BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7894
(1006 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350418690|ref|XP_003491936.1| PREDICTED: hypothetical protein LOC100746784 [Bombus impatiens]
Length = 1271
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/534 (46%), Positives = 346/534 (64%), Gaps = 18/534 (3%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKT 79
+ F VQ A+ +I K A S P+ + P+++ + +M ++ LL
Sbjct: 29 ENFHDYVQEAFDAIKLGIKCANSLPTGSNFNYYSCFPSFLKAKEENTKLIMDVMQHLLGL 88
Query: 80 QNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAG----TKTPSVLPS---QPKIV 132
I ++S L +E + D+L E ND LL+ N +D G T+ ++ S QP +
Sbjct: 89 AGIKGNISNLDIEEKFDLLLETNDMLLDRANALMDKECGIAKNTEVELLVSSAKDQPDGI 148
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWNK S + + + +A I+RPQL FK K+DNS + + P++
Sbjct: 149 NGSWNKKVYRSQDTENIQSVRLLAAK---------NIQRPQLTFKDKIDNS-SKPWCPRI 198
Query: 193 KEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMI 252
K+KPN+LKPLAI LE+ + E F HPYEYELD++VP D LK PK+ PL +T L+MI
Sbjct: 199 KDKPNSLKPLAIYLEEGENGEIFSHPYEYELDMFVPPNDQLKKSVPKKYKPLEETLLVMI 258
Query: 253 TEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV 312
+P + L+ +LK+ +EIA+DLE+H+YRS+QG TCLMQIST D DY++DTL LR +L
Sbjct: 259 KDPSDIKLLIEDLKRYKEIAVDLEHHSYRSFQGITCLMQISTGDTDYLIDTLSLRSELHE 318
Query: 313 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYC 372
LNE+ T I+KVFHGAD DI+WLQ+D LYVV MFDTHQA K L MP SLAYLLKHYC
Sbjct: 319 LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQLNMPYLSLAYLLKHYC 378
Query: 373 DVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFT 432
+VD DK FQ+ DWR RPLPE ++YAR DTHYLLY+ D ++ L A+G+ N++ + +
Sbjct: 379 NVDPDKHFQMADWRIRPLPEKLMKYAREDTHYLLYIKDLLRNALIDVANGQINILKAVYD 438
Query: 433 NSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYV 491
S ICK Y KPV+ EE M ++R S + NN+Q YAL+EL+KWRD+ AR +D+S YV
Sbjct: 439 RSTEICKKTYIKPVWTEESCMIMYRKSQKMFNNKQLYALKELHKWRDQTARGEDDSIAYV 498
Query: 492 LPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
LPNHMLL +A+++PR++QGI ACC+ +P V++++L +H IILKAR Q L KP+
Sbjct: 499 LPNHMLLNIAETLPREMQGILACCDSIPPLVRQNLLKLHKIILKAREQPLIKPI 552
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 69/83 (83%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YAL+EL+KWRD+ AR +D+S YVLPNHMLL +A+++PR++QGI ACC+ +P V
Sbjct: 470 NNKQLYALKELHKWRDQTARGEDDSIAYVLPNHMLLNIAETLPREMQGILACCDSIPPLV 529
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++++L +H IILKAR QPL KP+
Sbjct: 530 RQNLLKLHKIILKAREQPLIKPI 552
>gi|340723182|ref|XP_003399974.1| PREDICTED: exosome component 10-like [Bombus terrestris]
Length = 1295
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/535 (47%), Positives = 346/535 (64%), Gaps = 20/535 (3%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMT-LVDSLLK 78
+ F VQ A+ +I K A + P+ + P+++ V + K++T ++ LL
Sbjct: 29 ENFHDYVQEAFDAIKLGIKCANNLPTGSNFNYYSCFPSFLK-VKDENTKLLTGVMQHLLG 87
Query: 79 TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAG-TKTPSV------LPSQPKI 131
+ ++S L +E + D+L E ND LL+ N +D G TK V P
Sbjct: 88 LAGVKGNISNLDIEEKFDLLLETNDMLLDRANALMDKECGITKNTEVELLVSSTKGHPDG 147
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWNK A S + H + I+RPQL FK K+DNS + + P+
Sbjct: 148 INGSWNKQAYRSQATENTHSVSLLAGK---------NIQRPQLMFKDKIDNS-SKPWCPR 197
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMM 251
+K+KPN+LKPLAI LE+ + E F HPYEYELD++VP D LK P++ PL +T L+M
Sbjct: 198 IKDKPNSLKPLAIYLEEGENGEIFSHPYEYELDMFVPPNDQLKKSVPRKYKPLEETLLVM 257
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I +P + L+ +LK+ +EIA+DLE+H+YRS+QG TCLMQIST D DY++DTL LR +L
Sbjct: 258 IKDPSDIELLIEDLKRYKEIAVDLEHHSYRSFQGITCLMQISTGDTDYLIDTLSLRSELH 317
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHY 371
LNE+ T I+KVFHGAD DI+WLQ+D LYVV MFDTHQA K L +P SLAYLLKHY
Sbjct: 318 ELNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQLNLPYLSLAYLLKHY 377
Query: 372 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
C+VD DK FQ+ DWR RPLPE I+YAR DTHYLLY+ D ++ L A+G+ N++ + +
Sbjct: 378 CNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDLLRNALIDVANGQINILKAVY 437
Query: 432 TNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
S ICK Y KPV+ EE M ++R S + NN+Q YAL+EL+KWRD+ AR +D+S GY
Sbjct: 438 DRSTEICKNTYIKPVWTEESCMIMYRKSQKMFNNKQLYALKELHKWRDQTARGEDDSIGY 497
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
VLPNHMLL +A+++PR++QGI ACC+ +P V++++L +H IILKAR Q L KPV
Sbjct: 498 VLPNHMLLNIAETLPREMQGILACCDSIPPLVRQNLLKLHKIILKAREQPLIKPV 552
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 70/83 (84%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YAL+EL+KWRD+ AR +D+S GYVLPNHMLL +A+++PR++QGI ACC+ +P V
Sbjct: 470 NNKQLYALKELHKWRDQTARGEDDSIGYVLPNHMLLNIAETLPREMQGILACCDSIPPLV 529
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++++L +H IILKAR QPL KPV
Sbjct: 530 RQNLLKLHKIILKAREQPLIKPV 552
>gi|383849711|ref|XP_003700481.1| PREDICTED: exosome component 10-like [Megachile rotundata]
Length = 1271
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 253/562 (45%), Positives = 355/562 (63%), Gaps = 30/562 (5%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
FD VQ ++ +I K + S P + P+++ V+ ++ +L T
Sbjct: 39 FDNYVQESFDAIRAGIKVSNSLPVGSDFRYYSCFPSFLDAKDRNIKLVLNVMQRVLATVG 98
Query: 82 ISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS-----VLPSQPKIVKESW 136
I ++S ++ + D+L E ND L+ N +D G S V + +IV SW
Sbjct: 99 IKNNISNRGVDEKFDLLLETNDIFLDRANELMDKECGVMRNSEVELVVTRANKQIVNGSW 158
Query: 137 NKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKP 196
N + + S L G ++RPQL FK K+DNS + + PK+K+KP
Sbjct: 159 NNQICRA-------PQQTDSTQSVRLLAGR-NVQRPQLMFKDKIDNS-SKPWSPKIKDKP 209
Query: 197 NALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPE 256
N+LKPLAI E+ + E + HPYE+ELD++ P+ D LK EPK+ L DTPL++I P
Sbjct: 210 NSLKPLAIYTEESENGEVYSHPYEFELDMFSPRMDQLKKCEPKKYKSLEDTPLIIIENPV 269
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
+ L+ +LK+ +EIA+DLE+H+YRS+QG TCLMQIST D DY++DTL LR +L LNE+
Sbjct: 270 DIKLLLEDLKRYKEIAVDLEHHSYRSFQGITCLMQISTGDADYLIDTLSLRSELHELNEI 329
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
T I+KVFHGAD DI+WLQ+D LY+V MFDTHQA K L +P SLAYLLKHYC++D
Sbjct: 330 FTKPTILKVFHGADLDIQWLQRDLSLYIVNMFDTHQAAKQLNLPYLSLAYLLKHYCNIDP 389
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN 436
+K FQL DWR RPLPE +YAR DTHYLLY+ D ++ L AA+G+ N++ S + S +
Sbjct: 390 NKHFQLADWRIRPLPEELQKYAREDTHYLLYIKDILRNALIDAANGQINILKSVYDRSTD 449
Query: 437 ICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNH 495
ICK Y KP++ EE M+I+R S + NN+Q YAL EL+KWRD AR++D+ST YVLPNH
Sbjct: 450 ICKKTYVKPIWTEESCMSIYRKSQKMFNNKQLYALIELHKWRDVTAREEDDSTAYVLPNH 509
Query: 496 MLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGM 555
MLL +A+++PR++QGI ACCNP+P V++++L +H IILKAR Q L KPV LD +
Sbjct: 510 MLLNIAETLPREMQGILACCNPIPPLVRQNLLKLHKIILKAREQPLIKPV------LDDL 563
Query: 556 KKK--QQQQVS-------PPHD 568
+++ Q+ Q++ PHD
Sbjct: 564 RQRLGQRNQIANSEAWMYSPHD 585
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 14/115 (12%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YAL EL+KWRD AR++D+ST YVLPNHMLL +A+++PR++QGI ACCNP+P V
Sbjct: 477 NNKQLYALIELHKWRDVTAREEDDSTAYVLPNHMLLNIAETLPREMQGILACCNPIPPLV 536
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKK-KQQQQVS-------PPHD 676
++++L +H IILKAR QPL KPV LD ++++ Q+ Q++ PHD
Sbjct: 537 RQNLLKLHKIILKAREQPLIKPV------LDDLRQRLGQRNQIANSEAWMYSPHD 585
>gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
Length = 905
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 273/719 (37%), Positives = 400/719 (55%), Gaps = 46/719 (6%)
Query: 3 DTNQEIPKSDEANKELSKTFDV--LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYIS 60
D ++ PK + A S D+ + A+K++V T+ SFP SL + P Y
Sbjct: 16 DQPEQPPKIESAPAPDSGIGDIKDFTKQAFKNVVAATRACNSFPQGTARSLYLGYPGYSR 75
Query: 61 GVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAG-- 118
+ S ++M L+ S+++ + I + K + E Q +++ E ND + E I T +D+ AG
Sbjct: 76 VIDDLSQRLMGLIGSVMQAEEIKGDIKKRHTEEQFEMVQECNDIIFERITTNLDIKAGQR 135
Query: 119 --------TKTPSVLPSQPKI-----VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKG 165
T+ + PS P + +S A + N W SA F
Sbjct: 136 RKPHMVLETQVDVMSPSTPAATAPAELAKSETPKAGSWNRWPPTPQRNVLSARLF----A 191
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYEL 223
A I RPQ+ FK VDNS + F P+LKEKPN+LKPLA+L E +A + ++ HPYE+EL
Sbjct: 192 AKNIMRPQMNFKTPVDNSDQNPFVPRLKEKPNSLKPLALLPEYDEAGNVHAYLHPYEFEL 251
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
P + L+ + P P + T LM++ E++ Q + EL++ IAID+E+H+YR++
Sbjct: 252 MKLEPSAEQLQRQTPLLPAPPAATELMLVDSVEKLNQALEELRRAPHIAIDVEHHSYRTF 311
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCL+Q+STR KDYI D+L LRE++ VLN VLTD VK+ HGAD DI+WLQ+D LY
Sbjct: 312 MGITCLVQMSTRTKDYIFDSLALREEMHVLNLVLTDPKKVKILHGADQDIEWLQRDLSLY 371
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTH+A K L M R SLA+LLKHY D+D DK+ QL DWR RPLP+ I YAR DTH
Sbjct: 372 VVNMFDTHRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQDTH 431
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALL 462
YL+YVY+ M DL A G+ + + + S +CK +Y KP E ++++ R +
Sbjct: 432 YLIYVYERMTNDLLQAEQGQSQALRTVYQLSTEVCKKRYTKPHVGPESHLDLVRKTKRSF 491
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
+N+Q +ALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 492 DNRQLHALRGIFQWRDATARQEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 551
Query: 523 KEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQK----YALR 578
++ + +H I+LKAR Q L KP+ ++ + Q QV PP + K +
Sbjct: 552 RQQLHALHQIVLKAREQPLVKPI---------LEARSQPQVLPPTSKDYGSKLYCPHDFT 602
Query: 579 ELYKWRDRIAR--DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
L + RD + +++ S LP + Q +P + + P T E + +
Sbjct: 603 HLEETRDDLPTLLNRNASGKLQLPA-VEEQPRDDVPLAVPAMTLFAKPTVSTPDEEMRLV 661
Query: 637 HAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPVFPNNII 695
H L+ Q L P ++ L M++ K Q+ DS + L + PP P I
Sbjct: 662 H---LRKESQVLRMPYKRYLAILPLMEQVKADQRA---RDSKELLKRRLCPPATPTEDI 714
>gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba]
gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba]
Length = 900
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/583 (42%), Positives = 354/583 (60%), Gaps = 29/583 (4%)
Query: 9 PKSDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDK 68
P NK + + +K+++ TK A +FP SL ++ P Y + S +
Sbjct: 18 PPEQPPNKSAPENVEAFTNQGFKNVIAATKAANAFPQGTARSLYLSYPGYARVMDDLSQR 77
Query: 69 VMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK-------- 120
V+ L++++LK NI + K +E Q +++ E+ND L E I T +D+ +G +
Sbjct: 78 VVALIENVLKANNIKGDIRKRQVEEQFEMVQESNDILFERITTNLDIKSGLRRNPQQVVE 137
Query: 121 -----TPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKK---SANWFMLNKGAVEIERP 172
S ++P V + KA + W ++ SA F A I RP
Sbjct: 138 TQVDVMSSSTSAEPAEVSPQTQETPKAGS-WNRTTGTPQRNMVSARLFT----AKNIVRP 192
Query: 173 QLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKE 230
Q QFK VDNS + F P+LKEKPN+LKPLA+L E DA I+S+ HPYE+EL + P
Sbjct: 193 QTQFKEPVDNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNIQSYLHPYEFELLKFQPAA 252
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLM 290
D L+ ++P +++T LM++ E++ Q + EL+Q +IAID+E+H+YR++ G TCL+
Sbjct: 253 DQLQKQKPVLPALMANTELMVVDTVEKLEQALEELRQAPQIAIDVEHHSYRTFMGITCLV 312
Query: 291 QISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
Q+STR KDYI DTL LR+++ +LN VLTD +K+ HGAD DI+WLQ+D LY+V MFDT
Sbjct: 313 QMSTRSKDYIFDTLILRDEMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 372
Query: 351 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 410
H+A K L + R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+YVY+
Sbjct: 373 HRAAKALNLARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYE 432
Query: 411 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYA 469
M DL H L+ S + S ++CK +Y KP E ++++ R + +N+Q YA
Sbjct: 433 RMTNDL-LQQHADPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYA 491
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 529
LR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +
Sbjct: 492 LRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTL 551
Query: 530 HAIILKARLQSLTKPV----EKLQPSLDGMKKKQQQQVSPPHD 568
H I+LKAR Q L KP+ Q SL K ++ PHD
Sbjct: 552 HQIVLKARDQPLVKPILEARSSTQASLPPSTKDFSSKLYCPHD 594
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 169/347 (48%), Gaps = 42/347 (12%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 485 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 544
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGM---KKKKQQQQVSPPHDSMDCLNYKGL 686
++ + +H I+LKAR QPL KP+ + + S K ++ PHD +
Sbjct: 545 RQQLHTLHQIVLKARDQPLVKPILEARSSTQASLPPSTKDFSSKLYCPHDFSHLEEIRDD 604
Query: 687 PPVFPNNIICAPSNTHLSSYDPQDKKIAQIGL--------FFEDKMKIGSNKYQK---IK 735
P + S+T P+ +++A GL FE + K + Q+ ++
Sbjct: 605 LPT-----LLKRSSTSGKLEIPRSEEVANEGLPIAAPAMALFEKQSKPTQEEEQRWAHLR 659
Query: 736 LKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKID--ALTPQVKTEPEENVKITQEP 793
++ PY+R+L +Q K D+ E+ ++ L P T E+N+K+
Sbjct: 660 KESQTLRMPYKRYLAI--LPLMVQLKADQLARERSELQKRQLCPTAPTV-EQNIKLEAH- 715
Query: 794 VVLKQIKSEEKEKVEM---EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHK 850
IK EE + E+ KRK + + ++QP T K +P + + +
Sbjct: 716 ----AIKKEEDVVYSVPLKEQLKRKHPQANGKTDADQQPTTSK----RPRKDENRQPKPP 767
Query: 851 IKSEPKE------NDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
+K+EP E +S E E E+ + K P +N + K+
Sbjct: 768 VKTEPVEEVQQGAGESDDEVVEVPIERQATERPKPSPAQNKRQQKKN 814
>gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis]
gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis]
Length = 903
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 267/695 (38%), Positives = 389/695 (55%), Gaps = 44/695 (6%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISK 84
+ A+K++V T+ SFP SL + P Y + S ++M L+ ++++ + I
Sbjct: 40 FTKQAFKNVVAATRACNSFPQGTARSLYLGYPGYSRVIDDLSQRLMGLIGNVMQAEEIKG 99
Query: 85 SMSKLYLEGQKDILTEANDKLLESINTRIDVMAG----------TKTPSVLPSQPKIVK- 133
+ K + E Q +++ E ND + E I T +D+ AG T+ + PS P
Sbjct: 100 DIKKRHTEEQFEMVQECNDIIFERITTNLDIKAGQRRKPHMVLETQVDVMSPSTPAATAP 159
Query: 134 ----ESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
+S A + N W SA F A I RPQ+ FK VDNS + F
Sbjct: 160 AEFAKSETPKAGSWNRWPPTPQRNVLSARLF----AAKNIMRPQMNFKTPVDNSDQNPFV 215
Query: 190 PKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+LKEKPN+LKPLA+L E +A + ++ HPYE+EL P + L+ + P P + T
Sbjct: 216 PRLKEKPNSLKPLALLPEYDEAGNVHAYLHPYEFELMKLEPSAEQLQRQTPLLPAPPAAT 275
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
LM++ E++ Q + EL++ IAID+E+H+YR++ G TCL+Q+STR KDYI D+L LR
Sbjct: 276 ELMLVDSVEKLNQALEELRRAPHIAIDVEHHSYRTFMGITCLVQMSTRTKDYIFDSLALR 335
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
E++ VLN VLTD VK+ HGAD DI+WLQ+D LYVV MFDTH+A K L M R SLA+L
Sbjct: 336 EEMHVLNLVLTDPKKVKILHGADQDIEWLQRDLSLYVVNMFDTHRAAKALNMARLSLAFL 395
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
LKHY D+D DK+ QL DWR RPLP+ I YAR DTHYL+YVY+ M D+ A G+ +
Sbjct: 396 LKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDILQAEQGQSQAL 455
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDE 486
+ + S +CK +Y KP E ++++ R + +N+Q +ALR L++WRD AR +DE
Sbjct: 456 RTVYQLSMEVCKKRYTKPHIGPESHLDLVRKTKRSFDNRQLHALRGLFQWRDATARQEDE 515
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
S GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+LKAR Q L KP+
Sbjct: 516 SYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHALHQIVLKAREQPLVKPI- 574
Query: 547 KLQPSLDGMKKKQQQQVSPPHDSNNQQK----YALRELYKWRDRIAR--DKDESTGYVLP 600
++ + Q QV PP + K + L + RD + ++ + LP
Sbjct: 575 --------LEARSQPQVLPPTSKDYGSKLYCPHDFTHLEETRDDLPTLLSRNAAGKLQLP 626
Query: 601 NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQPSLD 660
+ Q +P + + P T E + +H L+ Q L P ++ L
Sbjct: 627 A-VEEQPRDDVPLAVPAMTLFAKPTASTPDEEMRLVH---LRKESQVLRMPYKRYLAILP 682
Query: 661 GMKKKKQQQQVSPPHDSMDCLNYKGLPPVFPNNII 695
M++ K QQ DS + L + PPV P I
Sbjct: 683 LMEQVKADQQA---RDSKELLKRRLCPPVTPTEDI 714
>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
Length = 1271
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 251/545 (46%), Positives = 349/545 (64%), Gaps = 25/545 (4%)
Query: 15 NKELSK------TFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDK 68
NKE+++ +F VQ A+ + K A + P+ + P++
Sbjct: 23 NKEINQIIPGYASFHDYVQEAFHVMKLGIKNANNLPTGSNFNYYSCFPSFRKNKDDNIKL 82
Query: 69 VMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAG-TKTPSV--- 124
++ +V +L + ++S +E + D+L EAND LL+ N +D G TK V
Sbjct: 83 LLNVVQHVLGITGVKNNISNRDIEEKFDLLLEANDVLLDRANALMDKECGITKNSEVEVV 142
Query: 125 ---LPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVD 181
L +QP + WN + + Q + ++ + + K I+RPQL FK K+D
Sbjct: 143 VSHLKNQP--INGGWN-----NQICQPLQISENAQSIRLLAGKN---IQRPQLMFKDKID 192
Query: 182 NSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQA 241
NS + + P++K+KPN+LKPLAI LE+ + E F HPYEYEL+++VP D LK EP +
Sbjct: 193 NS-SKPWCPRIKDKPNSLKPLAIYLEESENGEVFNHPYEYELNMFVPPNDQLKKSEPTKY 251
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
L DT L+MI +P + L+++LKQ +EIA+DLE+H+YRS+QG TCLMQIST DKDY++
Sbjct: 252 KNLEDTLLVMIKDPSDIKLLINDLKQYKEIAVDLEHHSYRSFQGITCLMQISTEDKDYLI 311
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
DTL LR +L LNE+ T I+KVFHGAD DI+WLQ+D LYVV MFDTHQA K L +P
Sbjct: 312 DTLSLRSELHELNEIFTKPTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQLNLPY 371
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
