RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7893
(691 letters)
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 127 bits (322), Expect = 2e-32
Identities = 60/274 (21%), Positives = 121/274 (44%), Gaps = 37/274 (13%)
Query: 25 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER---GKKDGETQVGNDISNIE 81
D + +V DNG+ + G+A + P +F +++ +PR + G ++ VG++ +
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 82 AVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTEGNVNHPIVLTEPFLNPNYSRSL 140
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 63 GI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREK 118
Query: 141 MSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCG 200
M++++FE + VP++ I ++ S + + G +G+++ G
Sbjct: 119 MTQIMFETFNVPAMYVAIQAVLS------------LYASGR----------TTGIVLDSG 156
Query: 201 YQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 260
TH +P+ G R+DL G + +L K+L + S + + ++
Sbjct: 157 DGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKL 216
Query: 261 GFVATDYREHLRKWLD-------AEFYDSNVVKV 287
+VA D+ + E D V+ +
Sbjct: 217 CYVALDFENEMATAASSSSLEKSYELPDGQVITI 250
Score = 79.4 bits (196), Expect = 5e-16
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 516 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 575
+S + E+ + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 291
Query: 576 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 633
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 634 ENFHDFAVTQSDYQEKG 650
F +T+ +Y E G
Sbjct: 350 STFQQMWITKQEYDEAG 366
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 124 bits (312), Expect = 8e-31
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 40/273 (14%)
Query: 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER-----GKKDGETQVGNDISNIEAV 83
+V DNG + G+A P IF L+ +P + + VG++ S + ++
Sbjct: 8 VVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSM 67
Query: 84 RFQLKTQFDKNVVTHYDIQEQIFDYAFSH--LSINTEGNVNHPIVLTEPFLNPNYSRSLM 141
++ + +V ++D + ++DY F L+I+T N I+LTEP +NP +R +
Sbjct: 68 -LEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTR---NCKILLTEPPMNPTKNREKI 123
Query: 142 SELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGY 201
E++FE YQ V I ++ + + + G +GV++ G
Sbjct: 124 VEVMFETYQFSGVYVAIQAVLT------------LYAQGL----------LTGVVVDSGD 161
Query: 202 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYG 261
TH+ PV G +R+D+ G + +L KLL L+ + +S +
Sbjct: 162 GVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLC 221
Query: 262 FVATDYREHLRKWLDAEFY-------DSNVVKV 287
+V + + + L+ D ++KV
Sbjct: 222 YVGYNIEQEQKLALETTVLVESYTLPDGRIIKV 254
Score = 74.0 bits (182), Expect = 3e-14
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 530 NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 589
+ +G ER PE LFQP ++ G++E L + + +I ++G
Sbjct: 250 RIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTM 309
Query: 590 LPGFVERLNKDL---------LENRPFQSHFSVSLAENPE--LDAWSGARQF-SLSENFH 637
PG RL ++L + S F + + + P + G + ++
Sbjct: 310 YPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKD 369
Query: 638 DFAVTQSDYQEKG 650
+F +T+ +YQEKG
Sbjct: 370 NFWMTRQEYQEKG 382
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 120 bits (302), Expect = 3e-29
Identities = 61/288 (21%), Positives = 108/288 (37%), Gaps = 52/288 (18%)
Query: 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKP-----------RKERGKKDGETQVGNDI 77
V D G ++G+A +P I + IA R +G D + +G++
Sbjct: 7 ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDE- 65
Query: 78 SNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTEGNVNHPIVLTEPFLNPNY 136
IE + K +V +D+ E+ + L E +H +LTEP LN
Sbjct: 66 -AIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE---DHYFLLTEPPLNTPE 121
Query: 137 SRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVI 196
+R +E++FE + VP + + ++ + + + + G +G +
Sbjct: 122 NREYTAEIMFESFNVPGLYIAVQAVLA------------LAASWT--SRQVGERTLTGTV 167
Query: 197 ISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEEL 256
I G THVIPV G + S K I + G + + + +LL+ + I P +S E
Sbjct: 168 IDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREV----GIPPEQSLET 223
Query: 257 LWD----YGFVATDYREHLRKWL-------------DAEFYDSNVVKV 287
Y +V D + K+ +A + V
Sbjct: 224 AKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDV 271
Score = 74.7 bits (184), Expect = 2e-14
Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 20/166 (12%)
Query: 505 EEILRQHDPEFTSLNQEQEL---SPKEANQLHIGVERMCGPECLFQPSMLGS-IQAGISE 560
+ ++D + + ++ K+ + +G ER GPE F P ISE
Sbjct: 239 VKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISE 298
Query: 561 TLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE 620
++ V+ + P + + L NI ++G F RL +DL + S L+
Sbjct: 299 VVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRL 358
