RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7893
(691 letters)
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 105 bits (263), Expect = 4e-27
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 29 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER-----------GKKDGETQVGNDI 77
V D G ++G+A +P I + IA + G D + +G++
Sbjct: 5 ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDE- 63
Query: 78 SNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTEGNVNHPIVLTEPFLNPNY 136
IE + K +V +D+ E+ + L E +H +LTEP LN
Sbjct: 64 -AIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE---DHYFLLTEPPLNTPE 119
Query: 137 SRSLMSELLFECYQVPSVCYGIDSLFS 163
+R +E++FE + VP + + ++ +
Sbjct: 120 NREYTAEIMFESFNVPGLYIAVQAVLA 146
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 104 bits (259), Expect = 7e-27
Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 30 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER---GKKDGETQVGNDISNIEAVRFQ 86
+V DNG+ + G+A + P +F +++ +PR + G ++ VG++ + +
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI-LT 60
Query: 87 LKTQFDKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLF 146
LK + ++T++D E+I+ + F + HP +LTE LNP +R M++++F
Sbjct: 61 LKYPIEHGIITNWDDMEKIWHHTFYNE--LRVAPEEHPTLLTEAPLNPKANREKMTQIMF 118
Query: 147 ECYQVPSVCYGIDSLFS 163
E + VP++ I ++ S
Sbjct: 119 ETFNVPAMYVAIQAVLS 135
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 94.8 bits (235), Expect = 1e-22
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 8/188 (4%)
Query: 471 DFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEA- 529
D RD + K++ + + E+E + +++E L +F + S
Sbjct: 33 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 92
Query: 530 -------NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIF 582
+ IG ER PE LFQPS +G AGI ET + I + L N
Sbjct: 93 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNV 152
Query: 583 VTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVT 642
++G PG +R+ K++ P + + W G + F +T
Sbjct: 153 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIT 212
Query: 643 QSDYQEKG 650
+ +Y E G
Sbjct: 213 KQEYDEAG 220
Score = 57.4 bits (138), Expect = 7e-10
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 193 SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSR 252
+G+++ G TH +P+ G R+DL G + +L K+L + S + +
Sbjct: 3 TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREI 62
Query: 253 SEELLWDYGFVATDYREHLRKWLDA-------EFYDSNVVKV 287
++ +VA D+ + + E D V+ +
Sbjct: 63 VRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITI 104
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 65.5 bits (159), Expect = 8e-13
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 530 NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 589
+ +G ER PE LFQP ++ G++E L + + +I ++G
Sbjct: 97 RIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTM 156
Query: 590 LPGFVERLNKDL 601
PG RL ++L
Sbjct: 157 YPGLPSRLEREL 168
Score = 58.6 bits (141), Expect = 2e-10
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 194 GVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRS 253
GV++ G TH+ PV G +R+D+ G + +L KLL L+ + +S
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60
Query: 254 EELLWDYGFVATDYREHLRKW 274
+ +V + + +
Sbjct: 61 RMIKEKLCYVGYNIEQEQKLA 81
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 65.6 bits (159), Expect = 2e-12
Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 20/206 (9%)
Query: 474 MRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQEL---SPKEAN 530
+RD + + + + E +L + ++D + + ++ K+
Sbjct: 48 LRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEF 107
Query: 531 QLHIGVERMCGPECLFQPSML-GSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 589
+ +G ER GPE F P ISE ++ V+ + P + + L NI ++G
Sbjct: 108 SIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTM 167
Query: 590 LPGFVERLNKDLLEN----------------RPFQSHFSVSLAENPELDAWSGARQFSLS 633
F RL +DL +P V W G + +
Sbjct: 168 FRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 227
Query: 634 ENFHDFAVTQSDYQEKGGEFFRVHPC 659
F+ T+ DY+E G R +P
Sbjct: 228 PEFYQVCHTKKDYEEIGPSICRHNPV 253
Score = 61.3 bits (148), Expect = 5e-11
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 193 SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSR 252
+G +I G THVIPV G + S K I + G + + + +LL+ + +
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLET 63
Query: 253 SEELLWDYGFVATDYREHLRKW 274
++ + Y +V D + K+
Sbjct: 64 AKAVKERYSYVCPDLVKEFNKY 85
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 35.1 bits (80), Expect = 0.019
Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 2/168 (1%)
Query: 301 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 360
++ + + L E + + +L +L++ P A E ++
Sbjct: 122 DRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTY 181
Query: 361 GINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWL 420
+ + + + +I Q Q + + + +I + + L + E E K
Sbjct: 182 -LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 240
Query: 421 IETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKR 468
+ + + +N R Q ++ + QE+ +L+ E +KE R
Sbjct: 241 YQ-EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 33.3 bits (75), Expect = 0.11