SLAYLLKHYC+VD DK FQ+ DWR RPLPE I+YAR DTHYLLY+ D +K L A+
Sbjct: 372 LSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDMLKNALIDVAN 431
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRI 480
G+ N++ + S ICK Y KP++ EE M ++R S + NN+Q YALREL+KWRD
Sbjct: 432 GQINILKVVYDRSTEICKKTYVKPIWTEENCMTMYRKSQKMFNNKQLYALRELHKWRDDT 491
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
AR +D+S YVLPNHMLL +A+++PR++QGI ACC+ +P V++++L +H IILKAR Q
Sbjct: 492 ARIEDDSIAYVLPNHMLLNIAETLPREMQGILACCDSIPPLVRQNLLKLHKIILKAREQP 551
Query: 541 LTKPV 545
L KP+
Sbjct: 552 LIKPI 556
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 68/83 (81%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YALREL+KWRD AR +D+S YVLPNHMLL +A+++PR++QGI ACC+ +P V
Sbjct: 474 NNKQLYALRELHKWRDDTARIEDDSIAYVLPNHMLLNIAETLPREMQGILACCDSIPPLV 533
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++++L +H IILKAR QPL KP+
Sbjct: 534 RQNLLKLHKIILKAREQPLIKPI 556
>gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis]
gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis]
Length = 904
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/574 (42%), Positives = 356/574 (62%), Gaps = 37/574 (6%)
Query: 29 AYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSK 88
A++++V T+ +FP SL ++ P Y + S +V+ L+ +LKT+NIS + +
Sbjct: 41 AFRNVVAATRNCNAFPQGAARSLYLSYPGYARMLEEQSQRVLGLISKVLKTENISGDIKR 100
Query: 89 LYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVL------------PSQPKIVKE 134
+ Q +++ E ND L E I T +D+++G + P ++ + I KE
Sbjct: 101 CQGDEQLELVQECNDILFERITTNLDIISGLRRGNPHMVVETQVDVQSTSKAATSTITKE 160
Query: 135 -----SWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
SWN+ + A SA F A I RPQ+QFKV VDNS + F+
Sbjct: 161 TPRAGSWNRYSTAP----ATPSRSMVSARLFT----AQNIMRPQIQFKVPVDNSAQNPFK 212
Query: 190 PKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+LKEKPN+LKPLA+L E DA + SF HPYE+EL + P ++ L+ ++P P + T
Sbjct: 213 PRLKEKPNSLKPLALLPEYDDAGNVVSFLHPYEFELLKFEPPKEQLQKQKPLLPAPPAQT 272
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
LM++ E + Q + EL+Q +IAID+E+H+YR++ G TCL+Q+STR KDYI DTL LR
Sbjct: 273 ELMLVDNVETLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRTKDYIFDTLTLR 332
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
ED+ +LN VLTD ++K+ HG D DI+WLQ+D LY+V MFDTH+A K L M R SLA+L
Sbjct: 333 EDMHILNLVLTDPKVLKILHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAFL 392
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
LKHY D+D DK+ QL DWR RPLP+ I YAR DTHYL+YVY+ + DL A G Q L
Sbjct: 393 LKHYLDLDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYVYERLTNDLLQAEQGPQALR 452
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDE 486
+ + S +CK +Y KP + ++++ R + +N+Q ALR ++ WRD AR +DE
Sbjct: 453 M-VYQMSTEVCKKRYTKPHIGPDSHLDLVRKTKRSFDNRQLSALRGIFVWRDATARQEDE 511
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
S GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+L+AR Q L KP+
Sbjct: 512 SYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLRAREQPLVKPIL 571
Query: 547 KLQPSLDG------MKKKQQQQVSPPHDSNNQQK 574
+ ++ G K +++ PHD ++Q++
Sbjct: 572 EASNNITGPILLQITNKDYNSKLNCPHDFSHQEE 605
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 199/412 (48%), Gaps = 43/412 (10%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q ALR ++ WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 488 DNRQLSALRGIFVWRDATARQEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 547
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDG-----MKKKKQQQQVSPPHD-SMDCLNY 683
++ + +H I+L+AR QPL KP+ + ++ G + K +++ PHD S
Sbjct: 548 RQQLHTLHQIVLRAREQPLVKPILEASNNITGPILLQITNKDYNSKLNCPHDFSHQEETR 607
Query: 684 KGLPPVFPNNI---ICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSR 740
LP + N + PS L + P A F K + S + +++L +R
Sbjct: 608 DDLPTLLGLNGSGKLQRPSKPRLEA--PSVPLAAPTLSLF--KRQTASTQEDQLRLLRAR 663
Query: 741 FET-----PYQRFLKSKEYAKAIQ-EKVDKENAE--QKKIDALTPQ-VKTEPEENVKITQ 791
E+ PY+R++ + + E+ KEN E ++++ P V + E K+ +
Sbjct: 664 KESQTMRMPYKRYMAILPLMQQQKIEQTAKENNELLKRRLCPAEPAPVNIKLESTTKVDE 723
Query: 792 EPVVLKQIKSEEKEKVEMEKEKRKKILREREEEK------------EEQPATKKIKVEKP 839
+PV +K + K K + ++ R + EEK + +P +
Sbjct: 724 DPVYKLPLKEQLKRKHQPTADQPSLAKRNKNEEKPSASMSGAKPKVKNEPMAAIDQTPNA 783
Query: 840 EESNEKTK-QHKIKSEPKENDSS--KEKPEESNEKTKRHKIKSEPKENDSSK----GKSG 892
E+S++ + I+ P EN + + ++ EK KR K K+ + S+K +
Sbjct: 784 EDSDDDAVIEVPIEKSPTENPTPALSRRQQKRQEKNKRFKAKARTQAQSSNKPVQLPTNT 843
Query: 893 GTISTVDFSKVNYNKYM--AKPGKSNQKKKGKGGKQNKKKKNSKRKPFLFLW 942
T D+ V++ ++ AK +S + K GK +N+K+ LF +
Sbjct: 844 ATAQNFDYKNVDFRQFQGGAKRAQSTEIKSQMRGKSRHNNRNNKQFNKLFTF 895
>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
Length = 796
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/530 (45%), Positives = 332/530 (62%), Gaps = 25/530 (4%)
Query: 28 NAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMS 87
N IV K+ + P+ + L P+++ + ++K++ + +LK ++ +
Sbjct: 39 NGQSMIVNGMKSVLALPAGNCRDLYATHPSFVRIMDAQANKILHTISDVLKMHDVKGNFV 98
Query: 88 KLYLEGQKDILTEANDKLLESINTRIDVMAGTK---------TPSVLPSQPKIVKESWNK 138
E + ++L E ND +LE IN+ +D +AG K + LP P+
Sbjct: 99 ARDREERFELLQEFNDTILERINSNLDEIAGIKKKHETVLLHSEIQLPVTPR-------- 150
Query: 139 NAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNA 198
K S W E ++ K L G I RPQ+ FKV VDNS F PK+K+KPN+
Sbjct: 151 -QKVSGSWNESSNSGKSPVVRATLVTGT-NIVRPQINFKVPVDNSALNPFVPKIKDKPNS 208
Query: 199 LKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPE 256
LKPLA+L E +A I S+ HPYE+ELD + P + LK EP++ L L TPL I + +
Sbjct: 209 LKPLAVLPEYDEAGNIVSYLHPYEFELDRFEPSKKALKSVEPQEPLDLESTPLDFIDKED 268
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
QV L+ EL+Q +E+AIDLE+H+YR++QG+TCLMQISTR KDYI+DTL LRE+L VLNEV
Sbjct: 269 QVAPLLEELRQAKELAIDLEHHSYRTFQGFTCLMQISTRTKDYIIDTLALREELHVLNEV 328
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
TD +VKV HG+ SDI+WLQ+D LYVV MFDT +A K L R L +LLKHYC++++
Sbjct: 329 FTDTKVVKVLHGSISDIEWLQRDLALYVVNMFDTGEAAKVLEFSRIGLQFLLKHYCNIET 388
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN 436
DK +QL DWR RP+P+ I+YAR DTHYLLY+YD M+ +L + + + + S
Sbjct: 389 DKAYQLADWRIRPIPKNFIEYARKDTHYLLYIYDRMRNELIEKG---ASFLQTVYNKSTF 445
Query: 437 ICKLKYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNH 495
+CK +YEKPV NE+ MNI+ RS + + +Q YA RE+ WRD+ AR +DES GYVLP H
Sbjct: 446 LCKHRYEKPVINEDSIMNIYHRSKHVFDQRQMYAFREILYWRDKTARLEDESAGYVLPQH 505
Query: 496 MLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
M L +A +PR++QGI ACC PVP V++H+ +HAIILKAR L K V
Sbjct: 506 MALDIASKLPREMQGIIACCTPVPSLVRQHLHTLHAIILKAREIPLNKSV 555
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 61/86 (70%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 626
H + +Q YA RE+ WRD+ AR +DES GYVLP HM L +A +PR++QGI ACC PVP
Sbjct: 470 HVFDQRQMYAFREILYWRDKTARLEDESAGYVLPQHMALDIASKLPREMQGIIACCTPVP 529
Query: 627 QTVKEHVLDIHAIILKARLQPLTKPV 652
V++H+ +HAIILKAR PL K V
Sbjct: 530 SLVRQHLHTLHAIILKAREIPLNKSV 555
>gi|345478840|ref|XP_001599044.2| PREDICTED: exosome component 10 [Nasonia vitripennis]
Length = 1163
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 250/560 (44%), Positives = 363/560 (64%), Gaps = 27/560 (4%)
Query: 27 QNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSM 86
Q ++ I K + S PS + P + K++ + +++ I+ ++
Sbjct: 412 QKSFAVIKDGIKASNSLPSADNFNYYTCFPTFNEIRNEQIKKILNSMQGIVERAGIAGNI 471
Query: 87 SKLYLEGQKDILTEANDKLLESINTRIDVMAG-TKTPSV--LPSQ---PKIVKESWNKNA 140
+ +E + D++ E+ND L+ +D +G +K P+V + SQ P+ V SWN N
Sbjct: 472 KQRDIEEKFDLILESNDIYLDQAGLCMDEASGISKNPTVELIISQTNSPRHVNGSWNTNN 531
Query: 141 KASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALK 200
SN + + + +L A I+RPQL FK K+DNS ++ +EPK+K KPN+LK
Sbjct: 532 --SNTAKSASQSSNPAQAVRLL--AAKNIQRPQLTFKDKIDNS-QKPWEPKIKYKPNSLK 586
Query: 201 PLAILLEKYD-AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 259
PLAI LE D E FCHPYE+ELD + P E L + P + P+ DTPL++I + + +
Sbjct: 587 PLAIYLECGDEGEEIFCHPYEFELDKFQPPEKQLVKKRPTKYKPVLDTPLIVIEKVQDLK 646
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
L+ +L++ EIA+DLE+H+YRS+QG TCLMQIST+D DY++DTL LR +L VLNE+ T
Sbjct: 647 ILLEDLEKYNEIAVDLEHHSYRSFQGITCLMQISTKDTDYLIDTLTLRSELHVLNEIFTK 706
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
+I+KVFHGADSDI WLQ+D GLY+V MFDT+QA K L +P SL+YLLK +C++ ++K
Sbjct: 707 PSILKVFHGADSDILWLQRDLGLYIVNMFDTYQAAKQLGLPFLSLSYLLKTHCEISANKH 766
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
FQL DWR RPLPE ++YAR DTHYLLY+ D + L +A+G+ N++ + +T S +ICK
Sbjct: 767 FQLADWRIRPLPEELMKYAREDTHYLLYIKDILSNALIDSANGQSNILKAVYTRSTDICK 826
Query: 440 LKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
Y KPV+ E Y ++R S + NN+Q +AL+EL+KWRD AR +D+ST YVLPNHMLL
Sbjct: 827 QTYTKPVWTENSYKAMYRKSQKMFNNRQLFALQELHKWRDETARAEDDSTNYVLPNHMLL 886
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKK 558
+A+++PR++QGI ACCNP+P V++++L IH +ILKAR Q L KP+ + D MK++
Sbjct: 887 NIAETLPREMQGILACCNPIPPLVRQNLLKIHKMILKAREQPLIKPILE-----DDMKQR 941
Query: 559 --QQQQVS-------PPHDS 569
Q+ QVS PHD+
Sbjct: 942 LTQRNQVSNSESWIFAPHDT 961
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 144/276 (52%), Gaps = 37/276 (13%)
Query: 539 QSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYV 598
Q+ TKPV + S M +K Q+ NN+Q +AL+EL+KWRD AR +D+ST YV
Sbjct: 827 QTYTKPVWT-ENSYKAMYRKSQKMF------NNRQLFALQELHKWRDETARAEDDSTNYV 879
Query: 599 LPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQPS 658
LPNHMLL +A+++PR++QGI ACCNP+P V++++L IH +ILKAR QPL KP+ +
Sbjct: 880 LPNHMLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKMILKAREQPLIKPILE---- 935
Query: 659 LDGMKKK-KQQQQVS-------PPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQD 710
D MK++ Q+ QVS PHD+ + + P N S+T +
Sbjct: 936 -DDMKQRLTQRNQVSNSESWIFAPHDTPSGMEAEANLPCLLNT-----SSTENKVMNETK 989
Query: 711 KKIAQIGLFFEDKMKIGSNKYQKIKLKTSR--FETPYQRFLKSK----EYAKAIQEKVDK 764
K A I +F G + + K + F +P++R+ + E + +EK ++
Sbjct: 990 LKPA-INIFESSSEDEGGDSRSENSRKKGKLVFISPFERYKRVMPMIVEEERKAREKAEQ 1048
Query: 765 ENAE-----QKKIDALTPQVKTEPEENVKITQEPVV 795
E AE QK + E V + QE V+
Sbjct: 1049 EEAERIRKLQKSQQDTAASISRVHEHFVTVVQENVI 1084
>gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis]
gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis]
Length = 901
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/539 (42%), Positives = 346/539 (64%), Gaps = 28/539 (5%)
Query: 28 NAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMS 87
+AY+++V T+ + P S+ ++ P Y + S +V+ L++ +LKT+NIS +
Sbjct: 42 DAYRNVVAATRICNTLPQGAARSVYMSYPGYARMLEEQSQRVLGLINKVLKTENISGDIR 101
Query: 88 KLYLEGQKDILTEANDKLLESINTRIDVMAGTKT---PSVLPSQPKIVKESWNKNAKASN 144
+ + Q +++ E ND L E I T +D+ +G + P V+ +Q + +S ++ AK S
Sbjct: 102 RRQGDEQLEMVQEYNDILFERITTNLDIRSGLRRGNQPVVVETQVDV--QSTSRAAKPST 159
Query: 145 VWQEVHDNKKKSANWFMLNKG---------------AVEIERPQLQFKVKVDNSYEQLFE 189
V +E ++ +W + A I RPQ+QFKV VDNS + F
Sbjct: 160 VTKE----SPRAGSWNRCSTTPGTPTRNTVSARLFTAQNIMRPQMQFKVPVDNSAQNPFR 215
Query: 190 PKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+L EKPN+LKPLA+L E D + SF HPYE+EL + P + L+ ++P P + T
Sbjct: 216 PRLTEKPNSLKPLALLPEYDDTGNVVSFLHPYEFELLKFEPPSEQLQKQKPVLPAPPAQT 275
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
LM++ + + Q ++EL++ +IAID+E+H+YR++ G TCL+Q+STR KDYI DTLKLR
Sbjct: 276 ELMLVDSVDALQQALTELRKASQIAIDVEHHSYRTFMGITCLVQMSTRTKDYIFDTLKLR 335
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
E++ +LN VLTD ++K+ HGAD DI+WLQ+D LY+V MFDTH+A K L M R SLA+L
Sbjct: 336 EEMHILNLVLTDPKVLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAFL 395
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
LKHY D+D DK+ QL DWR RPLP+ I YAR DTHYL+Y+Y+ + DL + G Q L
Sbjct: 396 LKHYLDLDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYIYERLTNDLLQSEQGLQGLR 455
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDE 486
+ + S ++CK +Y KP + ++++ R + +N+Q +ALR ++ WRD AR +DE
Sbjct: 456 M-VYQMSTDVCKKRYTKPHIGPDSHLDLVRKTKRSFDNRQLHALRGIFVWRDSTARQEDE 514
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
S GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+L+AR Q L KP+
Sbjct: 515 SYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLNTLHQIVLRAREQPLIKPI 573
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 67/83 (80%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q +ALR ++ WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 491 DNRQLHALRGIFVWRDSTARQEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 550
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++ + +H I+L+AR QPL KP+
Sbjct: 551 RQQLNTLHQIVLRAREQPLIKPI 573
>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
gi|108873835|gb|EAT38060.1| AAEL010007-PA [Aedes aegypti]
Length = 949
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 240/528 (45%), Positives = 336/528 (63%), Gaps = 24/528 (4%)
Query: 31 KSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLY 90
K ++ K+ + PS + L P+++ + ++KV+ ++ +LK I ++
Sbjct: 49 KLLLDGMKSVLALPSGNSRDLYDTHPSFVRIMDTQANKVLHMISDVLKLHEIKGNIVVRD 108
Query: 91 LEGQKDILTEANDKLLESINTRIDVMAGTK---------TPSVLPSQPK-IVKESWNKNA 140
E + ++L E ND +LE IN+ +D +AG K + LP++P+ + SWN +
Sbjct: 109 REEKFELLQEFNDSMLERINSNLDEVAGIKKKHETVLVQSEIQLPAEPRQRLSGSWNNAS 168
Query: 141 KASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALK 200
K + L G I+RPQ+ FKV VDNS F PK+KEKPN++K
Sbjct: 169 KTPAA-------SVAAVVKATLVTG-TNIQRPQVNFKVPVDNSPLNPFVPKIKEKPNSMK 220
Query: 201 PLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQV 258
PLA+L E +A I S+ HPYE+ELD + P ++ LK EP++ L L TPL +I + Q+
Sbjct: 221 PLAVLPEYDEAGNIVSYLHPYEFELDRFEPLKEALKEVEPEEPLKLESTPLDIIDKESQL 280
Query: 259 TQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLT 318
L+ ELK +E+AIDLE+H+YR+YQG+TCLMQISTR KDYI+DTL LRE+L +LNEV T
Sbjct: 281 PGLLKELKAAKELAIDLEHHSYRTYQGFTCLMQISTRSKDYIIDTLALREELHILNEVFT 340
Query: 319 DKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK 378
+ +VKV HGA SDI+WLQ+D LY+V MFDT +A K L R L +LLKHYC++D+DK
Sbjct: 341 NPKVVKVLHGAISDIEWLQRDLSLYIVNMFDTGEAAKVLEFSRIGLQFLLKHYCNIDTDK 400
Query: 379 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNIC 438
+QL DWR RP+P I+YAR DTHYLLY+YD M+ +L A + + + + S +C
Sbjct: 401 AYQLADWRIRPIPHNFIEYARKDTHYLLYIYDRMRNELIAKG---ASFLPTVYNKSTYMC 457
Query: 439 KLKYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHML 497
K +Y KPV NE+ MNI+ RS + + +Q YA RE+ WRD++AR +DES GYVLP HM
Sbjct: 458 KQRYVKPVINEDAVMNIYRRSKHVFDQRQMYAFREILYWRDKLARQEDESPGYVLPQHMA 517
Query: 498 LQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
L +A +PR++QGI ACC PVP V++H+ IH IILKAR SL K V
Sbjct: 518 LDIASKLPREMQGIIACCTPVPSLVRQHLHTIHQIILKAREISLNKSV 565
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 48/301 (15%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 626
H + +Q YA RE+ WRD++AR +DES GYVLP HM L +A +PR++QGI ACC PVP
Sbjct: 480 HVFDQRQMYAFREILYWRDKLARQEDESPGYVLPQHMALDIASKLPREMQGIIACCTPVP 539
Query: 627 QTVKEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVS--------PPHDSM 678
V++H+ IH IILKAR L K V +++ K + + Q + PHDS
Sbjct: 540 SLVRQHLHTIHQIILKAREISLNKSVAA---AIEHQKDTRHKMQSTFDLNNPLFCPHDSS 596
Query: 679 DCLNYK-GLPPVF--------------------PNNIICAPSNTH---------LSSYDP 708
++ + LP + P+ + S T L S
Sbjct: 597 QGVHLETNLPTLLNSTSKIGVCEKVLAGMLKEQPDAGVFEESKTRTLDEKGRLILDSNMS 656
Query: 709 QDKKIAQ-IGLFFEDKMKIGS---NKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDK 764
+D K+A I ++ K G+ N + + +F TPY+R L++ Q + +
Sbjct: 657 EDTKMANFIEAHYQAKQLDGNQSLNGSIYLSYQDRKFNTPYERHLET--CRNRYQNEEPE 714
Query: 765 ENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEE 824
E + K++ + Q +P E+ ++ EPV+ ++ + +++ E E+E ++K+++ +
Sbjct: 715 EEEQDKRLKPVVKQETDKPVESTEVKSEPVMDSKLPLKAQKRQE-EREAKRKLVQTESAD 773
Query: 825 K 825
K
Sbjct: 774 K 774
>gi|347967581|ref|XP_003436085.1| AGAP002300-PB [Anopheles gambiae str. PEST]
gi|333468394|gb|EGK96928.1| AGAP002300-PB [Anopheles gambiae str. PEST]
Length = 988
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/518 (43%), Positives = 332/518 (64%), Gaps = 14/518 (2%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISK 84
+ + +I+ K A + PS L A P +I + +++V+ ++ ++L+ Q +
Sbjct: 44 MCEQGQNAIIAGMKAANAMPSGRSRDLYAAHPEFIKIMDTRANQVLHIIANILQLQGVQG 103
Query: 85 SMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQPKIVKESWNKNAKA 142
++ + + +++ + ND +LE I++ +D MAG + P+VL V+ +
Sbjct: 104 NILHRDPDERLEMIHDFNDNILERIHSNLDEMAGIRKVVPTVLVQSE--VQVPVTPRYRL 161
Query: 143 SNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL 202
S W E + A I RPQ++FKV VDNS F PK+++KP++LKPL
Sbjct: 162 SGAWNERQKGEPVKATLIT----GTNIARPQVKFKVPVDNSRLNPFVPKIRDKPHSLKPL 217
Query: 203 AILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQ 260
A+L E +A I S+ HPYE+ELD + P + + P++ +PL TPLM + + Q+ +
Sbjct: 218 AVLPEYDEAGNIVSYLHPYEFELDRFQPAKHVFERTTPQEPVPLERTPLMYVDQESQLAE 277
Query: 261 LVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK 320
LV EL+ +EIAIDLE+H+YRSYQG+TCLMQ+STR KDYIVD L LR++L VLNEV TD
Sbjct: 278 LVRELQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDYIVDALALRDELHVLNEVFTDP 337
Query: 321 NIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTF 380
+KV HG+ SDI+WLQ+D GLY+V MFDT +A + L R L +LLKHYC++D+DK F
Sbjct: 338 KKLKVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQFSRIGLQFLLKHYCNIDTDKAF 397
Query: 381 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKL 440
QL DWR RP+PE I+YAR DTHYLLY+YD M+ +L ++L+ + + S +CK
Sbjct: 398 QLADWRIRPIPENFIEYARKDTHYLLYIYDRMRNELLEKG---ESLLQTVYDKSTFMCKQ 454
