..||++||.++.-. -.+|+|-.++.+.+.+++||+++|+. ..-..+|+||+||
T Consensus 296 khIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqey 375 (389)
T KOG0677|consen 296 KHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEY 375 (389)
T ss_pred hHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHH
Confidence 99999999999999999999999987411 12344545556679999999999996 4456899999999
Q ss_pred hhhchhhHhh
Q psy7893 647 QEKGGEFFRV 656 (691)
Q Consensus 647 eE~G~~~~~~ 656 (691)
+|.|...+..
T Consensus 376 qE~G~~~l~k 385 (389)
T KOG0677|consen 376 QEEGINVLNK 385 (389)
T ss_pred HhhhHHHHHh
Confidence 9999998865
No 10
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.8e-70 Score=601.42 Aligned_cols=366 Identities=28% Similarity=0.514 Sum_probs=307.6
Q ss_pred CCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHHH
Q psy7893 25 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQ 104 (691)
Q Consensus 25 ~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~ 104 (691)
++.++||||+||++|||||||++.|++++||+++++....... .+++|++... ......+++|+++|.|.|||.++.
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~--~~~~g~~~~~-~~~~~~~~~p~~~g~i~~~~~~e~ 78 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSN--DYYVGDEALS-PRSNLELRSPIENGVIVDWDALEE 78 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSS--SCEETHHHHH-TGTGEEEEESEETTEESSHHHHHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccce--eEEeeccccc-chhheeeeeecccccccccccccc
Confidence 5678999999999999999999999999999999987764322 3489988544 233478999999999999999999
Q ss_pred HHHHHHh-hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccc
Q psy7893 105 IFDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQV 183 (691)
Q Consensus 105 iw~~~f~-~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~ 183 (691)
+|+|+|. .|++++. ++||||++|+++++..|++++|+|||.|+||+++++.+++||+|++ |.
T Consensus 79 i~~~~~~~~l~~~~~---~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~------g~-------- 141 (393)
T PF00022_consen 79 IWDYIFSNLLKVDPS---DHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYAS------GR-------- 141 (393)
T ss_dssp HHHHHHHTTT-SSGG---GSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHT------TB--------
T ss_pred ccccccccccccccc---cceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccccc------cc--------
Confidence 9999996 5888876 8999999999999999999999999999999999999999999999 98
Q ss_pred cccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCC-----------------
Q psy7893 184 YQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHIN----------------- 246 (691)
Q Consensus 184 ~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~----------------- 246 (691)
+||||||+|++.|+|+||++|+++.++++++++||+++++||+++|..++.....
T Consensus 142 --------~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (393)
T PF00022_consen 142 --------TTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNN 213 (393)
T ss_dssp --------SSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSS
T ss_pred --------ccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999986322110
Q ss_pred CCChHHHHHHHHHheeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7893 247 SITPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERL 326 (691)
Q Consensus 247 ~~~~~~~e~IKe~~cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~ 326 (691)
......++++|+++|||+.++..+-..
T Consensus 214 ~~~~~~~~~ik~~~~~v~~~~~~~~~~----------------------------------------------------- 240 (393)
T PF00022_consen 214 SDDEEIVEEIKEECCYVSEDPDEEQEE----------------------------------------------------- 240 (393)
T ss_dssp HHHHHHHHHHHHHHHSGGSSHHHHHHH-----------------------------------------------------
T ss_pred hhhhccchhccchhhhccccccccccc-----------------------------------------------------
Confidence 012345788888888887654320000
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhh
Q psy7893 327 VDDERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKE 406 (691)
Q Consensus 327 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~ 406 (691)
. .
T Consensus 241 ---------------------------------------------------------~----~----------------- 242 (393)
T PF00022_consen 241 ---------------------------------------------------------Q----A----------------- 242 (393)
T ss_dssp ---------------------------------------------------------H----H-----------------
T ss_pred ---------------------------------------------------------c----c-----------------
Confidence 0 0
Q ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhc
Q psy7893 407 IAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVIN 486 (691)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~ 486 (691)
..
T Consensus 243 --------------------------------------------------------------~~---------------- 244 (393)
T PF00022_consen 243 --------------------------------------------------------------SE---------------- 244 (393)
T ss_dssp --------------------------------------------------------------CS----------------
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCccc-------ChH
Q psy7893 487 KDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQA-------GIS 559 (691)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~-------Gl~ 559 (691)
.....|.+||++.+.++.|||.+||+||+|+.+|.+.. ||+
T Consensus 245 --------------------------------~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~ 292 (393)
T PF00022_consen 245 --------------------------------NPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLP 292 (393)
T ss_dssp --------------------------------TTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHH
T ss_pred --------------------------------ccceecccccccccccccccccccccccccccccccccccccccchhh
Confidence 00112456678999999999999999999999999887 999
Q ss_pred HHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEecc-CCccceeehhhhhcCcccccc
Q psy7893 560 ETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAE-NPELDAWSGARQFSLSENFHD 638 (691)
Q Consensus 560 e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~-dp~~~aW~Gasilas~~~f~~ 638 (691)
++|.++|.+||.++|+.|++||+||||+|+||||.+||++||+.+.|...+++|+.+. +|.++||+|||+||++++|++
T Consensus 293 ~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~ 372 (393)
T PF00022_consen 293 ELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQS 372 (393)
T ss_dssp HHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGG
T ss_pred hhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccccHHHHhhhchhhHhhcCC
Q psy7893 639 FAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 639 ~~itk~eYeE~G~~~~~~k~~ 659 (691)
+||||+||+|+|++++++||+
T Consensus 373 ~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 373 FWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp TSEEHHHHHHHGGGGHHHHT-
T ss_pred eeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999995
No 11
>KOG0679|consensus
Probab=100.00 E-value=2.7e-69 Score=561.98 Aligned_cols=395 Identities=24% Similarity=0.411 Sum_probs=309.8
Q ss_pred CCCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCC--CcCCcceeccccccccccccEEecccccCcccCHHH
Q psy7893 24 RDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG--KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDI 101 (691)
Q Consensus 24 ~~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~--~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~ 101 (691)
.++.++||||+||++|||||||++.|..++||++|......+ .....++++.++...+..+.++..|+++|.|.|||.
T Consensus 8 gdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD~ 87 (426)
T KOG0679|consen 8 GDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWDL 87 (426)
T ss_pred ccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCcccHHH
Confidence 367889999999999999999999999999999996432221 111235899988887777789999999999999999
Q ss_pred HHHHHHHHHh-hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccc
Q psy7893 102 QEQIFDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCG 180 (691)
Q Consensus 102 ~e~iw~~~f~-~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~ 180 (691)
++.+|+|+|+ +|.++|. +||+|||||++|+...|++++|++||+|+||+++++.++++++|++ |+
T Consensus 88 ~~~~w~~~~~~~Lk~~p~---ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~------Gr----- 153 (426)
T KOG0679|consen 88 FEMQWRYAYKNQLKVNPE---EHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFAN------GR----- 153 (426)
T ss_pred HHHHHHHHHhhhhhcCcc---ccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhc------CC-----
Confidence 9999999995 8999998 8999999999999999999999999999999999999999999999 99
Q ss_pred ccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHh
Q psy7893 181 YQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 260 (691)
Q Consensus 181 ~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~ 260 (691)
.|+||||||++.|+|+||+||+++.+++.+.++||++|+..++++|..+.-.+. . ...|+.+-
T Consensus 154 -----------stalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~---P---~y~ia~k~ 216 (426)
T KOG0679|consen 154 -----------STALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEII---P---MYNIASKE 216 (426)
T ss_pred -----------CceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccC---c---HHHhhhcc
Confidence 999999999999999999999999999999999999999999999986632111 1 11111110
Q ss_pred eeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy7893 261 GFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELR 340 (691)
Q Consensus 261 cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~~ 340 (691)
- |.. -.|.+
T Consensus 217 ~-v~~----------------------g~~an------------------------------------------------ 225 (426)
T KOG0679|consen 217 P-VRE----------------------GYPAN------------------------------------------------ 225 (426)
T ss_pred c-ccc----------------------cCcch------------------------------------------------
Confidence 0 000 00000
Q ss_pred HHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHHH
Q psy7893 341 EIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWL 420 (691)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (691)
++ + . ....++. .+++.|-
T Consensus 226 ------------~~--~-~---~~~~d~t--------------------------------------------es~~~y~ 243 (426)
T KOG0679|consen 226 ------------AV--L-R---VSIPDLT--------------------------------------------ESYHNYM 243 (426)
T ss_pred ------------hh--h-c---CChhHHH--------------------------------------------HHHHHHH
Confidence 00 0 0 0000000 0111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHH
Q psy7893 421 IETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQER 500 (691)
Q Consensus 421 ~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~ 500 (691)
.|+ ++.+..
T Consensus 244 ---------------------------------~~~-v~~e~k------------------------------------- 252 (426)
T KOG0679|consen 244 ---------------------------------EQR-VYQEFK------------------------------------- 252 (426)
T ss_pred ---------------------------------HHH-HHHHHH-------------------------------------
Confidence 000 100000
Q ss_pred HHHHHHHHhhCCCCccc----cccccccCCCCCcEEEecceeeeecccccCCCCCC------------CcccChHHHHHH
Q psy7893 501 LIELEEILRQHDPEFTS----LNQEQELSPKEANQLHIGVERMCGPECLFQPSMLG------------SIQAGISETLNF 564 (691)
Q Consensus 501 l~~~~~~l~~~dp~~~~----~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig------------~~~~Gl~e~i~~ 564 (691)
++.+.--|-+|++ +.+..+|++|+|+...+|.|||++||.||+|+.+- ...-|+++++..
T Consensus 253 ----e~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~s 328 (426)
T KOG0679|consen 253 ----ESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYS 328 (426)
T ss_pred ----HHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHh
Confidence 0011111223333 23456799999999999999999999999998652 223599999999
Q ss_pred HhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEecc---CCccceeehhhhhcCccccccccc
Q psy7893 565 VLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAE---NPELDAWSGARQFSLSENFHDFAV 641 (691)
Q Consensus 565 si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~---dp~~~aW~Gasilas~~~f~~~~i 641 (691)
||..||.|+|+.|+.||+||||+|+|+||.+||++||..+.|.. +++|+.+. ++++.+|+|||||||+++|+++||
T Consensus 329 Si~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~Wi 407 (426)
T KOG0679|consen 329 SINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWI 407 (426)
T ss_pred hhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhh
Confidence 99999999999999999999999999999999999999999986 99999886 789999999999999999999999
Q ss_pred cHHHHhhhch-hhHhhcC
Q psy7893 642 TQSDYQEKGG-EFFRVHP 658 (691)
Q Consensus 642 tk~eYeE~G~-~~~~~k~ 658 (691)
||+||||.|. ..+.+||
T Consensus 408 SKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 408 SKQEYEEVGKDQLVERRC 425 (426)
T ss_pred hHHHHHHhhhHHHHhhcC
Confidence 9999999999 5555555
No 12
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.7e-68 Score=584.03 Aligned_cols=369 Identities=27% Similarity=0.506 Sum_probs=322.7
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCC--cCCcceeccccccccccccEEecccccCcccCHHHHHHH
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK--KDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~--~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
++||||+||++||+||+|++.|++++||+|++++..... ....+++|+++..+.+. ..+++|+++|+|.|||.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGG-LELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCC-ceecCCCcCCEEeCHHHHHHH
Confidence 589999999999999999999999999999998654321 01135889998665443 589999999999999999999
Q ss_pred HHHHHh-hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccccc
Q psy7893 106 FDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVY 184 (691)
Q Consensus 106 w~~~f~-~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~ 184 (691)
|+|+|. .|++++. ++|+++++|++++...|++++|++||.|++|+++++.++++|+|++ |.
T Consensus 81 ~~~~~~~~l~~~~~---~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~------g~--------- 142 (373)
T smart00268 81 WDYTFFNELRVEPE---EHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYAS------GR--------- 142 (373)
T ss_pred HHHHHhhhcCCCCc---cCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhC------CC---------
Confidence 999996 6888775 7999999999999999999999999999999999999999999999 87
Q ss_pred ccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 185 QYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 185 ~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
++|||||+|++.|+|+||++|+++.++++++++||++++++|+++|+.+...+........++++|+++|||+
T Consensus 143 -------~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~ 215 (373)
T smart00268 143 -------TTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVA 215 (373)
T ss_pred -------CEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeec
Confidence 9999999999999999999999999999999999999999999999874322222334567999999999999
Q ss_pred ccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q psy7893 265 TDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVE 344 (691)
Q Consensus 265 ~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~~~~~~ 344 (691)
.++..++.....
T Consensus 216 ~~~~~~~~~~~~-------------------------------------------------------------------- 227 (373)
T smart00268 216 EDFEKEMKKARE-------------------------------------------------------------------- 227 (373)
T ss_pred CChHHHHHHhhh--------------------------------------------------------------------
Confidence 876554321000
Q ss_pred cCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHHHHHHH
Q psy7893 345 LTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETK 424 (691)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (691)
...
T Consensus 228 --------------------------------------------~~~--------------------------------- 230 (373)
T smart00268 228 --------------------------------------------SSE--------------------------------- 230 (373)
T ss_pred --------------------------------------------ccc---------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHH
Q psy7893 425 KKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIEL 504 (691)
Q Consensus 425 ~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~l~~~ 504 (691)
.. .
T Consensus 231 --------------------------------------------~~--~------------------------------- 233 (373)
T smart00268 231 --------------------------------------------SS--K------------------------------- 233 (373)
T ss_pred --------------------------------------------cc--c-------------------------------
Confidence 00 0
Q ss_pred HHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhhcCEEEe
Q psy7893 505 EEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVT 584 (691)
Q Consensus 505 ~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~~nI~Lt 584 (691)
....|.+|+|..+.++.|||.+||+||+|+++|.+..||+++|.++|.+||+++|+.|++||+||
T Consensus 234 ---------------~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvlt 298 (373)
T smart00268 234 ---------------LEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLS 298 (373)
T ss_pred ---------------cceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEee
Confidence 00124566788999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCC
Q psy7893 585 GSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 585 GG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~ 659 (691)
||+|+||||.+||++||+.++|...+++|..+.+|.+++|+|||++|++++|+++||||+||+|+|++++++||+
T Consensus 299 GG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 299 GGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred cccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 999999999999999999999988889998889999999999999999999999999999999999999999985
No 13
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.8e-66 Score=567.73 Aligned_cols=365 Identities=28% Similarity=0.486 Sum_probs=320.5
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCC---CcCCcceeccccccccccccEEecccccCcccCHHHHHHH
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~---~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
+||||+||+++|+||+|++.|++++||++|+++.... .....+++|+++..+....+.+++|+++|.|.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 5999999999999999999999999999999866421 0112468999987766545789999999999999999999
Q ss_pred HHHHHh-hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccccc
Q psy7893 106 FDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVY 184 (691)
Q Consensus 106 w~~~f~-~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~ 184 (691)
|+|+|. .|.+++. ++|+++++|++++...|++++++|||.|++|+|+++.++++|+|++ |.
T Consensus 81 ~~~~~~~~l~~~~~---~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~------g~--------- 142 (371)
T cd00012 81 WDHLFFNELKVNPE---EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYAS------GR--------- 142 (371)
T ss_pred HHHHHHHhcCCCCC---CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhc------CC---------
Confidence 999996 5677665 7999999999999999999999999999999999999999999999 88
Q ss_pred ccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 185 QYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 185 ~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
++|||||+|++.|+|+||++|+++.++++++++||++++++|+++|+.+++.+........+++||+++|||+
T Consensus 143 -------~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~ 215 (371)
T cd00012 143 -------TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVA 215 (371)
T ss_pred -------CeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeec
Confidence 9999999999999999999999999999999999999999999999988754444455678999999999999
Q ss_pred ccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q psy7893 265 TDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVE 344 (691)
Q Consensus 265 ~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~l~~~~~~~~ 344 (691)
.++..++....
T Consensus 216 ~~~~~~~~~~~--------------------------------------------------------------------- 226 (371)
T cd00012 216 LDIEEEQDKSA--------------------------------------------------------------------- 226 (371)
T ss_pred CCHHHHHHhhh---------------------------------------------------------------------
Confidence 87654321000
Q ss_pred cCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHHHHHHHHHHH
Q psy7893 345 LTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETK 424 (691)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (691)
..
T Consensus 227 --------------------------------------------~~---------------------------------- 228 (371)
T cd00012 227 --------------------------------------------KE---------------------------------- 228 (371)
T ss_pred --------------------------------------------cc----------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHH
Q psy7893 425 KKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIEL 504 (691)
Q Consensus 425 ~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~~~~~~l~~~ 504 (691)
.+ +
T Consensus 229 --------------------------------------------~~--~------------------------------- 231 (371)
T cd00012 229 --------------------------------------------TS--L------------------------------- 231 (371)
T ss_pred --------------------------------------------CC--c-------------------------------
Confidence 00 0
Q ss_pred HHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcccChHHHHHHHhccCCHHHHHHhhcCEEEe
Q psy7893 505 EEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVT 584 (691)
Q Consensus 505 ~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~~Gl~e~i~~si~~~~~d~r~~L~~nI~Lt 584 (691)
....|.+|+++.|.++.|||.+||+||+|+++|....||+++|..+|..||++.|+.+++||+||
T Consensus 232 ---------------~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~ 296 (371)
T cd00012 232 ---------------LEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLS 296 (371)
T ss_pred ---------------cceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEe
Confidence 00123456688999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchHHHHHHHHhhcCCC--CceeEEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhc
Q psy7893 585 GSLCQLPGFVERLNKDLLENRPF--QSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVH 657 (691)
Q Consensus 585 GG~s~~~Gf~eRL~~EL~~l~p~--~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k 657 (691)
||+|+||||.+||++||..+.|. ...+++....+|.+++|+|||+||++++|+++||||+||+|+|++++++|
T Consensus 297 GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 297 GGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred CCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 99999999999999999999997 55678888889999999999999999999999999999999999999875
No 14
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-65 Score=567.08 Aligned_cols=384 Identities=30% Similarity=0.514 Sum_probs=318.5
Q ss_pred CceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCC--C--CcCCcceecccccccccc-ccEEecccccCcccCHHH
Q psy7893 27 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER--G--KKDGETQVGNDISNIEAV-RFQLKTQFDKNVVTHYDI 101 (691)
Q Consensus 27 ~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~--~--~~~~~~~vG~ea~~~~~~-~~~l~~Pi~~G~I~nwd~ 101 (691)
.++|||||||++||+||||++.|+.+|||++++.+... . ......++|+++....+. ...+++|+++|.|.||++
T Consensus 6 ~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~ 85 (444)
T COG5277 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDA 85 (444)
T ss_pred CCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHH
Confidence 33499999999999999999999999999999986111 0 011234899998776553 588999999999999999
Q ss_pred HHHHHHHHHhh---cCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccc
Q psy7893 102 QEQIFDYAFSH---LSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIIS 178 (691)
Q Consensus 102 ~e~iw~~~f~~---L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~ 178 (691)
++.+|+|+|.. +..++. +||+++|||++++...|++++|++||+|+||+++++.+++|++|++ |.