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 338 ELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTE 397
++I + +AR+A + + + + + ++ ++ I N DL
Sbjct: 4 SSQQIAK-------NARKAGNILKTISNEGRSDILYKIHDALKANAHAIEE-ANKIDLAV 55
Query: 398 EPKAKLSK 405
+ L+
Sbjct: 56 AKETGLAD 63
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 30.6 bits (69), Expect = 0.28
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 364 NIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIET 423
N + + + IN++ +K+KA+ I Y + + E + V E + ++E
Sbjct: 10 NSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGK---DPMEVFEQALKNVMPVLEV 66
Query: 424 KKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRD 469
+ +R A Q ++ R + +R + + AR
Sbjct: 67 RARR-----VGGANYQVPVEVRPDRRVSLG--LRWLVQYARLRNEK 105
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
{Escherichia coli [TaxId: 562]}
Length = 61
Score = 27.3 bits (61), Expect = 1.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 420 LIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKE 466
L + K + II++ A K+R Q L + + A QER +++ A+ E
Sbjct: 4 LKKAKAEAQVIIEQ--ANKRRSQILDEAKAEAEQERTKIV-AQAQAE 47
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 28.6 bits (64), Expect = 1.1
Identities = 10/96 (10%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 311 AKKLVEMNAKKREERLVDDERHLNELLELREIVEL--------TPSDHSHAREAFKSMGI 362
A KL++ ++ ++R+ + +N + E+ V+L + +
Sbjct: 2 ANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSS------E 55
Query: 363 NNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEE 398
+ +++L + +++ + + + ++ E
Sbjct: 56 DLMKELYQRCERMRPTLFR---LASDTEDNDEALAE 88
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 29.6 bits (65), Expect = 1.3
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 338 ELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTE 397
EL E + REA+ + ++ NK+I ++ +K+++ + +I+ N + E
Sbjct: 2 ELLEKAK-------KVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRID--VE 52
Query: 398 EPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIID 432
+ + + KE V L K+ +I
Sbjct: 53 KARERGVKESLV--------DRLALNDKRIDEMIK 79
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
halodurans [TaxId: 86665]}
Length = 415
Score = 29.2 bits (65), Expect = 1.8
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 25/124 (20%)
Query: 469 DDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIE-LEEILRQHDPEFTSLNQEQELSPK 527
D ++ + D +E + + L + + + DP + +++ S
Sbjct: 171 DPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFP 230
Query: 528 EAN---------------------QLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVL 566
E + + IGV++ P +G + + +L
Sbjct: 231 EESNRGRIIRDCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASM---DGVEHLL 287
Query: 567 NSYP 570
YP
Sbjct: 288 REYP 291
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 27.7 bits (61), Expect = 1.9
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 336 LLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEK 381
L E++E+++ D A ++ K + + Q +++ I + + +
Sbjct: 62 LDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS 107
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 26.8 bits (59), Expect = 2.2
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 318 NAKKREERLVDDERHLNELL-ELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQ 376
N ++ R HL L +L+ +V L P H + + +I+ L S +
Sbjct: 6 NEMEKNRR-----AHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60
Query: 377 QKIEKTKAKI 386
+I++ + +
Sbjct: 61 HQIDQLQREQ 70
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.7 bits (63), Expect = 2.5
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 301 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELR 340
EQQ + ++L + N +++ N +++LR
Sbjct: 13 EQQAAELETCKEQLFQSNMERK--------ELHNTVMDLR 44
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein
Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 27.0 bits (60), Expect = 2.5
Identities = 10/72 (13%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 313 KLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSI 372
++ + ++++ + + E+ L E EL E ++L + + M N ++ + +
Sbjct: 20 RVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPP---QSRGMYSNRMRSYKQEM 76
Query: 373 NQLQQKIEKTKA 384
+L+ ++++
Sbjct: 77 GKLETDFKRSRI 88
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.8 bits (64), Expect = 2.5
Identities = 23/178 (12%), Positives = 55/178 (30%), Gaps = 30/178 (16%)
Query: 313 KLVEMNAKKREERLVD-----DERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQD 367
KL + + ++ L+ E E+L+ + + + E + ++
Sbjct: 161 KLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQK----SLDQ 216
Query: 368 LNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEA--------EFKAW 419
+ K I +++ ++ A + + ++ E +
Sbjct: 217 MKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDY 276
Query: 420 LIETKKK----------RAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEK 467
+ KK + A K+ ++ +R T R +L E A KE+
Sbjct: 277 FVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK---RRETEEKMRRAKLAKEKAEKER 331