Query: 621 LD----------------AWSGARQFSLSENFHDFAVTQSDYQEKG 650
W G + + F+ T+ DY+E G
Sbjct: 359 KPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIG 404
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 116 bits (293), Expect = 3e-28
Identities = 53/276 (19%), Positives = 105/276 (38%), Gaps = 46/276 (16%)
Query: 25 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE--------------------- 63
++PI+ DNG ++G+A + P+ +F +IA
Sbjct: 3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGH 62
Query: 64 ----RGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTE 118
R +D + +GND + + L + ++D E+ + + L E
Sbjct: 63 LSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122
Query: 119 GNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIIS 178
+H +LTEP LNP +R +E++FE + + + ++ + + +
Sbjct: 123 ---DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLA------------LAA 167
Query: 179 CGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQ 238
+G ++ G TH+IPV G + S K + L G V + + LL+
Sbjct: 168 SWT--SSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLR 225
Query: 239 LKYPSHINSITPSRSEELLWDYGFVATDYREHLRKW 274
+ + T R +E + +V D + ++
Sbjct: 226 DRNEPDSSLKTAERIKE---ECCYVCPDIVKEFSRF 258
Score = 74.5 bits (183), Expect = 3e-14
Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 24/173 (13%)
Query: 493 DSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLG 552
D +E R + ++ E + + + +G ER PE F P +
Sbjct: 250 DIVKEFSRFDREPDRYLKYASESIT---------GHSTTIDVGFERFLAPEIFFNPEIAS 300
Query: 553 S-IQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHF 611
S + E ++ V+ S P + + L NI ++G F RL +DL + H
Sbjct: 301 SDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHR 360
Query: 612 SVSLAENPELD--------------AWSGARQFSLSENFHDFAVTQSDYQEKG 650
S L+ W G + + F + T++DY+E G
Sbjct: 361 SEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYG 413
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 115 bits (288), Expect = 3e-27
Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 28/226 (12%)
Query: 25 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVR 84
D +V D G++ +G++ + P I ++ K + G K I
Sbjct: 21 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKK--IFSEQSIGIPRKD- 77
Query: 85 FQLKTQFDKNVVTHYDIQEQIFDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 143
++LK + +V +D ++ + +A L +N+ P +LTEP N +R E
Sbjct: 78 YELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSG--IPALLTEPVWNSTENRKKSLE 135
Query: 144 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISCGYQC 203
+L E Q + S G + +++ G+
Sbjct: 136 VLLEGMQFEACYLAPTSTCVSFAAG----------------------RPNCLVVDIGHDT 173
Query: 204 THVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSIT 249
V P+++G + +R + G + H + K L+ K + +I
Sbjct: 174 CSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIK 219
Score = 74.3 bits (182), Expect = 4e-14
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 530 NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 589
N E P +P + G+++ + + S + +LA+N+ +TG
Sbjct: 366 NSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSS 425
Query: 590 LPGFVERLNKDLLENRPFQSHFSVSLAENPELD-----AWSGARQFSLSENFHDFAVTQS 644
+PG +RL +L + P + +W G + FH V +
Sbjct: 426 IPGLSDRLMTELNKILP---SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKK 482
Query: 645 DYQEKG 650
+Y+E G
Sbjct: 483 EYEEVG 488
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 2e-11
Identities = 72/538 (13%), Positives = 156/538 (28%), Gaps = 131/538 (24%)
Query: 4 KVLKDTKILPDP---YYEYLDELRDSSLPIV--FDNGAWCCRVGW------ASCEKPNLI 52
+ + + D L +V F + +P+++
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 53 FKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKT-----QFDKNVVTH--------- 98
+ I + ++R D + ++S ++ +L+ + KNV+
Sbjct: 109 TRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 99 --------YDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQ 150
Y +Q + D+ L++ N N P +++ L YQ
Sbjct: 166 VALDVCLSYKVQCK-MDFKIFWLNL---KNCNSP-------------ETVLEMLQKLLYQ 208
Query: 151 V-PSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQY------NGWEGQSGVIISCGYQC 203
+ P+ D + + Q+ + + Y+ N + + C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSC 266
Query: 204 -----THVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQL--KY--------PSHINSI 248
T V + + A+ I L S+ ++ L KY P + +
Sbjct: 267 KILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 249 TPSRSEELLWDYGFVATDYREHLRKWLDAEFY-DSNVVKVQLPYAVPVPNLTTEQQKDRR 307
P +A R+ L W + + N K+ + L + +
Sbjct: 326 NP-----RR--LSIIAESIRDGLATW---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 308 KELA---------KKLVEM---NAKKREERLVDDERHLNELLELREIVELTPSDHSHARE 355
L+ L+ + + K + +V ++ H L+E ++ E T S S E
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLE 434
Query: 356 AFKSMGINNIQDLNKSI---NQLQQKIEKTKAKI----------IAY-----NNGEDLTE 397