T Consensus 86 ~e~~w~~~~~~~~~~~~~~~---~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~------g~--- 153 (444)
T COG5277 86 MEQIWDYTFFNKGDLLPSPE---EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYAS------GS--- 153 (444)
T ss_pred HHHHHHHhhcchhhccCCCc---CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhc------CC---
Confidence 99999999953 555555 8999999999999999999999999999999999999999999999 87
Q ss_pred ccccccccCCCCCc--eEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhC-----CCCCCC---C
Q psy7893 179 CGYQVYQYNGWEGQ--SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKY-----PSHINS---I 248 (691)
Q Consensus 179 ~~~~~~~~~~~~~~--sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~-----~~~~~~---~ 248 (691)
. +|+|||+|++.|||+||+||.++.++++|+++||+++|.||+++|...+ ..+... -
T Consensus 154 -------------~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~ 220 (444)
T COG5277 154 -------------SDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEY 220 (444)
T ss_pred -------------CCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccc
Confidence 6 9999999999999999999999999999999999999999999999843 222222 2
Q ss_pred ChHHHHHHHHHhe-------eeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7893 249 TPSRSEELLWDYG-------FVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKK 321 (691)
Q Consensus 249 ~~~~~e~IKe~~c-------yva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k 321 (691)
..+.++.+|+++| |++.+..++...+... .+.
T Consensus 221 ~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~---------------------------------------~~~-- 259 (444)
T COG5277 221 SSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEK---------------------------------------PAE-- 259 (444)
T ss_pred cHHHHHHHHHhhccccccccchhhcchHHHHHHhhh---------------------------------------hhh--
Confidence 3567888888888 6555444332211000 000
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhh
Q psy7893 322 REERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKA 401 (691)
Q Consensus 322 r~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~ 401 (691)
...
T Consensus 260 -------------------------------------------------------------------~~~---------- 262 (444)
T COG5277 260 -------------------------------------------------------------------KST---------- 262 (444)
T ss_pred -------------------------------------------------------------------hcc----------
Confidence 000
Q ss_pred hhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhh
Q psy7893 402 KLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDV 481 (691)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~ 481 (691)
..++.
T Consensus 263 -------------------------------------------------------------------~~~~~-------- 267 (444)
T COG5277 263 -------------------------------------------------------------------ESTFQ-------- 267 (444)
T ss_pred -------------------------------------------------------------------ccccc--------
Confidence 00000
Q ss_pred hhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCccccccccccCCCCCcEEEecce-eeeecccccCCC--CCCCcccC-
Q psy7893 482 YKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVE-RMCGPECLFQPS--MLGSIQAG- 557 (691)
Q Consensus 482 y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~E-r~~~pE~LF~Ps--~ig~~~~G- 557 (691)
+.-.......++.+|++..|.++.| ||++||.||+|. ..+++.+|
T Consensus 268 -------------------------------~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~ 316 (444)
T COG5277 268 -------------------------------LSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGK 316 (444)
T ss_pred -------------------------------ccchhccccccccCCCCceEeechhhhhhcchhhcCCcccccccccccc
Confidence 0000000112345667899999999 999999999999 88888777
Q ss_pred --------------------------hHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCcee
Q psy7893 558 --------------------------ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHF 611 (691)
Q Consensus 558 --------------------------l~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i 611 (691)
|+|++.++|..||.+.|+.|++||+||||+|++|||.+||.+||+.+.|....+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v 396 (444)
T COG5277 317 IDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKV 396 (444)
T ss_pred chhhhhhhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCce
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCccceeehhhhhcCccccccccccHHHHhhhchhhHhhcCC
Q psy7893 612 SVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 659 (691)
Q Consensus 612 ~V~~~~dp~~~aW~Gasilas~~~f~~~~itk~eYeE~G~~~~~~k~~ 659 (691)
.|+.+.+|.+++|+|||+||++++|+++||||+||+|+|++++++|++
T Consensus 397 ~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 397 SVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred eeecCCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999999999874
No 15
>KOG0678|consensus
Probab=100.00 E-value=4.7e-53 Score=431.43 Aligned_cols=376 Identities=24% Similarity=0.422 Sum_probs=307.8
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCC-----------CCcCCcceeccccccccccccEEecccccCcc
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER-----------GKKDGETQVGNDISNIEAVRFQLKTQFDKNVV 96 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~-----------~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I 96 (691)
.++|+|||++.+|.||+|+..|++++|++++...... +..+.++++|+++.. .+ .+.+.+|+++|.+
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~-~ysl~ypiRhg~v 82 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-AT-TYSLKYPIRHGQV 82 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hc-ccccccceecccc
Confidence 3499999999999999999999999999998753211 112456799999877 33 4889999999999
Q ss_pred cCHHHHHHHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCc
Q psy7893 97 THYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGV 175 (691)
Q Consensus 97 ~nwd~~e~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~ 175 (691)
.|||.||.+|+..+ .+|..+|+ +|-.||||||++++++|+.++|++||.|++|.+|++.++++|+.++..+.+.|-
T Consensus 83 e~wd~mer~~~q~ifkylr~ePe---dh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~e 159 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIFKYLRAEPE---DHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGE 159 (415)
T ss_pred ccHHHHHHHHhhhhhhhhcCCcc---cceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999975 78999998 899999999999999999999999999999999999999999877633222221
Q ss_pred cccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHH
Q psy7893 176 IISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEE 255 (691)
Q Consensus 176 ~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~ 255 (691)
..-+|+|||.|.+.|||+||.+||++.++++.++++|+++|.+++.+|+.+.+..+-......++.
T Consensus 160 --------------r~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~ 225 (415)
T KOG0678|consen 160 --------------RFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKA 225 (415)
T ss_pred --------------heeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHH
Confidence 237999999999999999999999999999999999999999999999999877666666678999
Q ss_pred HHHHheeeeccHHHHHHhhhhcccccccccccccCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy7893 256 LLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNE 335 (691)
Q Consensus 256 IKe~~cyva~dy~~el~~~~~~~~~~~~~~~~qlp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kr~~~~~~~e~~~~~ 335 (691)
|||++||+.+|+..|..++..
T Consensus 226 iKe~ycy~cPdivkef~k~d~----------------------------------------------------------- 246 (415)
T KOG0678|consen 226 IKEKYCYTCPDIVKEFAKYDR----------------------------------------------------------- 246 (415)
T ss_pred HHhhhcccCcHHHHHHHHhcc-----------------------------------------------------------
Confidence 999999999998776544211
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhhhcCcchhHH
Q psy7893 336 LLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAE 415 (691)
Q Consensus 336 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~k~~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 415 (691)
+
T Consensus 247 -------------------------------------------------------------------------------e 247 (415)
T KOG0678|consen 247 -------------------------------------------------------------------------------E 247 (415)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChH
Q psy7893 416 FKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSE 495 (691)
Q Consensus 416 ~~~~~~~~~~~r~~~~~k~~~r~~~~~~~~~~~s~~~q~r~~~~~~l~~~~~~~d~~~~~d~dw~~y~~~~~~~~~~~~~ 495 (691)
+..|++- . .+.+.+ . +
T Consensus 248 p~K~ikq------~------------------------~~~~~i----------~--~---------------------- 263 (415)
T KOG0678|consen 248 PAKWIKQ------Y------------------------TGINVI----------T--G---------------------- 263 (415)
T ss_pred HHHHHHH------H------------------------hccchh----------c--C----------------------
Confidence 1112110 0 000000 0 0
Q ss_pred HHHHHHHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCCCCCcc-cChHHHHHHHhccCCHHHH
Q psy7893 496 EEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQ-AGISETLNFVLNSYPQHIA 574 (691)
Q Consensus 496 ~~~~~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~ig~~~-~Gl~e~i~~si~~~~~d~r 574 (691)
....|.++-|||..||++|+|.+...+. ..|++++...|+.||.|.|
T Consensus 264 --------------------------------~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvr 311 (415)
T KOG0678|consen 264 --------------------------------KKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVR 311 (415)
T ss_pred --------------------------------CceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccc
Confidence 0235778899999999999998776554 4699999999999999999
Q ss_pred HHhhcCEEEeccCCCccchHHHHHHHHhhcCC--------------CCceeEEEeccCCccceeehhhhhcCcccccccc
Q psy7893 575 QSLANNIFVTGSLCQLPGFVERLNKDLLENRP--------------FQSHFSVSLAENPELDAWSGARQFSLSENFHDFA 640 (691)
Q Consensus 575 ~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p--------------~~~~i~V~~~~dp~~~aW~Gasilas~~~f~~~~ 640 (691)
+-||+||++.||+++|++|..|+++++..++- ...+|.|+...--.+++|.||+++||.+.|-+.+
T Consensus 312 r~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~ 391 (415)
T KOG0678|consen 312 RPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPAC 391 (415)
T ss_pred hhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCccccccc
Confidence 99999999999999999999999999887642 1112344333344699999999999999999999
Q ss_pred ccHHHHhhhchhhHhh
Q psy7893 641 VTQSDYQEKGGEFFRV 656 (691)
Q Consensus 641 itk~eYeE~G~~~~~~ 656 (691)
-||++|+|+|++|++.
T Consensus 392 ~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 392 HTKEDYEEYGPSICRT 407 (415)
T ss_pred CcchhhhhhChhhhhc
Confidence 9999999999999875
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.1e-34 Score=312.68 Aligned_cols=208 Identities=16% Similarity=0.099 Sum_probs=167.0
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccc---cccEEecccccCcccCHHHHHHH
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~---~~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
.|+||+||+++|+|++++. +.+.+||+|+...... ...+||++|..... ....+++|+++|.|.||+.++.+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~----~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~l 84 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTG----KVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAM 84 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCC----eEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHH
Confidence 4999999999999998775 5677899999875321 13589999876532 24778999999999999999999
Q ss_pred HHHHHhhcCC-CCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccccc
Q psy7893 106 FDYAFSHLSI-NTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVY 184 (691)
Q Consensus 106 w~~~f~~L~i-~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~ 184 (691)
|+|+|+++.. .+. ..++++++.|+..+...|+.+.+ +||.+|++.++++.++++|+|++ |.
T Consensus 85 l~~~~~~~~~~~~~--~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~------g~--------- 146 (335)
T PRK13930 85 LRYFIKKARGRRFF--RKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGA------GL--------- 146 (335)
T ss_pred HHHHHHHHhhcccC--CCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhc------CC---------
Confidence 9999975533 222 25788888888888777766665 79999999999999999999998 65
Q ss_pred ccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 185 QYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 185 ~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
......+++|||+|+++|+|+||.+|.++. ...+++||.++|++|.++|..++.. ..+...++.+|+++|+++
T Consensus 147 --~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~~~~---~~~~~~ae~~K~~~~~~~ 219 (335)
T PRK13930 147 --PVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRKYNL---LIGERTAEEIKIEIGSAY 219 (335)
T ss_pred --CcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHhhcCc
Confidence 112246789999999999999999999874 5678999999999999999877432 234467899999999876
Q ss_pred cc
Q psy7893 265 TD 266 (691)
Q Consensus 265 ~d 266 (691)
.+
T Consensus 220 ~~ 221 (335)
T PRK13930 220 PL 221 (335)
T ss_pred CC
Confidence 54
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=6.1e-34 Score=307.12 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=165.9
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccc---cccEEecccccCcccCHHHHHHH
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~---~~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
.|+||+||+++|+|++|++. .+++||+|+.++... ..+++|++|..+.. ..+.+.+|+++|.|.||+.++.+
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~----~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~l 81 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTK----KVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKM 81 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCC----eEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHH
Confidence 59999999999999999876 678999999986532 13589999976532 24778999999999999999999
Q ss_pred HHHHHhh-cCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccccc
Q psy7893 106 FDYAFSH-LSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVY 184 (691)
Q Consensus 106 w~~~f~~-L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~ 184 (691)
|+|+|.+ +.. +. .+|.+++..|.+++..++++++.+|+.+|++.++++.++++|+|++ |.
T Consensus 82 l~~~~~~~~~~-~~---~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~------g~--------- 142 (334)
T PRK13927 82 LKYFIKKVHKN-FR---PSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA------GL--------- 142 (334)
T ss_pred HHHHHHHHhhc-cC---CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc------CC---------
Confidence 9999964 454 33 5666666666888888999999999999999999999999999998 64
Q ss_pred ccCCCCCceEEEEEeCCceEEEEEe-ecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheee
Q psy7893 185 QYNGWEGQSGVIISCGYQCTHVIPV-INGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFV 263 (691)
Q Consensus 185 ~~~~~~~~sgLVVDiG~~~T~IvPV-~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyv 263 (691)
+.....+++|||+|+++|+++|+ ++|++.... +++||.++|++|.++|..++.. ..+...++.+|+++|++
T Consensus 143 --~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~~~---~~~~~~ae~iK~~~~~~ 214 (334)
T PRK13927 143 --PVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNYNL---LIGERTAERIKIEIGSA 214 (334)
T ss_pred --cccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHhCc---CcCHHHHHHHHHHhhcc
Confidence 12223668999999999999999 777776554 4699999999999999866532 13455688899888887
Q ss_pred ec
Q psy7893 264 AT 265 (691)
Q Consensus 264 a~ 265 (691)
..
T Consensus 215 ~~ 216 (334)
T PRK13927 215 YP 216 (334)
T ss_pred CC
Confidence 53
No 18
>KOG0797|consensus
Probab=100.00 E-value=1.2e-32 Score=295.30 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=141.2
Q ss_pred ccEEecccccCcccC----------HHHHHHHHHHHH-hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCC
Q psy7893 84 RFQLKTQFDKNVVTH----------YDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVP 152 (691)
Q Consensus 84 ~~~l~~Pi~~G~I~n----------wd~~e~iw~~~f-~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp 152 (691)
.+.+.+||++|...- .+++..||+|++ +.|+|.+.....+.+|++.|-.-.+..-+.+.-++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 378999999997642 467899999999 579998876668999999999888888999999999999999
Q ss_pred eEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHH
Q psy7893 153 SVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHH 232 (691)
Q Consensus 153 ~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~y 232 (691)
++.++..+++|.||+ |. ++++|||||+..|+|+||-+|.+++++..++++||.+||..
T Consensus 258 ~~~v~QESlaatfGa------Gl----------------ss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~ 315 (618)
T KOG0797|consen 258 SAVVHQESLAATFGA------GL----------------SSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRC 315 (618)
T ss_pred eEEEEhhhhHHHhcC------Cc----------------cceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHH
Confidence 999999999999999 98 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC-----CCCCCCCChHHHHHHHHHheeee
Q psy7893 233 LHKLLQLKY-----PSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 233 L~~lL~~~~-----~~~~~~~~~~~~e~IKe~~cyva 264 (691)
+..+|...+ +.+.+.++..+++++||++|...
T Consensus 316 f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~ 352 (618)
T KOG0797|consen 316 FLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLR 352 (618)
T ss_pred HHHHHHhcCCCcccccccccccHHHHHHHHHHhcccc
Confidence 999987642 23445667788999999999875
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.98 E-value=1.1e-31 Score=289.71 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=162.6
Q ss_pred EEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceecccccccc---ccccEEecccccCcccCHHHHHHHH
Q psy7893 30 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIE---AVRFQLKTQFDKNVVTHYDIQEQIF 106 (691)
Q Consensus 30 vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~---~~~~~l~~Pi~~G~I~nwd~~e~iw 106 (691)
|=||+||.++++-.. ...-.+..||+|+.....++..+..++||++|..+. ...+.+++|+++|+|.||+.++.+|
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~ 83 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMI 83 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHH
Confidence 889999999998543 344456779999987543221122358999988762 1257889999999999999999999
Q ss_pred HHHHhh-cCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccc
Q psy7893 107 DYAFSH-LSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQ 185 (691)
Q Consensus 107 ~~~f~~-L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~ 185 (691)
+|+|.+ +..... ...++++|.|+..+...|+. ++.+||.+|++.++++.++++|+|+. |.
T Consensus 84 ~~~l~~~~~~~~~--~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~------g~---------- 144 (333)
T TIGR00904 84 KYFIKQVHSRKSF--FKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGA------GL---------- 144 (333)
T ss_pred HHHHHHHhccccc--CCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhc------CC----------
Confidence 999964 443222 12369999999988887776 66789999999999999999999998 64
Q ss_pred cCCCCCceEEEEEeCCceEEEEEe-ecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 186 YNGWEGQSGVIISCGYQCTHVIPV-INGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 186 ~~~~~~~sgLVVDiG~~~T~IvPV-~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
+.....+++|||+|+++|+|++| ++|.++... +++||+++|++|.+++..++.. ..+...++.+|+++|++.