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 27.1 bits (60), Expect = 3.1
Identities = 13/95 (13%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 442 QDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEE---- 497
Q L ++ A + ++ + ++ +K ++ +D +VYK +E
Sbjct: 11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL 70
Query: 498 QERLIELEEILRQHDPEFTSLNQEQELSPKEANQL 532
QE+L L+ + + + + ++ + +
Sbjct: 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 28.2 bits (62), Expect = 4.0
Identities = 23/248 (9%), Positives = 62/248 (25%), Gaps = 50/248 (20%)
Query: 308 KELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQD 367
+ + +V ++ + +N + + P+D + F++M I I
Sbjct: 150 ANMVQGIVNYLSENTGAK----NGKINVIPG-----FVGPADMREIKRLFEAMDIPYIMF 200
Query: 368 LNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIE----- 422
+ S + K EDL + + L+ + + L +
Sbjct: 201 PDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLG-SYASDLGAKTLEKKCKVP 259
Query: 423 -TKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFG-------- 473
+ + + + + A+ E R + + G
Sbjct: 260 FKTLRTPIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALLGD 319
Query: 474 ----------MRDEDWDVYKVINKDAGDTDSEEEQERLI----------------ELEEI 507
+ + V+ G +E L ++ +
Sbjct: 320 PDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQW 379
Query: 508 LRQHDPEF 515
++ +
Sbjct: 380 IKNEGVDL 387
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 248
Score = 27.8 bits (60), Expect = 4.3
Identities = 19/199 (9%), Positives = 44/199 (22%), Gaps = 6/199 (3%)
Query: 182 QVYQYNGWEGQSGVIISCGYQCTHVIPVI-NGCIDASKAKRIDLGGFSVIHHLHKLLQLK 240
V+ G G V+ G A + I L+ + L
Sbjct: 47 HVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLI 106
Query: 241 YPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTT 300
+ + ++ + + D + R + V
Sbjct: 107 SVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEIN 166
Query: 301 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 360
K+ + + + + + H + +
Sbjct: 167 TGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAV-----HPQRLSEVE 221
Query: 361 GINNIQDLNKSINQLQQKI 379
G+NN L++ Q +
Sbjct: 222 GVNNRLQLSRLERVYQSEQ 240
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase
{Lactobacillus leichmannii [TaxId: 28039]}
Length = 156
Score = 26.9 bits (59), Expect = 5.0
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 176 IISCGYQVYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHK 235
I + + Y E G+ + GY + V+ D K I+L + V ++ K
Sbjct: 75 IKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIK 134
Query: 236 LLQLK 240
+ QLK
Sbjct: 135 MSQLK 139
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 26.9 bits (59), Expect = 5.1
Identities = 13/113 (11%), Positives = 39/113 (34%), Gaps = 10/113 (8%)
Query: 362 INNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLI 421
+ N L+ + + +++ + + + +AK+ K ++ ++ ++
Sbjct: 15 FQQVAQKTGVSNTLENEFKGRASEL------QRMETDLQAKMKKLQSM-KAGSDRTKLEK 67
Query: 422 ETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGM 474
+ +R K + QD A+R + + I + D +
Sbjct: 68 DVMAQRQTFAQK---AQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDL 117
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 241
Score = 27.1 bits (60), Expect = 6.2
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 459 ISELARKEKRDDDFGMRDEDWDVYK--VINKDAGDTDSEEEQE------RLIELEEILRQ 510
+S L +E R D+ + E +Y + N + +E++E L +L+ IL +
Sbjct: 109 LSFLREREVRVDNGAIVTEGVKIYPYGMGNLTLNEPFVKEKKELELSLAYLAKLDGILEK 168
Query: 511 HDPEFTSLNQ--EQELSPKE 528
+ +L+Q +L+PK+
Sbjct: 169 YRGSMRALSQDKGDKLTPKD 188
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 27.0 bits (58), Expect = 6.7
Identities = 21/161 (13%), Positives = 59/161 (36%)
Query: 363 NNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIE 422
I+ + K I +L +K +K + + + + + + E E E A
Sbjct: 22 EPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKS 81
Query: 423 TKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVY 482
+ + N ++ K+ +E+ +L S+ A+ K+ + +
Sbjct: 82 EQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQ 141
Query: 483 KVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQE 523
+ + S+ ++ +L+E+ ++ + +E++
Sbjct: 142 NDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQ 182
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 26.0 bits (57), Expect = 8.8
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 365 IQDLNKSINQLQQ-------KIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEF- 416
+ ++ +N Q ++E +A I E + + K E VP F
Sbjct: 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFI 62
Query: 417 KAWLIETKKKRAYIIDKKNARKQRRQ--DLAKRRTAAAQERMRLISELARK 465
KA L +T + + +K + K + + ++ + E R
Sbjct: 63 KAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRA 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.396
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,657,015
Number of extensions: 131815
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 58
Length of query: 691
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 599
Effective length of database: 1,144,436
Effective search space: 685517164
Effective search space used: 685517164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)