+ N L++SI + + + I + + E +T
Sbjct: 435 LKVK--LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 398 EPK---------AKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAK 446
K+ + + L + K + YI D ++ +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 52.5 bits (125), Expect = 4e-07
Identities = 74/486 (15%), Positives = 140/486 (28%), Gaps = 141/486 (29%)
Query: 91 FDKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFEC-- 148
F+ V ++D ++ + D S LS E ++H ++ + LF
Sbjct: 25 FEDAFVDNFDCKD-VQDMPKSILS-KEE--IDH--IIMSK------DAVSGTLRLFWTLL 72
Query: 149 -YQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQVYQYNGWEGQSGVIISC---GYQCT 204
Q V ++ + Y + + + + + + I Y
Sbjct: 73 SKQEEMVQKFVEEVLRINY-KF-------LMSPIK-TEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 205 HVIPVINGCIDASKAKRIDLGGFSVIHHLHK-LLQLKYPSHINSITPSRSEELLWDYGF- 262
V N R+ L + LL+L R + + G
Sbjct: 124 QVFAKYN-------VSRLQP-----YLKLRQALLEL------------RPAKNVLIDGVL 159
Query: 263 ----------VATDYREHLRK-----WLDAEFYDSN---VVKVQLPYAVPVPNLTTEQQK 304
V Y+ + WL+ + +S + +Q PN T +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT--SRS 217
Query: 305 DRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINN 364
D + ++ + A+ R RL+ + + N LL L + + AF
Sbjct: 218 DHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNV-----QNAKAW-NAFN------ 263
Query: 365 IQDLNKSINQLQQKIEKT--KAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIE 422
L KI T ++ + + T S + E ++ +L
Sbjct: 264 ----------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-- 311
Query: 423 TKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVY 482
R QDL + R+ +I+E R D WD +
Sbjct: 312 ---------------DCRPQDLPREVLTTNPRRLSIIAESIR------DGLAT---WDNW 347
Query: 483 KVINKDAGDT---------DSEEEQERLIELEEILRQHD--PE--FTSL--NQEQELSPK 527
K +N D T + E ++ L + P + + + +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 528 EANQLH 533
N+LH
Sbjct: 407 VVNKLH 412
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 102/589 (17%), Positives = 167/589 (28%), Gaps = 205/589 (34%)
Query: 227 FSVIHHLH-KLLQLK------YPSHINSIT----PSRSEELLWDY-GFVA--------TD 266
V QL+ P P+ EL+ + G+V+
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 267 YREHLRKWLDAEF---Y----DSNVVKVQLPYAVPVPNLTTEQQKDRRKELAK------- 312
+ + L L EF Y D + + +L T K KEL K
Sbjct: 80 FDQVLNLCLT-EFENCYLEGNDIHALAAKLL-----QENDTTLVK--TKELIKNYITARI 131
Query: 313 ------------KLVEMNAKKREERLV-------DDERHLNELLELREIVELTPSDHSHA 353
L + +LV + + + EL +L +
Sbjct: 132 MAKRPFDKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT----------- 179
Query: 354 REAFKSMGINNIQDL-NKSINQLQQKIEKTKAKIIAYNNGEDLT---EEPKAK------L 403
+ + + DL S L + I T + G ++ E P L
Sbjct: 180 ---YHVL----VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 404 SKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELA 463
S I+ P LI + Y++ K +L A L++ +A
Sbjct: 233 SIPISCP---------LIGVIQLAHYVVTAKLL-GFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 464 RKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEI-LRQHD--PEFTSLNQ 520
D W+ + V + A + L I +R ++ P +
Sbjct: 283 --------IAETD-SWESFFVSVRKA-----------ITVLFFIGVRCYEAYPNTS---- 318
Query: 521 EQELSPKEANQLHIGVERMCGPECLFQPS-MLG-------SIQAGISETLNFVLNSY-P- 570
L P L +E G PS ML +Q +++T NS+ P
Sbjct: 319 ---LPPS---ILEDSLENNEG-----VPSPMLSISNLTQEQVQDYVNKT-----NSHLPA 362
Query: 571 -QHIAQSLAN---NIFVTGSLCQLPGFVERLNK-----DLLENR---------------- 605
+ + SL N N+ V+G L G L K L ++R
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 606 ---PFQSHFSVSLAENPELDAWSGARQFSLSE----NFHDFAVTQSDYQEKGGEF----- 653
PF SH V ++ D F+ + + F SD + G
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF--DGSDLRVLSGSISERIV 480
Query: 654 -----FRVH-PCSNKFEPY------PLVIS-LDEPIITNAEGDGEDTVI 689
V + +F+ P S L N +G G ++
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 56.2 bits (135), Expect = 3e-08
Identities = 71/424 (16%), Positives = 134/424 (31%), Gaps = 121/424 (28%)
Query: 18 EYLDELRD---SSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK------KD 68
+Y +ELRD + +V G + LI L A+ +G ++
Sbjct: 168 DYFEELRDLYQTYHVLV---GDLIKFSA-ETLS--ELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 69 GETQVGNDISNIEAVRF---QLKTQFDKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHP- 124
D + + Q HY + ++ + L +G H
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGV-IQL-----AHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 125 -IVLT---------EPFLNPNYSRSLMSELLF----ECYQV-PSVCYGIDSLFSYQYNGW 169
+V E F + +++ +LF CY+ P+ L N
Sbjct: 276 GLVTAVAIAETDSWESFFV-SVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENN- 331
Query: 170 EGQSGVIISC-GY-------QVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKR 221
EG ++S V + N + I ++NG AK
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV---------EISLVNG------AKN 376