T Consensus 145 -~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~~~~---~~~~~~ae~lK~~l~~~~ 217 (333)
T TIGR00904 145 -PVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRTYNL---LIGEQTAERIKIEIGSAY 217 (333)
T ss_pred -cccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHHhcc---cCCHHHHHHHHHHHhccc
Confidence 22234789999999999999999 788776554 4799999999999998766532 234567899999999876
Q ss_pred cc
Q psy7893 265 TD 266 (691)
Q Consensus 265 ~d 266 (691)
.+
T Consensus 218 ~~ 219 (333)
T TIGR00904 218 PL 219 (333)
T ss_pred cc
Confidence 43
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.98 E-value=1.1e-31 Score=289.91 Aligned_cols=206 Identities=15% Similarity=0.210 Sum_probs=164.7
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccc---cccEEecccccCcccCHHHHHHH
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~---~~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
.|-||+||.++++ |.....-.+..||+|+.....+ ..++||++|..+.. .++.+.+|+++|+|.|||.++.+
T Consensus 6 ~~giDlGt~~~~i-~~~~~~~~~~~ps~va~~~~~~----~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~ 80 (335)
T PRK13929 6 EIGIDLGTANILV-YSKNKGIILNEPSVVAVDTETK----AVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDL 80 (335)
T ss_pred eEEEEcccccEEE-EECCCcEEecCCcEEEEECCCC----eEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHH
Confidence 4899999999998 5544333455799998874432 13589999987643 24778899999999999999999
Q ss_pred HHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccc
Q psy7893 106 FDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGY 181 (691)
Q Consensus 106 w~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~ 181 (691)
|+|++. .++..+. .+++|+|.|+..+...|+.+.+ +|+.+|++.++++.++++|++++ |.
T Consensus 81 l~~~~~~~~~~l~~~~~---~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~------g~------ 144 (335)
T PRK13929 81 LKQIMKKAGKNIGMTFR---KPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGA------DL------ 144 (335)
T ss_pred HHHHHHHHHHhcCCCCC---CCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhc------CC------
Confidence 999995 3555443 4689999999999999999998 99999999999999999999998 64
Q ss_pred cccccCCCCCceEEEEEeCCceEEEEEe-ecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHh
Q psy7893 182 QVYQYNGWEGQSGVIISCGYQCTHVIPV-INGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 260 (691)
Q Consensus 182 ~~~~~~~~~~~sgLVVDiG~~~T~IvPV-~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~ 260 (691)
+...+.+++|||+|+++|+++++ ++|.... ..+++||.++|++|.++|..+|... .....+|++|+++
T Consensus 145 -----~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~~~~~~---~~~~~AE~iK~~l 213 (335)
T PRK13929 145 -----PVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRKKYNLL---IGERTAEQVKMEI 213 (335)
T ss_pred -----CcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHHHhCcC---cCHHHHHHHHHHH
Confidence 22335789999999999999999 5555543 3467999999999999998665322 2346799999999
Q ss_pred eeeecc
Q psy7893 261 GFVATD 266 (691)
Q Consensus 261 cyva~d 266 (691)
|++..+
T Consensus 214 ~~~~~~ 219 (335)
T PRK13929 214 GYALIE 219 (335)
T ss_pred cCCCCC
Confidence 988644
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.96 E-value=1.4e-28 Score=262.63 Aligned_cols=206 Identities=15% Similarity=0.194 Sum_probs=155.0
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceecccccccccc---ccEEecccccCcccCHHHHHHH
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAV---RFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~---~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
-|-||+||++|++ |..+..-.+..||+|+.+..... .+.+|++|..+.+. ++.+.+|+++|+|.|++..+.+
T Consensus 3 ~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~~~----i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~ 77 (326)
T PF06723_consen 3 DIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDTGK----ILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEM 77 (326)
T ss_dssp EEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHH
T ss_pred ceEEecCcccEEE-EECCCCEEEecCcEEEEECCCCe----EEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHH
Confidence 5789999999999 76666677889999998876432 45789999887553 5899999999999999999999
Q ss_pred HHHHHhhcCCC-CCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccccc
Q psy7893 106 FDYAFSHLSIN-TEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVY 184 (691)
Q Consensus 106 w~~~f~~L~i~-~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~ 184 (691)
+.|++++..-. .- ....++++.|...+...|+.+.+.+ ...|+..|+++.+++++++|+ |.
T Consensus 78 l~~~l~k~~~~~~~--~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGa------Gl--------- 139 (326)
T PF06723_consen 78 LRYFLKKALGRRSF--FRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGA------GL--------- 139 (326)
T ss_dssp HHHHHHHHHTSS-S--S--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHT------T----------
T ss_pred HHHHHHHhccCCCC--CCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcC------CC---------
Confidence 99999754322 21 1334666666666666666666666 568999999999999999999 87
Q ss_pred ccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 185 QYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 185 ~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
++.++...+|||+|+++|.|.-+..|.++ ..+.+.+||+++++.+.++++.+|..+ +....+|.||++++++.
T Consensus 140 --~i~~~~g~miVDIG~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y~l~---Ig~~tAE~iK~~~g~~~ 212 (326)
T PF06723_consen 140 --DIFEPRGSMIVDIGGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKYNLL---IGERTAEKIKIEIGSAS 212 (326)
T ss_dssp ---TTSSS-EEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHHSEE-----HHHHHHHHHHH-BSS
T ss_pred --CCCCCCceEEEEECCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhhCcc---cCHHHHHHHHHhcceee
Confidence 66677899999999999999999999988 678889999999999999999998543 56678999999999875
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.95 E-value=6.2e-28 Score=260.87 Aligned_cols=205 Identities=16% Similarity=0.117 Sum_probs=160.1
Q ss_pred EEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccc---cccEEecccccCcccCHHHHHHHH
Q psy7893 30 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQIF 106 (691)
Q Consensus 30 vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~---~~~~l~~Pi~~G~I~nwd~~e~iw 106 (691)
+-||+||.++++-.. +....+..||+|+....... .+++|++|..+.+ .+..+.+|+++|+|.||+.++.+|
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~~~----i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l 80 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNTNK----VLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKML 80 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEccCCEEEEECCCCe----EEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHH
Confidence 889999999999554 44455678999988754321 3489999887642 257778999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCcc-EEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccc
Q psy7893 107 DYAFSHLSINTEGNVNHP-IVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQ 185 (691)
Q Consensus 107 ~~~f~~L~i~~~~~~~~p-vLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~ 185 (691)
+|+++++..... ..+| +++|. |.+....++++++.+|+.+|++.+.++.++++|++++ |.
T Consensus 81 ~~~~~~~~~~~~--~~~p~~vitv-P~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~------g~---------- 141 (336)
T PRK13928 81 KYFINKACGKRF--FSKPRIMICI-PTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA------GL---------- 141 (336)
T ss_pred HHHHHHHhccCC--CCCCeEEEEe-CCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHc------CC----------
Confidence 999976543311 2567 66666 7777788999999999999999999999999999998 64
Q ss_pred cCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 186 YNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 186 ~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
....+..++|||+|+++|+|+++..|.++.. ..+++||.++|+.|.+.+..++... +....++.+|+.+|++.
T Consensus 142 -~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~~~~~~---~~~~~ae~lK~~~~~~~ 214 (336)
T PRK13928 142 -DISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRKKYKLL---IGERTAEEIKIKIGTAF 214 (336)
T ss_pred -cccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHHHhchh---cCHHHHHHHHHHhcccc
Confidence 2234578999999999999999998877643 4689999999999999998665321 23345777777777654
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.91 E-value=2.1e-23 Score=216.48 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=164.1
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceecccccccccc---ccEEecccccCcccCHHHHHH
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAV---RFQLKTQFDKNVVTHYDIQEQ 104 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~---~~~l~~Pi~~G~I~nwd~~e~ 104 (691)
..|=||+||.+|++ |.....-.+..||+|+..+..+. ...+.||++|..+-+. +....+|+++|+|.|++..+.
T Consensus 7 ~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~~~--~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ 83 (342)
T COG1077 7 NDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEGKT--KVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTEL 83 (342)
T ss_pred ccceeeecccceEE-EEcCceEEecCceEEEEeecCCC--ceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHH
Confidence 47899999999999 66667777889999998875221 2245899999988653 578899999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCccEEEEe-cCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccc
Q psy7893 105 IFDYAFSHLSINTEGNVNHPIVLTE-PFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQV 183 (691)
Q Consensus 105 iw~~~f~~L~i~~~~~~~~pvLltE-p~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~ 183 (691)
++.|++++..-+... ...|.+++. |.......|+.+-|.+ +.-|...|+++..+.+|++++ |.
T Consensus 84 ml~~fik~~~~~~~~-~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGa------gl-------- 147 (342)
T COG1077 84 MLKYFIKKVHKNGSS-FPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGA------GL-------- 147 (342)
T ss_pred HHHHHHHHhccCCCC-CCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcC------CC--------
Confidence 999998754322210 123445555 4445555555555554 666999999999999999999 88
Q ss_pred cccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheee
Q psy7893 184 YQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFV 263 (691)
Q Consensus 184 ~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyv 263 (691)
++..++..+|||+|+++|.|..|..|-++ ....+-+||+.+++.+.++++++|..++ ....++.||.+.+++
T Consensus 148 ---pi~ep~G~mvvDIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a 219 (342)
T COG1077 148 ---PIMEPTGSMVVDIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSA 219 (342)
T ss_pred ---cccCCCCCEEEEeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhccc
Confidence 77888999999999999999999666555 2334449999999999999999987654 445699999999988
Q ss_pred ec
Q psy7893 264 AT 265 (691)
Q Consensus 264 a~ 265 (691)
.+
T Consensus 220 ~~ 221 (342)
T COG1077 220 YP 221 (342)
T ss_pred cc
Confidence 65
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.58 E-value=2e-13 Score=141.12 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=97.6
Q ss_pred ecccccCcccCHHHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHh
Q psy7893 88 KTQFDKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFS 163 (691)
Q Consensus 88 ~~Pi~~G~I~nwd~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla 163 (691)
..|+.+|.|.|++..+.++.++++ .++.. -..++++.|.......|+.+. -+++.-|+.-+.+..+++++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~-----~~~vvisVP~~~~~~~r~a~~-~a~~~aGl~~~~li~ep~Aa 101 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIE-----LTHAATAIPPGTIEGDPKVIV-NVIESAGIEVLHVLDEPTAA 101 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCC-----cCcEEEEECCCCCcccHHHHH-HHHHHcCCceEEEeehHHHH
Confidence 469999999999999999999994 34432 246889988877777776655 45567799999999999998
Q ss_pred hhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHH
Q psy7893 164 YQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLL 237 (691)
Q Consensus 164 ~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL 237 (691)
+.+. +. ...+|||+|+++|+++-+.+|.++ ..+.+++||+++|+.|.+.+
T Consensus 102 a~~~------~~----------------~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~ 151 (239)
T TIGR02529 102 AAVL------QI----------------KNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAY 151 (239)
T ss_pred HHHh------cC----------------CCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHh
Confidence 8887 54 456999999999999988999887 36677899999999886554
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.52 E-value=2.3e-12 Score=135.34 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=112.2
Q ss_pred CceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHHHHH
Q psy7893 27 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIF 106 (691)
Q Consensus 27 ~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~iw 106 (691)
.-.++||+||+++|+-.+ +..+. .+ -+| ...+.+++.|.|.|++....++
T Consensus 24 ~~~~~iDiGSssi~~vv~-~~~~~-----~~--------------~~~----------~~~~~~vr~G~i~di~~a~~~i 73 (267)
T PRK15080 24 PLKVGVDLGTANIVLAVL-DEDGQ-----PV--------------AGA----------LEWADVVRDGIVVDFIGAVTIV 73 (267)
T ss_pred CEEEEEEccCceEEEEEE-cCCCC-----EE--------------EEE----------eccccccCCCEEeeHHHHHHHH
Confidence 457999999999997543 22221 01 122 2345689999999999999999
Q ss_pred HHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccc
Q psy7893 107 DYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQ 182 (691)
Q Consensus 107 ~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~ 182 (691)
.++.+ .++... ..++++.|.......+..+. -+.+.-|+.-..+..++.++..+. +.
T Consensus 74 ~~~~~~ae~~~g~~i-----~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~------~~------- 134 (267)
T PRK15080 74 RRLKATLEEKLGREL-----THAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVL------GI------- 134 (267)
T ss_pred HHHHHHHHHHhCCCc-----CeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHh------CC-------
Confidence 99886 345432 24666766665555555555 677888999888999998887776 54
Q ss_pred ccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHH
Q psy7893 183 VYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLL 237 (691)
Q Consensus 183 ~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL 237 (691)
..++|||+|+++|+++-+.+|.++. ...+++||+++|+.|.+.+
T Consensus 135 ---------~~~~vvDIGggtt~i~v~~~g~~~~--~~~~~~GG~~it~~Ia~~l 178 (267)
T PRK15080 135 ---------DNGAVVDIGGGTTGISILKDGKVVY--SADEPTGGTHMSLVLAGAY 178 (267)
T ss_pred ---------CCcEEEEeCCCcEEEEEEECCeEEE--EecccCchHHHHHHHHHHh
Confidence 4479999999999999889998874 4677999999999987665
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.22 E-value=1.2e-09 Score=127.85 Aligned_cols=184 Identities=14% Similarity=0.088 Sum_probs=116.4
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcEE--------EecceeecccCCCCcCCcceecccccccc---------------cc-
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIE---------------AV- 83 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~v--------iPs~vg~~~~~~~~~~~~~~vG~ea~~~~---------------~~- 83 (691)
.+|-||+||.++++++..+..|.++ +||+|+..... ..+||+.|.... +.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~------~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 76 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKG------DLLVGQIAKRQAVINPENTFYSVKRFIGRK 76 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCC------CEEECHHHHHhHHhCccceehhhHHhcCCC
Confidence 4789999999999998866666532 45566553221 124554432210 00
Q ss_pred ---------------------ccEEecccccCcccCHHHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHH
Q psy7893 84 ---------------------RFQLKTQFDKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSR 138 (691)
Q Consensus 84 ---------------------~~~l~~Pi~~G~I~nwd~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~r 138 (691)
...+..|..+..+..-+....++.++.+ .++... ..+++|.|.......|
T Consensus 77 ~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v-----~~~VItVPa~f~~~qR 151 (621)
T CHL00094 77 FSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETV-----TQAVITVPAYFNDSQR 151 (621)
T ss_pred hHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEEECCCCCHHHH
Confidence 0011111122233445666667776653 244322 3588899988887777
Q ss_pred HHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecC-ee--c
Q psy7893 139 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVING-CI--D 215 (691)
Q Consensus 139 e~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG-~v--l 215 (691)
+.+.+. .+.-|+.-+.++.++.+|+++. |. .......-+|+|+|++++.|+.+..+ .+ +
T Consensus 152 ~a~~~A-a~~AGl~v~~li~EptAAAlay------~~-----------~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~v 213 (621)
T CHL00094 152 QATKDA-GKIAGLEVLRIINEPTAASLAY------GL-----------DKKNNETILVFDLGGGTFDVSILEVGDGVFEV 213 (621)
T ss_pred HHHHHH-HHHcCCceEEEeccHHHHHHHh------cc-----------ccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEE
Confidence 766555 5777999999999999998887 53 11234678999999999999887433 22 1
Q ss_pred ccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 216 ASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 216 ~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
.......++||.++++.|.+++..+
T Consensus 214 la~~gd~~lGG~d~D~~l~~~~~~~ 238 (621)
T CHL00094 214 LSTSGDTHLGGDDFDKKIVNWLIKE 238 (621)
T ss_pred EEEecCCCcChHHHHHHHHHHHHHH
Confidence 2223345899999999998877543
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.19 E-value=4.5e-10 Score=130.77 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=116.7
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEE--------EecceeecccCCCCcCCcceeccccccccc---------------ccc
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEA---------------VRF 85 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~v--------iPs~vg~~~~~~~~~~~~~~vG~ea~~~~~---------------~~~ 85 (691)
+|=||+||.++.+++..+..|.++ +||+|+..... ..+||..|..... ...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~------~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~ 74 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDG------GVEVGKEALAAAAEDPKNTISSVKRLMGRSI 74 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCC------CEEecHHHHHhhhhChhhhHHHHHHHhCCCc
Confidence 367999999999998766555533 57777664321 2366665532100 000
Q ss_pred -----EEeccc--------------ccCcccCHHHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHHHH
Q psy7893 86 -----QLKTQF--------------DKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMS 142 (691)
Q Consensus 86 -----~l~~Pi--------------~~G~I~nwd~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~l~ 142 (691)
.-..|+ ..|.+.-.+....++.++.. .++... ..+++|.|.......|+.+.
T Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v-----~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 75 EDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDL-----VGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred cchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCHHHHHHHH
Confidence 000122 12333334555556666542 355332 36999999998888887766
Q ss_pred HHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEee--cCee-cccCe
Q psy7893 143 ELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVI--NGCI-DASKA 219 (691)
Q Consensus 143 EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~--dG~v-l~~a~ 219 (691)
+. .+..|+.-+.++.++.+|+++. |. ......+-+|+|+|++++.|+.+- +|.. +....