Query: 441 KYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 499
+Y+KP NE+ MNI+ RS + +++Q YA RE+ WRD+IAR +DES GYVLP HM L
Sbjct: 455 RYQKPTMNEDTVMNIYRRSRYVFDHRQMYAFREVLYWRDQIARLEDESPGYVLPQHMALD 514
Query: 500 MAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+A +PR++QGI ACC PVP V++H+ +H I+LKAR
Sbjct: 515 IASKLPREMQGIIACCTPVPSLVRQHLHALHKIVLKAR 552
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 111/460 (24%), Positives = 195/460 (42%), Gaps = 113/460 (24%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q YA RE+ WRD+IAR +DES GYVLP HM L +A +PR++QGI ACC PVP V
Sbjct: 478 DHRQMYAFREVLYWRDQIARLEDESPGYVLPQHMALDIASKLPREMQGIIACCTPVPSLV 537
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQ------------------------PSLDGMKKK 665
++H+ +H I+LKAR P + Q P D
Sbjct: 538 RQHLHALHKIVLKARELPAVAGGNQAQTKEQHADTRYKMHSAFDFDNPLVCPHDDAGHGT 597
Query: 666 KQQQQVSPPHDSMDCLN----YKGLPPVFPN--------NIICAP--------SNTHLSS 705
+ P D N K +P + N ++ P + LS
Sbjct: 598 DDAGATNRPTLLGDLTNRMEATKPVPAINANLLKDVPDMGVLAVPKIRTIDTRGHVGLSE 657
Query: 706 YDPQDKKIAQIGLFF-----EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQE 760
D + K+ ++ +D+ + ++ + K + ++F TP++R+L++ + ++E
Sbjct: 658 SDVSEAKLTKLLALHTNHPQQDQSEDAGSENKASKYEQNKFNTPFERYLETCRL-RQLKE 716
Query: 761 KVDKENAEQKKIDALTPQVKTEPEENVKITQEP--------VVLKQIKSEEK-------- 804
+ D+ +Q+ A + Q P +V Q+P VV+K+ S++
Sbjct: 717 RNDEALQKQQNTGATSKQSTETPSADVLTLQQPNPPAPATVVVVKEEPSQKAPPQLLTQN 776
Query: 805 --EKVEMEKEKRKKILRER---------EEEKEEQPATKK-----IKVEKPEESNEKTKQ 848
+++E KE++ E+ E+ + P +K I V ++ E+ Q
Sbjct: 777 QLKRLEEAKERKSIAAGEKLCFNGTVIMEKPANQTPGKRKSFPMEINVSSSSDAIEQDLQ 836
Query: 849 H---------KIKSEP---------KENDSSK--EKPEESNEKTKRHKIKSEPKENDSSK 888
K+ EP NDS+ EKP +S + +R + K++ SS
Sbjct: 837 SVAGEQKPADKLHMEPFKDQSKPTGPHNDSANWGEKPAKSKKDKQRQRNKAK-----SSV 891
Query: 889 GKSGGTIST------VDFSKVNYNKYMAKPGKSNQKKKGK 922
G+ GG S+ D++ V+++++ +KGK
Sbjct: 892 GQGGGRQSSNKPVVPFDYNNVDFSRFQGGSKPLAGPRKGK 931
>gi|347967577|ref|XP_312669.5| AGAP002300-PA [Anopheles gambiae str. PEST]
gi|333468393|gb|EAA07463.5| AGAP002300-PA [Anopheles gambiae str. PEST]
Length = 992
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/511 (44%), Positives = 330/511 (64%), Gaps = 14/511 (2%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYL 91
+I+ K A + PS L A P +I + +++V+ ++ ++L+ Q + ++
Sbjct: 55 AIIAGMKAANAMPSGRSRDLYAAHPEFIKIMDTRANQVLHIIANILQLQGVQGNILHRDP 114
Query: 92 EGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQPKIVKESWNKNAKASNVWQEV 149
+ + +++ + ND +LE I++ +D MAG + P+VL V+ + S W E
Sbjct: 115 DERLEMIHDFNDNILERIHSNLDEMAGIRKVVPTVLVQSE--VQVPVTPRYRLSGAWNER 172
Query: 150 HDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY 209
+ A I RPQ++FKV VDNS F PK+++KP++LKPLA+L E
Sbjct: 173 QKGEPVKATLIT----GTNIARPQVKFKVPVDNSRLNPFVPKIRDKPHSLKPLAVLPEYD 228
Query: 210 DA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQ 267
+A I S+ HPYE+ELD + P + + P++ +PL TPLM + + Q+ +LV EL+
Sbjct: 229 EAGNIVSYLHPYEFELDRFQPAKHVFERTTPQEPVPLERTPLMYVDQESQLAELVRELQA 288
Query: 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 327
+EIAIDLE+H+YRSYQG+TCLMQ+STR KDYIVD L LR++L VLNEV TD +KV H
Sbjct: 289 AKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDYIVDALALRDELHVLNEVFTDPKKLKVLH 348
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
G+ SDI+WLQ+D GLY+V MFDT +A + L R L +LLKHYC++D+DK FQL DWR
Sbjct: 349 GSVSDIEWLQRDLGLYLVNMFDTGEAARVLQFSRIGLQFLLKHYCNIDTDKAFQLADWRI 408
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVF 447
RP+PE I+YAR DTHYLLY+YD M+ +L ++L+ + + S +CK +Y+KP
Sbjct: 409 RPIPENFIEYARKDTHYLLYIYDRMRNELLEKG---ESLLQTVYDKSTFMCKQRYQKPTM 465
Query: 448 NEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
NE+ MNI+ RS + +++Q YA RE+ WRD+IAR +DES GYVLP HM L +A +PR
Sbjct: 466 NEDTVMNIYRRSRYVFDHRQMYAFREVLYWRDQIARLEDESPGYVLPQHMALDIASKLPR 525
Query: 507 DIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
++QGI ACC PVP V++H+ +H I+LKAR
Sbjct: 526 EMQGIIACCTPVPSLVRQHLHALHKIVLKAR 556
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 111/460 (24%), Positives = 195/460 (42%), Gaps = 113/460 (24%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q YA RE+ WRD+IAR +DES GYVLP HM L +A +PR++QGI ACC PVP V
Sbjct: 482 DHRQMYAFREVLYWRDQIARLEDESPGYVLPQHMALDIASKLPREMQGIIACCTPVPSLV 541
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQ------------------------PSLDGMKKK 665
++H+ +H I+LKAR P + Q P D
Sbjct: 542 RQHLHALHKIVLKARELPAVAGGNQAQTKEQHADTRYKMHSAFDFDNPLVCPHDDAGHGT 601
Query: 666 KQQQQVSPPHDSMDCLN----YKGLPPVFPN--------NIICAP--------SNTHLSS 705
+ P D N K +P + N ++ P + LS
Sbjct: 602 DDAGATNRPTLLGDLTNRMEATKPVPAINANLLKDVPDMGVLAVPKIRTIDTRGHVGLSE 661
Query: 706 YDPQDKKIAQIGLFF-----EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQE 760
D + K+ ++ +D+ + ++ + K + ++F TP++R+L++ + ++E
Sbjct: 662 SDVSEAKLTKLLALHTNHPQQDQSEDAGSENKASKYEQNKFNTPFERYLETCRL-RQLKE 720
Query: 761 KVDKENAEQKKIDALTPQVKTEPEENVKITQEP--------VVLKQIKSEEK-------- 804
+ D+ +Q+ A + Q P +V Q+P VV+K+ S++
Sbjct: 721 RNDEALQKQQNTGATSKQSTETPSADVLTLQQPNPPAPATVVVVKEEPSQKAPPQLLTQN 780
Query: 805 --EKVEMEKEKRKKILRER---------EEEKEEQPATKK-----IKVEKPEESNEKTKQ 848
+++E KE++ E+ E+ + P +K I V ++ E+ Q
Sbjct: 781 QLKRLEEAKERKSIAAGEKLCFNGTVIMEKPANQTPGKRKSFPMEINVSSSSDAIEQDLQ 840
Query: 849 H---------KIKSEP---------KENDSSK--EKPEESNEKTKRHKIKSEPKENDSSK 888
K+ EP NDS+ EKP +S + +R + K++ SS
Sbjct: 841 SVAGEQKPADKLHMEPFKDQSKPTGPHNDSANWGEKPAKSKKDKQRQRNKAK-----SSV 895
Query: 889 GKSGGTIST------VDFSKVNYNKYMAKPGKSNQKKKGK 922
G+ GG S+ D++ V+++++ +KGK
Sbjct: 896 GQGGGRQSSNKPVVPFDYNNVDFSRFQGGSKPLAGPRKGK 935
>gi|195451328|ref|XP_002072866.1| GK13832 [Drosophila willistoni]
gi|194168951|gb|EDW83852.1| GK13832 [Drosophila willistoni]
Length = 913
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/536 (41%), Positives = 341/536 (63%), Gaps = 23/536 (4%)
Query: 29 AYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSK 88
A++++V T+ +FP SL ++ P Y + S +V+ LV ++L++Q I ++K
Sbjct: 50 AFRNVVSATRCCNAFPQGTARSLYLSYPGYAKIIDDLSQRVVGLVGNVLQSQQIKGDINK 109
Query: 89 LYLEGQKDILTEANDKLLESINTRIDVMAGTK-TPSVL------------PSQPKIVKES 135
++ Q +++ E ND + E I T +D+ +G + P ++ + P ES
Sbjct: 110 RTMDEQFEMVQECNDIVFERITTNLDIKSGLRRNPQMMLETQVDVLNPQASASPTSGTES 169
Query: 136 WNKNAKASNVWQEVHDNKKK---SANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
+ + + W + SA F A I RPQLQFK +DN+ + F P+L
Sbjct: 170 PSSTSWRAGSWNRSPATAPRGLVSARLFT----AKNIMRPQLQFKELIDNNAQNPFLPRL 225
Query: 193 KEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
+EKPN+LKPLA+L E +A I+S+ HPYE+EL + P + ++ + P+ + +T LM
Sbjct: 226 REKPNSLKPLALLPEYNEAGNIQSYLHPYEFELLKFEPPQGQMQTQSPELPASMGNTELM 285
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++ E++ Q V EL + +IAID+E+H+YR++ G TCL+Q+ST KDYI DTL LRED+
Sbjct: 286 LVDNLEKLQQAVKELSEASQIAIDVEHHSYRTFMGITCLVQMSTCSKDYIFDTLVLREDM 345
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
++LN V+TD +K+ HGAD DI+WLQ+D LY+V MFDTH+A K L M R SLA+LLKH
Sbjct: 346 QLLNLVMTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAFLLKH 405
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
Y D+D DK+ QL DWR RPLP+ I YAR DTHYL+YVY C+ DL +G Q ++ S
Sbjct: 406 YVDLDVDKSLQLADWRMRPLPQELINYARQDTHYLIYVYQCLTNDLLKLDNGHQQILRSV 465
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ S +C+ +Y KP + ++++ R + + +N+Q +ALR L++WRD AR +DES G
Sbjct: 466 YQMSTEVCRKRYTKPHIGPDSHLDLVRKTKQIFDNRQLHALRGLFEWRDTTARQEDESYG 525
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
YV+PNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+LKAR Q L KP+
Sbjct: 526 YVMPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKAREQPLVKPI 581
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q +ALR L++WRD AR +DES GYV+PNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 499 DNRQLHALRGLFEWRDTTARQEDESYGYVMPNHMMLQIAESLPREMQGILACCNPIPPLV 558
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++ + +H I+LKAR QPL KP+
Sbjct: 559 RQQLHTLHQIVLKAREQPLVKPI 581
>gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta]
gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta]
Length = 900
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/548 (42%), Positives = 340/548 (62%), Gaps = 25/548 (4%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNI 82
+ +K+++ TK A +FP +L ++ P Y + S +V+ L+ ++L+ ++I
Sbjct: 32 EAFTNQGFKNVIVATKAANAFPQGAARALYLSYPGYARVMDDLSQRVVALIGNVLQAKDI 91
Query: 83 SKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK-------------TPSVLPSQP 129
+ K +E Q +++ E ND L E I T +D+ +G + ++P
Sbjct: 92 KGDVRKRQVEEQFEMVQECNDILFERITTNLDIKSGLRRNPQQVVEAQVDVISGSTSTEP 151
Query: 130 KIVKESWNKNAKASNVWQEVHDNKKK---SANWFMLNKGAVEIERPQLQFKVKVDNSYEQ 186
+V KA + W + ++ SA F A I RPQ QFK VDNS +
Sbjct: 152 AVVSPQTQGTPKAGS-WNKTTGTPQRNMVSARLFT----AKNIVRPQTQFKEPVDNSAQN 206
Query: 187 LFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPL 244
F P+LKEKPN+LKPLA+L E D I S+ HPYE+EL + P D L+ ++P +
Sbjct: 207 PFVPRLKEKPNSLKPLALLPEYDDTGNIHSYLHPYEFELLKFQPLADQLQKQKPVLPALM 266
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
+DT LM++ E++ Q + EL+Q +IAID+E+H+YR++ G TCL+Q+STR KDYI DTL
Sbjct: 267 ADTELMVVDTVEKLQQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTL 326
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
LRED+ +LN VLTD +K+ HGAD DI+WLQ+D LY+V MFDTH+A K L + R SL
Sbjct: 327 ILREDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNLARLSL 386
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
AYLLK+Y D+D DK+ QL DWR RPLP+ + YAR DTH+L+YVY+ M DL
Sbjct: 387 AYLLKYYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDL-LQQQTDT 445
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARD 483
L+ S + S ++CK +Y KP E ++++ R + +N+Q YALR +++WRD AR
Sbjct: 446 GLLASVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARL 505
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
+DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+LKAR Q L K
Sbjct: 506 EDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKARDQPLVK 565
Query: 544 PVEKLQPS 551
P+ + Q S
Sbjct: 566 PILEAQSS 573
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 173/362 (47%), Gaps = 82/362 (22%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 485 DNRQLYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 544
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPV 689
++ + +H I+LKAR QPL KP+ + Q S QVS P + D
Sbjct: 545 RQQLHTLHQIVLKARDQPLVKPILEAQSST----------QVSLPPSTKD---------- 584
Query: 690 FPNNIICAPSNTHLSSYD------------------PQDKKIAQIGL--------FFEDK 723
F + + C +HL P++K++A L F+ +
Sbjct: 585 FSSKLYCPHDFSHLEEIRDDLPTLLKRSSTSGKLEMPREKEVADESLPIAAPAMALFQKQ 644
Query: 724 MKIGSNKYQK---IKLKTSRFETPYQRFLKSKEYA---KAIQEKVDKENAEQKKIDALTP 777
K + Q+ ++ ++ PY+R+L KA Q ++ +++++ P
Sbjct: 645 SKPTQEEEQRWAHLRKESQTLRMPYKRYLAILPLMVQLKADQLARERSELQKRQLCLAAP 704
Query: 778 QVKTEPEENVKITQEPVVLKQIKSEEKEKVEM----EKEKRKKILREREEEKEEQPATKK 833
V E+N+K+ + +E + V E+ KRK L + + ++QP T K
Sbjct: 705 TV----EQNIKLE------AHVSKKEDDVVYSVPLKEQLKRKHPLTNGKTDADQQPTTSK 754
Query: 834 -------------IKVEKPEESNEKTKQH--KIKSEPKENDSSKEKPEESNEKTKRHKIK 878
+K+E EE + T + ++ P E ++ E+P+ S +TK K K
Sbjct: 755 RLRKDENTQPKPPVKIEPVEEVQQATGESDDEVVEVPIERQTT-ERPKPSPAQTKWQKKK 813
Query: 879 SE 880
++
Sbjct: 814 NQ 815
>gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi]
gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi]
Length = 911
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/574 (39%), Positives = 353/574 (61%), Gaps = 31/574 (5%)
Query: 29 AYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSK 88
A++++V T++ +FP + + ++ P Y + S +V+ L++ +L+ + ++ + +
Sbjct: 44 AFRNVVAATRSCNAFPQGNARDVYLSYPGYARMLEEQSQRVLGLINKVLQAEKVAGDIRR 103
Query: 89 LYLEGQKDILTEANDKLLESINTRIDVMAGTK----------------TPSVLPSQPKIV 132
E + +++ E ND L E I T +D+ +G + P+ I
Sbjct: 104 RQGEEKLELVQECNDILFERITTNLDIKSGQRRGNQQMVVETQVDVQSASKATPTATTIT 163
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNK---GAVEIERPQLQFKVKVDNSYEQLFE 189
ES A + W + + + + M++ A I RPQ++FKV VDNS F+
Sbjct: 164 NESATPRAGS---WNRISSSTMGTPSRSMVSARLFTAPNIMRPQMRFKVPVDNSATNPFQ 220
Query: 190 PKLKEKPNALKPLAILLE--KYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+L EKPN+LKPLA+L E + D I SF HPYE+EL + P ++ L+ + P+ P T
Sbjct: 221 PRLTEKPNSLKPLALLPEYDEADNIVSFLHPYEFELLKFEPAKEQLQKQNPQMPAPPEKT 280
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
LM++ E++ Q ++EL+ +IAID+E+H+YR++ G TCL+Q+STR KDYI DTL LR
Sbjct: 281 ELMLVDSVEKLQQALAELRLAHQIAIDVEHHSYRTFMGITCLVQMSTRTKDYIFDTLILR 340
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
+D+ +LN VLTD ++K+ HG D DI+WLQ+D LY+V MFDTH+A K L + R SLA+L
Sbjct: 341 DDMHILNLVLTDPKVLKILHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALNLARLSLAFL 400
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
LK Y D+D DK+ QL DWR RPLP+ I YAR DTHYL+Y+Y+ + DL + G+ + +
Sbjct: 401 LKFYLDMDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYIYERLVNDLLQSEQGQSHSL 460
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDE 486
+ S +ICK +Y KP + ++++ R + +N+Q YALR ++ WRD AR +DE
Sbjct: 461 RMVYQQSTDICKKRYTKPYIGPDSHLDLVRKTKRSFDNRQLYALRGIFTWRDATARQEDE 520
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
S GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+L+AR QSL KP+
Sbjct: 521 SYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLRAREQSLIKPIL 580
Query: 547 KLQPSLDG------MKKKQQQQVSPPHDSNNQQK 574
+ G + K +++ PHD ++Q++
Sbjct: 581 EASCGPQGSVKLAPITKDFSSKLNCPHDFSHQEE 614
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 66/83 (79%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR ++ WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 497 DNRQLYALRGIFTWRDATARQEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 556
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++ + +H I+L+AR Q L KP+
Sbjct: 557 RQQLHTLHQIVLRAREQSLIKPI 579
>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
Length = 832
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/567 (42%), Positives = 350/567 (61%), Gaps = 69/567 (12%)
Query: 25 LVQNAYKSIVKCTKTAQS-FPSTHENSLLIASPNYISGVAG-------TSDKVMTLVDSL 76
VQ + S+++ TK++++ PS ++ +Y S AG + +++ +++L
Sbjct: 23 FVQRSLSSVLRATKSSRTALPSPGDDF------DYYSSFAGFREFAATQAHRIVNNMNAL 76
Query: 77 LKTQNISKSMSK----LYLEGQKDILTEANDKLLESINTRIDVMAGT---KTPSVLPS-- 127
L+ + + + + + L+ + D + EAND +LE + + +D +G K P VLP+
Sbjct: 77 LRHEGVEGEVLRGKKSVELDDRLDTVVEANDIILERVGSLLDQASGVVKQKEP-VLPTGT 135
Query: 128 -QPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQ 186
Q + SWNK +++ + +KS W +L+ A IERPQL+FK K+DNS
Sbjct: 136 PQTGTLVSSWNKKSRSKS-------GSEKSVTWRLLH--ARNIERPQLKFKDKIDNS-NT 185
Query: 187 LFEPKLKEKPNALKPLAILLEKYD-------------AIESF----------------CH 217
F P ++ KPNA +PL KYD A+ F H
Sbjct: 186 PFIPIIRHKPNAHRPLP----KYDQQKRHPEDLDVPAALADFIHRQREVHQGQPADLTAH 241
Query: 218 PYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEY 277
PY+YEL+ + P L ++P+ + P+ TPL ++T E++ + +L E A+DLE+
Sbjct: 242 PYQYELEHFQPTPQQLLKKQPQPSKPIDATPLTLVTTLEELMDMNDKLTMCSEFAVDLEH 301
Query: 278 HNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 337
H+YRS+QG+TCLMQ+STRD DYIVDTL LR DL VLN+ TD +VKVFHGAD DI+WLQ
Sbjct: 302 HSYRSFQGFTCLMQVSTRDHDYIVDTLALRADLHVLNDTFTDPKVVKVFHGADMDIQWLQ 361
Query: 338 KDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQY 397
+DFG+YVV MFDT QA L +PR SLAYLLK YCDV+ DK +QL DWR RPLP QY
Sbjct: 362 RDFGVYVVNMFDTGQASHVLGLPRHSLAYLLKTYCDVEPDKKYQLADWRIRPLPSEMTQY 421
Query: 398 ARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR 457
AR DTHYLL++YDCM+ +L + + NL+ +T SR +C +Y+K ++ E+ Y+N+
Sbjct: 422 AREDTHYLLHIYDCMRSELLDRGNNEANLLHNTLERSRQVCLQRYQKLLYTEDSYLNLLN 481
Query: 458 SH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
H N+QQ +A+R +Y+WRD IAR +DESTGYVLPNHMLL +A+++P+ IQG+FACCN
Sbjct: 482 KHKKTFNSQQLHAVRLVYRWRDTIARQEDESTGYVLPNHMLLVLAETLPKQIQGVFACCN 541
Query: 517 PVPQTVKEHVLDIHAIILKARLQSLTK 543
PVP V++H+ D+H ++++AR L K
Sbjct: 542 PVPPLVRQHIEDVHRLLVQARDVPLVK 568
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 68/81 (83%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ +A+R +Y+WRD IAR +DESTGYVLPNHMLL +A+++P+ IQG+FACCNPVP V
Sbjct: 488 NSQQLHAVRLVYRWRDTIARQEDESTGYVLPNHMLLVLAETLPKQIQGVFACCNPVPPLV 547
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++H+ D+H ++++AR PL K
Sbjct: 548 RQHIEDVHRLLVQARDVPLVK 568
>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
Length = 885
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/531 (44%), Positives = 340/531 (64%), Gaps = 18/531 (3%)
Query: 21 TFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ 80
TF+ +Q+A+ ++ KTA + P+ + P++ ++++ + S++K
Sbjct: 43 TFEDYIQDAFDTMRTGIKTANNLPAGDNFNYYACFPSFNDARQKDKERILATMKSIMKLV 102
Query: 81 NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGT-KTPSV---LPSQPK-IVKES 135
S ++ ++ + D+L E ND+LL+ N +D +G + P V + PK +V +
Sbjct: 103 GGSGNIQNRDIDEKFDLLLETNDQLLDQANILMDEESGILRNPQVELVVSQMPKPVVNGT 162
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
WN +V DN +K +L G I+RPQL FK K+DNS + + P++K+K
Sbjct: 163 WNIKT------NQVSDNSEKVR---LL--GGKNIQRPQLMFKDKIDNS-SKPWMPRIKDK 210
Query: 196 PNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEP 255
PN+LKPLA+ +E+ + E F HPYE+ELD + E LK P + L DT + I +P
Sbjct: 211 PNSLKPLALHVEEDEHGEVFNHPYEFELDKFETLECQLKKRIPVEYKLLDDTNFVFIDKP 270
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
+ L+ +L+ +EIA+DLE+H+YR++QG TCLMQIST DY++DTL LR +L LNE