Query: 222 I-------DLGGFSVIHHLHKLLQLKYPSHIN-SITPSRSEELLWDYGF--VATDYREHL 271
+ L G ++ L K K PS ++ S P +L + F VA+ + HL
Sbjct: 377 LVVSGPPQSLYGLNL--TLRK---AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 272 RKWLD--AEFYDSNVVKVQLPY-----AVPVPNLTTEQQKDRRK---ELAKKLVEMNAKK 321
L ++ + ++VK + + +PV + T D R +++++V+ +
Sbjct: 432 ---LVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERIVDCIIRL 486
Query: 322 R---EERLVDDERHLNELLELREIVELTPSDHS-------HAREAFKSMGINNIQ--DLN 369
E H I++ P S ++ G+ I L+
Sbjct: 487 PVKWETTTQFKATH---------ILDFGPGGASGLGVLTHRNKDG---TGVRVIVAGTLD 534
Query: 370 KSIN 373
+ +
Sbjct: 535 INPD 538
Score = 50.8 bits (121), Expect = 2e-06
Identities = 110/656 (16%), Positives = 184/656 (28%), Gaps = 250/656 (38%)
Query: 5 VLKD--TKILPDPYYEYLDELRDSSLPIVFDNGAWCCRVGWASCEKPNLI--FKNLIAKP 60
L++ KILP+P + + ++ L+ F ++
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTT--------------------PAELVGKFLGYVSS- 70
Query: 61 RKERGKKDGETQV--------------GNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIF 106
E K QV GNDI A+ +L + D +V ++ I
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVKTKEL---IK 124
Query: 107 DYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSV-CYGIDSLFSYQ 165
+Y + + PF + S LF + I F
Sbjct: 125 NYITARIMAK------------RPFDKKSNSA------LFRAVGEGNAQLVAI---F--- 160
Query: 166 YNGWEGQSGVIISC------GYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKA 219
G GQ G YQ Y ++ I S
Sbjct: 161 --G--GQ-GNTDDYFEELRDLYQTYH----------------------VLVGDLIKFSAE 193
Query: 220 KRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWL---- 275
L +L++ T +E++ + G ++ +WL
Sbjct: 194 ------------TLSELIR----------TTLDAEKV-FTQGL-------NILEWLENPS 223
Query: 276 ---DAEFYDSNVVKVQLP---------YAVP--VPNLTTEQQKDRRKEL---AKKLVE-- 316
D ++ S + + P Y V + T + + K ++ LV
Sbjct: 224 NTPDKDYLLS--IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 317 -MNAKKREERLVDDERHLNELL--------ELREIVELTPS---DHSHAREAFKS-MGIN 363
+ E R +L E L PS D E S M
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--L 339
Query: 364 NIQDLNKSINQLQQKIEKTKAKI-------IAYNNGEDLTEEPKAKLSKEIAV----PES 412
+I +L + Q+Q + KT + + I+ NG K V P+S
Sbjct: 340 SISNLTQE--QVQDYVNKTNSHLPAGKQVEISLVNG------AKN------LVVSGPPQS 385
Query: 413 EAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMR-L-ISE------LAR 464
L +K +A + Q R ++R+ R L ++ L
Sbjct: 386 LYGLNLTL---RKAKA-----PSGLDQSRIPFSERKLKF---SNRFLPVASPFHSHLLVP 434
Query: 465 -KEKRDDDFGMRDEDWD-------VYKVINKDAGD--TDSEEEQERLIELEEILRQHDPE 514
+ + D + ++ VY D D S ER+++ I+R
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDT--FDGSDLRVLSGSISERIVDC--IIRLP--- 487
Query: 515 FTSLNQEQELSPKEANQLHI---GVERMCGPECLFQPSMLGS----IQAGISETLN 563
+ E K HI G G L + G+ I AG TL+
Sbjct: 488 ---VKWETTTQFKA---THILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLD 534
Score = 31.6 bits (71), Expect = 1.2
Identities = 40/251 (15%), Positives = 72/251 (28%), Gaps = 79/251 (31%)
Query: 302 QQKDRRKEL------AKKLVEMNAKKREERLVDDERHLNELL--ELREIVELTPSDHS-- 351
Q++ +L A+ + A + H + + +IV P + +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWN-RA----------DNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 352 -------HAREAFKSMGINNIQDLNKSINQLQQKI-EKTKAKIIAYNNGE-DLTE--EPK 400
RE + +M I D ++ ++I E + + G T+ +P
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP- 1734
Query: 401 AKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKK----------NARKQRRQDLAKRRTA 450
A E A F+ K + I A LA +
Sbjct: 1735 ALTLMEKAA------FEDL-----KSKGLIPADATFAGHSLGEYAA-------LA----S 1772
Query: 451 AAQ------------ERMRLISELA-RKEKRDDDFGMRDED-WDVYKVINKDAGDTDSEE 496
A R + R E ++GM + V +++A E
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 497 EQERLIELEEI 507
+R L EI
Sbjct: 1833 VGKRTGWLVEI 1843
Score = 28.9 bits (64), Expect = 7.7
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 186 YNGWEGQSGVIISCGYQCTHV--IPVINGCIDASKAKRIDLGGFSVIHHLHKL 236
YN E Q + + G + + + ++ K ++ID+ L ++
Sbjct: 1846 YNV-ENQQ-YVAA-G----DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 57.5 bits (139), Expect = 1e-08
Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 37/234 (15%)
Query: 301 EQQKDRRKELAKKLVEMNAK-KREERLVDDERHLNELLELREIVELTPSDHSHAREAFKS 359
+ +++EL + L EM A+ + EE + + ++ +++++L
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ-QQMLDLE------------- 961
Query: 360 MGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESE-AEFKA 418
+++ + +LQ + KI + + E+ KL+KE + E ++
Sbjct: 962 ---EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018
Query: 419 WLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDED 478
L E ++K + KN + +L R + R L K K + +
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL---EKIKRKLEGE------- 1068
Query: 479 WDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQL 532