T Consensus 150 ~A-a~~AGl~v~~li~EPtAAAlay------~~-----------~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~ 211 (599)
T TIGR01991 150 DA-ARLAGLNVLRLLNEPTAAAVAY------GL-----------DKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATG 211 (599)
T ss_pred HH-HHHcCCCceEEecCHHHHHHHH------hh-----------ccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEc
Confidence 55 5788999999999999998776 43 111246789999999999988773 3332 11122
Q ss_pred EEeeccHHHHHHHHHHHHhhh
Q psy7893 220 KRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 220 ~ri~iGG~~lt~yL~~lL~~~ 240 (691)
.-..+||.++++.|.+++..+
T Consensus 212 gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 212 GDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 234799999999999888654
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.18 E-value=6.4e-10 Score=130.81 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=76.0
Q ss_pred ccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCc
Q psy7893 123 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQ 202 (691)
Q Consensus 123 ~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~ 202 (691)
..+++|.|.......|+.+.+ ..+.-|+.-+.++.++.+|+++. |. .......-+|+|+|++
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAlay------~~-----------~~~~~~~vlV~DlGgG 236 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKD-AGKIAGLDVLRIINEPTAAALAF------GM-----------DKNDGKTIAVYDLGGG 236 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeCchHHHHHHh------cc-----------ccCCCcEEEEEeCCCC
Confidence 369999999988887777654 55777999999999999999888 54 1123478899999999
Q ss_pred eEEEEEee--cCee-cccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 203 CTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 203 ~T~IvPV~--dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
++.|+.+. +|.. +........+||.++++.|.+++..+
T Consensus 237 T~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 237 TFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred eEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHH
Confidence 99998763 4433 22223345799999999998887543
No 29
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.17 E-value=4.2e-10 Score=131.15 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=73.7
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCce
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~ 203 (691)
.+++|.|.......|+.+.+ ..+..|+.-+.++.++.+|+++. |.. .......-+|+|+|+++
T Consensus 132 ~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y------~~~----------~~~~~~~vlV~D~Gggt 194 (595)
T TIGR02350 132 EAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAY------GLD----------KSKKDEKILVFDLGGGT 194 (595)
T ss_pred eEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHH------hhc----------ccCCCcEEEEEECCCCe
Confidence 68999999988888877765 55677999999999999998877 430 00124788999999999
Q ss_pred EEEEEee--cCee-cccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 204 THVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 204 T~IvPV~--dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
+.|+.+- +|.. +........+||.++++.|.+++..+
T Consensus 195 ~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~ 234 (595)
T TIGR02350 195 FDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE 234 (595)
T ss_pred EEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHH
Confidence 9987773 3322 22222335799999999998887543
No 30
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.17 E-value=9.6e-10 Score=127.64 Aligned_cols=119 Identities=17% Similarity=0.075 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCC
Q psy7893 99 YDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSG 174 (691)
Q Consensus 99 wd~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G 174 (691)
.+....++.++-+ .++... ..+++|.|.......|+.+.+. .+.-|+.-+.++++|.+|+++. |
T Consensus 119 eei~a~iL~~lk~~ae~~lg~~v-----~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay------~ 186 (595)
T PRK01433 119 PEIAAEIFIYLKNQAEEQLKTNI-----TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAY------G 186 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHH------h
Confidence 3445555555543 344322 3689999998887777766655 6778999999999999999888 5
Q ss_pred ccccccccccccCCCCCceEEEEEeCCceEEEEEee--cCee-cccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 175 VIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~--dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
. ........+|+|+|++++.|+.+- +|.. +....--..+||.++++.|.+++..+
T Consensus 187 ~-----------~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 187 L-----------NKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred c-----------ccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 4 111235689999999999987773 4422 21122234699999999999888654
No 31
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.12 E-value=3.9e-09 Score=123.33 Aligned_cols=183 Identities=11% Similarity=0.066 Sum_probs=115.5
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcE--------EEecceeecccCCCCcCCcceecccccccc---------------ccc
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNL--------IFKNLIAKPRKERGKKDGETQVGNDISNIE---------------AVR 84 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~--------viPs~vg~~~~~~~~~~~~~~vG~ea~~~~---------------~~~ 84 (691)
.+|=||+||.++.+++..+..|.+ .+||+|+..... .++|..|.... +..
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~-------~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 92 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-------IEVGYEARANAAQDPKNTISSVKRFMGRS 92 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCC-------EEEcHHHHHhhHhCchhhHHHHHHHhCCC
Confidence 478999999999999875555542 356666654321 25665553210 000
Q ss_pred c------EEeccc--------------ccCcccCHHHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHH
Q psy7893 85 F------QLKTQF--------------DKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSL 140 (691)
Q Consensus 85 ~------~l~~Pi--------------~~G~I~nwd~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~ 140 (691)
+ .-..|+ ..|.+.-.+....++.++.. .++... ..+++|.|.......|+.
T Consensus 93 ~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v-----~~~VITVPa~f~~~qR~a 167 (616)
T PRK05183 93 LADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGEL-----DGAVITVPAYFDDAQRQA 167 (616)
T ss_pred chhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCHHHHHH
Confidence 0 000121 12223333455556666553 344322 368999999888887776
Q ss_pred HHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEee--cCee-ccc
Q psy7893 141 MSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVI--NGCI-DAS 217 (691)
Q Consensus 141 l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~--dG~v-l~~ 217 (691)
+. -..+..|+.-+.+++++.+|+++. |. .......-+|+|+|++++.|+.+- .|.. +..
T Consensus 168 ~~-~Aa~~AGl~v~~li~EPtAAAlay------~~-----------~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evla 229 (616)
T PRK05183 168 TK-DAARLAGLNVLRLLNEPTAAAIAY------GL-----------DSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLA 229 (616)
T ss_pred HH-HHHHHcCCCeEEEecchHHHHHHh------hc-----------ccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEE
Confidence 64 556888999999999999998776 43 111236789999999999988773 3322 122
Q ss_pred CeEEeeccHHHHHHHHHHHHhhh
Q psy7893 218 KAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 218 a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
...-..+||.++++.|.+++..+
T Consensus 230 t~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 230 TGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred ecCCCCcCHHHHHHHHHHHHHHH
Confidence 22335799999999998887654
No 32
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.12 E-value=8.1e-09 Score=121.71 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=117.4
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcE--------EEecceeecccCCCCcCCcceecccccccc---------------cc-
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNL--------IFKNLIAKPRKERGKKDGETQVGNDISNIE---------------AV- 83 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~--------viPs~vg~~~~~~~~~~~~~~vG~ea~~~~---------------~~- 83 (691)
.+|=||+||.++.+++..+..|.+ .+||+|+..... ..+||+.|.... +.
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~------~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 113 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG------DRLVGQIAKRQAVVNPENTFFSVKRFIGRK 113 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCC------CEEECHHHHHhhhhCchhhhHHHHHhhCCC
Confidence 478899999999999886666652 245666553221 124554433210 00
Q ss_pred -----------cc----------EEecccccCcccCHHHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHH
Q psy7893 84 -----------RF----------QLKTQFDKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSR 138 (691)
Q Consensus 84 -----------~~----------~l~~Pi~~G~I~nwd~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~r 138 (691)
.+ .+..|..+..+...+....++.++.. .++.. -..+++|.|.......|
T Consensus 114 ~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~-----v~~~VITVPa~f~~~qR 188 (673)
T PLN03184 114 MSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDK-----VTKAVITVPAYFNDSQR 188 (673)
T ss_pred cchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCC-----CCeEEEEECCCCCHHHH
Confidence 00 11112222334445666677777653 34432 23699999998888877
Q ss_pred HHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEee-c-Cee-c
Q psy7893 139 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVI-N-GCI-D 215 (691)
Q Consensus 139 e~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~-d-G~v-l 215 (691)
+.+.+ ..+.-|+..+.++.++.+|+++. |. .......-+|+|+|++++.|+.+. . |.. +
T Consensus 189 ~a~~~-Aa~~AGl~v~~li~EPtAAAlay------g~-----------~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eV 250 (673)
T PLN03184 189 TATKD-AGRIAGLEVLRIINEPTAASLAY------GF-----------EKKSNETILVFDLGGGTFDVSVLEVGDGVFEV 250 (673)
T ss_pred HHHHH-HHHHCCCCeEEEeCcHHHHHHHh------hc-----------ccCCCCEEEEEECCCCeEEEEEEEecCCEEEE
Confidence 76654 55788999999999999998877 43 111246889999999999987773 2 221 1
Q ss_pred ccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 216 ASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 216 ~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
....-..++||.++++.|.+++..+
T Consensus 251 la~~gd~~LGG~dfD~~L~~~~~~~ 275 (673)
T PLN03184 251 LSTSGDTHLGGDDFDKRIVDWLASN 275 (673)
T ss_pred EEecCCCccCHHHHHHHHHHHHHHH
Confidence 1122245799999999998887543
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.12 E-value=2.5e-09 Score=125.35 Aligned_cols=98 Identities=11% Similarity=0.005 Sum_probs=73.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCce
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~ 203 (691)
.+|+|.|.......|+.+.+ ..+..|+.-+.++.+|.+|+++. |. .......-+|+|+|+++
T Consensus 162 ~aVITVPayF~~~qR~at~~-Aa~~AGl~v~rlInEPtAAAlay------g~-----------~~~~~~~vlV~DlGGGT 223 (657)
T PTZ00186 162 NAVVTCPAYFNDAQRQATKD-AGTIAGLNVIRVVNEPTAAALAY------GM-----------DKTKDSLIAVYDLGGGT 223 (657)
T ss_pred eEEEEECCCCChHHHHHHHH-HHHHcCCCeEEEEcChHHHHHHH------hc-----------cCCCCCEEEEEECCCCe
Confidence 68999998888777766554 55778999999999999998887 53 11124688999999999
Q ss_pred EEEEEee--cCee-cccCeEEeeccHHHHHHHHHHHHhh
Q psy7893 204 THVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLLQL 239 (691)
Q Consensus 204 T~IvPV~--dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~ 239 (691)
+.|+-+- +|.. +....--..+||.++++.|.+++..
T Consensus 224 ~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 224 FDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred EEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 9988773 5543 2222234589999999999887753
No 34
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.11 E-value=5.3e-09 Score=122.66 Aligned_cols=99 Identities=13% Similarity=0.001 Sum_probs=73.4
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCce
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~ 203 (691)
.+++|.|.......|+.+. -..+..|+.-+.++.++.+|+++. |. ........+|+|+|+++
T Consensus 135 ~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y------~~-----------~~~~~~~vlV~D~GggT 196 (627)
T PRK00290 135 EAVITVPAYFNDAQRQATK-DAGKIAGLEVLRIINEPTAAALAY------GL-----------DKKGDEKILVYDLGGGT 196 (627)
T ss_pred eEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEecchHHHHHHh------hh-----------ccCCCCEEEEEECCCCe
Confidence 6899999998888777765 455778999999999999998877 43 00124789999999999
Q ss_pred EEEEEeec--Cee-cccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 204 THVIPVIN--GCI-DASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 204 T~IvPV~d--G~v-l~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
+.|+.+-- |.. +.......++||.++++.|.+++..+
T Consensus 197 ~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~ 236 (627)
T PRK00290 197 FDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE 236 (627)
T ss_pred EEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHH
Confidence 99887732 221 22222335799999999998877543
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.10 E-value=1.4e-09 Score=127.90 Aligned_cols=185 Identities=15% Similarity=0.063 Sum_probs=113.5
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcEE--------EecceeecccCCCCcCCcceeccccccccc---------------cc
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEA---------------VR 84 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~v--------iPs~vg~~~~~~~~~~~~~~vG~ea~~~~~---------------~~ 84 (691)
.+|=||+||.++.+++..+..|.++ +||+|+..... ..+||..|..... ..
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~------~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 76 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSG------DRLVGQLAKRQAVTNAENTVYSIKRFIGRR 76 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCC------CEEEcHHHHHhhhhCcccchHHHHHHhCCC
Confidence 4788999999999998766666543 46777664321 2256665532100 00
Q ss_pred c------EEeccc-----ccC--------cccCH-HHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHH
Q psy7893 85 F------QLKTQF-----DKN--------VVTHY-DIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSL 140 (691)
Q Consensus 85 ~------~l~~Pi-----~~G--------~I~nw-d~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~ 140 (691)
+ .-+.|+ .+| ..... +....++.++.. .++... ..+++|.|.......|+.
T Consensus 77 ~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v-----~~~VITVPa~f~~~qR~a 151 (653)
T PRK13411 77 WDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPV-----TQAVITVPAYFTDAQRQA 151 (653)
T ss_pred ccchhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCcHHHHH
Confidence 0 001111 111 11122 333334444432 344322 369999999988888887
Q ss_pred HHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEee--cCee-ccc
Q psy7893 141 MSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVI--NGCI-DAS 217 (691)
Q Consensus 141 l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~--dG~v-l~~ 217 (691)
+.+ ..+.-|+.-+.+++++.+|+++. |.. .......-+|+|+|++++.|+-+- +|.. +..
T Consensus 152 ~~~-Aa~~AGl~v~~li~EPtAAAl~y------~~~----------~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 152 TKD-AGTIAGLEVLRIINEPTAAALAY------GLD----------KQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred HHH-HHHHcCCCeEEEecchHHHHHHh------ccc----------ccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 765 55777999999999999998887 430 001236789999999999987662 2322 222
Q ss_pred CeEEeeccHHHHHHHHHHHHhhh
Q psy7893 218 KAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 218 a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
...-..+||.++++.|.+++..+
T Consensus 215 t~gd~~LGG~dfD~~l~~~l~~~ 237 (653)
T PRK13411 215 TAGNNHLGGDDFDNCIVDWLVEN 237 (653)
T ss_pred EecCCCcCHHHHHHHHHHHHHHH
Confidence 22234799999999998877543
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.08 E-value=3.3e-09 Score=124.76 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=73.1
Q ss_pred ccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCc
Q psy7893 123 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQ 202 (691)
Q Consensus 123 ~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~ 202 (691)
..+++|.|.+.....|+.+.+ ..+..|+.-+.+++++.+|+++. |.. .......+.+|+|+|++
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y------~~~---------~~~~~~~~vlv~D~Ggg 204 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAY------GLD---------KKGDGEKNVLIFDLGGG 204 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHH------hhh---------ccCCCCCEEEEEECCCC
Confidence 369999999888877766554 56788999999999999988877 430 00112467899999999
Q ss_pred eEEEEEee--cCee-cccCeEEeeccHHHHHHHHHHHHhh
Q psy7893 203 CTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLLQL 239 (691)
Q Consensus 203 ~T~IvPV~--dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~ 239 (691)
++.|+-+- +|.. +....-...+||.++++.|.+++..
T Consensus 205 T~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 205 TFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred eEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 99987763 4432 2111223579999999999887753
No 37
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.08 E-value=3.3e-09 Score=124.78 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=74.1
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCce
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~ 203 (691)
.+|+|.|.......|+.+.+. .+.-|+.-+.++.++.+|+++. |. .......-+|+|+|+++
T Consensus 137 ~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay------g~-----------~~~~~~~vlV~DlGgGT 198 (668)
T PRK13410 137 GAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAY------GL-----------DRSSSQTVLVFDLGGGT 198 (668)
T ss_pred eEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHh------cc-----------ccCCCCEEEEEECCCCe
Confidence 599999999888888765554 4778999999999999998887 54 11234788999999999
Q ss_pred EEEEEee--cCee-cccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 204 THVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 204 T~IvPV~--dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
+.|+.+. +|.. +.....-..+||.++++.|.+++..+
T Consensus 199 ~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~ 238 (668)
T PRK13410 199 FDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQ 238 (668)
T ss_pred EEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHH
Confidence 9998773 3322 22222335799999999998877543
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.02 E-value=2.1e-08 Score=112.90 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=109.2
Q ss_pred eEEEEcCCceEEEEEeCCCCCc--------EEEecceeecccCC----------------------------------CC
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPN--------LIFKNLIAKPRKER----------------------------------GK 66 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~--------~viPs~vg~~~~~~----------------------------------~~ 66 (691)
.|=||+||.++-+++..+..|. ..+||+|+...... ..
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 3679999999999998655443 23566665531100 00
Q ss_pred cCCcceeccccccc--ccc-ccEE---------ecccccCcccCHH-HHHHHHHHHHh----hcCCCCCCCCCccEEEEe
Q psy7893 67 KDGETQVGNDISNI--EAV-RFQL---------KTQFDKNVVTHYD-IQEQIFDYAFS----HLSINTEGNVNHPIVLTE 129 (691)
Q Consensus 67 ~~~~~~vG~ea~~~--~~~-~~~l---------~~Pi~~G~I~nwd-~~e~iw~~~f~----~L~i~~~~~~~~pvLltE 129 (691)
.....+||.+|... ... ...+ ..++..+.+...+ ....+|.++-. .++... ..+|+|.
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~~v-----~~~VItv 156 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAI-----TQAVIGR 156 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCCCC-----CcEEEEE
Confidence 11234688776432 110 1111 1334434433333 33445555432 244222 3688998
Q ss_pred cCCCc-----hHHHHH--HHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCc
Q psy7893 130 PFLNP-----NYSRSL--MSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQ 202 (691)
Q Consensus 130 p~~~~-----~~~re~--l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~ 202 (691)
|.... ...|.. ...-..+.-|+..+.++++|.+|+++. |. .......-||+|+|++
T Consensus 157 Pa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y------~~-----------~~~~~~~vlV~D~GGG 219 (450)
T PRK11678 157 PVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF------EA-----------TLTEEKRVLVVDIGGG 219 (450)
T ss_pred CCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHh------cc-----------ccCCCCeEEEEEeCCC
Confidence 87643 444433 245667888999999999999999887 43 1123478999999999
Q ss_pred eEEEEEee-cC----------eecccCeEEeeccHHHHHHHHH
Q psy7893 203 CTHVIPVI-NG----------CIDASKAKRIDLGGFSVIHHLH 234 (691)
Q Consensus 203 ~T~IvPV~-dG----------~vl~~a~~ri~iGG~~lt~yL~ 234 (691)
+++++-|- ++ .++..+- ..+||.+++..|.