Sbjct: 271 ADINILLEDLRNHKEIAVDLEHHSYRTFQGITCLMQISTIQTDYLIDTLSLRSELYQLNE 330
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 375
+ T +I+KVFHGAD DI WLQ+D LYVV MFDTHQA K L +P SLAYLL YC +D
Sbjct: 331 IFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLNLPYLSLAYLLNKYCGID 390
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 435
+K FQL DWR RPLP ++YAR DTHYLLYV D +K +L AA+GK N++ + + S
Sbjct: 391 PNKHFQLADWRIRPLPLELMKYAREDTHYLLYVKDMLKNELIDAANGKSNILKAVYDQST 450
Query: 436 NICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
ICK Y KP++ EE MN++R S NN+Q YAL EL++WRD AR +D+S GY+LPN
Sbjct: 451 EICKRTYVKPIWTEESCMNMYRKSQKSFNNKQIYALLELHRWRDLTARQEDDSIGYILPN 510
Query: 495 HMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
HMLL +A+++PR++QGI ACCNP+P V++++L IH I+LKAR Q L K +
Sbjct: 511 HMLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKIVLKAREQPLVKSI 561
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 68/83 (81%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YAL EL++WRD AR +D+S GY+LPNHMLL +A+++PR++QGI ACCNP+P V
Sbjct: 479 NNKQIYALLELHRWRDLTARQEDDSIGYILPNHMLLNIAETLPREMQGILACCNPIPPLV 538
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++++L IH I+LKAR QPL K +
Sbjct: 539 RQNLLKIHKIVLKAREQPLVKSI 561
>gi|427793373|gb|JAA62138.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6, partial [Rhipicephalus pulchellus]
Length = 911
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/521 (45%), Positives = 331/521 (63%), Gaps = 24/521 (4%)
Query: 26 VQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDK-VMTLVDSLLKTQNISK 84
++ +S+V+ TK A P E+ +S + V K V+ L+ SL Q
Sbjct: 57 AESLLRSVVQATKAANDLPGAGEDFEYFSSFSSFRQVMLAEGKSVLKLMSSLANHQVGKG 116
Query: 85 SMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS-----VLPSQPKIVKESWNKN 139
L LE + D+L + ND +LE + +D G K + V S + + SWNK
Sbjct: 117 KFEGLDLEEKFDLLADINDTVLERVGNNLDEADGVKKKADDVVLVTVSANRPIHTSWNKK 176
Query: 140 AKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNAL 199
N K+A + +L A + RPQL FK KVDNS F P L++KP++L
Sbjct: 177 ------------NLTKAAKFHLL--AAKNVTRPQLNFKEKVDNS-NTPFVPILRDKPHSL 221
Query: 200 KPLAILLEK-YDAIESFCHPYEYELDLYVPKEDFLKC-EEPKQALPLSDTPLMMITEPEQ 257
KPLAIL E D ES+ HPYE+E++ + P LK E + PL +TP ++ +Q
Sbjct: 222 KPLAILPESNSDGQESYGHPYEWEIEHFEPSPTQLKAPSEERLPPPLEETPCTLVETVDQ 281
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ ++ L ++ EIA+DLE+H+YRS+QG+TCLMQIS+R +DYIVDTL LR +L++LNEV
Sbjct: 282 LKEMCEALSKETEIAVDLEHHSYRSFQGFTCLMQISSRTQDYIVDTLALRHELQMLNEVF 341
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD 377
D I+KVFHGAD D+ WLQ+DFGLY+VG+FDT QA K L + SLA+LLKHYC +++D
Sbjct: 342 ADPKILKVFHGADMDVLWLQRDFGLYLVGLFDTGQAAKVLGLAHFSLAFLLKHYCQIEAD 401
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNI 437
K FQL DWR RPLP + YA++DTHYLLY+ DCMK DL+ ++ NL+ S F S+ +
Sbjct: 402 KQFQLADWRIRPLPPEMVSYAQSDTHYLLYIMDCMKRDLADRSNENDNLLRSVFDRSKQV 461
Query: 438 CKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
YEKP ++E+ YM ++R S N++Q +ALR LY WRDR AR++DESTGYVLPNHM
Sbjct: 462 ALRCYEKPSYHEQSYMELYRKSRKTFNSRQLHALRHLYSWRDRTARNEDESTGYVLPNHM 521
Query: 497 LLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+L++++ +PR+ QGI ACCNP P V++++ ++H IILKAR
Sbjct: 522 ILEISEILPREQQGIVACCNPCPPLVRQNLNELHTIILKAR 562
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 66/81 (81%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q +ALR LY WRDR AR++DESTGYVLPNHM+L++++ +PR+ QGI ACCNP P V
Sbjct: 488 NSRQLHALRHLYSWRDRTARNEDESTGYVLPNHMILEISEILPREQQGIVACCNPCPPLV 547
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++++ ++H IILKAR PL +
Sbjct: 548 RQNLNELHTIILKAREVPLNE 568
>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
Length = 1189
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/566 (42%), Positives = 351/566 (62%), Gaps = 29/566 (5%)
Query: 18 LSKTFDVLVQNAYKSIVKCTKTAQSFPSTHE-NSLLIASPNYISGVAGTSDKVMTLVDSL 76
+++TFD Q AY +++ K A + P+T N + P+ +++ + +
Sbjct: 6 VNETFDNRNQEAYDAMIAGIKAANNLPATDNFNYYVCLKPSLNEARNKDLRRILATMQMI 65
Query: 77 LKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGT-KTPSV---LPSQPK-I 131
++T S ++ ++ + D+L E ND LL+ N +D +G + P V + PK +
Sbjct: 66 IRTTGGSSNIESADVDDKFDLLLETNDHLLDQANILMDEESGILRNPQVELVVSQMPKPL 125
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ + + + DN K + G I+RPQL FK K+DNS + + P+
Sbjct: 126 INGSWNRADRTN----KSSDNSDK-----IRLLGGKNIQRPQLMFKDKIDNS-SKPWMPR 175
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMM 251
+KEKPN+LKPLA+ +E+ + E F HPYE+ELD + E LK P Q L T +
Sbjct: 176 IKEKPNSLKPLALYVEEGEHGEVFNHPYEFELDKFDTPECQLKKSVPVQYKSLESTEFKL 235
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I +P ++ L+ +LK Q+EIA+DLE+H+YR++QG TCLMQIST + DY++DTL LR +L
Sbjct: 236 IEKPSEIKILLEDLKNQKEIAVDLEHHSYRTFQGITCLMQISTVNTDYLIDTLALRSELH 295
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHY 371
LNE+ T I+K+FHGAD DI WLQ+D LYVV MFDTHQA K L +P SLAYLL Y
Sbjct: 296 QLNEIFTKPTILKIFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLNLPYLSLAYLLNKY 355
Query: 372 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
C ++ +K FQL DWR RPLPE ++YAR DTHYLL++ D +K +L A+GK N++ + +
Sbjct: 356 CGINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIETANGKSNILKAVY 415
Query: 432 TNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
++CK Y K ++ EE MN++R S NN+Q YAL EL+KWRD AR++D+S GY
Sbjct: 416 DRCTDLCKRTYVKSIWTEESCMNMYRKSQKSFNNKQMYALLELHKWRDITAREEDDSIGY 475
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
VLPNHMLL +A+++PR++QGI ACCNP+P V+++VL +H I+LKAR QSL + P
Sbjct: 476 VLPNHMLLNIAETLPREMQGILACCNPIPPLVRQNVLKLHKIVLKAREQSLVMSI----P 531
Query: 551 SLDGMKKKQQQQ--------VSPPHD 568
D ++ QQ + PHD
Sbjct: 532 EQDIRQRPTQQNHVVDSGASLYTPHD 557
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 11/114 (9%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YAL EL+KWRD AR++D+S GYVLPNHMLL +A+++PR++QGI ACCNP+P V
Sbjct: 448 NNKQMYALLELHKWRDITAREEDDSIGYVLPNHMLLNIAETLPREMQGILACCNPIPPLV 507
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVS-------PPHD 676
+++VL +H I+LKAR Q L + P D ++ QQ V PHD
Sbjct: 508 RQNVLKLHKIVLKAREQSLVMSI----PEQDIRQRPTQQNHVVDSGASLYTPHD 557
>gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster]
gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster]
Length = 900
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/548 (42%), Positives = 342/548 (62%), Gaps = 23/548 (4%)
Query: 16 KELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDS 75
K S+ + +K+ + TK A +FP +L ++ P Y + + +V+ L+ +
Sbjct: 25 KSASEDVEAFTNKGFKNAIAATKAANAFPQGTARALYLSYPGYARVMEDLTQRVVALIGN 84
Query: 76 LLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQPKIVK 133
+L +++I + K E Q +++ E ND L E I T +D+ G + T V+ +Q ++
Sbjct: 85 VLHSKDIKGDIKKRQPEEQFEMVQECNDVLFERITTNLDIKGGLRRNTQQVVEAQVDVMS 144
Query: 134 ESWN----------KNAKASNVWQEVHDNKKKS---ANWFMLNKGAVEIERPQLQFKVKV 180
S + + + W ++S A F A I RPQ QF+ V
Sbjct: 145 SSTSIEPAVASPQTQGTPKAGSWNRTTGTPQRSMVSARLFT----AKNIVRPQTQFREPV 200
Query: 181 DNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEP 238
DNS + F P+LKEKPN+LKPLA+L E DA ++S+ HPYE+EL + P E+ + ++P
Sbjct: 201 DNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNVQSYLHPYEFELLKFQPPEEQFQKQKP 260
Query: 239 KQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 298
+++T LM++ E++ Q + EL+Q +IAID+E+H+YR++ G TCL+Q+STR KD
Sbjct: 261 VLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD 320
Query: 299 YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP 358
YI DTL LR+D+ +LN VLTD +K+ HGAD DI+WLQ+D LY+V MFDTH+A K L
Sbjct: 321 YIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN 380
Query: 359 MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418
M R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+YVY M DL
Sbjct: 381 MARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDL-L 439
Query: 419 AAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWR 477
H + L+ S + S ++CK +Y KP E ++++ R + +N+Q YALR +++WR
Sbjct: 440 QQHAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWR 499
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+LKAR
Sbjct: 500 DATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKAR 559
Query: 538 LQSLTKPV 545
Q L KP+
Sbjct: 560 DQPLVKPI 567
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 51/382 (13%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 485 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 544
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGM---KKKKQQQQVSPPHDSMDCLNYK-G 685
++ + +H I+LKAR QPL KP+ + S K ++ PHD +
Sbjct: 545 RQQLHTLHQIVLKARDQPLVKPILEAHSSTQAALPPSTKDFSSKLYCPHDFSQLEEIRDD 604
Query: 686 LPPVFPNNIICA----PSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQK---IKLKT 738
LP + N P+ ++ DP A FE + K + Q+ ++ ++
Sbjct: 605 LPTLLKRNSTTGKLEVPNKEEVAKVDP--TLAAPAMALFEKQSKPTQEEEQRWAHLRKES 662
Query: 739 SRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKID--ALTPQVKTEPEENVKITQEPVVL 796
PY+R+L +Q K D+ E+ ++ L P T E+N+K+
Sbjct: 663 QTMRMPYKRYLAI--LPLMVQLKADQLARERSELQKRQLCPAAPTV-EQNIKL------- 712
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
E + E + + P +++K + P Q +K++P+
Sbjct: 713 ------EAHAIGKEDDDMYSV-----------PLKEQLKRKHP--------QANVKTDPE 747
Query: 857 ENDSSKEKPEESNEKTKRHKIKSEPKEN-DSSKGKSGGTISTVDFSKVNYNKYMAKPGKS 915
+ ++ ++P + + +K EP E + G+S + V + P ++
Sbjct: 748 QQPTASKRPRKDENSQTKPPVKIEPVEKVQQALGESDDEVVEVPIERQATEPPKPSPAQN 807
Query: 916 NQKKKGKGGKQNKKKKNSKRKP 937
N+K+K ++ K KN P
Sbjct: 808 NRKQKKNQFQRGFKAKNRGNHP 829
>gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster]
Length = 930
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/548 (42%), Positives = 342/548 (62%), Gaps = 23/548 (4%)
Query: 16 KELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDS 75
K S+ + +K+ + TK A +FP +L ++ P Y + + +V+ L+ +
Sbjct: 55 KSASEDVEAFTNKGFKNAIAATKAANAFPQGTARALYLSYPGYARVMEDLTQRVVALIGN 114
Query: 76 LLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQPKIVK 133
+L +++I + K E Q +++ E ND L E I T +D+ G + T V+ +Q ++
Sbjct: 115 VLHSKDIKGDIKKRQPEEQFEMVQECNDVLFERITTNLDIKGGLRRNTQQVVEAQVDVMS 174
Query: 134 ESWN----------KNAKASNVWQEVHDNKKKS---ANWFMLNKGAVEIERPQLQFKVKV 180
S + + + W ++S A F A I RPQ QF+ V
Sbjct: 175 SSTSIEPAVASPQTQGTPKAGSWNRTTGTPQRSMVSARLFT----AKNIVRPQTQFREPV 230
Query: 181 DNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEP 238
DNS + F P+LKEKPN+LKPLA+L E DA ++S+ HPYE+EL + P E+ + ++P
Sbjct: 231 DNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNVQSYLHPYEFELLKFQPPEEQFQKQKP 290
Query: 239 KQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 298
+++T LM++ E++ Q + EL+Q +IAID+E+H+YR++ G TCL+Q+STR KD
Sbjct: 291 VLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD 350
Query: 299 YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP 358
YI DTL LR+D+ +LN VLTD +K+ HGAD DI+WLQ+D LY+V MFDTH+A K L
Sbjct: 351 YIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN 410
Query: 359 MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418
M R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+YVY M DL
Sbjct: 411 MARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDL-L 469
Query: 419 AAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWR 477
H + L+ S + S ++CK +Y KP E ++++ R + +N+Q YALR +++WR
Sbjct: 470 QQHAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWR 529
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+LKAR
Sbjct: 530 DATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKAR 589
Query: 538 LQSLTKPV 545
Q L KP+
Sbjct: 590 DQPLVKPI 597
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 51/382 (13%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 515 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 574
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGM---KKKKQQQQVSPPHDSMDCLNYK-G 685
++ + +H I+LKAR QPL KP+ + S K ++ PHD +
Sbjct: 575 RQQLHTLHQIVLKARDQPLVKPILEAHSSTQAALPPSTKDFSSKLYCPHDFSQLEEIRDD 634
Query: 686 LPPVFPNNIICA----PSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQK---IKLKT 738
LP + N P+ ++ DP A FE + K + Q+ ++ ++
Sbjct: 635 LPTLLKRNSTTGKLEVPNKEEVAKVDP--TLAAPAMALFEKQSKPTQEEEQRWAHLRKES 692
Query: 739 SRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKID--ALTPQVKTEPEENVKITQEPVVL 796
PY+R+L +Q K D+ E+ ++ L P T E+N+K+
Sbjct: 693 QTMRMPYKRYLAI--LPLMVQLKADQLARERSELQKRQLCPAPPTV-EQNIKL------- 742
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
E + E + + P +++K + P Q +K++P+
Sbjct: 743 ------EAHAIGKEDDDMYSV-----------PLKEQLKRKHP--------QANVKTDPE 777
Query: 857 ENDSSKEKPEESNEKTKRHKIKSEPKEN-DSSKGKSGGTISTVDFSKVNYNKYMAKPGKS 915
+ ++ ++P + + +K EP E + G+S + V + P ++
Sbjct: 778 QQPTASKRPRKDENSQTKPPVKIEPVEKVQQALGESDDEVVEVPIERQATEPPKPSPAQN 837
Query: 916 NQKKKGKGGKQNKKKKNSKRKP 937
N+K+K ++ K KN P
Sbjct: 838 NRKQKKNQFQRGFKAKNRGNHP 859
>gi|383792210|gb|AFH41845.1| FI19715p1 [Drosophila melanogaster]
Length = 930
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/548 (42%), Positives = 342/548 (62%), Gaps = 23/548 (4%)
Query: 16 KELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDS 75
K S+ + +K+ + TK A +FP +L ++ P Y + + +V+ L+ +
Sbjct: 55 KSASEDVEAFTNKGFKNAIAATKAANAFPQGTARALYLSYPGYARVMEDLTQRVVALIGN 114
Query: 76 LLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQPKIVK 133
+L +++I + K E Q +++ E ND L E I T +D+ G + T V+ +Q ++
Sbjct: 115 VLHSKDIKGDIKKRQPEEQFEMVQECNDVLFERITTNLDIKGGLRRNTQQVVEAQVDVMS 174
Query: 134 ESWN----------KNAKASNVWQEVHDNKKKS---ANWFMLNKGAVEIERPQLQFKVKV 180
S + + + W ++S A F A I RPQ QF+ V
Sbjct: 175 SSTSIEPAVASPQTQGTPKAGSWNRTTGTPQRSMVSARLFT----AKNIVRPQTQFREPV 230
Query: 181 DNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEP 238
DNS + F P+LKEKPN+LKPLA+L E DA ++S+ HPYE+EL + P E+ + ++P
Sbjct: 231 DNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNVQSYLHPYEFELLKFQPPEEQFQKQKP 290
Query: 239 KQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 298
+++T LM++ E++ Q + EL+Q +IAID+E+H+YR++ G TCL+Q+STR KD
Sbjct: 291 VLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD 350
Query: 299 YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP 358
YI DTL LR+D+ +LN VLTD +K+ HGAD DI+WLQ+D LY+V MFDTH+A K L
Sbjct: 351 YIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN 410
Query: 359 MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418
M R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+YVY M DL
Sbjct: 411 MARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDL-L 469
Query: 419 AAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWR 477
H + L+ S + S ++CK +Y KP E ++++ R + +N+Q YALR +++WR
Sbjct: 470 QQHAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWR 529
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ + +H I+LKAR
Sbjct: 530 DATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKAR 589
Query: 538 LQSLTKPV 545
Q L KP+
Sbjct: 590 DQPLVKPI 597
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 51/382 (13%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 515 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 574
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGM---KKKKQQQQVSPPHDSMDCLNYK-G 685
++ + +H I+LKAR QPL KP+ + S K ++ PHD +
Sbjct: 575 RQQLHTLHQIVLKARDQPLVKPILEAHSSTQAALPPSTKDFSSKLYCPHDFSQLEEIRDD 634
Query: 686 LPPVFPNNIICA----PSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQK---IKLKT 738
LP + N P+ ++ DP A FE + K + Q+ ++ ++
Sbjct: 635 LPTLLKRNSTTGKLEVPNKEEVAKVDP--TLAAPAMALFEKQSKPTQEEEQRWAHLRKES 692
Query: 739 SRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKID--ALTPQVKTEPEENVKITQEPVVL 796
PY+R+L +Q K D+ E+ ++ L P T E+N+K+
Sbjct: 693 QTMRMPYKRYLAI--LPLMVQLKADQLARERSELQKRQLCPAAPTV-EQNIKL------- 742
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
E + E + + P +++K + P Q +K++P+
Sbjct: 743 ------EAHAIGKEDDDMYSV-----------PLKEQLKRKHP--------QANVKTDPE 777
Query: 857 ENDSSKEKPEESNEKTKRHKIKSEPKEN-DSSKGKSGGTISTVDFSKVNYNKYMAKPGKS 915
+ ++ ++P + + +K EP E + G+S + V + P ++
Sbjct: 778 QQPTASKRPRKDENSQTKPPVKIEPVEKVQQALGESDDEVVEVPIERQATEPPKPSPAQN 837
Query: 916 NQKKKGKGGKQNKKKKNSKRKP 937
N+K+K ++ K KN P
Sbjct: 838 NRKQKKNQFQRGFKAKNRGNHP 859
>gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae]
gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae]
Length = 909
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/597 (40%), Positives = 358/597 (59%), Gaps = 40/597 (6%)
Query: 5 NQEIPKSDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAG 64
N++ DE++ E+ + + A+K++V TK +FP +L + P Y +
Sbjct: 25 NKDAQAPDESSNEVGDIGEFTTK-AFKNVVGATKAVNAFPQGTARALYMTYPGYARVIDD 83
Query: 65 TSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSV 124
S +V+ L+ ++L+ + I + K L+ Q +++ E ND L E + T +D+ AG +
Sbjct: 84 LSQRVVGLIGNVLQVEGIKGDIRKRQLDEQFEMVQECNDILFERVTTNLDLKAGLRRN-- 141
Query: 125 LPSQPKIVKESWN-------------------KNAKASNVWQEVHDNKKK---SANWFML 162
P Q +V+ N +++ + W +K SA F
Sbjct: 142 -PQQ--MVEVQMNVVSSSSSSSVAADSSPSLAQDSPKAGSWNRSSAPPQKNVVSARLFT- 197
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYE 220
A I RPQ+ FK VDNS F P+LKEKPN+LKPLA+L E D+ I+++ HPYE
Sbjct: 198 ---AKNIVRPQMLFKEPVDNSALNPFVPRLKEKPNSLKPLALLPEYDDSGNIQAYLHPYE 254
Query: 221 YELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNY 280
+EL + P L+ ++P +SDT LM++ E++ Q + EL+Q +IAID+E+H+Y
Sbjct: 255 FELMKFEPPVQQLQKQKPILPNLMSDTELMLVDSVEKLKQALEELRQAPQIAIDVEHHSY 314
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
R++ G TCL+Q+STR KDYI DTL LR+++ +LN VLTD +K+ HGAD DI+WLQ+D