+ D + +E + + + EL+ L + + E + E + N
Sbjct: 1069 -------SSDLHEQIAELQAQ-IAELKAQLAKKEEELQAALARLEDETSQKNNA 1114
Score = 41.7 bits (98), Expect = 8e-04
Identities = 22/176 (12%), Positives = 68/176 (38%), Gaps = 26/176 (14%)
Query: 365 IQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAE-FKAWLIET 423
+Q ++ + + +++ +K +A++ E+ +L +E + + + + E
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKEL-------EQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 424 KKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYK 483
++ R + KK ++ ++ R + +L +E + +++ M D + +
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ-----MLDLEEQL-- 964
Query: 484 VINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERM 539
EEE+ +L+ D + + + + + N+L + +
Sbjct: 965 -----------EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.9 bits (95), Expect = 5e-04
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 37/112 (33%)
Query: 407 IAVPE---SEAE-FKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISEL 462
IA + E E + W R+++R+ L + A+ +
Sbjct: 74 IAQADRLTQEPESIRKW-----------------REEQRKRLQELDAASKVMEQEWREK- 115
Query: 463 ARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPE 514
A+K+ E+W + ++ + + R+ + + +Q D +
Sbjct: 116 AKKDL---------EEW--NQRQSEQV---EKNKINNRIAD-KAFYQQPDAD 152
Score = 35.1 bits (80), Expect = 0.043
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 20/83 (24%)
Query: 451 AAQERMRLISELARK--EKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEIL 508
A +R+ E RK E++ D + E E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDA------------------ASKVMEQEWREKA 116
Query: 509 RQHDPEFTSLNQEQELSPKEANQ 531
++ E+ EQ K N+
Sbjct: 117 KKDLEEWNQRQSEQVEKNKINNR 139
Score = 30.1 bits (67), Expect = 1.5
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 35/107 (32%)
Query: 303 QKDRRK---ELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKS 359
Q DR E +K E K+ +E D E RE A++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQEL---DAASKVMEQEWRE----------KAKK---- 118
Query: 360 MGINNIQDLNKSINQLQQKIEKTKAKIIAYNNG---EDLTEEPKAKL 403
++++ N+ + +++EK K NN + ++P A +
Sbjct: 119 ----DLEEWNQ---RQSEQVEKNKI-----NNRIADKAFYQQPDADI 153
Score = 29.0 bits (64), Expect = 3.7
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 27/83 (32%)
Query: 269 EHLRKW----------LDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMN 318
E +RKW LDA S V++ + E+ K +E ++ E
Sbjct: 85 ESIRKWREEQRKRLQELDAA---SKVMEQEW----------REKAKKDLEEWNQRQSEQV 131
Query: 319 AKKREERLVDDERHLNELLELRE 341
K + + D+ + +
Sbjct: 132 EKNKINNRIADK----AFYQQPD 150
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 35.5 bits (81), Expect = 0.044
Identities = 18/163 (11%), Positives = 56/163 (34%), Gaps = 10/163 (6%)
Query: 317 MNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGIN------NIQDLNK 370
+ + ++L++ E+ L ++ D A ++ L
Sbjct: 1 LGSNTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKL 60
Query: 371 SINQLQQKIEKTKAKIIAYNNGEDLTEEPK--AKLSKEIAVPESEAEFKAWLIETKKKRA 428
+++ +Q ++ T AKI + + + L+ E ++ E + +
Sbjct: 61 QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEED--IAKERSNQANREIENLQN 118
Query: 429 YIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDD 471
I K ++ ++++ + A + + +E+ ++
Sbjct: 119 EIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQI 161
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 35.7 bits (82), Expect = 0.068
Identities = 39/240 (16%), Positives = 88/240 (36%), Gaps = 22/240 (9%)
Query: 295 VPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAR 354
P+ T+ + + +K+ K E R + ++ +E L+ + ++ SD A
Sbjct: 763 FPDPTSIESEKEKKDFVKLFGEYL------RAENILQNYDEFATLKALQQIDLSDPV-AV 815
Query: 355 EAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNN-GEDLTEEPKAKLSKEIAVPESE 413
E FK+ + + + K + AYN+ + E +A+ ++ +
Sbjct: 816 EKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDD 875
Query: 414 AEFKAWLIETKK-KRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDF 472
F+ L+++++ YI+ ++ + + +E RLI
Sbjct: 876 VVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMI----EEVKRLI---------RSSL 922
Query: 473 GMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQL 532
G R ++ V I + D ++ R+ E +L +E+ L+ A +
Sbjct: 923 GNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRY 982
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 34.5 bits (78), Expect = 0.12
Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 35/254 (13%)
Query: 304 KDRRKELAKKLVEMNAKKREE-RLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGI 362
R+ +L + + + V +L +E + S + +R + GI
Sbjct: 377 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGI 436
Query: 363 NNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLT-EEPKAKLSKEIAVPESEAEFKAWLI 421
+ L K + +L Q+ + + + + E+ T + +AK + S +K