T Consensus 220 T~D~Svv~~~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 220 TTDCSMLLMGPSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred eEEEEEEEecCcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 99988773 22 1222221 3699999999986
No 39
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.01 E-value=2.2e-08 Score=110.12 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCe
Q psy7893 134 PNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGC 213 (691)
Q Consensus 134 ~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~ 213 (691)
++..-+.+.+ +++..|+.-+.+..++++++++. .. +.......+|||+|+++|+++.+.+|.
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~------~~-----------~~~~~~~~~vvDiG~gtt~i~i~~~g~ 217 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAV------LT-----------EDEKELGVCLIDIGGGTTDIAVYTGGS 217 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhh------cC-----------cchhcCCEEEEEeCCCcEEEEEEECCE
Confidence 3344444443 55777888888888888887765 22 111235679999999999999999998
Q ss_pred ecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeee
Q psy7893 214 IDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 264 (691)
Q Consensus 214 vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva 264 (691)
++ ..+.+++||+++|+.|.+.+. ++...+|.+|.++|...
T Consensus 218 ~~--~~~~i~~GG~~it~~i~~~l~---------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 218 IR--YTKVIPIGGNHITKDIAKALR---------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred EE--EEeeecchHHHHHHHHHHHhC---------CCHHHHHHHHHHeeEec
Confidence 76 367889999999999877552 34567899999888753
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.82 E-value=1.5e-07 Score=109.67 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCc
Q psy7893 100 DIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGV 175 (691)
Q Consensus 100 d~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~ 175 (691)
+....++.++.. .++... ..+++|.|.......|+.+.+.+ +.-|+..+.++..+.+|+++. +.
T Consensus 114 ~~~~~~l~~l~~~a~~~~~~~~-----~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y------~~ 181 (602)
T PF00012_consen 114 ELSAMILKYLKEMAEKYLGEKV-----TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAY------GL 181 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHTSBE-----EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHT------TT
T ss_pred cccccchhhhcccchhhccccc-----ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccc------cc
Confidence 445555555543 244322 35899999998888777766554 677999999999999987665 32
Q ss_pred cccccccccccCCCCCceEEEEEeCCceEEEEEe--ecCee-cccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 176 IISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPV--INGCI-DASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 176 ~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV--~dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
. ....+.+-||+|+|++++.|+.+ .+|.. +........+||.+++..|.+++..+
T Consensus 182 ~----------~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 182 E----------RSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp T----------SSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred c----------ccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 0 00134799999999999988877 34543 22233456899999999999887543
No 41
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.73 E-value=5.9e-07 Score=99.50 Aligned_cols=91 Identities=19% Similarity=0.099 Sum_probs=67.5
Q ss_pred HHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeec
Q psy7893 145 LFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDL 224 (691)
Q Consensus 145 lFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~i 224 (691)
++|.-|..-..++.++++|..+.-. ...+.-.+++||+|+++|+|..+.+|.+. ....+++
T Consensus 173 ~v~r~gl~v~~i~l~plAsa~a~L~-----------------~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipv 233 (418)
T COG0849 173 CVERAGLKVDNIVLEPLASALAVLT-----------------EDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPV 233 (418)
T ss_pred HHHHhCCCeeeEEEehhhhhhhccC-----------------cccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEee
Confidence 3345555555555666666555411 23345788999999999999999999998 5677899
Q ss_pred cHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheee
Q psy7893 225 GGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFV 263 (691)
Q Consensus 225 GG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyv 263 (691)
||+++|+-|..-|. .+...+|+||.+++..
T Consensus 234 gG~~vT~DIa~~l~---------t~~~~AE~iK~~~g~a 263 (418)
T COG0849 234 GGDHVTKDIAKGLK---------TPFEEAERIKIKYGSA 263 (418)
T ss_pred CccHHHHHHHHHhC---------CCHHHHHHHHHHcCcc
Confidence 99999999998874 3446699999987654
No 42
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.69 E-value=1.6e-07 Score=105.20 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCe
Q psy7893 134 PNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGC 213 (691)
Q Consensus 134 ~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~ 213 (691)
+....+.+.. +++.-|+.-..++.++++++++. .. +.......+|||+|+++|+++-+.+|.
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~------l~-----------~~e~~~gv~vvDiGggtTdisv~~~G~ 225 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAV------LT-----------EDERELGVCVVDIGGGTMDIAVYTGGA 225 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHh------cC-----------hhhhhcCeEEEEeCCCceEEEEEECCE
Confidence 3444555554 66888999999999999998876 32 111236689999999999999999998
Q ss_pred ecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheee
Q psy7893 214 IDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFV 263 (691)
Q Consensus 214 vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyv 263 (691)
++ ....+++||.++|+.|...|. ++...+|.+|.+++..
T Consensus 226 l~--~~~~i~~GG~~it~dIa~~l~---------i~~~~AE~lK~~~g~~ 264 (420)
T PRK09472 226 LR--HTKVIPYAGNVVTSDIAYAFG---------TPPSDAEAIKVRHGCA 264 (420)
T ss_pred EE--EEeeeechHHHHHHHHHHHhC---------cCHHHHHHHHHhccee
Confidence 87 678899999999999986652 3456688888776643
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.38 E-value=8.1e-05 Score=81.02 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=45.6
Q ss_pred eEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHh
Q psy7893 193 SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 260 (691)
Q Consensus 193 sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~ 260 (691)
+.++||+|+++|+++-+.+|.++ ..+.+++||.++++.+.+.+. ++...++++|...
T Consensus 189 ~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~ 245 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLHPGRML--FTREVPFGTRQLTSELSRAYG---------LNPEEAGEAKQQG 245 (348)
T ss_pred eEEEEEECCCcEEEEEEECCeEE--EEEEeechHHHHHHHHHHHcC---------CCHHHHHHHHhcC
Confidence 58999999999999999999988 678999999999998876542 3444566666543
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.04 E-value=0.00026 Score=77.14 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=36.0
Q ss_pred ceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHH
Q psy7893 192 QSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLL 237 (691)
Q Consensus 192 ~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL 237 (691)
.+-++||+|++.|+++-+.+|.++ ..+.+++||.++++.+.+.+
T Consensus 180 ~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL 223 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT
T ss_pred ceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc
Confidence 467999999999999999999998 67889999999999988764
No 45
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00015 Score=84.31 Aligned_cols=190 Identities=16% Similarity=0.079 Sum_probs=119.1
Q ss_pred CceEEEEcCCceEEEEEeCCC-CCcEEEecceeecccCCC--C-cCCcceeccccccccc-----cccEEecccccC---
Q psy7893 27 SLPIVFDNGAWCCRVGWASCE-KPNLIFKNLIAKPRKERG--K-KDGETQVGNDISNIEA-----VRFQLKTQFDKN--- 94 (691)
Q Consensus 27 ~~~vVID~GS~~~KaG~age~-~P~~viPs~vg~~~~~~~--~-~~~~~~vG~ea~~~~~-----~~~~l~~Pi~~G--- 94 (691)
..+|=||+||.++.+.+.... .|. ++++..+....+.- . .+...++|..+..... ..+.+++.+-.|
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 357999999999999888655 444 33444333221110 0 0112477876644211 113333333321
Q ss_pred ----------cccCHHHHHHHHHHHHh----hcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhh
Q psy7893 95 ----------VVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDS 160 (691)
Q Consensus 95 ----------~I~nwd~~e~iw~~~f~----~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~a 160 (691)
...--+....++.++-+ .|+-. -+.+++|.|.+.....|..+. -.....|++-+.+++.|
T Consensus 84 ~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~-----v~~~VItVPayF~d~qR~at~-~A~~iaGl~vlrlinEP 157 (579)
T COG0443 84 LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEK-----VTDAVITVPAYFNDAQRQATK-DAARIAGLNVLRLINEP 157 (579)
T ss_pred CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCC-----cceEEEEeCCCCCHHHHHHHH-HHHHHcCCCeEEEecch
Confidence 11122333344444332 34433 246999999888777765554 55567899999999999
Q ss_pred HHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeec--Ce-ecccCeEEeeccHHHHHHHHHHHH
Q psy7893 161 LFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVIN--GC-IDASKAKRIDLGGFSVIHHLHKLL 237 (691)
Q Consensus 161 lla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~d--G~-vl~~a~~ri~iGG~~lt~yL~~lL 237 (691)
.+|+|+. |. .......-+|+|+|+|++.|.-|-- |. .+........+||++++..|...+
T Consensus 158 tAAAlay------g~-----------~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 158 TAAALAY------GL-----------DKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred HHHHHHh------Hh-----------ccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHH
Confidence 9999998 65 2224589999999999999988832 42 244556677899999999988777
Q ss_pred hhh
Q psy7893 238 QLK 240 (691)
Q Consensus 238 ~~~ 240 (691)
...
T Consensus 221 ~~~ 223 (579)
T COG0443 221 VME 223 (579)
T ss_pred HHH
Confidence 544
No 46
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=97.62 E-value=0.00029 Score=76.23 Aligned_cols=189 Identities=11% Similarity=-0.015 Sum_probs=115.3
Q ss_pred EEcCCceEEEEEeCC-CC-CcEEEecceeecccCCC------C---------cCCcceeccccccccccccEEecccccC
Q psy7893 32 FDNGAWCCRVGWASC-EK-PNLIFKNLIAKPRKERG------K---------KDGETQVGNDISNIEAVRFQLKTQFDKN 94 (691)
Q Consensus 32 ID~GS~~~KaG~age-~~-P~~viPs~vg~~~~~~~------~---------~~~~~~vG~ea~~~~~~~~~l~~Pi~~G 94 (691)
||+|-+++|+-+.+. .. =+.+|||+++....... . ....++||+.+...... ...+-+...
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~--~~~~~~~~~ 79 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT--NRARQLHDE 79 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC--ccceecccc
Confidence 799999999866432 22 24678998866422210 0 01234677665321110 011122222
Q ss_pred cccCHHHHHHHHHHHHhhcCCCCCCCCCccEEEEecCCCc-hHHHHHHHHHHHHh--------cCCCeEeechhhHHhhh
Q psy7893 95 VVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNP-NYSRSLMSELLFEC--------YQVPSVCYGIDSLFSYQ 165 (691)
Q Consensus 95 ~I~nwd~~e~iw~~~f~~L~i~~~~~~~~pvLltEp~~~~-~~~re~l~EilFE~--------f~vp~v~~~~~alla~y 165 (691)
+..+ +....++.+++...+.+ . -..|+|--|... ...++.+.+.+-.. +.+..|.+.+|++.|++
T Consensus 80 ~~~~-~~~~~L~~~Al~~~~~~-~----~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~ 153 (320)
T TIGR03739 80 YTET-PEYMALLRGALALSKVR-E----IDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALV 153 (320)
T ss_pred ccCC-HHHHHHHHHHHHHhcCC-C----CCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHH
Confidence 2222 35667777777544432 1 124555544443 55667776665432 56778889999988876
Q ss_pred hccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhC
Q psy7893 166 YNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKY 241 (691)
Q Consensus 166 a~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~ 241 (691)
...... +. ........+|||+|+.+|.++.+-++.+....+..++.|-..+.+.+.+.|..++
T Consensus 154 ~~~~~~--~~-----------~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~ 216 (320)
T TIGR03739 154 HFVAQH--GK-----------LLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDI 216 (320)
T ss_pred HHHhcC--CC-----------cccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhhc
Confidence 541000 10 0002356799999999999998888888888888889999999999999998764
No 47
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.48 E-value=0.00046 Score=77.07 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=102.9
Q ss_pred CCCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHH
Q psy7893 24 RDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQE 103 (691)
Q Consensus 24 ~~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e 103 (691)
+..-..|=||+||.+|.+=|+ ++.+.|.-+...-.. ..++..+.... + -....|+......|-+.++
T Consensus 3 ~~~i~SVGIDIGTsTTqlvfS-----rl~l~n~a~~~~vpr-----~~I~dkev~yr-S--~i~fTPl~~~~~ID~~~i~ 69 (475)
T PRK10719 3 TEELLSVGIDIGTTTTQVIFS-----RLELENRASVFQVPR-----IEIIDKEIIYR-S--PIYFTPLLKQGEIDEAAIK 69 (475)
T ss_pred ccEEEEEEEeccCceEEEEEE-----EEEEecccccccCce-----EEEeeeEEEEe-c--CceecCCCCCccccHHHHH
Confidence 334457889999999999787 233333221110000 00222222111 1 1234688888889999999
Q ss_pred HHHHHHHhhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHH---HhcCCCeEeechhhHHhhhhccCCCCCCcccccc
Q psy7893 104 QIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLF---ECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCG 180 (691)
Q Consensus 104 ~iw~~~f~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilF---E~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~ 180 (691)
.+.+.-|.+-++.+++....-.++|- ..+...+-.+..+.+= ..|=|...-+-..++++.+|+ |.
T Consensus 70 ~~V~~ey~~Agi~~~die~~ahIITg-~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~AS------g~----- 137 (475)
T PRK10719 70 ELIEEEYQKAGIAPESIDSGAVIITG-ETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGA------GA----- 137 (475)
T ss_pred HHHHHHHHHcCCCHHHccccEEEEEe-chhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHh------hH-----
Confidence 99999888778877643223344444 3333333333333210 111111111223334444444 32
Q ss_pred ccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHH
Q psy7893 181 YQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHH 232 (691)
Q Consensus 181 ~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~y 232 (691)
..+ +..+....++||+|+++|+++-+.+|.++ ....+++||+++|+-
T Consensus 138 -avL--seEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D 184 (475)
T PRK10719 138 -QTL--SEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD 184 (475)
T ss_pred -HHh--hhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence 111 11445788999999999999999999998 667889999998854
No 48
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.38 E-value=0.0058 Score=66.84 Aligned_cols=212 Identities=16% Similarity=0.107 Sum_probs=116.4
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCC----C---C-c--------CCc---ceeccccccccccccEEe
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER----G---K-K--------DGE---TQVGNDISNIEAVRFQLK 88 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~----~---~-~--------~~~---~~vG~ea~~~~~~~~~l~ 88 (691)
.++-||+|-++||.-+... ...+|+.++...... + . . ... +++|.++....... .-.
T Consensus 3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~-~~~ 78 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTG-KDT 78 (344)
T ss_pred eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhccccc-CCc
Confidence 4788999999999865422 245688776543111 0 0 0 112 56776653221100 000
Q ss_pred cccccCcccCHHHHHHHHHHHHh-hcCCC-CCCCCCccEEEEecCCCc-hHH-HHHHHHHHHHh-----------cCCCe
Q psy7893 89 TQFDKNVVTHYDIQEQIFDYAFS-HLSIN-TEGNVNHPIVLTEPFLNP-NYS-RSLMSELLFEC-----------YQVPS 153 (691)
Q Consensus 89 ~Pi~~G~I~nwd~~e~iw~~~f~-~L~i~-~~~~~~~pvLltEp~~~~-~~~-re~l~EilFE~-----------f~vp~ 153 (691)
+-.+..+ .-+....++..++. .+... +.+ ....+|.|--|... ... ++.+.+.+-.. ..+..
T Consensus 79 ~~~~~~y--~~~~y~~L~~~Al~~~~~~~~~~~-~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~ 155 (344)
T PRK13917 79 YSTNDRY--DIKQFKTLVKCALAGLAARTVPEE-VVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKG 155 (344)
T ss_pred ccccccc--cchhHHHHHHHHHHHhhhhhcCCC-cceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEE
Confidence 1112222 13356677766652 22111 111 12233435544433 222 24454443222 34567
Q ss_pred EeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHH
Q psy7893 154 VCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 233 (691)
Q Consensus 154 v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL 233 (691)
|.+.+|++.|++..... ..|. ...........+|||+|+++|.++.+.+|.++...+..++.|+..+-+.+
T Consensus 156 V~V~pQ~~ga~~~~~~~-~~g~--------~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I 226 (344)
T PRK13917 156 VKVVAQPMGTLLDLYLD-NDGV--------VADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRI 226 (344)
T ss_pred EEEecccHHHHHHHHhc-ccCc--------ccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHH
Confidence 88889999888765110 0010 00011123467999999999999999999999888888999999999999
Q ss_pred HHHHhhhCCCCCCCCChHHHHHHH
Q psy7893 234 HKLLQLKYPSHINSITPSRSEELL 257 (691)
Q Consensus 234 ~~lL~~~~~~~~~~~~~~~~e~IK 257 (691)
.+.++.+.... ..+...++.+.
T Consensus 227 ~~~i~~~~~~~--~~~~~~ie~~l 248 (344)
T PRK13917 227 ASHISKKEEGA--SITPYMLEKGL 248 (344)
T ss_pred HHHHHhhCCCC--CCCHHHHHHHH
Confidence 99996543321 23444455443
No 49
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.78 E-value=0.0075 Score=67.58 Aligned_cols=171 Identities=13% Similarity=0.090 Sum_probs=103.9
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHHHHHHH
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDY 108 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~iw~~ 108 (691)
.|=||+||.+|.+=|+. +.+-|.-+-..-.. ..+++.+....+. ....|+......|-+.++.|...
T Consensus 5 SVGIDIGTSTTQlvfSr-----l~l~n~a~~~~vPr-----i~I~dkeViYrS~---I~fTPl~~~~~ID~~al~~iv~~ 71 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSR-----LTLENRASGFSVPR-----IEIVDKEVIYRSP---IYFTPLLSQTEIDAEALKEIVEE 71 (473)
T ss_pred EEEEeecCCceeEEEEE-----eEEEeccCCCccce-----EEEeccEEEecCC---ccccCCCCCCccCHHHHHHHHHH
Confidence 57899999999987773 22222111000000 0023333222111 23468988888999999999999
Q ss_pred HHhhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeec---hhhHHhhhhccCCCCCCccccccccccc
Q psy7893 109 AFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYG---IDSLFSYQYNGWEGQSGVIISCGYQVYQ 185 (691)
Q Consensus 109 ~f~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~---~~alla~ya~~~~~~~G~~~~~~~~~~~ 185 (691)
-|++-++.|++...-.|++|--..- +++-+.+.+.|-+..|==-|..+ -.+++|..|+ |. ..