Sbjct: 315 RTFMGITCLVQMSTRSKDYIFDTLILRDEMHILNLVLTDPKKLKILHGADLDIEWLQRDL 374
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
LY+V MFDTH+A K L + R SLA+LLKHY D+D DK+ QL DWR RPLP+ + YAR
Sbjct: 375 SLYIVNMFDTHRAAKALNLARLSLAFLLKHYIDLDVDKSLQLADWRMRPLPQQLVDYARQ 434
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SH 459
DTH+L+YVY+ M DL + L+ + + S +CK +Y KP E ++++ R +
Sbjct: 435 DTHFLIYVYERMTNDL-LEQQVETGLLNNVYMMSTEVCKKRYNKPHVGPESHLDLVRKTK 493
Query: 460 ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P
Sbjct: 494 RNFDNRQLYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIP 553
Query: 520 QTVKEHVLDIHAIILKARLQSLTKPV----EKLQPSLDGMKKKQQQQVSPPHDSNNQ 572
V++ + +H I+LKAR Q L KP+ Q SL K ++ PHD ++Q
Sbjct: 554 PLVRQQLHTLHQIVLKARDQPLVKPILEARSSTQASLPPSSKDFSSKLYCPHDFSHQ 610
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 199/401 (49%), Gaps = 51/401 (12%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 497 DNRQLYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 556
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGM---KKKKQQQQVSPPHD-SMDCLNYKG 685
++ + +H I+LKAR QPL KP+ + + S K ++ PHD S
Sbjct: 557 RQQLHTLHQIVLKARDQPLVKPILEARSSTQASLPPSSKDFSSKLYCPHDFSHQDEIRDD 616
Query: 686 LPPVFPNNI---ICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFE 742
LP + N + P L + QDK IA+ + +K G + ++++ R E
Sbjct: 617 LPTLLKRNTSGRLQLPDEKQLPT---QDKLIAKPSMALFEKSD-GPTQEEELRWAHMRKE 672
Query: 743 T-----PYQRFLKSKEYAKAI-QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVL 796
+ PY+R+L + + Q+++ +E++EQ K L P + PEEN+K+ Q P
Sbjct: 673 SQALRMPYKRYLAILPLMEQLKQDQIAREHSEQLK-RRLCP-TASAPEENIKL-QAPATK 729
Query: 797 KQI---------KSEEKEKVEMEKEKRKKILREREEEKEEQPATKK--------IKVEKP 839
++ + + K + M+ E+ + R++E QP KK I+V +P
Sbjct: 730 AEVEIYSLPLKEQLKRKHQSNMDGEQPSTSKKARKDEN-TQPIVKKEINEQNESIEVVEP 788
Query: 840 EESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTI---- 895
E +++ ++ E + D +K P+ ++ KR +++ K + + G +
Sbjct: 789 TEESDEDDVLEVPIERQPADQAK-PPQNQGKRQKRKQLQQRFKAKNRANHPQGSNLQVPQ 847
Query: 896 ----STVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKN 932
D+ V++ ++ Q+ +G KQ KN
Sbjct: 848 PKPAGNFDYKNVDFRQFKG----GAQRARGTEIKQQMHGKN 884
>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
Length = 526
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/503 (44%), Positives = 316/503 (62%), Gaps = 14/503 (2%)
Query: 38 KTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDI 97
+ + PS L + +I + +D V+ ++ +L+ Q I + E Q ++
Sbjct: 5 QACNAMPSGKSRDLYSSHSKFIEIMDSHADNVLGIISGILQMQGIKGHIELRDPEEQLEM 64
Query: 98 LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSA 157
L E ND +LE I++ +D MAG K P ++ E + A + + A
Sbjct: 65 LQEFNDNMLERIHSNLDEMAGVKK-----KVPTVLVEHEVQIASRTTQNSSSSTSSPLKA 119
Query: 158 NWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESF 215
I RPQ+ FK +DNS F P++++KPN+LKPLA+L E DA I S+
Sbjct: 120 TLI----TGTNIARPQVNFKTLIDNSIVNPFVPRIRDKPNSLKPLAVLPEYDDAGNIVSY 175
Query: 216 CHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPYE+ELD + P +D P++ LPL T L+ I Q++ L+S+LK +IAIDL
Sbjct: 176 LHPYEFELDRFQPAKDVFVPVTPQEPLPLDTTELLFIDHESQLSALLSDLKAAPQIAIDL 235
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E+H+YR++QG+TCLMQ+STR KDYIVDTL LR++L VLNEV TD +KV HGA SDI+W
Sbjct: 236 EHHSYRTFQGFTCLMQLSTRKKDYIVDTLALRDELHVLNEVFTDPRKLKVLHGAISDIEW 295
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+D GLY+V MFDT +A + L R L +LLKHYC++++DK +QL DWR RPLP I
Sbjct: 296 LQRDLGLYLVNMFDTGEAARVLQFSRIGLQFLLKHYCNIETDKAYQLADWRMRPLPPAFI 355
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 455
+YAR DTHYLLY+YD ++ DL G +L+ + + S +CK +Y+KP+ NE+ MNI
Sbjct: 356 EYARKDTHYLLYIYDRIRNDL--LEKGGDSLLQTVYDKSTFLCKQRYQKPIVNEDSIMNI 413
Query: 456 F-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
+ RS + +++Q YALRE+ WRD+IAR +DES GYVLP HM L +A +PR++QGI AC
Sbjct: 414 YRRSRYVFDHRQMYALREILYWRDKIARQEDESPGYVLPQHMALDIASKLPREMQGILAC 473
Query: 515 CNPVPQTVKEHVLDIHAIILKAR 537
C PVP V++++ +H I+ KAR
Sbjct: 474 CTPVPSLVRQNLHALHQIMQKAR 496
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q YALRE+ WRD+IAR +DES GYVLP HM L +A +PR++QGI ACC PVP V
Sbjct: 422 DHRQMYALREILYWRDKIARQEDESPGYVLPQHMALDIASKLPREMQGILACCTPVPSLV 481
Query: 630 KEHVLDIHAIILKARLQP 647
++++ +H I+ KAR P
Sbjct: 482 RQNLHALHQIMQKARELP 499
>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 737
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/525 (43%), Positives = 333/525 (63%), Gaps = 19/525 (3%)
Query: 29 AYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSK 88
A K + + TK++ PS L + P + S + S+KV++ + LK N ++ K
Sbjct: 34 ALKILAEATKSSNKLPSGKSRDLYESCPAFHSIIKNQSNKVLSKISDFLKYTNTKGNILK 93
Query: 89 LYLEGQKDILTEANDKLLESINTRIDVMAGT---KTPSVLPSQPKIVKESWNKNAKASNV 145
+ + ++L + ND LLE + T +D + GT + L + V SWNK
Sbjct: 94 RDEDDKFELLVDVNDSLLEKVGTNLDRITGTLKNDDSTFLVKKSSSVNGSWNK------- 146
Query: 146 WQEVHDNKKKSANWFMLN---KGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL 202
+ SA+ +LN +E+PQ+ F+ KV+N +++ F+P++K K N LKPL
Sbjct: 147 ----YKGHITSASTQLLNDIFSKTKTMEKPQIHFEDKVNNDFKEPFQPRIKYKHNLLKPL 202
Query: 203 AIL-LEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQL 261
A++ E + + HPYE+EL+ + P E L + P L +TP +IT+PE++ +
Sbjct: 203 AVIPQETENGDIEYLHPYEFELNKFQPLESQLLSQPPISYKTLEETPFHLITKPEEIDPM 262
Query: 262 VSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKN 321
+ L++ +EIAIDLE+H+YRS+QG+TCL+QISTRD DY++DT+ LR LE LN++ T+ N
Sbjct: 263 IENLEKCKEIAIDLEHHSYRSFQGFTCLLQISTRDTDYVIDTIALRSKLEGLNKIFTNPN 322
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 381
IVKVFHGAD DI WLQ+D LYVV MFDTHQA K L SLAYL+ H+C + + K FQ
Sbjct: 323 IVKVFHGADLDILWLQRDLSLYVVNMFDTHQAGKLLNYSSLSLAYLMFHFCKIVAQKHFQ 382
Query: 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLK 441
+ DWR RPLP+ + YAR DTHYLLY+YD ++ L ++ ++NL+ + S IC
Sbjct: 383 MADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIEKSNEQKNLLRTVINESTRICLKT 442
Query: 442 YEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQM 500
Y+KP F+E GYM+I+ RS + +N+QKYAL+ LY WRD AR+ DES YVLPNHM+L +
Sbjct: 443 YKKPNFDESGYMSIYTRSKKIFDNRQKYALQRLYAWRDSTARELDESLAYVLPNHMMLNI 502
Query: 501 AQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
++ +PR+ QGI ACCNP+P V++++L +H IILKAR Q L KP+
Sbjct: 503 SEVLPREAQGILACCNPIPLPVRQNLLKLHLIILKAREQPLVKPI 547
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 22/137 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+QKYAL+ LY WRD AR+ DES YVLPNHM+L +++ +PR+ QGI ACCNP+P V
Sbjct: 465 DNRQKYALQRLYAWRDSTARELDESLAYVLPNHMMLNISEVLPREAQGILACCNPIPLPV 524
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPV 689
++++L +H IILKAR QPL V P H+ + V
Sbjct: 525 RQNLLKLHLIILKAREQPL----------------------VKPIHEEETLHRNTAVVNV 562
Query: 690 FPNNIICAPSNTHLSSY 706
F N I C H S +
Sbjct: 563 FDNPIYCPHDLNHESEF 579
>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
Length = 813
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/547 (42%), Positives = 339/547 (61%), Gaps = 18/547 (3%)
Query: 21 TFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ 80
TFD +Q+A+ ++ K A S P + P++ ++++ + S++K
Sbjct: 37 TFDDYLQDAFDAMRTGIKAANSLPVGDNFNYYTCFPSFNDARRKDMERMLATMQSVIKIA 96
Query: 81 NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGT-KTPSV---LPSQPK-IVKES 135
S ++ + + D+L EAND+LL+ N +D +G + P V + PK + +
Sbjct: 97 GGSSNIQARDRDEKFDLLLEANDQLLDQANILMDEESGILRNPQVELIVSQMPKPVANGT 156
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
WN + ++ + S +L G ++RPQL FK K+DNS + + P++KEK
Sbjct: 157 WNIRTNHNE-----QNSNQGSEKVRLL--GGKNVQRPQLMFKDKIDNS-SKPWMPRIKEK 208
Query: 196 PNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEP 255
PN+LKPLA+ +E+ + E F HPYE+ELD + E LK + L DT + I +P
Sbjct: 209 PNSLKPLALYIEEGEHGEVFNHPYEFELDKFQVPECQLKKRVCVRYKSLDDTRFVFIDKP 268
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
+ L+ +L+ +EIA+DLE+H+YR++QG TCLMQIST DY++DTL LR +L LNE
Sbjct: 269 TDIQTLLEDLRNHKEIAVDLEHHSYRTFQGITCLMQISTITTDYLIDTLTLRSELHRLNE 328
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 375
+ T +I+KVFHGAD DI WLQ+D LYVV MFDTHQA + L +P SLA+L+K YCD+D
Sbjct: 329 IFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAARQLNLPYLSLAHLIKKYCDID 388
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 435
+K FQL DWR RPLP +YAR DT YLLY+ D + +L AA+GK N++ + + S
Sbjct: 389 LNKQFQLADWRIRPLPLELTRYAREDTRYLLYIKDMLNNELIDAANGKSNILKAVYDQST 448
Query: 436 NICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
ICK Y KP++ EE ++++R S NN+Q YAL EL++WRD IAR++D+S YVLP
Sbjct: 449 EICKRTYVKPIWTEESCIDLYRKSRKSFNNKQMYALVELHRWRDLIAREEDDSIDYVLPK 508
Query: 495 HMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDG 554
HM+L +A+++PR++QGI ACCNP+P V+++ L IH I+LKAR Q P+ K P D
Sbjct: 509 HMMLNIAETLPREVQGILACCNPIPPLVRQNSLRIHKIVLKAREQ----PLVKFIPEQDI 564
Query: 555 MKKKQQQ 561
++ QQ
Sbjct: 565 RQRMTQQ 571
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 73/99 (73%), Gaps = 4/99 (4%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YAL EL++WRD IAR++D+S YVLP HM+L +A+++PR++QGI ACCNP+P V
Sbjct: 477 NNKQMYALVELHRWRDLIAREEDDSIDYVLPKHMMLNIAETLPREVQGILACCNPIPPLV 536
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQ 668
+++ L IH I+LKAR QPL K + P D ++ QQ
Sbjct: 537 RQNSLRIHKIVLKAREQPLVKFI----PEQDIRQRMTQQ 571
>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
Length = 834
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/515 (43%), Positives = 323/515 (62%), Gaps = 14/515 (2%)
Query: 27 QNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKTQNISKS 85
Q ++S +K TK + PS+ + S P Y S + ++ ++ + ++
Sbjct: 17 QKLFQSAMKVTKYSNELPSSGSDWDYYQSYPAYASAMKEFGGRITNVMTKIYGHYGLTGK 76
Query: 86 MSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNV 145
+ KL LE Q +++++ ND L+E IN +D AG K + +V E K +
Sbjct: 77 VGKLDLEEQMELVSDNNDILMERINLSLDEAAGLKKQA-----ETVVVEMMAKTTNINGS 131
Query: 146 WQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAIL 205
W H + ++ +L+ A I RPQL+FK K+ NS F PK+K+KP++ KPLAIL
Sbjct: 132 WNR-HSVSSPATSYKLLS--AKNILRPQLKFKEKIKNS-PGPFIPKIKDKPHSSKPLAIL 187
Query: 206 LEKYD-AIESFCHPYEYELDLYVPKEDFLKCEEPKQALP-LSDTPLMMITEPEQVTQLVS 263
LE D E F HPYE+EL+ + P F + P + + PL+MI + + L+
Sbjct: 188 LELNDLGDEEFSHPYEFELERFTPDPKFFTVLDEVPPFPSVQEIPLVMIDTEQGLKSLLK 247
Query: 264 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIV 323
+L ++ IA+DLE H+YRS+QG TCLMQIST DYI+DTL+L + L+ LNEV + IV
Sbjct: 248 DLLEETVIAVDLEAHSYRSFQGLTCLMQISTSSSDYIIDTLELWDQLQPLNEVFCNPKIV 307
Query: 324 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF 383
K+FHGAD DI+WLQ+DFG+YVV +FDT+ A K L + SL++LL+HYC V +DK +QL
Sbjct: 308 KIFHGADMDIQWLQRDFGIYVVNLFDTYHAAKLLGFAQLSLSFLLRHYCQVIADKQYQLA 367
Query: 384 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE 443
DWR RPLPE + YAR DTHYL Y+Y+ MK DL G NL+ + + NSR +C +Y
Sbjct: 368 DWRIRPLPEQMVNYAREDTHYLGYIYEKMKKDLKMKGTG-DNLLTAVWQNSRLVCLKRYR 426
Query: 444 KPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 502
P E ++ ++R S + N +Q +AL+EL+ WRDRIAR++DESTG+VLP HMLLQ+A
Sbjct: 427 IPPITAESHLELYRLSKKIFNERQLFALKELFAWRDRIAREEDESTGFVLPKHMLLQIAD 486
Query: 503 SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+P+++QGI ACC+P+P V++H+L +H IILKAR
Sbjct: 487 VLPKEMQGILACCSPIPSLVRQHLLHLHGIILKAR 521
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 19/213 (8%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q +AL+EL+ WRDRIAR++DESTG+VLP HMLLQ+A +P+++QGI ACC+P+P V
Sbjct: 447 NERQLFALKELFAWRDRIAREEDESTGFVLPKHMLLQIADVLPKEMQGILACCSPIPSLV 506
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQP-SLDGMKKKKQQQQVSPPHDSMDCLNYK---- 684
++H+L +H IILKAR PL QP ++ M Q P M L +
Sbjct: 507 RQHLLHLHGIILKAREMPLATLQHHGQPLAIPKMMPTPLDQDTEDPLYCMHDLTHSQDIR 566
Query: 685 -GLPPVF-PNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFE 742
LP + P I S + K+ Q +F E S + + ++ F
Sbjct: 567 DDLPTLLNPQTIESMASKSEEFGVRVTVKEFPQALIFAE------SAQPGIVTNVSTNFV 620
Query: 743 TPYQRFLKSKEYAKAIQEKVDKENAEQKKIDAL 775
+PY R+++ + A +E AE ++++ L
Sbjct: 621 SPYTRYIRVRALKSA------EEAAEAQRVEKL 647
>gi|405972152|gb|EKC36938.1| Exosome component 10 [Crassostrea gigas]
Length = 826
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/595 (39%), Positives = 357/595 (60%), Gaps = 54/595 (9%)
Query: 10 KSDEANKELSKTFDV--LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSD 67
++DE ++ ++ DV Q A KS+V+ T+ + + P+ ++ +Y S G D
Sbjct: 6 ENDEKSEPIAGFQDVNAFTQQALKSVVQATRVSNNLPAAGDDY------DYYSSFQGVRD 59
Query: 68 -------KVMTLVDSLLKTQNISKSMSKLY----LEGQKDILTEANDKLLESINTRIDVM 116
+V+ ++ ++L+ N+ +M+ L+ + D+L +AND +LE + + +D
Sbjct: 60 ILDIEGKRVLNIIQNVLRYHNVKGNMTSSSEATDLDDKFDVLMDANDHILEKVGSFLDES 119
Query: 117 AGTK-------TPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEI 169
AG K + P SWNK + S E + +L A I
Sbjct: 120 AGLKKKEENLIIATATPKAKLTSTASWNKKSSGSPSISE----------YKLLT--ARNI 167
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL---------AILLEKYDAIESFCHPYE 220
+RPQ++F+ K+DN + F P++ EKPNALK L +LE D + + HPY+
Sbjct: 168 QRPQVKFRDKIDNE-NRPFVPRITEKPNALKSLEESLKLPDDVNMLEDPDFV--YPHPYK 224
Query: 221 YELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNY 280
YEL + P + L+ EP + + DTPL ++ +++ ++ +L+++ +A+DLE+H+Y
Sbjct: 225 YELSVLKPTDRQLQDTEPLKPRLVEDTPLTFVSTVIELSSVIDKLRKEHIVAVDLEHHSY 284
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
RS+QG TCLMQIST D+++DTL LR DL LNE+ T +VKVFHGADSDI WLQ+D
Sbjct: 285 RSFQGITCLMQISTATDDFLIDTLALRNDLSPLNEIFTHPAVVKVFHGADSDIDWLQRDL 344
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
GLYVV MFDT QA + L R SLA+L++HYCDV +DK +QL DWR RPLP ++YAR
Sbjct: 345 GLYVVNMFDTGQAARVLNHSRFSLAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYARE 404
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SH 459
DTHYL Y+Y MK +L A + ++NL+LS S IC Y+K VF E+ Y+ ++R S
Sbjct: 405 DTHYLTYIYQRMKQELLARGNDQKNLLLSVLQRSTEICAKVYKKQVFKEDSYLELYRKSK 464
Query: 460 ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
+ N++Q AL++LY+WRD++AR +DESTGYVLPNHM+LQ+A +PR+ QGIFACCNP+P
Sbjct: 465 KVFNSRQLQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILPREQQGIFACCNPIP 524
Query: 520 QTVKEHVLDIHAIILKARLQSLTK---PVEKLQPSLDGMKKKQQQQVSPPHDSNN 571
V++ + +IH+ IL+AR L K P EK + ++ PHDS++
Sbjct: 525 PLVRQFLPEIHSFILEAREAPLLKVSLPQEKKPSVYQHPRYDPAHLLNCPHDSSH 579
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q AL++LY+WRD++AR +DESTGYVLPNHM+LQ+A +PR+ QGIFACCNP+P V
Sbjct: 468 NSRQLQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILPREQQGIFACCNPIPPLV 527
Query: 630 KEHVLDIHAIILKARLQPLTK---PVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGL 686
++ + +IH+ IL+AR PL K P EK +PS+ + ++ PHDS + + L
Sbjct: 528 RQFLPEIHSFILEAREAPLLKVSLPQEK-KPSVYQHPRYDPAHLLNCPHDSSHITDSQDL 586
Query: 687 PPVFPNNIICAPS---NTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLK-TSRFE 742
P + +++ S T+ S + K + F + + K ++K Q++ S F
Sbjct: 587 PTIPDVSMVTKSSMLYGTNNSGLIVRVKAKPLLTAFGDKRDKRAASKGQRMAAALASSFL 646
Query: 743 TPYQRFL 749
+PY FL
Sbjct: 647 SPYTMFL 653
>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
Length = 739
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/514 (43%), Positives = 324/514 (63%), Gaps = 17/514 (3%)
Query: 30 YKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKL 89
+K++++ T+ + + PS + + P + V+ + V+ L+ +LLK Q I ++
Sbjct: 4 FKTVIEGTRASNNLPSGVNWNFYNSYPKFKKAVSSRQNHVLKLISALLKNQKIPGNIRGK 63
Query: 90 YLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEV 149
+ Q +++ E ND +L+ + ID + G+ + PK A AS E
Sbjct: 64 DADHQFELVEEGNDTILDRVTHNIDTLNGSFKNVGVSVTPK---------AFAS----ES 110
Query: 150 HDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY 209
DN + ++ +L G IERPQ++FK+KVDN F+P L KPN+ PL + LE
Sbjct: 111 TDNTQAASKKRILVHGR-NIERPQIKFKIKVDNR-PVPFKPLLTSKPNSKIPLDLCLETN 168
Query: 210 -DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
D I + HPY+ EL+ + + LK + L DTP + + EQ+ +VS L
Sbjct: 169 EDGIMFYKHPYQLELEEFKVPVEHLKVSTAVKPASLEDTPFVEVYTEEQLNLMVSHLITV 228
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
E+AIDLE H+YR+YQG+TCLMQISTR+ DYI+DTL LR+ L VLNE+ T+ +VKVFHG
Sbjct: 229 NELAIDLEAHSYRTYQGFTCLMQISTRNADYIIDTLYLRDKLHVLNEIFTNPAVVKVFHG 288
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
ADSDI WLQ+D GLYVV MFDT+QA K L R+ L +LLKHYC+VD+DKTFQL+DWR R
Sbjct: 289 ADSDIPWLQRDLGLYVVNMFDTYQAAKILNFSRKGLEFLLKHYCNVDADKTFQLYDWRTR 348
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL AI YAR DTHYLLYVYD +K DL A + + N + F S ++CK +YE +
Sbjct: 349 PLSTEAIFYARCDTHYLLYVYDMIKKDLMAMSTNQCNYIELVFQRSADVCKSRYEVNILR 408
Query: 449 EEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
++ +++++ RS + + QQ YAL+ LY WRD++AR+ DES GY+LPNHMLL++++ +P++
Sbjct: 409 DDSHLSMYKRSKKMFDIQQMYALKHLYAWRDKLARELDESPGYILPNHMLLKISEMLPKE 468
Query: 508 IQGIFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
GI ACC+PVP V++ + +IH I+ A+ Q+
Sbjct: 469 SFGILACCSPVPPLVRQCLHEIHYIVKNAKEQTF 502
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 169/363 (46%), Gaps = 52/363 (14%)
Query: 472 ELYKWRDRIARDKDESTGYV-LPNHMLLQMAQSIPRDIQGIFAC-CNPVPQTVKEHVLDI 529
+LY WR R E+ Y H LL + I +D+ + CN + E V
Sbjct: 341 QLYDWRTRPL--STEAIFYARCDTHYLLYVYDMIKKDLMAMSTNQCNYI-----ELVFQR 393
Query: 530 HAIILKARLQSLTKPVEKLQP-SLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIA 588
A + K+R + V L+ S M K+ ++ + QQ YAL+ LY WRD++A
Sbjct: 394 SADVCKSRYE-----VNILRDDSHLSMYKRSKKMF------DIQQMYALKHLYAWRDKLA 442
Query: 589 RDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPL 648
R+ DES GY+LPNHMLL++++ +P++ GI ACC+PVP V++ + +IH I+ A+ Q
Sbjct: 443 RELDESPGYILPNHMLLKISEMLPKESFGILACCSPVPPLVRQCLHEIHYIVKNAKEQTF 502