Sbjct: 437 QTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRA 496
Query: 422 ETKKKRAYIIDKKNARKQRRQ---------------------DLAKRRTAAAQERMRLIS 460
E R + A Q ++ + A + +++
Sbjct: 497 EGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVN 556
Query: 461 EL-----------ARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILR 509
L +E ++D + D K + A D EE + EL+ +
Sbjct: 557 VLKSLLSNLDEVKKEREGLENDLKSVNFD-MTSKFLTALAQDGVINEEALSVTELDRVYG 615
Query: 510 QHDPEFTSLNQEQE 523
+ ++QE
Sbjct: 616 GLTTKVQESLKKQE 629
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 33.3 bits (75), Expect = 0.16
Identities = 10/65 (15%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 420 LIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISE------LARKEKRDDDFG 473
+ E K++R + + ++R+ A +R + + R + ++E DD++
Sbjct: 124 IQECKRRRFF--ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWD 181
Query: 474 MRDED 478
+ +++
Sbjct: 182 LPEDE 186
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 33.4 bits (75), Expect = 0.30
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 301 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 360
EQ++ +E K+L E R + L + ER L +L+E +L +E F+
Sbjct: 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL--KLQEQEQL-------LKEGFQ-- 566
Query: 361 GINNIQDLNKSINQLQQKIEKTKAKIIA 388
+ + I LQ K+ + KA I+
Sbjct: 567 --KESRIMKNEIQDLQTKMRRRKACTIS 592
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 31.8 bits (72), Expect = 0.69
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 300 TEQQKDRRKELAKKLVEMNAKKR--EERLVDDERHLNELLELREIVELTPSDHSHAREAF 357
+ +D ++ K E+ + + DE +++ + + EA
Sbjct: 40 LQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEAS 99
Query: 358 KSMGINNIQDLNKSINQLQQKIEKTKAKI 386
++I+ L + N QKI K K+
Sbjct: 100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKV 128
>1nqk_A Alkanesulfonate monooxygenase; structural genomics, beta barrel,
PSI, protein structure INI midwest center for structural
genomics, MCSG; 2.20A {Escherichia coli} SCOP: c.1.16.4
PDB: 1m41_A
Length = 381
Score = 32.0 bits (73), Expect = 0.71
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 450 AAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILR 509
+E++ + A R FG+R VI +T+ +E + E ++
Sbjct: 202 ELVKEKIEQVRAKAAAHGRKIRFGIR------LHVI---VRETN-DEAWQA---AERLIS 248
Query: 510 QHDPE 514
D E
Sbjct: 249 HLDDE 253
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 32.1 bits (72), Expect = 0.73
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 10/169 (5%)
Query: 301 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 360
++ E+ E AK +RL + R E ++ + E + SM
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 361 GINNIQDLNKSINQL--QQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKA 418
+ + + +IE + + A + L E +A+L + V E E +
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYAR 774
Query: 419 WLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEK 467
+E + + A++ + K + I +LA
Sbjct: 775 AQLELEVSK--------AQQLANVEAKKFKEMTEALGPGTIRDLAVAGP 815
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.3
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 90 QFDKNVVTHYDIQEQIFDYAFSHLSINTE--GNVNHPIVLTEPFLNPNYSRSLMSELLFE 147
QF+ + ++ + G + ++P+Y ++E +
Sbjct: 1421 QFEYVLYPSKTLKTDGVRAVSI----TSFGFGQKGGQAI----VVHPDYLYGAITEDRYN 1472
Query: 148 CYQ 150
Y
Sbjct: 1473 EYV 1475
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 30.4 bits (68), Expect = 1.6
Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 23/234 (9%)
Query: 301 EQQKDRRKELAKKLVEM--NAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFK 358
+Q +D L KKL K E L D + L + E + +
Sbjct: 37 KQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLN------- 89
Query: 359 SMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKA 418
IQ + +++ Q+++ K+ D +E + E + E +
Sbjct: 90 ----RRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQE 145
Query: 419 WLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDED 478
++ K A D+K R+ + + A+ER EL+ + + + ++
Sbjct: 146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA----ELSEGKCAELEEEIKTVT 201
Query: 479 WDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQL 532
++ + + +E+ ++ + EE ++ + E + + +L
Sbjct: 202 NNLKSLEAQ------AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKL 249
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 2.5
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 25/129 (19%)
Query: 394 DLTEEPKAKLS-KEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAA 452
DL +E +K+ + P + E + L E +K +K A + Q+ K AA
Sbjct: 376 DLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRK------EKDAA--VQSQEFEK----AA 423
Query: 453 QER---MRLISELAR-----KEKRDDDFGMRDEDWDVYKVINKDAG---DTDSEEEQERL 501
R RL ++ KEK+ + D D+ V++ G ++ E ++L