T Consensus 72 eY~~Agi~p~~I~TGAVIITGETAr-KeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGs------GA--------~~ 136 (473)
T PF06277_consen 72 EYRKAGITPEDIDTGAVIITGETAR-KENAREVLHALSGFAGDFVVATAGPDLESIIAGKGS------GA--------AA 136 (473)
T ss_pred HHHHcCCCHHHCccccEEEecchhh-hhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCc------cH--------HH
Confidence 9988888887544556777754332 22233333344332221111111 2367777776 53 22
Q ss_pred cCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHH
Q psy7893 186 YNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSV 229 (691)
Q Consensus 186 ~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~l 229 (691)
++.....+-+=||||.++|.++-+-+|.++ ..-.+++||+.+
T Consensus 137 ~S~~~~~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi 178 (473)
T PF06277_consen 137 LSKEHHTVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLI 178 (473)
T ss_pred HhhhhCCeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEE
Confidence 233345777889999999999999999999 666789999854
No 50
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=96.69 E-value=0.015 Score=62.98 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=90.8
Q ss_pred EEEEcCCceEEEEEeCCCC-CcEEEecceeecccCCCCcCCcceecccc---ccccccccEEecccccCccc----CH--
Q psy7893 30 IVFDNGAWCCRVGWASCEK-PNLIFKNLIAKPRKERGKKDGETQVGNDI---SNIEAVRFQLKTQFDKNVVT----HY-- 99 (691)
Q Consensus 30 vVID~GS~~~KaG~age~~-P~~viPs~vg~~~~~~~~~~~~~~vG~ea---~~~~~~~~~l~~Pi~~G~I~----nw-- 99 (691)
|.||-|+.++|+.|..+.. -+.+.|+..... ...+ +.|+.. +...+..+.+ -|.....+. +|
T Consensus 3 i~iDdG~~~~K~~~~~~~~~~~~~~~~s~~~~-~~~~------~~~~~~~~~y~v~g~~yt~-~~~~~~~~~t~~~~y~~ 74 (318)
T PF06406_consen 3 IAIDDGSTNVKLAWYEDGKIKTSISPNSFRSG-WKVS------FMGDSKSFNYEVDGEKYTV-DEVSSDALDTTHVDYQY 74 (318)
T ss_dssp EEEEE-SSEEEEEEE-SS-EEEEEEE--EESS-----------S-SSS---EEESSSSEEEE-STTBTTTTSS-HGGGGG
T ss_pred EEEecCCCceeEEEecCCeEEEEecccccccc-cccc------ccCCCceeEEEECCEEEEE-cCCCCcccccccccccc
Confidence 8999999999999985432 123445543222 1111 111110 1111111222 233222221 22
Q ss_pred -HHHHHHHHHHHhhcCCCCCCCCCccEEEEecCC---Cch--HHHHHHHH----HHH-------HhcCCCeEeechhhHH
Q psy7893 100 -DIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFL---NPN--YSRSLMSE----LLF-------ECYQVPSVCYGIDSLF 162 (691)
Q Consensus 100 -d~~e~iw~~~f~~L~i~~~~~~~~pvLltEp~~---~~~--~~re~l~E----ilF-------E~f~vp~v~~~~~all 162 (691)
+.-.-...|++.+-|+.+. +..++++-|.. ... ..++.+.. ++. ..+.+..|.+.+|++.
T Consensus 75 s~~n~~av~haL~~~G~~~~---~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~ 151 (318)
T PF06406_consen 75 SDLNLVAVHHALLKAGLEPQ---DVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVG 151 (318)
T ss_dssp SHHHHHHHHHHHHHHS--SS---EEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHH
T ss_pred chhhHHHHHHHHHHcCCCCC---CeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHH
Confidence 2223455677766677665 45566665522 111 11222221 111 1344678899999999
Q ss_pred hhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCe-EEeeccHHHHHHHHHHHHhh
Q psy7893 163 SYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKA-KRIDLGGFSVIHHLHKLLQL 239 (691)
Q Consensus 163 a~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~-~ri~iGG~~lt~yL~~lL~~ 239 (691)
|+|.. -. ...+..+.+|||||+.+|.++.|.++......+ ...++|-..+.+.+.+.|..
T Consensus 152 A~~~~------~~-----------~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 152 AVFDA------LM-----------DLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp HHHHH------HH-----------TS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred HHHHH------HH-----------hhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 98875 21 011226789999999999999888776543333 34578999999999988864
No 51
>KOG0100|consensus
Probab=96.58 E-value=0.12 Score=56.36 Aligned_cols=97 Identities=13% Similarity=0.022 Sum_probs=59.0
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCce
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~ 203 (691)
.-++|.|......+|+..-. .=---|..-+-+++.|.+|+.+. |.+ ......+-||.|.|.++
T Consensus 174 ~AVvTvPAYFNDAQrQATKD-AGtIAgLnV~RIiNePTaAAIAY------GLD----------Kk~gEknilVfDLGGGT 236 (663)
T KOG0100|consen 174 HAVVTVPAYFNDAQRQATKD-AGTIAGLNVVRIINEPTAAAIAY------GLD----------KKDGEKNILVFDLGGGT 236 (663)
T ss_pred ceEEecchhcchHHHhhhcc-cceeccceEEEeecCccHHHHHh------ccc----------ccCCcceEEEEEcCCce
Confidence 34556665555555554322 11122445566788888887777 431 11123788999999999
Q ss_pred EEEEEe--ecCee-cccCeEEeeccHHHHHHHHHHHH
Q psy7893 204 THVIPV--INGCI-DASKAKRIDLGGFSVIHHLHKLL 237 (691)
Q Consensus 204 T~IvPV--~dG~v-l~~a~~ri~iGG~~lt~yL~~lL 237 (691)
-.|.-. -+|.- +....--..+||.++++..++.+
T Consensus 237 FDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 237 FDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred EEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 877654 44532 22333455799999998777655
No 52
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.3 Score=52.51 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=52.1
Q ss_pred EEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHheeeeccHHHHHH
Q psy7893 194 GVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 272 (691)
Q Consensus 194 gLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~~cyva~dy~~el~ 272 (691)
.+|+|||+..|.+.-+++|.++ -.+.+++||+++|+.+.+..+ ++...++++|... -...||..+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~-~~P~~y~~~vl 261 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGG-TLPTDYGSEVL 261 (354)
T ss_pred heeeeecccceEEEEEECCeee--eEeeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCC-CCCCchhHHHH
Confidence 4699999999999999999998 568899999999999887653 3445567777543 23457777654
No 53
>KOG0104|consensus
Probab=95.24 E-value=0.5 Score=55.44 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=71.4
Q ss_pred ccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccc--cCCCCCceEEEEEeC
Q psy7893 123 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQ--YNGWEGQSGVIISCG 200 (691)
Q Consensus 123 ~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~--~~~~~~~sgLVVDiG 200 (691)
.-+++|.|++-....|..+.+.. .-.|..-++++++..+++... |. ++ .....++.-+|-|+|
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~y------gv--------~rRk~i~~~~q~~i~YDMG 223 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNY------GV--------FRRKEINETPQHYIFYDMG 223 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhh------hh--------hccccCCCCceEEEEEecC
Confidence 35999999999999888877664 445788888898887776655 32 10 122245888999999
Q ss_pred CceEEEEEeecCee----cc---cCeE------EeeccHHHHHHHHHHHHhhh
Q psy7893 201 YQCTHVIPVINGCI----DA---SKAK------RIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 201 ~~~T~IvPV~dG~v----l~---~a~~------ri~iGG~~lt~yL~~lL~~~ 240 (691)
.++|.++-|.--.+ .. ..++ ...+||..++..|..+|...
T Consensus 224 s~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 224 SGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred CCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 99999888742111 10 1111 22579999999998888654
No 54
>KOG0101|consensus
Probab=94.90 E-value=0.33 Score=56.54 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=66.7
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCce
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~ 203 (691)
.+++|.|......+| +.++-.-.-.|++.+-++..+.+++.+. |.. .......+-+|.|.|+++
T Consensus 145 ~aviTVPa~F~~~Qr-~at~~A~~iaGl~vlrii~EPtAaalAy------gl~---------k~~~~~~~VlI~DlGggt 208 (620)
T KOG0101|consen 145 KAVVTVPAYFNDSQR-AATKDAALIAGLNVLRIINEPTAAALAY------GLD---------KKVLGERNVLIFDLGGGT 208 (620)
T ss_pred eEEEEecCCcCHHHH-HHHHHHHHhcCCceeeeecchHHHHHHh------hcc---------ccccceeeEEEEEcCCCc
Confidence 577777665555544 4555555677889999999998887776 420 011123667999999999
Q ss_pred EEEEEee-cCee--cccCeEEeeccHHHHHHHHHHHH
Q psy7893 204 THVIPVI-NGCI--DASKAKRIDLGGFSVIHHLHKLL 237 (691)
Q Consensus 204 T~IvPV~-dG~v--l~~a~~ri~iGG~~lt~yL~~lL 237 (691)
..|.++. .|.. +....--.++||.++++.|.+.+
T Consensus 209 fdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 209 FDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred eeeeeEEeccchhhhhhhcccccccchhhhHHHHHHH
Confidence 9998883 3322 23334446899999999887765
No 55
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=94.42 E-value=0.03 Score=55.92 Aligned_cols=143 Identities=14% Similarity=0.022 Sum_probs=89.2
Q ss_pred CceEEEEcCCceEEEEEeC-CCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHHHH
Q psy7893 27 SLPIVFDNGAWCCRVGWAS-CEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 27 ~~~vVID~GS~~~KaG~ag-e~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
.--|=+|+|++.+-.-.-. +..|.... +.....++.|+|.|+-..-.+
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d~~Pvag~-------------------------------~~~advVRDGiVvdf~eavei 77 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRDGQPVAGC-------------------------------LDWADVVRDGIVVDFFEAVEI 77 (277)
T ss_pred ceEEEeecccceEEEEEEcCCCCeEEEE-------------------------------ehhhhhhccceEEehhhHHHH
Confidence 4468899999998865443 33343210 122235667888887544445
Q ss_pred HHHHH----hhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccc
Q psy7893 106 FDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGY 181 (691)
Q Consensus 106 w~~~f----~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~ 181 (691)
.+... ++|++.-. | ---.-||-+... -.++.--+.|.-|...++.+..+.++++-. +.
T Consensus 78 Vrrlkd~lEk~lGi~~t----h-a~taiPPGt~~~-~~ri~iNViESAGlevl~vlDEPTAaa~vL------~l------ 139 (277)
T COG4820 78 VRRLKDTLEKQLGIRFT----H-AATAIPPGTEQG-DPRISINVIESAGLEVLHVLDEPTAAADVL------QL------ 139 (277)
T ss_pred HHHHHHHHHHhhCeEee----e-ccccCCCCccCC-CceEEEEeecccCceeeeecCCchhHHHHh------cc------
Confidence 44443 35665321 0 000112222110 111222345788999999999999988877 77
Q ss_pred cccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHH
Q psy7893 182 QVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVI 230 (691)
Q Consensus 182 ~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt 230 (691)
..|.|||+|.++|-|.-+-.|.++..+ --+.||.++|
T Consensus 140 ----------~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmt 176 (277)
T COG4820 140 ----------DDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMT 176 (277)
T ss_pred ----------CCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEE
Confidence 999999999999999999999998544 3467887765
No 56
>PRK10854 exopolyphosphatase; Provisional
Probab=93.22 E-value=1 Score=52.13 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=88.3
Q ss_pred CCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHHHH
Q psy7893 26 SSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQI 105 (691)
Q Consensus 26 ~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~i 105 (691)
....-|||+||+++|.-.+.-. +. .+ ..+...+. ..-+|+.. ...|. .+.+.++..
T Consensus 10 ~~~~A~IDIGSNSirL~I~e~~-~~-~~-~~i~~~k~-------~vrLg~g~-------------~~~g~-Ls~e~~~r~ 65 (513)
T PRK10854 10 PQEFAAVDLGSNSFHMVIARVV-DG-AM-QIIGRLKQ-------RVHLADGL-------------DSDNM-LSEEAMERG 65 (513)
T ss_pred CCEEEEEEeccchheEEEEEec-CC-cE-EEeeeeeE-------EEECCCCc-------------CCCCC-cCHHHHHHH
Confidence 3457899999999998776421 11 00 11111110 00123221 12333 455666666
Q ss_pred HHHH--Hhh-cC-CCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhccCCCCCCccccc
Q psy7893 106 FDYA--FSH-LS-INTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGWEGQSGVIISC 179 (691)
Q Consensus 106 w~~~--f~~-L~-i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~--~~~alla~ya~~~~~~~G~~~~~ 179 (691)
++-+ |.. +. .... +..++-|. ..-.-.++....+.+.+..|++-=.+ ...+-+++.|... +.
T Consensus 66 ~~~L~~F~~~~~~~~v~---~v~~vATs-AlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~----~l---- 133 (513)
T PRK10854 66 LNCLSLFAERLQGFSPA---NVCIVGTH-TLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEH----TQ---- 133 (513)
T ss_pred HHHHHHHHHHHHhCCCC---eEEEEehH-HHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhc----cc----
Confidence 6543 222 21 1111 23344443 33334557777878888878764333 2345566555511 11
Q ss_pred cccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHH
Q psy7893 180 GYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHH 232 (691)
Q Consensus 180 ~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~y 232 (691)
.....++|||+|+|+|.++-+-+|.+. ....+++|.-.+++.
T Consensus 134 ---------~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~S~~lG~vrl~e~ 175 (513)
T PRK10854 134 ---------PEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSFAQL 175 (513)
T ss_pred ---------CCCCCeEEEEeCCCeEEEEEecCCCee--EeEEEecceeeHHhh
Confidence 012568999999999999999888765 345568998888773
No 57
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=93.17 E-value=0.99 Score=48.42 Aligned_cols=89 Identities=11% Similarity=0.012 Sum_probs=58.5
Q ss_pred ccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeec---hhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEe
Q psy7893 123 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYG---IDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISC 199 (691)
Q Consensus 123 ~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~---~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDi 199 (691)
..++-|+..- .-.+++.+.+.+.+..|+.- -++ ..+.+++.|... +. ...+++|||+
T Consensus 73 i~~vaTsa~R-~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~----~~--------------~~~~~~v~Di 132 (300)
T TIGR03706 73 VRAVATAALR-DAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAH----TL--------------PIADGLVVDI 132 (300)
T ss_pred EEEEEcHHHH-cCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHh----CC--------------CCCCcEEEEe
Confidence 3444444433 34567778888887777643 333 345555555411 11 1134699999
Q ss_pred CCceEEEEEeecCeecccCeEEeeccHHHHHHHH
Q psy7893 200 GYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 233 (691)
Q Consensus 200 G~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL 233 (691)
|.++|.++-+.+|.+. ....+++|.-.+++.+
T Consensus 133 GGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 133 GGGSTELILGKDFEPG--EGVSLPLGCVRLTEQF 164 (300)
T ss_pred cCCeEEEEEecCCCEe--EEEEEccceEEhHHhh
Confidence 9999999998888776 5678899988888764
No 58
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=92.87 E-value=1.4 Score=50.66 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=58.2
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCC
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGY 201 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~--~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~ 201 (691)
.++-|.. .-.-.+++...+-+.+..|++-=.+ ...+-+++.|... +. + ....++|||+|+
T Consensus 80 ~~vATsA-vReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~----~l-----------~--~~~~~lviDIGG 141 (496)
T PRK11031 80 RVVATAT-LRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAH----TT-----------G--GADQRLVVDIGG 141 (496)
T ss_pred EEEEeHH-HHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhh----cc-----------C--CCCCEEEEEecC
Confidence 3444433 3334556777777778777764322 3445666655411 11 0 114589999999
Q ss_pred ceEEEEEeecCeecccCeEEeeccHHHHHHHH
Q psy7893 202 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 233 (691)
Q Consensus 202 ~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL 233 (691)
|+|.++-+-+|.+. ....+++|.-.+++.+
T Consensus 142 GStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 142 ASTELVTGTGAQAT--SLFSLSMGCVTWLERY 171 (496)
T ss_pred CeeeEEEecCCcee--eeeEEeccchHHHHHh
Confidence 99999998888876 5678899998877543
No 59
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=92.60 E-value=0.78 Score=49.27 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=93.4
Q ss_pred cCCCCceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHH
Q psy7893 23 LRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQ 102 (691)
Q Consensus 23 ~~~~~~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~ 102 (691)
|+..-..|=||+|+.++.+=|+.- .+-|......-.. ..++-.++ .++. -.+-.|+..---.|-+++
T Consensus 1 Mte~ilSVGIDiGTsTTQvifS~l-----el~Nmas~~~VPr-----i~ii~kdi-~~rS--~i~FTPv~~q~~id~~al 67 (473)
T COG4819 1 MTEQILSVGIDIGTSTTQVIFSKL-----ELVNMASVSQVPR-----IEIIKKDI-SWRS--PIFFTPVDKQGGIDEAAL 67 (473)
T ss_pred CcceeeeeeeeccCceeeeeeeee-----EEeecccccccce-----EEEEecce-eeec--ceeeeeecccCCccHHHH
Confidence 333445788999999999977732 1111111100000 00111111 1111 123457766555678888
Q ss_pred HHHHHHHHhhcCCCCCCCCCccEEEEecCCCchHHHHHHHHH--HHHhcCCCeEeechhhHHhhhhccCCCCCCcccccc
Q psy7893 103 EQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSEL--LFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCG 180 (691)
Q Consensus 103 e~iw~~~f~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~Ei--lFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~ 180 (691)
+.+...-+..-++.|++.....|++|--..-....|..+.-+ +.-.|=|...----.++.|--|+ |.