Query: 649 TKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYK-----------GLPPVFPNNIICA 697
+ EKL + K Q H +D ++ LP + +
Sbjct: 503 -ENAEKLN-------EDKSFSQDVIKHIDVDMISLHDYSKSKETEADSLPTLLNDLNKLV 554
Query: 698 PSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKA 757
+ + PQ +I +F E K K S K+ I L ++ PY+ +LK+ +Y K
Sbjct: 555 DDEIEIVYFTPQ-----EITIFQEVKKK--SRKH--IGLTNIVYKQPYELYLKTIKYNKV 605
Query: 758 IQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKI 817
+++ + + + + + E + + +T + +K+IK + ++KE I
Sbjct: 606 LKKSSEIKEQINDSNEPVNASIPMECPDKLYLTPQ---VKEIKKNISDLSNVKKEIPNTI 662
Query: 818 LRE 820
+RE
Sbjct: 663 IRE 665
>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
Length = 804
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/482 (46%), Positives = 318/482 (65%), Gaps = 17/482 (3%)
Query: 70 MTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGT-KTPSVLPSQ 128
MT + +++K S ++ +E + D L E ND LL+ N +D +G + P V
Sbjct: 1 MTTMQTIMKLAGGSHNIKHRDIEEKFDFLMETNDLLLDQANVWMDEESGILQNPEVQLLV 60
Query: 129 PKI----VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSY 184
K+ V SWN K SN+ DN S + +L G + +PQL FK K++NS+
Sbjct: 61 SKVQKPTVNGSWNI-KKDSNI----SDN---SQSIRLL--GGKNVRKPQLMFKDKINNSF 110
Query: 185 EQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPL 244
+ + P++KEKPN+LKPLA+ LE+ + E F HPY +EL+ + E LK P + L
Sbjct: 111 KP-WMPRIKEKPNSLKPLALYLEEGENGEIFSHPYGFELNKFEMPECQLKKSIPVKYKSL 169
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
+T + I+ P + ++ +LK+ EIA+DLE+H+YRS+QG TCLMQIST D DY++DTL
Sbjct: 170 DNTQFIYISTPSDIKIILDDLKRYNEIAVDLEHHSYRSFQGVTCLMQISTVDTDYLIDTL 229
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
LR +L LNE+ T I+KVFHGAD DI+WLQ+D LYVV MFDTHQA K L P SL
Sbjct: 230 ILRSELHQLNEIFTKPTILKVFHGADFDIQWLQRDLSLYVVNMFDTHQAAKQLNFPYLSL 289
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
A+LLK YC+++ +K FQL DWR RPLPE ++YAR DTHYLL++ D +K +L A+G+
Sbjct: 290 AFLLKKYCNINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIELANGQS 349
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARD 483
N++ + + S +ICK Y KP++ EE MN +R S + NN+Q YA +EL+KWRD AR+
Sbjct: 350 NILKAVYDMSTDICKRTYVKPIWTEESCMNTYRKSQKMFNNKQLYAFKELHKWRDLTARE 409
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
+D+S YVLPNHMLL +A+++PR++QGI ACCNP+P V++++L +H I+LKAR Q L K
Sbjct: 410 EDDSINYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRKNLLMLHKIVLKAREQPLVK 469
Query: 544 PV 545
+
Sbjct: 470 TI 471
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NN+Q YA +EL+KWRD AR++D+S YVLPNHMLL +A+++PR++QGI ACCNP+P V
Sbjct: 389 NNKQLYAFKELHKWRDLTAREEDDSINYVLPNHMLLNIAETLPREMQGILACCNPIPPLV 448
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQV 671
++++L +H I+LKAR QPL K + P D ++ Q+ Q+
Sbjct: 449 RKNLLMLHKIVLKAREQPLVKTI----PQEDFRQRLTQRTQI 486
>gi|348514838|ref|XP_003444947.1| PREDICTED: exosome component 10 [Oreochromis niloticus]
Length = 892
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 237/583 (40%), Positives = 340/583 (58%), Gaps = 59/583 (10%)
Query: 2 SDTNQEIPKSDEANKELSKTF---DVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPN 57
SDTN DE EL F D V++ + +++ TK + P + E + P
Sbjct: 19 SDTN------DEDKDELCPGFRDVDAFVKHGFGAVLSATKASAGLPQAGDEYDFYRSFPG 72
Query: 58 YISGVAGTSDKVMTLVDSLLKTQNISKSM---SKLY-LEGQKDILTEANDKLLESINTRI 113
+ DK++ + +++ M +KL LE + D++ ++ND +LE + +
Sbjct: 73 FQEFCESQGDKLLHCMSQIMQHHGCRSHMRDRNKLTGLEERFDLVVDSNDVILERVGILL 132
Query: 114 DVMAGTKTPS--VLPSQ---PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVE 168
D G V+P+ PKIV SWN+ +S+ E + +L+ A
Sbjct: 133 DEADGVNRSQQPVMPAGFQPPKIVVSSWNRKGSSSSSRSET---------FRLLH--AKN 181
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL----------EKYDAIES---- 214
I RPQL+FK KVDNS F PK+ KPNA+KPL E D +
Sbjct: 182 ITRPQLKFKEKVDNS-NTPFIPKIFIKPNAVKPLPSYFTNKQMRKERPEDLDVPAALADF 240
Query: 215 -------------FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQL 261
F HPY+YELD E+ L EP+ P+++T L + E + L
Sbjct: 241 IHQQRTQEHVDDMFAHPYQYELDHLTIPENLLSKPEPQMYKPVAETKLSFVDTLEDLVAL 300
Query: 262 VSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKN 321
+L + E A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR ++ +LNE TD +
Sbjct: 301 NEKLCKLSEFAVDLEHHSYRSFLGLTCLMQISTRGEDFIIDTLELRSEMYILNEAFTDPS 360
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 381
IVKVFHGADSDI+WLQ+DFGLYVV +FDTHQA + L + R SL +LLKH+C VDSDK +Q
Sbjct: 361 IVKVFHGADSDIEWLQRDFGLYVVNLFDTHQASRALNLARHSLDHLLKHFCSVDSDKRYQ 420
Query: 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLK 441
L DWR RPLP+ +QYARTDTHYLLY+YDC+++ L HG+ L+ S + SR+I K
Sbjct: 421 LADWRVRPLPDEMVQYARTDTHYLLYIYDCVRVQLLDFNHGQPGLLQSVWNKSRSISLKK 480
Query: 442 YEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQM 500
Y KP++ EE Y+ + R N QQ A R L+ WRD++AR +DESTGYVLP HM++++
Sbjct: 481 YVKPIYTEESYLELQRKQKKSFNTQQLTAFRLLFAWRDKLARQEDESTGYVLPTHMMIKI 540
Query: 501 AQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
++ +P++ QGI ACCNPVP V++++ ++H ++ +AR L K
Sbjct: 541 SEELPKEPQGIIACCNPVPPLVRQYINELHLLVQEAREMPLLK 583
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 26/203 (12%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD++AR +DESTGYVLP HM++++++ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK------------PVEKLQPSLDGMKKKKQQQQVSPPHDS 677
++++ ++H ++ +AR PL K P++K + L G + + PP S
Sbjct: 563 RQYINELHLLVQEAREMPLLKAEIAAQKKTGLTPIKKPEVPLFGPHDTSRVSESDPPQIS 622
Query: 678 MDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKI---AQIGLFFEDKMKIGSNKYQKI 734
D L K ++ + + ++ + A+I LF E ++K
Sbjct: 623 ADELPVK-------QGMLFSEDEDKMDVDAQKESGLVASAKITLFEEVEIKDDQESSSAA 675
Query: 735 KLKTSR----FETPYQRFLKSKE 753
++K R FE P++ +L S +
Sbjct: 676 QMKARRIIESFENPFRMYLPSTD 698
>gi|449268441|gb|EMC79305.1| Exosome component 10, partial [Columba livia]
Length = 829
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/558 (41%), Positives = 333/558 (59%), Gaps = 49/558 (8%)
Query: 25 LVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNIS 83
L Q A ++V TK + P E + P + + D+++ + +++
Sbjct: 1 LAQYALGTVVAATKASNGLPQPGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCR 60
Query: 84 KSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIVKE 134
M SK+ LE + D+L ++ND +LE + +D AG VLP+ P+ +
Sbjct: 61 SRMKDHSKVTELEDKFDMLVDSNDVILERVGILLDEAAGVNKNQQPVLPAGLQPPQTIVS 120
Query: 135 SWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKE 194
SWN+ A E H + +S + +L+ A I RPQL+F+ K+DNS F PKL
Sbjct: 121 SWNRKAG------EAH-KRTQSETFRLLH--AKNISRPQLKFREKIDNS-NTPFVPKLFI 170
Query: 195 KPNALKPLAILLEK------------------YDAI----------ESFCHPYEYELDLY 226
KPNALKPL L K D I + F HPY+YEL+ +
Sbjct: 171 KPNALKPLPEALTKNGRERKERPEDLDVPAALADFIHQQRTQQIEQDMFAHPYQYELEHF 230
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
P + LK EP+ P+ +TP +T +++ +L +L +E A+DLE+H+YRS+ G
Sbjct: 231 SPPDGVLKKPEPQMYRPIKETPCHFVTTLDELVELNEKLMNCKEFALDLEHHSYRSFLGL 290
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 346
TCLMQISTR +D+I+DTL+LR D+ +LNE TD IVKV HGADSD++WLQKDFGLY+V
Sbjct: 291 TCLMQISTRTEDFIIDTLELRSDMNILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVN 350
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
MFDTHQA + L + R SL +LLK YC++D+DK +QL DWR RPLPE IQYAR DTHYLL
Sbjct: 351 MFDTHQAARLLNLGRHSLDHLLKLYCNIDADKQYQLADWRIRPLPEEMIQYARDDTHYLL 410
Query: 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQ 465
Y+YD ++ L + + + + SR+IC KY KP+F++E Y+ ++R LN Q
Sbjct: 411 YIYDKVREALWERGNEQPTQLQVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQ 470
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
Q A R L+ WRD++AR +DESTGYVLPNHMLL++A+ +P++ QGI ACCNPVP V++
Sbjct: 471 QLAAFRLLFAWRDKMARQEDESTGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLVRQQ 530
Query: 526 VLDIHAIILKARLQSLTK 543
+ ++H +I +AR L K
Sbjct: 531 INELHLLIQQAREMPLLK 548
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 171/376 (45%), Gaps = 62/376 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD++AR +DESTGYVLPNHMLL++A+ +P++ QGI ACCNPVP V
Sbjct: 468 NTQQLAAFRLLFAWRDKMARQEDESTGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLV 527
Query: 630 KEHVLDIHAIILKARLQPLTK---PV-----------EKLQPSL----DGMKKKKQQQQV 671
++ + ++H +I +AR PL K P+ E+L+ +L D + Q
Sbjct: 528 RQQINELHLLIQQAREMPLLKSEIPLAVKKRTPLSNPERLENTLFGPHDSSRIPTDDFQN 587
Query: 672 SPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKY 731
+ DS ++ +GL P C +S + D E+ K ++
Sbjct: 588 NSALDSGSTMDIQGLQP----ETTCLVGTATVSIFSECD----------EENEKALTSAQ 633
Query: 732 QKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKT-EPEENVKIT 790
QK + FE P++ +L S++ + ++ K D P K E K+
Sbjct: 634 QKAQRIMESFENPFRMYLPSEQNPAYV--------SQSAKFD---PSSKIYEISNRWKLM 682
Query: 791 QEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHK 850
K+ K E K+K + R + + +E E + ++ ++ E++N+K
Sbjct: 683 THTQAQKESKDETKKKAAQQSAARDQAQKAYKEATENIISVRQQAMQ--EQANKK----- 735
Query: 851 IKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMA 910
+E S+ E ++ KR K +P++ + K + D+SK N+ K A
Sbjct: 736 -----RERVMSETGTELPKQEKKRPKASQQPEKLEEPK-----QFTPFDYSKSNF-KVFA 784
Query: 911 KPGKSNQKKKGKGGKQ 926
KS Q + KQ
Sbjct: 785 GSSKSKQSPQFDPAKQ 800
>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
Length = 888
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/559 (42%), Positives = 330/559 (59%), Gaps = 49/559 (8%)
Query: 24 VLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNI 82
VL Q+A ++V TK + P E + P + + +++ + +++
Sbjct: 31 VLTQHALGTMVATTKASSGLPQPGDEYDFYRSFPGFRAYCKAQGQRLLQCMSRVMQYHGC 90
Query: 83 SKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPS---QPKIVK 133
M SK+ LE + D+L ++ND +LE + +D AG VLP+ P+ +
Sbjct: 91 RSHMRDHSKVTELEDKFDMLVDSNDVILERVGILLDEAAGVNKNQQPVLPAGLQMPQTIV 150
Query: 134 ESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK 193
SWN+ A E H + KS + +L+ A I RPQL+F K+DNS F PKL
Sbjct: 151 SSWNRKAG------EYH-KRTKSETFRLLH--AKNISRPQLKFSEKIDNS-NTPFVPKLF 200
Query: 194 EKPNALKPLAILLEK------------------YDAI----------ESFCHPYEYELDL 225
KPNALKPL L K D I + F HPY+YEL+
Sbjct: 201 IKPNALKPLPEALTKSGRERKERPEDLDVPAALADFIHQQRTQQTEQDMFAHPYQYELEH 260
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+ P + LK EP+ P+ +TP IT +++ +L +L +E A+DLE+H+YRS+ G
Sbjct: 261 FSPPDGVLKKPEPQMYRPIKETPCHFITTLDELVELNEKLMNCKEFALDLEHHSYRSFLG 320
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +D+I+DTL+LR D+ +LNE TD IVKV HGADSD++WLQKDFGLY+V
Sbjct: 321 LTCLMQISTRTEDFIIDTLELRSDMSILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLV 380
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDTHQA + L + + SL +LLK YC VD+DK +QL DWR RPLPE IQYAR DTHYL
Sbjct: 381 NMFDTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHYL 440
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNN 464
LY+YD M+ L + + + + SR+IC KY KP+F++E Y+ ++R LN
Sbjct: 441 LYIYDKMREALWEGGNKQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKRHLNT 500
Query: 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
QQ A R L+ WRD+ AR +DES GYVLPNHMLL++A+ +P++ QGI ACCNPVP V++
Sbjct: 501 QQLTAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLVRQ 560
Query: 525 HVLDIHAIILKARLQSLTK 543
+ ++H +I +AR L K
Sbjct: 561 QINELHLLIQQAREMPLLK 579
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 178/381 (46%), Gaps = 55/381 (14%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD+ AR +DES GYVLPNHMLL++A+ +P++ QGI ACCNPVP V
Sbjct: 499 NTQQLTAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLV 558
Query: 630 KEHVLDIHAIILKARLQPLTKP----VEKLQPSLDGMKKKKQQQQVSPPHDS----MD-- 679
++ + ++H +I +AR PL K K + SL +K + PHDS MD
Sbjct: 559 RQQINELHLLIQQAREMPLLKSEIALTVKKRTSLSN--PEKLENTFFGPHDSSRIPMDDF 616
Query: 680 ----CLNYKGLPPVFPNNIICAPSNT-HLSSYDPQDKKI---AQIGLFFEDKMKIGSNKY 731
L P + +++ T ++ P+ + A + +F E GS K
Sbjct: 617 QNNSALESTSAPVLERDSLFLDNERTMNIQGVQPESACLVATATVSIFSECDKDEGSEKV 676
Query: 732 QKIKLKTSR-----FETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKT-EPEE 785
K ++ FE P++ +L S++ + ++ K D P K E
Sbjct: 677 LTTAQKKAQRIMESFENPFRMYLPSEQNPAYV--------SQSAKFD---PSSKIYEISN 725
Query: 786 NVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEK 845
K+ + V K+ + E K+K + R + +E +E E + ++ ++ E++N
Sbjct: 726 RWKLLSKTQVQKESRDEAKKKAAQQSAARDQAQKEYKEATENIVSVRQQAMQ--EQANR- 782
Query: 846 TKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNY 905
K+ ++ S E + KPE+ KR K +P+E ++ K + D+SK N+
Sbjct: 783 -KRERVMS---ETGTELPKPEK-----KRPKASQQPEELEAPK-----QFTPFDYSKFNF 828
Query: 906 NKYMAKPGKSNQKKKGKGGKQ 926
K A KS Q + +Q
Sbjct: 829 -KVFAGSSKSKQSAQFDPARQ 848
>gi|345327688|ref|XP_003431189.1| PREDICTED: exosome component 10 [Ornithorhynchus anatinus]
Length = 864
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/543 (42%), Positives = 332/543 (61%), Gaps = 32/543 (5%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V+ A S+V T+ + S P E + P + + D+++ + +++
Sbjct: 24 DSFVKFALGSVVAATRASSSLPQPGDEYDFYRSFPGFRAFCETQGDRLLQCMSKVMQYHG 83
Query: 82 IS---KSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
K S++ LE + D+L ++ND +LE + +D +G +LP+ PK +
Sbjct: 84 CRSHIKDRSRVTELEDKFDLLVDSNDVILERVGILLDEASGVNKNQQPLLPAGLEVPKTI 143
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ S K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 144 VSSWNRKGGESK-------KKTKSETFHLLH--AKNILRPQLRFREKIDNS-NTPFVPKI 193
Query: 193 KEKPNALKPLA----ILLEKYDAIES-------FCHPYEYELDLYVPKEDFLKCEEPKQA 241
KPNA KPLA + D +++ F HPY+YELD + P E L+ + +
Sbjct: 194 FIKPNAQKPLAPGTYSPAGEIDRLQTGGGKNILFAHPYKYELDHFTPPEAVLEKPQVQMY 253
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
P+ TP +IT + + +L +L +E A+DLE+H+YRS+ G TCLMQISTR +D+I+
Sbjct: 254 RPVEKTPFHLITTVDDLVELNEKLLNLKEFAVDLEHHSYRSFLGLTCLMQISTRTEDFII 313
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
DTL+LR +L +LNE TD +IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R
Sbjct: 314 DTLELRSELYILNESFTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGR 373
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
SL YLLKHYC+V++DK +QL DWR RPLP + YAR DTHYLL+VYD M+LDL +
Sbjct: 374 HSLDYLLKHYCNVEADKQYQLADWRIRPLPREMLNYARDDTHYLLFVYDKMRLDLWERGN 433
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRI 480
+ + + S++IC ++ KP+F EE Y+ +++ H LN QQ A + L+ WRD+
Sbjct: 434 EQPVQLQVVWQRSKDICLKRFIKPIFTEESYLELYKKHKKHLNTQQLTAFQLLFSWRDKT 493
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR
Sbjct: 494 ARKEDESFGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMP 553
Query: 541 LTK 543
L K
Sbjct: 554 LLK 556
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 157/329 (47%), Gaps = 46/329 (13%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 476 NTQQLTAFQLLFSWRDKTARKEDESFGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 535
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCLN 682
++ + ++H +I +AR PL K GMKK ++ + + PH DC +
Sbjct: 536 RQQINEMHLLIQQAREMPLLK-----SEVATGMKKNGPLPNPERTENALFGPH---DCSH 587
Query: 683 YKGLPPVFPNNI----ICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIG------SNKYQ 732
P +PN + + + L S + + + A G I S + +
Sbjct: 588 --APPGDYPNVLNRGNVPVQERSRLFSNEKEPEPPADAGYLIASAAVITLFNEPCSREEE 645
Query: 733 KIKLKTSR---------FETPYQRFLKSKEYAKAIQE--KVDKENA--EQKKIDALTPQV 779
+ L T++ FE P++ FL S+E+ I + K D + E L+ Q
Sbjct: 646 EASLTTAQKKAQRIMESFENPFRMFLPSREHHAHISQSAKFDPSSKIYEISNRWKLSNQA 705
Query: 780 KTEPEENVKITQEPVVLKQIKSEEKEKVEME-KEKRKKILREREEEKEEQPATKKIKVEK 838
+ + + + + ++ +E+ E E KE ++ + R++ +E + K+ +V
Sbjct: 706 QAQAKSQKEEKEAAKKKAAEQTAAREQAEKEFKESTEQFISVRQQAAQENASKKRERVTS 765
Query: 839 ----PEESNEKTKQHKIKSEPKENDSSKE 863
PE EK K+ K +P++ D KE
Sbjct: 766 EQGTPEPKQEK-KRLKASQQPQKQDPPKE 793
>gi|391347098|ref|XP_003747802.1| PREDICTED: exosome component 10-like [Metaseiulus occidentalis]
Length = 867
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/536 (41%), Positives = 338/536 (63%), Gaps = 22/536 (4%)
Query: 21 TFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKT 79
TF +++V+ T A + P+ ++ +S P + + S +M ++ L+
Sbjct: 24 TFADYQMRMLRAVVEVTAAANALPTPGQDYNYYSSFPLFKEVMKAESTNIMKMMSRLVAH 83
Query: 80 QNISKSM---SKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESW 136
+K+ E + D LTE ND LLE +DV +G K S + Q V +
Sbjct: 84 HIGNKNFFQNEGTDFEEKVDQLTEINDVLLERAGIELDVASGVKRDSDI--QLTTVTK-- 139
Query: 137 NKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKP 196
K +W + ++ K+ ++ +L A + RPQL F K+DNS F P +K+KP
Sbjct: 140 ----KIDTIWNQKNERLKRESSVTLLT--AANVTRPQLSFPDKIDNSNSP-FVPIIKDKP 192
Query: 197 NALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKC------EEPKQALPLSDTPLM 250
NALKPLAIL+E D E++ HPYE+E++ + P ++ + P++ PL +TPL
Sbjct: 193 NALKPLAILVETIDGEETYSHPYEFEIEKFSPTDEQMHSFIPSIFMFPQETKPLGETPLE 252
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+++ P + +++ ELKQ ++IAIDLE+H++RS+ G+TCL+Q+ST DKDYI+D L+LR L
Sbjct: 253 LVSTPGALKKVLEELKQHRQIAIDLEHHSFRSFMGFTCLVQVSTWDKDYIIDPLELRGHL 312
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
VLNEV TD IVKV HG+ SD++WLQ+DFG+Y+V +FDT A K L R SL+YLLK
Sbjct: 313 HVLNEVTTDPKIVKVLHGSHSDVQWLQRDFGVYIVNLFDTGIAAKLLNYERLSLSYLLKK 372
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
+ V+SDK FQL DWR RPLP+ I+YARTDTHYLL + + +K +L+ A++ NL+ +
Sbjct: 373 FEQVESDKRFQLVDWRIRPLPKEMIEYARTDTHYLLSICEKLKEELNNASNEAGNLMKAV 432
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRS-HALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ S +C +YEKP+ EE + N+ ++ + N++Q YAL+ ++ WRDR+AR+ DESTG