Sbjct: 424 SLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD-DIAMVVSSWTGVPVSKIAQTETDKL 482
Query: 502 IELEEILRQ 510
+ +E IL
Sbjct: 483 LNMENILHS 491
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 2.8
Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 424 KKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYK 483
++ ++ II K R + A + +A++E + ++ E V +
Sbjct: 863 REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK----LKIEARSVER 918
Query: 484 VI-NKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQE 523
+ + Q ++ E + + + +L
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 29.8 bits (66), Expect = 3.0
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 3/191 (1%)
Query: 317 MNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQ 376
++ K + + ++ E E + + + + +
Sbjct: 111 IDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNA 170
Query: 377 QKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNA 436
+ K K + E L+++IA E E + KR + K
Sbjct: 171 ELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKR---LQKSAD 227
Query: 437 RKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEE 496
+ R L R+ + + + + + F + + Y+V + E
Sbjct: 228 LYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEARDYEVSDSAPHLEGLAE 287
Query: 497 EQERLIELEEI 507
QE + +
Sbjct: 288 FQENVRKTNNF 298
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI
transcription regulator, PSI-2; 1.85A {Listeria
monocytogenes str}
Length = 142
Score = 28.4 bits (64), Expect = 4.3
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 338 ELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTE 397
L + + L + +L I+ +Q+ +++ KI Y+ +
Sbjct: 64 ALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQ 122
Query: 398 EPKAKLSKE 406
E + E
Sbjct: 123 EELKDFNVE 131
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 29.5 bits (67), Expect = 4.7
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 296 PNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAR- 354
P L + +++ + + E+ + ++ L + +LR + + S
Sbjct: 52 PLLENKDLEEKLQAFLDYVKEIPNLPEARKRYRIQKSLEMIEKLRSWFLIDYLECSGEEV 111
Query: 355 -----------------EAFKSMGINNIQDL 368
+ K +GI ++DL
Sbjct: 112 DLSTDIQYAKGVGPNRKKKLKKLGIETLRDL 142
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 29.0 bits (66), Expect = 5.5
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 365 IQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETK 424
Q + ++IN+L ++ K + E L A ++ A+ I K
Sbjct: 212 QQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS--------DAYRITDK 263
Query: 425 KKR 427
++R
Sbjct: 264 QER 266
>3gpv_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.90A {Bacillus thuringiensis serovarkonkukian}
Length = 148
Score = 27.7 bits (62), Expect = 6.7
Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 336 LLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDL 395
+ ++++ ++ + + ++ + I ++ ++K + KI Y +
Sbjct: 76 IQKIKQFIDW-SMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134
Query: 396 TEEPK 400
Sbjct: 135 ANATT 139
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 28.4 bits (62), Expect = 6.8
Identities = 16/155 (10%), Positives = 56/155 (36%), Gaps = 8/155 (5%)
Query: 300 TEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKS 359
+++ ++ E K+ E + ERL + ++H E+R+ ++ + +
Sbjct: 94 AKEKLAQKMESNKENREAHFAAMLERLQEKDKHAE---EVRQRAIEENNNWIKMAKEKLA 150
Query: 360 MGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAW 419
+ + ++ K K K + ++ + + + I + + + K
Sbjct: 151 QKMESNKENRKYQEAELLKHLAEKREHE-----REVIQRAIEENNNWIKMAKEKLAQKME 205
Query: 420 LIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQE 454
+ ++ + + +++ + R+ +E
Sbjct: 206 SNKENREAHFAAMLERLQEKDKHAEEVRKNKELKE 240
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 29.0 bits (66), Expect = 7.1
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 18/87 (20%)
Query: 365 IQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETK 424
Q + ++IN+L ++ K + E L A +
Sbjct: 218 QQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARL----------------- 260
Query: 425 KKRAYIIDKKNARKQRRQDLAKRRTAA 451
AY I K R + + A
Sbjct: 261 -SDAYRITDKQERYAQVDVIKSETIAT 286
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.9 bits (65), Expect = 7.1
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 7/91 (7%)
Query: 365 IQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLI-ET 423
+LNK N + I + K E + ++ + + + +
Sbjct: 50 ADNLNKLKNLCSKTIGEKMKK------KEPVGDDESVPENVLSFDDLTADALANLKVSQI 103
Query: 424 KKKRAYIIDKKNARKQRRQDLAKRRTAAAQE 454
KK R I + R L R +E
Sbjct: 104 KKVRLLIDEAILKCDAERIKLEAERFENLRE 134
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 28.8 bits (65), Expect = 7.4
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 250 PSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKE 309
P ++ + + + K+L YD + Y L +