T Consensus 68 k~~v~eeY~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGa------GA----- 136 (473)
T COG4819 68 KKLVLEEYQAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGA------GA----- 136 (473)
T ss_pred HHHHHHHHHHcCCChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCc------cc-----
Confidence 888877776778888754456778876554333333322211 01122111111111233332233 32
Q ss_pred ccccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHH
Q psy7893 181 YQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSV 229 (691)
Q Consensus 181 ~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~l 229 (691)
+.| +....+.-+=+|+|.++|...-+-.|.+... -.+++||+.+
T Consensus 137 -~t~--Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dT--aCLdiGGRLi 180 (473)
T COG4819 137 -QTL--SEQRLTRVLNLDIGGGTTNYSLFDAGKVSDT--ACLDIGGRLI 180 (473)
T ss_pred -cch--hhhhceEEEEEeccCCccceeeecccccccc--eeeecCcEEE
Confidence 111 1222355667899999999998888988844 4578999854
No 60
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.13 E-value=0.79 Score=52.56 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=86.6
Q ss_pred ceEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHHHHHH
Q psy7893 28 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFD 107 (691)
Q Consensus 28 ~~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~iw~ 107 (691)
..-|||+||++++.=.+--. | -.+..+.+.+..- -+|+-.. ..| ..+-++++..++
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~-~--~~~~~l~~~k~~v-------rLgegl~-------------~~g-~L~~eai~R~~~ 59 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEIT-P--GSFQVLFREKRIV-------RLGEGLD-------------ATG-NLSEEAIERALS 59 (492)
T ss_pred eEEEEEecCCeEEEEEEecc-C--Cccchhhhhhhhe-------ehhcCcc-------------ccC-CcCHHHHHHHHH
Confidence 46799999999998666322 2 1223333222110 1222110 011 124455666665
Q ss_pred HH--Hhh-c-CCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhccCCCCCCccccccc
Q psy7893 108 YA--FSH-L-SINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGWEGQSGVIISCGY 181 (691)
Q Consensus 108 ~~--f~~-L-~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~--~~~alla~ya~~~~~~~G~~~~~~~ 181 (691)
-+ |.+ + +..+. +..+|-|+. +-.-.+.....+.+-+.+|++-=.+ -..+-++++|... +.
T Consensus 60 aL~~f~e~~~~~~~~---~v~~vATsA-~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~----~~------ 125 (492)
T COG0248 60 ALKRFAELLDGFGAE---EVRVVATSA-LRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVAS----TL------ 125 (492)
T ss_pred HHHHHHHHHhhCCCC---EEEEehhHH-HHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHh----cC------
Confidence 43 222 2 22222 323343432 2223344555666666677764333 3457777777622 21
Q ss_pred cccccCCCCCceEEEEEeCCceEEEEEeecCeecccCeEEeeccHHHHHHHH
Q psy7893 182 QVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 233 (691)
Q Consensus 182 ~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL 233 (691)
.....++|+|+|+++|.++-+-+..+. ....+++|+-.+++..
T Consensus 126 -------~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 126 -------PRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERF 168 (492)
T ss_pred -------CCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhh
Confidence 013889999999999999888766655 5567788887776654
No 61
>KOG0103|consensus
Probab=87.46 E-value=9.2 Score=45.04 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=71.6
Q ss_pred CccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCcccccccccccc----CCCCCceEEEE
Q psy7893 122 NHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQY----NGWEGQSGVII 197 (691)
Q Consensus 122 ~~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~----~~~~~~sgLVV 197 (691)
-.+++|..|.+-....|..++... ..-|+.-+-+..+..+++.+. |. |.+ ...++.+-+.|
T Consensus 137 v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~y------gi--------yKtDLP~~~ekpr~v~fv 201 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAY------GI--------YKTDLPENEEKPRNVVFV 201 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhc------cc--------ccccCCCcccCcceEEEE
Confidence 357899999998888888877665 345777788887776665555 32 221 12235789999
Q ss_pred EeCCceEEEEEee-c-Cee-cccCeEEeeccHHHHHHHHHHHHhhh
Q psy7893 198 SCGYQCTHVIPVI-N-GCI-DASKAKRIDLGGFSVIHHLHKLLQLK 240 (691)
Q Consensus 198 DiG~~~T~IvPV~-d-G~v-l~~a~~ri~iGG~~lt~yL~~lL~~~ 240 (691)
|+||+.++++-.. + |.. +.....--.+||++++..|.+.+...
T Consensus 202 D~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 202 DIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred ecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 9999999987663 2 221 22333334799999999888887654
No 62
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=85.21 E-value=0.39 Score=53.34 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=49.4
Q ss_pred cChHHHHHHHhccCCHHHH-HHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcC
Q psy7893 556 AGISETLNFVLNSYPQHIA-QSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 632 (691)
Q Consensus 556 ~Gl~e~i~~si~~~~~d~r-~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas 632 (691)
+||...|..-+.. .-.+ ..+-..|+++||.++.+|+...|.+.| ..+|+.+++|++..-+||+++|+
T Consensus 335 AGl~~SIa~rv~~--~l~~~~~i~~~VvftGGva~N~gvv~ale~~L--------g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 335 AAACHSVAEQVYE--QQLQEIDVREPVILVGGTSLIEGLVKALGDLL--------GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHH--HHhhcCCCCCcEEEECChhhhHHHHHHHHHHh--------CCcEEECCcccHHHHHHHHHHhc
Confidence 4666665543321 1012 234445999999999999999999886 35788899999999999999985
No 63
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=84.98 E-value=3.2 Score=43.99 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=59.8
Q ss_pred ccEEEEecCCCchHHHHHHHHHHHHhcCCCeEeec--hhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeC
Q psy7893 123 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYG--IDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCG 200 (691)
Q Consensus 123 ~pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~--~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG 200 (691)
..++-|+. +-.-.++..+.+.+.+..|++--.+- ..+.+++.|... +. ....+++|||+|
T Consensus 59 i~~vATsA-~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~----~l-------------~~~~~~lviDIG 120 (285)
T PF02541_consen 59 IRAVATSA-LREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLS----SL-------------PPDKNGLVIDIG 120 (285)
T ss_dssp EEEEEEHH-HHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHH----HS-------------TTTSSEEEEEEE
T ss_pred EEEEhhHH-HHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHh----hc-------------cccCCEEEEEEC
Confidence 34444443 33345567788888888887654432 345566555411 00 123789999999
Q ss_pred CceEEEEEeecCeecccCeEEeeccHHHHHHHH
Q psy7893 201 YQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 233 (691)
Q Consensus 201 ~~~T~IvPV~dG~vl~~a~~ri~iGG~~lt~yL 233 (691)
.++|.++.+-+|.+. ....+++|.-.+++.+
T Consensus 121 GGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 121 GGSTELILFENGKVV--FSQSLPLGAVRLTERF 151 (285)
T ss_dssp SSEEEEEEEETTEEE--EEEEES--HHHHHHHH
T ss_pred CCceEEEEEECCeee--EeeeeehHHHHHHHHH
Confidence 999999999999987 6678999998887765
No 64
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=83.87 E-value=0.92 Score=47.20 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=37.1
Q ss_pred CEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhh
Q psy7893 580 NIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQF 630 (691)
Q Consensus 580 nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasil 630 (691)
.|+|+||.+..+++.++|.+.| .+.|..+++|.+.+-+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKL--------GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHh--------CCcEEcCCCccHHHHHHHHhC
Confidence 7999999999999999999886 356788889988888888753
No 65
>PRK13317 pantothenate kinase; Provisional
Probab=83.30 E-value=0.98 Score=48.07 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=53.0
Q ss_pred cChHHHHHHHhccCCHH-HHHHhhcCEEEec-cCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcC
Q psy7893 556 AGISETLNFVLNSYPQH-IAQSLANNIFVTG-SLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 632 (691)
Q Consensus 556 ~Gl~e~i~~si~~~~~d-~r~~L~~nI~LtG-G~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas 632 (691)
+||..+|.+.|..+..- .|..-.++|+++| |.+..|++.++|.+.+.. ...+++.+++|.+..-+||++++.
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 46767776666443211 1323347899999 799999999999987643 346788899999999999998765
No 66
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=82.67 E-value=0.8 Score=48.25 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=40.5
Q ss_pred cCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhc
Q psy7893 579 NNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 631 (691)
Q Consensus 579 ~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasila 631 (691)
.+|++|||.+.-+|+.+.|+++|... ...+.|..+++|++..-+||++||
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999988532 134556667899999999999875
No 67
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=82.41 E-value=1 Score=50.02 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=43.4
Q ss_pred hhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhc
Q psy7893 577 LANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 631 (691)
Q Consensus 577 L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasila 631 (691)
+-..|++|||.+.-+||...|.+.|..-.+ ..+|+.+++|++..-+||++||
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 456799999999999999999998854322 3568889999999999999876
No 68
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=82.31 E-value=9.7 Score=40.45 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEee-cCe
Q psy7893 135 NYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVI-NGC 213 (691)
Q Consensus 135 ~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~-dG~ 213 (691)
+-.-+.+++.+=+.+|++.-.-+..+-+|..|+.+ .||. ..--.|+|+|.++|...-|- +|.
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALT--TPGt---------------~~PlaIlDmG~GSTDAsii~~~g~ 156 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALT--TPGT---------------DKPLAILDMGGGSTDASIINRDGE 156 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTT--STT-----------------SSEEEEEE-SSEEEEEEE-TTS-
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccC--CCCC---------------CCCeEEEecCCCcccHHHhCCCCc
Confidence 34446788889999999999999999999888733 2243 25567899999999987773 554
Q ss_pred ecccCeEEeeccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHH-heeeec
Q psy7893 214 IDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD-YGFVAT 265 (691)
Q Consensus 214 vl~~a~~ri~iGG~~lt~yL~~lL~~~~~~~~~~~~~~~~e~IKe~-~cyva~ 265 (691)
+. ..++-=+|..+|-.+..-|-.. +..++|+||+- +|.|-.
T Consensus 157 v~---~iHlAGAG~mVTmlI~sELGl~--------d~~lAE~IKkyPlaKVEs 198 (332)
T PF08841_consen 157 VT---AIHLAGAGNMVTMLINSELGLE--------DRELAEDIKKYPLAKVES 198 (332)
T ss_dssp EE---EEEEE-SHHHHHHHHHHHCT-S---------HHHHHHHHHS-EEEEEC
T ss_pred EE---EEEecCCchhhHHHHHHhhCCC--------CHHHHHHhhhcchhhhcc
Confidence 42 3445566788888777666322 46789999974 566643
No 69
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=82.11 E-value=18 Score=39.34 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=22.9
Q ss_pred ceEEEEEeCCceEEEEEeecCeec
Q psy7893 192 QSGVIISCGYQCTHVIPVINGCID 215 (691)
Q Consensus 192 ~sgLVVDiG~~~T~IvPV~dG~vl 215 (691)
..+|+||+|..+|.|+||.+|.+.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~G~p~ 151 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIIDGEVA 151 (318)
T ss_pred CCEEEEEcCccceeeEEecCCEee
Confidence 779999999999999999999986
No 70
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=80.15 E-value=7.7 Score=35.69 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=41.1
Q ss_pred EEEEeCCceEEEEEeecCeecccCeEEeecc--------HHHHH--HHHHHHHhhhCCCCCCCCChHHHHHH-HHHheee
Q psy7893 195 VIISCGYQCTHVIPVINGCIDASKAKRIDLG--------GFSVI--HHLHKLLQLKYPSHINSITPSRSEEL-LWDYGFV 263 (691)
Q Consensus 195 LVVDiG~~~T~IvPV~dG~vl~~a~~ri~iG--------G~~lt--~yL~~lL~~~~~~~~~~~~~~~~e~I-Ke~~cyv 263 (691)
++||+|.+.|.++-...|... .+.-+++| |..++ +.+.+-|+. ....+|.+ |.+.+.+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 689999999999888887765 47888999 99999 888777743 34568888 8776655
Q ss_pred e
Q psy7893 264 A 264 (691)
Q Consensus 264 a 264 (691)
.
T Consensus 71 ~ 71 (120)
T PF14450_consen 71 Y 71 (120)
T ss_dssp -
T ss_pred E
Confidence 4
No 71
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=79.69 E-value=0.87 Score=48.71 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=47.8
Q ss_pred cChHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEE-eccCCccceeehhhhhcC
Q psy7893 556 AGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVS-LAENPELDAWSGARQFSL 632 (691)
Q Consensus 556 ~Gl~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~-~~~dp~~~aW~Gasilas 632 (691)
+||.+.|.+-+... --|..+-..|++|||.+.-+|+.+.|.++|. .+|. .+.+|++..-+||+++|.
T Consensus 220 aGl~~sia~rv~~~--~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg--------~~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 220 AAYCQAMAERVVSL--LERIGVEEGFFITGGIAKNPGVVKRIERILG--------IKAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred HHHHHHHHHHHHHH--hcccCCCCCEEEECcccccHHHHHHHHHHhC--------CCceeCCCCccHHHHHHHHHHHH
Confidence 46766666333111 1123455679999999999999999999873 2343 366899999999999984
No 72
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=73.36 E-value=64 Score=33.45 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=34.3
Q ss_pred ceEEEEEeCCceEEEEEeecCeecccCe-EEeeccHHHHHHHHHHHH
Q psy7893 192 QSGVIISCGYQCTHVIPVINGCIDASKA-KRIDLGGFSVIHHLHKLL 237 (691)
Q Consensus 192 ~sgLVVDiG~~~T~IvPV~dG~vl~~a~-~ri~iGG~~lt~yL~~lL 237 (691)
....|||+|.+.|.++-+-+|.+..... .....|+..+++.+.+.|
T Consensus 91 ~~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 91 EARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CCCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 3446999999999999999888763332 345678777777776665
No 73
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=70.59 E-value=2.5 Score=46.39 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=41.3
Q ss_pred EEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcCc
Q psy7893 581 IFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLS 633 (691)
Q Consensus 581 I~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas~ 633 (691)
||++||+++-.|+..-|.+.| ..+|+.+++|++.--.||+.+|+-
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHhh
Confidence 999999999999999999885 468999999999999999998874
No 74
>PRK13324 pantothenate kinase; Reviewed
Probab=68.61 E-value=1.3e+02 Score=31.64 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.4
Q ss_pred eEEEEcCCceEEEEEeCC
Q psy7893 29 PIVFDNGAWCCRVGWASC 46 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age 46 (691)
-++||+|-.++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 378999999999998754
No 75
>PRK03011 butyrate kinase; Provisional
Probab=67.58 E-value=81 Score=34.89 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=33.8
Q ss_pred cCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhh
Q psy7893 579 NNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGAR 628 (691)
Q Consensus 579 ~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gas 628 (691)
.-|+||||.+.-+-|.++|.+.+..+ .++.|+.+.+..-+.-.||.
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~----~pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFI----APVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhh----CCeEEEeCCCHHHHHHHHHH
Confidence 55999999998777888888888776 35788877766444445544
No 76
>PRK13321 pantothenate kinase; Reviewed
Probab=66.71 E-value=84 Score=32.83 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.7
Q ss_pred EEEEcCCceEEEEEeCCC
Q psy7893 30 IVFDNGAWCCRVGWASCE 47 (691)
Q Consensus 30 vVID~GS~~~KaG~age~ 47 (691)
+.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999988644
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=64.55 E-value=8.6 Score=41.13 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=20.5
Q ss_pred ceEEEEEeCCceEEEEEeecCeec
Q psy7893 192 QSGVIISCGYQCTHVIPVINGCID 215 (691)
Q Consensus 192 ~sgLVVDiG~~~T~IvPV~dG~vl 215 (691)
.++|+||+|..+|+|.+|.+|.+.
T Consensus 77 ~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 77 ENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred CCEEEEeCCCCEEEEEEEECCeee
Confidence 899999999999999999999985
No 78
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=63.47 E-value=1.2 Score=46.86 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=44.6
Q ss_pred hHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhc
Q psy7893 558 ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 631 (691)
Q Consensus 558 l~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasila 631 (691)
|.+.+...+.+++.... .|+|+||...-..+.+.|...|....+. +.+.....|.+.+..||.+||
T Consensus 206 la~~i~~~~~~~~~~~~-----~v~l~GGv~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEKE-----PVVLSGGVFKNSPLVKALRDALKEKLPK---VPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTCTCCCC-----SEEEESGGGGCHHHHHHHGGGS-HHHHC---CTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCC-----eEEEECCccCchHHHHHHHHHHHHhcCC---CceEECCCCCccHHHHHHHhC
Confidence 66666666655542111 1999999988877777776666554443 244556689999999999886
No 79
>PRK13318 pantothenate kinase; Reviewed
Probab=61.23 E-value=2e+02 Score=29.90 Aligned_cols=18 Identities=17% Similarity=0.088 Sum_probs=15.6
Q ss_pred eEEEEcCCceEEEEEeCC
Q psy7893 29 PIVFDNGAWCCRVGWASC 46 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age 46 (691)
.+.||+|..++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 378999999999998763
No 80
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=56.17 E-value=15 Score=37.21 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=41.0
Q ss_pred hHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhh
Q psy7893 558 ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGAR 628 (691)
Q Consensus 558 l~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gas 628 (691)
..+++..-|...+ ...++|+||.+++||+.+-++++| .+.|+.+..|.|..=+|-+
T Consensus 214 MAeIv~~hie~~~-------i~dl~lvGGac~~~g~e~~Fe~~l--------~l~v~~P~~p~y~TPLgIA 269 (277)
T COG4820 214 MAEIVARHIEGQG-------ITDLWLVGGACMQPGVEELFEKQL--------ALQVHLPQHPLYMTPLGIA 269 (277)
T ss_pred HHHHHHHHhccCC-------CcceEEecccccCccHHHHHHHHh--------ccccccCCCcceechhhhh
Confidence 3445555554444 456899999999999999999996 3467777788777766643
No 81
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=55.53 E-value=8.1 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=21.0
Q ss_pred ceEEEEEeCCceEEEEEeecCe
Q psy7893 192 QSGVIISCGYQCTHVIPVINGC 213 (691)
Q Consensus 192 ~sgLVVDiG~~~T~IvPV~dG~ 213 (691)
.+++.||+|..+|.|+||.+|.