Sbjct: 433 WQRSSLLCLKRYEKPILTEESHRNLLKTANKRFNDKQLYALKHIFAWRDRLARELDESTG 492
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
YVLPNHMLL + + +PR++QGI +CCNP P VK+ + ++H ++LKAR L+ P+
Sbjct: 493 YVLPNHMLLNICELLPREMQGIVSCCNPCPPLVKQQLNELHQMVLKAREVQLSNPL 548
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 31/270 (11%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q YAL+ ++ WRDR+AR+ DESTGYVLPNHMLL + + +PR++QGI +CCNP P V
Sbjct: 466 NDKQLYALKHIFAWRDRLARELDESTGYVLPNHMLLNICELLPREMQGIVSCCNPCPPLV 525
Query: 630 KEHVLDIHAIILKARLQPLTKP------VEKLQPSL-----DGMKKKKQQQQVSPPHDSM 678
K+ + ++H ++LKAR L+ P ++ P+L D M ++ HD +
Sbjct: 526 KQQLNELHQMVLKAREVQLSNPLLDAPKIDIPLPALHVMDFDNMLHVIHDLNIAHEHDEV 585
Query: 679 DCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFE-DKMKIGSNKYQKIKLK 737
LP + N ++ ++ + ++A+ L + D+MK G K
Sbjct: 586 R------LPTLIDENGELL-KDSRRAACEFSVPRMARSSLLPQIDRMKEGGASRMIFKSS 638
Query: 738 TS---RFETPYQRFLKSKEYAKAIQEKVD------KENAEQKKIDALTPQVKTEPEENVK 788
T R TPY+R+ + +E + E + K AE K++D + ++ EE +
Sbjct: 639 TGGVLRVITPYERYTRERERMEKEGESLSKLLEEAKREAELKEVDGEDME-SSKKEERGE 697
Query: 789 ITQEPVV--LKQIKSEEKEKVEMEKEKRKK 816
++ E K ++S E E + +KRK+
Sbjct: 698 VSNEVSADDAKALESNEPEIIRGNSKKRKR 727
>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
Length = 899
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/592 (40%), Positives = 345/592 (58%), Gaps = 57/592 (9%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
K D V++ ++V TK + + PS E L + ++ A D+++ + +++
Sbjct: 34 KDVDTFVKHGLGAVVSATKASAALPSAGDEFDLYRSFSSFQQFCASQGDRLLHCMSQIMQ 93
Query: 79 TQNISKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---P 129
M +KL LE + D++ +AND +LE + +D +G V+P+ P
Sbjct: 94 HHGCRSHMRDRNKLTGLEDRFDLVVDANDAILEKVGILLDEASGVSRSQQPVMPAGYQPP 153
Query: 130 KIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
KI+ SWN+ S A F L A I+RPQL+F+ KVDNS F
Sbjct: 154 KIIVSSWNRKGGGSR------------AQTFQL-LAAKNIQRPQLKFRDKVDNS-NTPFL 199
Query: 190 PKLKEKPNALKPL--------------------AILLE-------KYDAIESFCHPYEYE 222
K+ KPNA+KPL A L + K + F HPY+YE
Sbjct: 200 SKIFIKPNAVKPLPSYFADKHIRKERPEDLDVPAALADFIHQQRTKEHVDDMFSHPYQYE 259
Query: 223 LDLYVPKEDFLKCE-EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
LD V E+ LKC+ E + P+ +TP I+ E + L +L + E A+DLE+H+YR
Sbjct: 260 LDHLVMPEN-LKCKPEVQMYKPIDETPCQFISTLEDLVALNEKLAKTTEFAVDLEHHSYR 318
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S+ G TCLMQISTR++D+I+DTL+LR ++ +LNE TD IVKVFHGADSDI+WLQKDFG
Sbjct: 319 SFLGITCLMQISTREEDFIIDTLELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFG 378
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LYVV MFDTH A + L + R SL +LLK YCDV SDK +QL DWR RPLP+ ++YA+ D
Sbjct: 379 LYVVNMFDTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQAD 438
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-A 460
THYLLYVYD ++ DL +G+ L+ +T SR++ KY KP+F E+ YM ++R
Sbjct: 439 THYLLYVYDRVRADLFDGGNGQATLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKK 498
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
N QQ A R +Y WRD++AR++DESTGY+LPNHM++++A +P++ QGI ACCNP P
Sbjct: 499 SFNTQQLAAFRLMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPP 558
Query: 521 TVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGM--KKKQQQQVSPPHDSN 570
V++ + ++H +I +AR L K E + M K+K Q + PHD++
Sbjct: 559 LVRQQINELHQLIKQARETPLLK-AEVVAQKRKSMTPKRKPQSTLFGPHDTS 609
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 104/199 (52%), Gaps = 18/199 (9%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R +Y WRD++AR++DESTGY+LPNHM++++A +P++ QGI ACCNP P V
Sbjct: 501 NTQQLAAFRLMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLV 560
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDS-----MDCLNYK 684
++ + ++H +I +AR PL K Q K+K Q + PHD+ D L+
Sbjct: 561 RQQINELHQLIKQARETPLLKAEVVAQKRKSMTPKRKPQSTLFGPHDTSRSSESDFLDLS 620
Query: 685 GL-PPVFPNNIICAPSNTHLSSYDPQDKKI------AQIGLFFEDKMKIGSN---KYQKI 734
P P + S S D + K + A+I LF ED ++ QK
Sbjct: 621 SFETPTKPGMLF---SEEDEESVDREKKSVHGLTAPAKISLFAEDVSPASAHLTVAQQKS 677
Query: 735 KLKTSRFETPYQRFLKSKE 753
FE P++ +L SK+
Sbjct: 678 HSIMESFENPFRMYLPSKD 696
>gi|410350403|gb|JAA41805.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|397503016|ref|XP_003822132.1| PREDICTED: exosome component 10 [Pan paniscus]
Length = 909
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|343962561|dbj|BAK62868.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|432864718|ref|XP_004070425.1| PREDICTED: exosome component 10-like [Oryzias latipes]
Length = 890
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/587 (39%), Positives = 340/587 (57%), Gaps = 58/587 (9%)
Query: 3 DTNQEIPKS-----DEANKELSKTF---DVLVQNAYKSIVKCTKTAQSFPS-THENSLLI 53
D+N+E+ S +E EL F D V++ + ++ TK + P E
Sbjct: 9 DSNREVLDSNSDTNEEDKNELCPGFKDVDAFVKHGFGVVLSATKASAGLPQPGDEFDFYR 68
Query: 54 ASPNYISGVAGTSDKVMTLVDSLLKTQNIS---KSMSKL-YLEGQKDILTEANDKLLESI 109
+ P + D+++ + +++ K +KL +E + D++ ++ND +LE
Sbjct: 69 SFPGFQEFCESQGDQILQCMSQIMQHHGCRSHVKDRNKLTAVEERFDLVVDSNDVILERA 128
Query: 110 NTRIDVMAGTKTPS--VLPSQ---PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNK 164
+D G V+P+ PKIV SWN+ S+ +S + +L+
Sbjct: 129 GILLDEADGVNRNQKPVMPAGFQPPKIVVSSWNRKGSGSS---------SQSETFRLLH- 178
Query: 165 GAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL---------------------- 202
A I RPQL+FK K+DNS F PK+ KPNA+KPL
Sbjct: 179 -AKNIARPQLKFKEKIDNS-NTPFVPKIFIKPNAVKPLPSYFTNKQIRNERPEDLDVPAA 236
Query: 203 -AILLEKYDAIES----FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQ 257
A L+ + E F HPY+YELD + L EP+ P+++T L I E
Sbjct: 237 LADLIHQQRTQEHVEDMFSHPYQYELDHLTVPDSLLSKPEPQMYKPIAETKLSFIDSLED 296
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ +L +L + E A+DLE+H+YRS+ G TCLMQISTRD+D+I+DTL+LR ++ +LNE
Sbjct: 297 LVELNEKLCKLSEFAVDLEHHSYRSFLGLTCLMQISTRDEDFIIDTLELRSEMYILNEAF 356
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD 377
TD IVKVFHGADSDI+WLQ+DFGLYVV +FDTHQ + L + R SL +LL+H+C+VDSD
Sbjct: 357 TDPTIVKVFHGADSDIEWLQRDFGLYVVNLFDTHQGSRALHLARNSLDHLLRHFCNVDSD 416
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNI 437
K +QL DWR RPLP+ +QYARTDTHYLLY+YDC++ L + HG+ L+ S + S++I
Sbjct: 417 KRYQLADWRIRPLPDEMVQYARTDTHYLLYIYDCVRAQLLDSNHGQPGLLQSVWNKSKDI 476
Query: 438 CKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
KY KPVF E+ Y+ + R N QQ A R L+ WRD++AR +DESTGY LP HM
Sbjct: 477 SLTKYMKPVFTEDSYLEVLRKQKRSFNTQQLTAFRLLFAWRDKLARQEDESTGYTLPIHM 536
Query: 497 LLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
++++++ +P++ QGI ACCNPVP V++ V ++H ++ +AR L K
Sbjct: 537 MIKISEELPKEPQGIIACCNPVPPLVRQQVNELHLLVQQAREMPLLK 583
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 15/197 (7%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD++AR +DESTGY LP HM++++++ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFRLLFAWRDKLARQEDESTGYTLPIHMMIKISEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPV 689
++ V ++H ++ +AR PL K Q KK + + PHD+ + LP
Sbjct: 563 RQQVNELHLLVQQAREMPLLKAEIAAQKKKGLTPVKKPEVTLFGPHDTSRA-SESELPYF 621
Query: 690 FPNNIICAPS---NTHLSSYDPQDKKI------AQIGLFFEDKMKIGSNKYQKIKLKTSR 740
PN + + + S D ++K+ A+I L F+ ++ N ++K R
Sbjct: 622 SPNEALVKQGRLFSENESKMDVDEQKMSGLLAPAKITL-FQPEVHTEQNSLSVAQMKARR 680
Query: 741 ----FETPYQRFLKSKE 753
FE P++ +L S +
Sbjct: 681 IIESFENPFRMYLPSTD 697
>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
gi|8928564|sp|Q01780.2|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 100 kDa;
Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
autoantigen 2
gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
Length = 885
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
Length = 899
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
Length = 910
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 235/560 (41%), Positives = 331/560 (59%), Gaps = 49/560 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V++A ++V TK + P E + P + + +++ + +++
Sbjct: 52 DAFVKHALGTMVATTKASSGLPQPGDEYDFYRSFPGFRAYCEAQGQRLLHCMSRVMQYHG 111
Query: 82 ISKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
M SK+ LE + D+L ++ND +LE + +D AG VLP+ P+ +
Sbjct: 112 CRSHMRDHSKVTELEDKFDMLVDSNDIILERVGILLDEAAGVNKNQQPVLPAGLQVPQTI 171
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A E H + KS + +L+ A I RPQL+F+ K+DNS F PKL
Sbjct: 172 VSSWNRKAG------EYH-KRTKSETFRLLH--AKNISRPQLKFREKIDNS-NTPFVPKL 221
Query: 193 KEKPNALKPLAILLEK------------------YDAI----------ESFCHPYEYELD 224
KPNALKPL L K D I + F HPY+YEL+
Sbjct: 222 FIKPNALKPLPEALTKSGRERKERPEDLDVPAALADFIHQQRTQQTEQDMFAHPYQYELE 281
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ P + LK EP+ P+ +TP IT +++ +L +L +E A+DLE+H+YRS+
Sbjct: 282 HFSPPDGVLKKPEPQMYRPIKETPCHFITTLDELVELNEKLMNCKEFALDLEHHSYRSFL 341
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G TCLMQISTR +D+I+DTL+LR D+ +LNE TD IVKV HGADSD++WLQKDFGLY+
Sbjct: 342 GLTCLMQISTRTEDFIIDTLELRSDMSILNETFTDPAIVKVLHGADSDVEWLQKDFGLYL 401
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V MFDTHQA + L + + SL +LLK YC VD+DK +QL DWR RPLPE IQYAR DTHY
Sbjct: 402 VNMFDTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHY 461
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLN 463
LLY+YD M+ L + + + + SR+IC KY KP+F++E Y+ ++R LN
Sbjct: 462 LLYIYDKMREALWERGNEQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLN 521
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 523
QQ A R L+ WRD+ AR +DES GYVLPNHMLL++A+ +P++ QGI ACCNPVP V+
Sbjct: 522 TQQLAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLVR 581
Query: 524 EHVLDIHAIILKARLQSLTK 543
+ + ++H +I +AR L K
Sbjct: 582 QQINELHLLIQQAREMPLLK 601
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 177/377 (46%), Gaps = 65/377 (17%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD+ AR +DES GYVLPNHMLL++A+ +P++ QGI ACCNPVP V
Sbjct: 521 NTQQLAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLV 580
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSP---------PHDSM-- 678
++ + ++H +I +AR PL K S + KK+ +P PHDS
Sbjct: 581 RQQINELHLLIQQAREMPLLK-------SEIALTVKKRTSLSNPERLENTFFGPHDSSRI 633
Query: 679 ---DCLNYKGL----PPVFPNNIICAPS--NTHLSSYDPQDKKI---AQIGLFFE-DK-- 723
D N L PV + + + + ++ S P+ + A + +F E DK
Sbjct: 634 PMDDFHNNSALESTSAPVLERDSLFSDNERTMNIQSVQPESACLVATATVSIFSECDKDE 693
Query: 724 --MKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKT 781
K+ + +K + FE P++ +L S++ + ++ K D P K
Sbjct: 694 GNEKVLTTAQKKAQRIMESFENPFRMYLPSEQNPAYV--------SQSAKFD---PSSKI 742
Query: 782 -EPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
E K+ + V K+ + E K+K + R + + +E E + ++ ++ E
Sbjct: 743 YEISNRWKLMSKTQVQKESRDEAKKKAAQQSAARDQAQKAYKEATENIVSVRQQAMQ--E 800
Query: 841 ESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDF 900
++N K+ ++ S E + KPE+ KR K +P+E ++ K + D+
Sbjct: 801 QANR--KRERVMS---ETGTELPKPEK-----KRPKASQQPEELEAPK-----QFTPFDY 845
Query: 901 SKVNYNKYMAKPGKSNQ 917
SK N+ K A KS Q
Sbjct: 846 SKFNF-KVFAGSSKSKQ 861
>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
Length = 884
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|355744909|gb|EHH49534.1| hypothetical protein EGM_00210 [Macaca fascicularis]
Length = 887
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + + +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPPDSVFQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
gi|355557539|gb|EHH14319.1| hypothetical protein EGK_00224 [Macaca mulatta]
Length = 884
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + + +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPPDSVFQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
Length = 884
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + + +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPPDSVFQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
Length = 909
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D ++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDSLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020, partial [Trichoplax
adhaerens]
Length = 535
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 236/542 (43%), Positives = 325/542 (59%), Gaps = 40/542 (7%)
Query: 33 IVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKTQNISKSM----S 87
++K T+ P+ ++ AS ++ + D++++L +L++ ++
Sbjct: 1 LIKATQCGNKLPTAGDDYDFYASYSSFQQFMQEAGDRLLSLNGALIRHLGLNCRWPLQSD 60
Query: 88 KLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQ 147
++ + D L +AND +LE ++ ID G K +V P P +++ K A W
Sbjct: 61 AFDIDDRTDSLIDANDAILEKVDLLIDEAQGIKR-NVEPMIPANSNQNYPKIAS----WN 115
Query: 148 EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL----- 202
D + A F A I+RPQLQFK K+DNS F PKLK KPNAL PL
Sbjct: 116 TKRDKVRAMAENFKF-LHAKNIQRPQLQFKTKIDNS-SSPFIPKLKCKPNALVPLPKEYM 173
Query: 203 --------------AILLE------KYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQAL 242
I L+ D ES HPY YE+ P + LK ++P L
Sbjct: 174 EDEQTARTDKFSSKVIKLDPEAEDDNVDGQES-RHPYRYEIKHLQPMDWQLKSKKPMMYL 232
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
PL +TPL +ITE +++ L+ LK E A+DLE+H+YRSYQG+ CLMQISTRD DYIVD
Sbjct: 233 PLDETPLNVITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADYIVD 292
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
TL LR +L LNEV +D I+K+ HGADSDI WLQ+DF +YVV MFDT QA + L PR
Sbjct: 293 TLALRSELWTLNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQAARLLQFPRF 352
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
SL+YLL YC+V ++K QL DWR RPLP+ +QYAR DTHYLLY++D + +L A+
Sbjct: 353 SLSYLLLKYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFDVLTNELMNAS-T 411
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIA 481
+L+ S F S+ IC YEKPVFN++ Y+N+ H N+QQ YA +LY WRD +A
Sbjct: 412 SVDLLKSNFDRSKKICLRTYEKPVFNKKSYLNLLYKHKGRFNHQQNYAFAKLYSWRDSVA 471
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
RD DES +VLPNHMLLQ+A+++PR+ QGI ACCNP+P V++++ DIH II KAR +S+
Sbjct: 472 RDNDESANFVLPNHMLLQIAENLPREPQGILACCNPIPTLVRQYIGDIHQIIKKARERSI 531
Query: 542 TK 543
+
Sbjct: 532 NE 533
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 60/75 (80%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ YA +LY WRD +ARD DES +VLPNHMLLQ+A+++PR+ QGI ACCNP+P V
Sbjct: 453 NHQQNYAFAKLYSWRDSVARDNDESANFVLPNHMLLQIAENLPREPQGILACCNPIPTLV 512
Query: 630 KEHVLDIHAIILKAR 644
++++ DIH II KAR
Sbjct: 513 RQYIGDIHQIIKKAR 527
>gi|426327783|ref|XP_004024690.1| PREDICTED: exosome component 10 [Gorilla gorilla gorilla]
Length = 909
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPLFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|410215482|gb|JAA04960.1| exosome component 10 [Pan troglodytes]
gi|410256428|gb|JAA16181.1| exosome component 10 [Pan troglodytes]
gi|410289248|gb|JAA23224.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D ++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDSLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|410256430|gb|JAA16182.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D ++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDSLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|410215484|gb|JAA04961.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D ++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDSLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|380813854|gb|AFE78801.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419273|gb|AFH32850.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947748|gb|AFI37479.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 882
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CCSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + + +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPPDSVFQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|380813852|gb|AFE78800.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419271|gb|AFH32849.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947746|gb|AFI37478.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 884
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CCSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + + +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPPDSVFQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
Length = 860
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|410966022|ref|XP_003989537.1| PREDICTED: exosome component 10 isoform 2 [Felis catus]
Length = 862
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ ++DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIARPQLKFRERIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ EP+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPEPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+V+S+K FQL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNQQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|410966020|ref|XP_003989536.1| PREDICTED: exosome component 10 isoform 1 [Felis catus]
Length = 887
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ ++DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIARPQLKFRERIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ EP+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPEPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+V+S+K FQL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNQQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 166/376 (44%), Gaps = 66/376 (17%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCLN 682
++ + ++H +I +AR PL K G+KK ++ + + PHD +
Sbjct: 563 RQQINEMHLLIQQAREMPLLK-----SEVATGVKKTSPLPSPERLENVLFGPHDCSHAPS 617