Sbjct: 94 PEPNDFWTDSFDIKLLQQADAVEKFLP---YDKSRFAYVGEYIEVAKALGFDNVNP--DR 148
Query: 310 LAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFK 358
+ L R + EL +RE +L + H A +AF+
Sbjct: 149 VLHYLHYQ-------RAYKTD---YELDCMREANKLAVAGHKAAEQAFR 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 7.6
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 496 EEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVE 537
E+Q L +L+ L+ + + S +P A + +E
Sbjct: 18 EKQA-LKKLQASLKLYADD--S-------APALA--IKATME 47
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A
{Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6
2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J
3j0e_G
Length = 185
Score = 27.9 bits (63), Expect = 7.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 293 VPVPNLTTEQQKDRRKELAKKLVEMNAKKREE 324
+ +P LT E RRK+L + ++ E
Sbjct: 101 INIPPLTEE----RRKDLVRA-----VRQYAE 123
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex
aeolicus} SCOP: d.67.3.1
Length = 184
Score = 27.9 bits (63), Expect = 8.2
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 20/59 (33%)
Query: 293 VPVPNLTTEQQKDRRKEL---AKKLVE-------------MNAKKREERLVDDERHLNE 335
V +P LT E RR+EL K+ E + E + +DE+
Sbjct: 102 VTLPPLTEE----RRRELVRLLHKITEEARVRVRNVRREAKEMIEELEGISEDEKKRAL 156
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio
parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Length = 185
Score = 27.9 bits (63), Expect = 8.3
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 293 VPVPNLTTEQQKDRRKELAKKLVEMNAKKREE 324
VP+P LT E RRK+L K + E
Sbjct: 100 VPLPPLTEE----RRKDLVKI-----VRGEAE 122
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta
sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1
PDB: 1t1m_C
Length = 185
Score = 27.9 bits (63), Expect = 8.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 293 VPVPNLTTEQQKDRRKELAKKLVEMNAKKREE 324
+ P+ TTE +R++ KK AK+ E
Sbjct: 100 LVFPSPTTE----QREKWVKK-----AKEIVE 122
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 28.3 bits (63), Expect = 8.7
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 503 ELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETL 562
EE+ R + E+ L +A + R+ +P + + + +L
Sbjct: 240 AAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYD---AIRPVL-VELTQELRRSL 295
Query: 563 NFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDL 601
F + + ++ G +L G L L
Sbjct: 296 EFFRIQLEEASPEV----GYLLGGGSKLRGLASLLTDTL 330
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli}
SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Length = 185
Score = 27.9 bits (63), Expect = 8.8
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 293 VPVPNLTTEQQKDRRKELAKKLVEMNAKKREE 324
VP+P LT E RRK+L K + E
Sbjct: 100 VPLPPLTEE----RRKDLTKI-----VRGEAE 122
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.65A
{Bacillus anthracis}
Length = 209
Score = 28.0 bits (63), Expect = 8.8
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 293 VPVPNLTTEQQKDRRKELAKKLVEMNAKKREE 324
+ P LT E RR++L K KK E
Sbjct: 124 IAFPALTEE----RRRDLVKV-----VKKYAE 146
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle,
protein synthesis, translation; 2.15A {Mycobacterium
tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Length = 185
Score = 27.9 bits (63), Expect = 8.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 9/32 (28%)
Query: 293 VPVPNLTTEQQKDRRKELAKKLVEMNAKKREE 324
V VP LT E RR+EL K+ AK + E
Sbjct: 100 VAVPQLTEE----RRRELVKQ-----AKHKGE 122
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.7 bits (64), Expect = 9.8
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 232 HLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPY 291
H + K +N +P + L + T + L++ + F + + K+
Sbjct: 1827 HFDRNFYQKMKVGVNPRSPGYFIDGLRALVKLVTAKYQDLQE--NQRFVNVGLEKLN--- 1881
Query: 292 AVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVEL 345
+ + + K L+ LV+ ++E L ++ EL +
Sbjct: 1882 ------ESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQELIGNCII 1929
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 28.2 bits (62), Expect = 10.0
Identities = 13/56 (23%), Positives = 17/56 (30%)
Query: 399 PKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQE 454
P AK+ KE A +EA K R K + K A +
Sbjct: 335 PAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.396
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,797,450
Number of extensions: 674374
Number of successful extensions: 2153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2075
Number of HSP's successfully gapped: 104
Length of query: 691
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 591
Effective length of database: 3,909,693
Effective search space: 2310628563
Effective search space used: 2310628563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)