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CceEEEecCCcccceEeecchh
Confidence 7899999999999999999997
No 82
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=51.52 E-value=58 Score=32.13 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.8
Q ss_pred ccccCcccCHHHHHHHHHHHHhhc
Q psy7893 90 QFDKNVVTHYDIQEQIFDYAFSHL 113 (691)
Q Consensus 90 Pi~~G~I~nwd~~e~iw~~~f~~L 113 (691)
-+.+|.|.|.+.+...+..+++.+
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~~a 59 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVEEA 59 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHHHH
Confidence 478999999999999999998654
No 83
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=51.47 E-value=2.3e+02 Score=28.40 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=15.0
Q ss_pred EEEEcCCceEEEEEeCCC
Q psy7893 30 IVFDNGAWCCRVGWASCE 47 (691)
Q Consensus 30 vVID~GS~~~KaG~age~ 47 (691)
++||+|-..+|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 799999999999988665
No 84
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=50.47 E-value=9.3 Score=41.88 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=32.5
Q ss_pred hcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcC
Q psy7893 578 ANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 632 (691)
Q Consensus 578 ~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas 632 (691)
+.+|+||||++.+ |.+.|++. .| ++...+||+++--+|...++.
T Consensus 292 ~d~IiL~GGGA~l--l~~~lk~~----f~-----~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGANI--FFDSLSHW----YS-----DVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHHH--HHHHHHHH----cC-----CeEEcCChHHHHHHHHHHHHH
Confidence 5679999999987 55555554 34 246778999998888776665
No 85
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=50.33 E-value=12 Score=32.20 Aligned_cols=25 Identities=52% Similarity=0.740 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhhCCCCcccc
Q psy7893 494 SEEEQERLIELEEILRQHDPEFTSL 518 (691)
Q Consensus 494 ~~~~~~~l~~~~~~l~~~dp~~~~~ 518 (691)
+|.|+..|++||+.|..-||.|...
T Consensus 4 Se~E~r~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 4 SEHEQRRLEEIERQLRADDPRFAAR 28 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5778999999999999999999873
No 86
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=49.51 E-value=1.6e+02 Score=31.06 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=16.1
Q ss_pred eEEEEcCCceEEEEEeCCC
Q psy7893 29 PIVFDNGAWCCRVGWASCE 47 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~ 47 (691)
-++||+|-.+++.|+..+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 3799999999999988743
No 87
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=47.70 E-value=3.6e+02 Score=28.61 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=43.6
Q ss_pred hHHHHHHHhccCCHHHHHHhhcCEEEeccCCCc-cchHHHHHHHHhhcCCC--CceeEEEeccCCccceeehhhhhcC
Q psy7893 558 ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQL-PGFVERLNKDLLENRPF--QSHFSVSLAENPELDAWSGARQFSL 632 (691)
Q Consensus 558 l~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~-~Gf~eRL~~EL~~l~p~--~~~i~V~~~~dp~~~aW~Gasilas 632 (691)
|...|.+.+.-+++ ..|+|.||.+.. +-|.++|.+.++..... ...+.|..+.....++-+||+.++-
T Consensus 239 L~~~i~~~~~~~dP-------~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 239 AGAGLADLASLFNP-------SAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred HHHHHHHHHHHhCC-------CEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 55566666654543 458888887654 56899999888875432 2345666666555666678876543
No 88
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=43.93 E-value=2.1e+02 Score=30.17 Aligned_cols=82 Identities=12% Similarity=-0.081 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCceEEEEEeecCeeccc
Q psy7893 138 RSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDAS 217 (691)
Q Consensus 138 re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~T~IvPV~dG~vl~~ 217 (691)
|-+...--....+... .+.+...+|++|+ - |++ .+......+|||+|-+.|-..-|.+|.+.
T Consensus 129 Rm~av~~~~~~~~~~~-~vmDTg~AAvlGa------l----~d~-----~v~~~~~~~~vniGN~HTlaa~v~~~rI~-- 190 (254)
T PF08735_consen 129 RMRAVRESLGGAGYDE-VVMDTGPAAVLGA------L----CDP-----EVSSREGIIVVNIGNGHTLAALVKDGRIY-- 190 (254)
T ss_pred HHHHHHHHhccCCCCc-eEecCHHHHHhhh------h----cCh-----hhhccCCeEEEEeCCccEEEEEEeCCEEE--
Confidence 3333333334444444 6677777777776 1 111 11234789999999999999999999885
Q ss_pred CeEEe---eccHHHHHHHHHHHH
Q psy7893 218 KAKRI---DLGGFSVIHHLHKLL 237 (691)
Q Consensus 218 a~~ri---~iGG~~lt~yL~~lL 237 (691)
++.-- .+-...|.+||.++-
T Consensus 191 GvfEHHT~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 191 GVFEHHTGMLTPEKLEEYLERLR 213 (254)
T ss_pred EEEecccCCCCHHHHHHHHHHHH
Confidence 22221 244556666666654
No 89
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=42.53 E-value=38 Score=29.79 Aligned_cols=50 Identities=14% Similarity=0.293 Sum_probs=36.6
Q ss_pred ccCcccCHHHHHHHHHHHHhhcCCCCCCCCCccEEEEecCCCchHHHHHHHHHHHHhcC
Q psy7893 92 DKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQ 150 (691)
Q Consensus 92 ~~G~I~nwd~~e~iw~~~f~~L~i~~~~~~~~pvLltEp~~~~~~~re~l~EilFE~f~ 150 (691)
..|+|.|+..++.+++.+.+.| +|..|.-.+++. ...-|.++..+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~~l--------Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVDRL--------DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHHhC--------CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 4799999999999999866543 455555555554 3467899999998763
No 90
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=41.88 E-value=3e+02 Score=28.62 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.4
Q ss_pred EEEEcCCceEEEEEeCCC
Q psy7893 30 IVFDNGAWCCRVGWASCE 47 (691)
Q Consensus 30 vVID~GS~~~KaG~age~ 47 (691)
++||+|-.++++|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 789999999999977554
No 91
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=41.18 E-value=24 Score=32.33 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=30.3
Q ss_pred eEEEEcCCceEEEEEeCCCCCcEEEecceeecccCCCCcCCcceeccccccccccccEEecccccCcccCHHHHHHHHHH
Q psy7893 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDY 108 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~~P~~viPs~vg~~~~~~~~~~~~~~vG~ea~~~~~~~~~l~~Pi~~G~I~nwd~~e~iw~~ 108 (691)
.++||+|+++|++-.+....+... .++ -+|. .-...+++|.|+|.+.+..-++.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~--~vl--------------~~g~----------~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYI--RVL--------------GVGE----------VPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEE--EEE--------------S--------------------HHHHH--HHHHHHHT-
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcE--EEE--------------EEec----------ccccccCCCEEEEHHHHHHHHHH
Confidence 479999999999977765444321 111 1121 11246788999999999888888
Q ss_pred HHh
Q psy7893 109 AFS 111 (691)
Q Consensus 109 ~f~ 111 (691)
.++
T Consensus 55 a~~ 57 (120)
T PF14450_consen 55 AIE 57 (120)
T ss_dssp -HH
T ss_pred HHH
Confidence 874
No 92
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=40.99 E-value=35 Score=36.01 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred ChHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhcC
Q psy7893 557 GISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 632 (691)
Q Consensus 557 Gl~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasilas 632 (691)
-|...+.+.+..+++ +.|+|.||.+..+-|-+++++.+..+ +....+.|..+.....++-+||+.++.
T Consensus 220 ~la~~l~~l~~~~dp-------e~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 220 AIARLIADLKATLDC-------QCVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHhCC-------CEEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECccCCchhhhhHHHHhc
Confidence 377777777776663 46889888887788888898888875 322256777777666777778887653
No 93
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=36.26 E-value=3.6e+02 Score=30.42 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=29.0
Q ss_pred ceEEEEEeCCceEEEEEeecCeecccCeEEeec--cHHHHHHHHHH
Q psy7893 192 QSGVIISCGYQCTHVIPVINGCIDASKAKRIDL--GGFSVIHHLHK 235 (691)
Q Consensus 192 ~sgLVVDiG~~~T~IvPV~dG~vl~~a~~ri~i--GG~~lt~yL~~ 235 (691)
...+|+|||..-+.++-+-+|.+.....--.-- +|++|...-..
T Consensus 241 ~v~TIIDIGGQDsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~ 286 (404)
T TIGR03286 241 GPATVIDIGGMDNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKR 286 (404)
T ss_pred CCcEEEEeCCCceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHH
Confidence 467999999999999888788764322222222 46777665443
No 94
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=35.63 E-value=45 Score=35.46 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=46.9
Q ss_pred hHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcC-CCCceeEEEeccCCccceeehhhhhcC
Q psy7893 558 ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENR-PFQSHFSVSLAENPELDAWSGARQFSL 632 (691)
Q Consensus 558 l~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~-p~~~~i~V~~~~dp~~~aW~Gasilas 632 (691)
|...|.+.+..++ .+.|+|.||.+..+-|.++|++.+.... |...++.|..+.-...++-+||+.++-
T Consensus 233 la~~l~n~~~~ld-------P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 233 LAICLGNILTIVD-------PHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred HHHHHHHHHHHcC-------CCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 6667777776665 4668888887877888899999887643 322345666666555556668887653
No 95
>KOG0102|consensus
Probab=32.66 E-value=1.2e+02 Score=35.20 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=66.8
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhcCCCeEeechhhHHhhhhccCCCCCCccccccccccccCCCCCceEEEEEeCCce
Q psy7893 124 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203 (691)
Q Consensus 124 pvLltEp~~~~~~~re~l~EilFE~f~vp~v~~~~~alla~ya~~~~~~~G~~~~~~~~~~~~~~~~~~sgLVVDiG~~~ 203 (691)
..++|.|.+.....|+..- -+-.-.|-..+-+++.+.+++.+. |. +.....+-.|-|+|.++
T Consensus 162 ~avvtvpAyfndsqRqaTk-dag~iagl~vlrvineptaaalay------gl-----------d~k~~g~iaV~dLgggt 223 (640)
T KOG0102|consen 162 NAVITVPAYFNDSQRQATK-DAGQIAGLNVLRVINEPTAAALAY------GL-----------DKKEDGVIAVFDLGGGT 223 (640)
T ss_pred heeeccHHHHhHHHHHHhH-hhhhhccceeeccCCccchhHHhh------cc-----------cccCCCceEEEEcCCce
Confidence 5677887777666665544 444455666677788888887777 54 11224678899999998
Q ss_pred EEEEEe--ecCee-cccCeEEeeccHHHHHHHHHHHHhh
Q psy7893 204 THVIPV--INGCI-DASKAKRIDLGGFSVIHHLHKLLQL 239 (691)
Q Consensus 204 T~IvPV--~dG~v-l~~a~~ri~iGG~~lt~yL~~lL~~ 239 (691)
..|.-. .+|.- +...-....+||.++++++..++-.
T Consensus 224 fdisilei~~gvfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 224 FDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred eeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHH
Confidence 776543 56654 2333445679999999999988753
No 96
>PRK13320 pantothenate kinase; Reviewed
Probab=32.44 E-value=5.9e+02 Score=26.46 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.2
Q ss_pred eEEEEcCCceEEEEEeCCC
Q psy7893 29 PIVFDNGAWCCRVGWASCE 47 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~ 47 (691)
-++||+|-.++|.|+..++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 5899999999999987643
No 97
>PRK09698 D-allose kinase; Provisional
Probab=32.41 E-value=56 Score=34.65 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=45.3
Q ss_pred hHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccc-hHHHHHHHHhhcCC---CCceeEEEeccCCccceeehhhhhcC
Q psy7893 558 ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPG-FVERLNKDLLENRP---FQSHFSVSLAENPELDAWSGARQFSL 632 (691)
Q Consensus 558 l~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~G-f~eRL~~EL~~l~p---~~~~i~V~~~~dp~~~aW~Gasilas 632 (691)
|...+.+.+.-++ ...|+|.||.+..+. |.++|...++..+. ....++|..+.....++-+||+.++-
T Consensus 224 la~~l~~li~~ld-------P~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 224 LARAIATSINLFD-------PDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred HHHHHHHHHHHhC-------CCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 5666666665555 356888888777654 57889888887653 13346677776666666678886654
No 98
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=30.28 E-value=3.8e+02 Score=29.63 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhCCCCccccccccccCCCCCcEEEecceeeeecccccCCCC----CCCcccChHHHHHHHhccCCHHHH
Q psy7893 499 ERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSM----LGSIQAGISETLNFVLNSYPQHIA 574 (691)
Q Consensus 499 ~~l~~~~~~l~~~dp~~~~~~~~~~~~~~~~~~i~l~~Er~~~pE~LF~Ps~----ig~~~~Gl~e~i~~si~~~~~d~r 574 (691)
+-+..++.......-..++..+--.-.+|+|..++. ...|..+=.|.+ +-.+-..|.++|.. ...+++.-
T Consensus 90 ~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna----~~pPva~dGp~lsIRKf~k~~ltl~dli~~--gt~~~~~a 163 (355)
T COG4962 90 ALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNA----NSPPVAIDGPTLSIRKFPKIKLTLLDLIIF--GTMIRRAA 163 (355)
T ss_pred HHHHHHHHHHHHhCCccccCCceeeeeCCCCceEEe----ecCccccCCCcccccccccccccHHHHHHc--CCcCHHHH
Confidence 344455555555555555544444456778877765 356666644432 33344455555553 22333333
Q ss_pred HHh------hcCEEEeccCCCccchHHHHHHHHhhcCCCCc
Q psy7893 575 QSL------ANNIFVTGSLCQLPGFVERLNKDLLENRPFQS 609 (691)
Q Consensus 575 ~~L------~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~ 609 (691)
+.| ..||+++||++ -.+.=|-+.|....|+..
T Consensus 164 ~~L~~av~~r~NILisGGTG---SGKTTlLNal~~~i~~~e 201 (355)
T COG4962 164 KFLRRAVGIRCNILISGGTG---SGKTTLLNALSGFIDSDE 201 (355)
T ss_pred HHHHHHHhhceeEEEeCCCC---CCHHHHHHHHHhcCCCcc
Confidence 222 25999999998 456777789999888754
No 99
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=29.96 E-value=37 Score=36.72 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=30.6
Q ss_pred hcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeehhhhhc
Q psy7893 578 ANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 631 (691)
Q Consensus 578 ~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~Gasila 631 (691)
+.+|+||||++.+ |+.-|+...|. ..|...+||+++--+|--.++
T Consensus 274 ~~~Iil~GGGa~l------l~~~l~~~f~~---~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 274 IQNIVLVGGGAFL------FKKAVKAAFPK---HRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred ccEEEEeCCcHHH------HHHHHHHHCCC---CeeEecCCcHHHHHHHHHHhh
Confidence 6789999999973 22334444453 456677899988877765544
No 100
>PRK09557 fructokinase; Reviewed
Probab=29.42 E-value=68 Score=34.08 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=44.8
Q ss_pred hHHHHHHHhccCCHHHHHHhhcCEEEeccCCCccchHHHHHHHHhhcCCC-CceeEEEeccCCccceeehhhhhc
Q psy7893 558 ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPF-QSHFSVSLAENPELDAWSGARQFS 631 (691)
Q Consensus 558 l~e~i~~si~~~~~d~r~~L~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~-~~~i~V~~~~dp~~~aW~Gasila 631 (691)
|...+.+.+..++ .+.|+|.||.+..+-|-+.|++.++..... ..++.|..+.-...+.-+||+.+.
T Consensus 232 La~~l~~l~~~ld-------P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 232 LAKSLAHVINILD-------PDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHhC-------CCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 6667777666555 456888888888888888888888875432 235566665544455566776543
No 101
>PRK13326 pantothenate kinase; Reviewed
Probab=27.52 E-value=7.5e+02 Score=26.08 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=16.7
Q ss_pred eEEEEcCCceEEEEEeCCC
Q psy7893 29 PIVFDNGAWCCRVGWASCE 47 (691)
Q Consensus 29 ~vVID~GS~~~KaG~age~ 47 (691)
-++||+|-.++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 5899999999999987664
No 102
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=24.85 E-value=32 Score=37.22 Aligned_cols=42 Identities=17% Similarity=0.449 Sum_probs=25.0
Q ss_pred hcCEEEeccCCCccchHHHHHHHHhhcCCCCceeEEEeccCCccceeeh
Q psy7893 578 ANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSG 626 (691)
Q Consensus 578 ~~nI~LtGG~s~~~Gf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~G 626 (691)
+.+|+|+||++.+ |.+.|++.. |. ..-+++..++|+++--+|
T Consensus 273 ~~~I~~vGGGA~l--l~~~Ik~~~----~~-~~~~i~i~~~pqfAnv~G 314 (318)
T PF06406_consen 273 IDRIFFVGGGAIL--LKDAIKEAF----PV-PNERIVIVDDPQFANVRG 314 (318)
T ss_dssp -SEEEEESTTHHH--HHHHHHHHH----T---GGGEE--SSGGGHHHHH
T ss_pred CCeEEEECCcHHH--HHHHHHHhh----CC-CCCcEEECCCchhhHHHH
Confidence 4679999999955 444554442 21 122578888999886665
Done!