Query: 683 YKGLPPVFPNNIICAPSNTHL------SSYDPQDKKI---AQIGLFFE--------DKMK 725
G P V + + L P+ K + A I LF E +
Sbjct: 618 -DGYPVVASDGPVPVQKQASLFPDQREEDAPPETKCLIATAVITLFNEPSAEESGKGPLT 676
Query: 726 IGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEE 785
+ K Q I FE P++ FL S E + + K +P
Sbjct: 677 VAQKKAQNI---MESFENPFRMFLPSLERRAHVSQA-----------------AKFDPSS 716
Query: 786 NV-KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNE 844
+ +I+ + Q++ KE E+ KEK + R++ +EE AT E++
Sbjct: 717 KIYEISNHWKLASQVQV-RKESKEIAKEKAAEQTAARDQAREEYKATA-------EQAVS 768
Query: 845 KTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVN 904
+Q ++S K+ + + P + +K ++ ++K+ K D + DF+ +
Sbjct: 769 VRQQAALESAAKKRERTTSDPRTTEQKQEKKRLKTSKKPKDPD-------LPEKDFTPYD 821
Query: 905 YNKYMAKPGKSNQKKK 920
Y+K K N K K
Sbjct: 822 YSKSDFKAFAGNSKSK 837
>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
Length = 912
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 57 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 116
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 117 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 176
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 177 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 226
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 227 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 286
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ + +TP +I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 287 NHFTPPDSVLQKPQPQLYRSIEETPCHLISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 346
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 347 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 406
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 407 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 466
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 467 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 526
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 527 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 586
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 587 RQQINEMHLLIQQAREMPLLK 607
>gi|335290494|ref|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [Sus scrofa]
Length = 861
Score = 418 bits (1074), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P E L+ EP+ P+ +TP ++ +++ +L +L + QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L L + + + + SR+IC K+ KP+F +E Y++++R L
Sbjct: 443 YLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 75/113 (66%), Gaps = 7/113 (6%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + LD + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 478 LKKFIKPIFTDESYLD-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 530
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTK 650
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 531 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
>gi|426239736|ref|XP_004013775.1| PREDICTED: exosome component 10 isoform 2 [Ovis aries]
Length = 862
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A ++V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADLIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ EP+ P+ +TP ++ +++ +L +L + QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPEPQLYRPIGETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ VLNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYVLNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPTQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|335290492|ref|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [Sus scrofa]
Length = 886
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P E L+ EP+ P+ +TP ++ +++ +L +L + QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L L + + + + SR+IC K+ KP+F +E Y++++R L
Sbjct: 443 YLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 182/399 (45%), Gaps = 71/399 (17%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + LD + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 478 LKKFIKPIFTDESYLD-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 530
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKP--VEKL 655
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K +
Sbjct: 531 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGV 590
Query: 656 QPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKK--- 712
+ S ++ + + PH DC + +P P+ P ++
Sbjct: 591 RKSGPLPNPERLENVLFGPH---DCSHTPS--DGYPLTPTSGPAAVQARGLLPAGEEEEA 645
Query: 713 ---------IAQIGLFFEDK--------MKIGSNKYQKIKLKTSRFETPYQRFLKSKEYA 755
A I LF E + + K Q I FE P++ FL S E+
Sbjct: 646 LLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNI---MESFENPFRMFLPSLEHR 702
Query: 756 KAIQEKVDKENAEQKKIDALTPQVKTEPEENV-KITQEPVVLKQIKSEEKEKVEMEKEKR 814
I + K++P + +I+ + Q++ +KE E+ K+K
Sbjct: 703 AHISQA-----------------AKSDPSSKIFEISNRWKLASQVQV-QKESKEIAKKKA 744
Query: 815 KKILREREEEKEEQPATKKIKVEKPEESNEKT---KQHKIKSEPKENDSSKEKPEESNEK 871
+ R++ +EE A V +++ +T K+ ++ S+P+ + +EK
Sbjct: 745 AEQTAARDQAREEFGAAAAQAVSVRQQAALETAARKRERVTSDPRTTEQKQEK------- 797
Query: 872 TKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMA 910
KR KI +PK+ D S+ + + D+SK ++ +
Sbjct: 798 -KRLKISKKPKDPDPSEKE----FTPYDYSKSDFKAFAG 831
>gi|426239734|ref|XP_004013774.1| PREDICTED: exosome component 10 isoform 1 [Ovis aries]
Length = 887
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A ++V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADLIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ EP+ P+ +TP ++ +++ +L +L + QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPEPQLYRPIGETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ VLNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYVLNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPTQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
Length = 883
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/559 (41%), Positives = 335/559 (59%), Gaps = 48/559 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V++A ++V TK + P E + P + D+++ + +++
Sbjct: 31 DAFVKHALGTVVSATKASTGLPQGGDEYDFYRSFPGFRDFCESQGDRLLHCMSQVMQYHG 90
Query: 82 IS---KSMSKL-YLEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLP---SQPKIV 132
+ SK+ LE + D+L +AND +LE + +D +G +LP PK +
Sbjct: 91 CRSHIRDRSKVTLLEDKFDLLIDANDLILEKVGILLDEASGLNRNQQPILPVGLQPPKTI 150
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ K S++ K K+ + +L+ A I RPQL+FK K+DNS F KL
Sbjct: 151 VSSWNR--KTSDL-----SKKGKNETFRLLH--AKNILRPQLKFKEKIDNS-NTPFVSKL 200
Query: 193 KEKPNALKPLAILLEKYDAIES---------------------------FCHPYEYELDL 225
KPNA KPL +L K + FCHPY+YELD
Sbjct: 201 FVKPNAQKPLPEVLRKRLETQQRQEDLDVPSALAEFIHQQRMNISEEYMFCHPYQYELDH 260
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+VP E ++ + + L L D P + + E + L +L Q E A+DLE+H+YRS+ G
Sbjct: 261 FVPLELSMEKPDIQPILSLQDAPCNFVMKLEDLVALNEKLLQCAEFAVDLEHHSYRSFLG 320
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +DYI+D L+LR +L +LNE T+ +I+KVFHGADSDI+WLQKDFGLY+V
Sbjct: 321 LTCLMQISTRTEDYIIDVLELRSNLYILNESFTNPSIIKVFHGADSDIEWLQKDFGLYIV 380
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDTHQA + L + R SL +LL+ YC+V+SDK +QL DWR RPLPE ++YAR DTHYL
Sbjct: 381 NMFDTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMLEYARVDTHYL 440
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNN 464
LY+YD M++ L AA+G+ NL+ + S++IC ++ K +F EE Y+++++ LN
Sbjct: 441 LYIYDKMRIALLDAANGQPNLLQLVWQRSKDICLKRFTKLIFTEESYLDLYQKQKKHLNT 500
Query: 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
QQ A R L+ WRD+IAR +DESTGYVLPNHML+++A+ +P++ QGI ACCNPVP V++
Sbjct: 501 QQLTAFRLLFAWRDKIARREDESTGYVLPNHMLMKIAEELPKEPQGIIACCNPVPPLVRQ 560
Query: 525 HVLDIHAIILKARLQSLTK 543
+ +++ +I +AR L K
Sbjct: 561 QINELYLLIQQARETPLLK 579
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 183/406 (45%), Gaps = 88/406 (21%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD+IAR +DESTGYVLPNHML+++A+ +P++ QGI ACCNPVP V
Sbjct: 499 NTQQLTAFRLLFAWRDKIARREDESTGYVLPNHMLMKIAEELPKEPQGIIACCNPVPPLV 558
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKK-------KQQQQVSPPHD-SMDCL 681
++ + +++ +I +AR PL L+ + K+K + + + PHD S+
Sbjct: 559 RQQINELYLLIQQARETPL------LKSEVGSAKRKGPMANPERMENLLFGPHDASLQSA 612
Query: 682 N----YKGLP------------------PVFPNNIICAPSNTHLSSYDPQDKKIAQIGLF 719
+ Y G P+ P I+ S T + + +D++I
Sbjct: 613 DNNHLYSGTGLQLLEGSLFTDEEPAVAVPISPAYILARASITMFNGF--EDEEIPS---- 666
Query: 720 FEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQV 779
K S QK + FE P++ FL S++ + ++ K+D T
Sbjct: 667 -----KSWSVSQQKSRTILESFENPFKMFLPSEDRQAHV--------SQAAKLDPNTKMF 713
Query: 780 KTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKV--- 836
+ + + V L Q + E K K + ++KR++ + +K+ + + + K
Sbjct: 714 EISKQWKL------VSLAQQEKEAKAKEDARRKKREEKAAREQSKKDFKSSVENFKSVRE 767
Query: 837 -EKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTI 895
K EESN+ K+ ++ SEP +K KR K E ++ DS
Sbjct: 768 QAKDEESNK--KRERVSSEPGSETMKSDK--------KRMKHSEETQKPDSQT-----PF 812
Query: 896 STVDFSKVNYNKYMAKPGKSNQKKKG-----KGGKQNKKKKNSKRK 936
+ D+SK ++ + G SN K + K + KKK S RK
Sbjct: 813 TPFDYSKSDFKMFA---GSSNVKSQSEFDPNKQTPKEKKKNTSTRK 855
>gi|359319089|ref|XP_003638993.1| PREDICTED: exosome component 10 isoform 1 [Canis lupus familiaris]
Length = 861
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 328/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLHCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIVRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P E L+ +P+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPESVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPTIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPVQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|359319087|ref|XP_535408.4| PREDICTED: exosome component 10 isoform 2 [Canis lupus familiaris]
Length = 886
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 328/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLHCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIVRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P E L+ +P+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPESVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPTIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPVQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 180/402 (44%), Gaps = 65/402 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKP-----VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYK 684
++ + ++H +I +AR PL K V+K P L G ++ + + PHD +
Sbjct: 563 RQQINEMHLLIQQAREMPLLKSEVASGVKKSGP-LPG--PERLENVLFGPHDCSHA-SSD 618
Query: 685 GLPPVFPNNIICAPSNTHLSSYDPQDKKI---------AQIGLFFE--------DKMKIG 727
G P + N + A L +++ + A I LF E + +
Sbjct: 619 GYPMMPSNGPVPAQKQASLFPERREEEALPDTGCLIATAVITLFNEPSAEESGKSPLTVA 678
Query: 728 SNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENV 787
K Q I FE P++ FL S E+ + + K +P +
Sbjct: 679 QKKAQNI---MESFENPFKMFLPSLEHRAHVSQA-----------------AKFDPSSKI 718
Query: 788 -KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKT 846
+I+ + Q++ KE E KEK + R++ KEE AT E++
Sbjct: 719 YEISNRWKLASQVQV-HKEPKETAKEKAAEQTAARDQAKEEYRATV-------EQAVSVR 770
Query: 847 KQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYN 906
+Q ++S K+ + + P + +K ++ ++K+ K D + T D+SK ++
Sbjct: 771 QQAALESAAKKRERTTSDPRTTEQKQEKKRLKTAKKPKDPDPPEKDFT--PYDYSKSDFK 828
Query: 907 KYM----AKPGK----SNQKKKGKGGKQNKKKKNSKRKPFLF 940
+ +KP + Q + GK KK K S K F
Sbjct: 829 AFAGNSKSKPSSQFDPNKQTQPGKKCAAPKKLKQSGNKSMSF 870
>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 isoform 1 [Equus caballus]
Length = 886
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/561 (41%), Positives = 328/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVHKSQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+FK K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFKEKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQARPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+++TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPQPQLYRPVAETPCHFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE TD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRREDFIVDTLELRSDMYILNESFTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR++C K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 172/389 (44%), Gaps = 55/389 (14%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCLN 682
++ + ++H +I +AR PL K G+KK ++ + + PHD +
Sbjct: 563 RQQINEMHLLIQQAREMPLLK-----SEVAAGVKKSGPLPNPERLENVLFGPHDCSHAPS 617
Query: 683 --YKGLPPVFPNNIICAPSNTHLSSYDPQDKK-----------IAQIGLFFE-------- 721
Y +P P P S + Q ++ A I LF E
Sbjct: 618 DGYTVIPTNGP-----MPVQKQASLFPDQKEEEALLDTKCLVATAVITLFNEPSAEENGK 672
Query: 722 DKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQE--KVDK-----ENAEQKKIDA 774
+ + K Q I FE P++ FL S E+ I + K D E + + K+ A
Sbjct: 673 GPLTVAQKKAQNI---MESFENPFRMFLPSLEHHAHISQAAKFDPSSKIYEISNRWKL-A 728
Query: 775 LTPQVKTEPEENVK--ITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATK 832
QV+ E +E K ++ Q K E + E R++ E +K E+ +
Sbjct: 729 SQIQVQKESKETAKEEAAEQTAAQDQAKEEYRAAAEQAVSVRQQAALENAAKKRERTSDS 788
Query: 833 KIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKEN-DSSKGKS 891
+ +K E+ K + +P E D + +S+ K KS+P D +K
Sbjct: 789 RTTEQKQEKKRLKIAKKPKDPDPPEKDFTPYDYSQSDFKAFAGNSKSKPSSQFDPNKQTQ 848
Query: 892 GG--TISTVDFSKVNYNKYMAKP-GKSNQ 917
G I+ + NK M+ P GKS++
Sbjct: 849 SGKKCIAAKKLKQSMGNKSMSFPAGKSDR 877
>gi|338722160|ref|XP_003364495.1| PREDICTED: exosome component 10 isoform 2 [Equus caballus]
Length = 861
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/561 (41%), Positives = 328/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVHKSQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+FK K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFKEKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQARPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+++TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPQPQLYRPVAETPCHFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE TD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRREDFIVDTLELRSDMYILNESFTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR++C K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
Length = 679
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
melanoleuca]
Length = 885
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 56 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 115
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 116 CRSNIKDRRKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 175
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 176 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIARPQLKFREKIDNS-NTPFLPKI 225
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 226 FIKPNAQKPLPRALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 285
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 286 DHFTPPDPVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSF 345
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR ++ +LNE LTD +IVKVFHGADSDI+WLQKDFGLY
Sbjct: 346 LGLTCLMQISTRTEDFIIDTLELRSEMYILNESLTDPSIVKVFHGADSDIEWLQKDFGLY 405
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 406 VVNMFDTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTH 465
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-L 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 466 YLLYIYDKMRLELWERGNEQPVQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHL 525
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 526 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 585
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H ++ +AR L K
Sbjct: 586 RQQINEMHLLVQQAREMPLLK 606
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 29/296 (9%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 526 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 585
Query: 630 KEHVLDIHAIILKARLQPLTKP-----VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYK 684
++ + ++H ++ +AR PL K V K P L G ++ + + PHD +
Sbjct: 586 RQQINEMHLLVQQAREMPLLKSEAATGVRKSGP-LPG--PERLENVLFGPHDCSHA-SSD 641
Query: 685 GLPPVFPNNIICAPSNTHLSSYDPQDKKI---------AQIGLFFE--------DKMKIG 727
G P + N + A L +D+ + A I LF E + +
Sbjct: 642 GYPVIPSNGPVPAQKQASLFPDQREDEVLPDTRCLIATAVITLFNEPSAEESRKSPLTVA 701
Query: 728 SNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENV 787
K Q I FE P++ + A +Q + ++ ++K T EE
Sbjct: 702 QKKAQNI---MESFENPFKMISNRWKLATQVQVHKEAKDTAKEKAAEQTAARDQAKEEYQ 758
Query: 788 KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESN 843
++ V ++Q + E + E+ E+++EK+ +KK K P E +
Sbjct: 759 ATAEQAVSVRQQAALESAAKKRERTTSDPRTTEQKQEKKRLKTSKKPKDPDPPEKD 814
>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
Length = 886
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/561 (41%), Positives = 332/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 30 DSFVKFALASVVAVTKASAGLPQFGDEYDFYRSFPGFQAFCETQGDRLLHCMSRVMQYHG 89
Query: 82 ISKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGT--KTPSVLPSQ---PKIV 132
S+ SK+ LE + D+L +AND +LE + +D +G VLP+ PK +
Sbjct: 90 CRSSIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 149
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 150 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIIRPQLRFREKIDNS-NTPFLPKI 199
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 200 FVKPNAQKPLPRALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 259
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 260 DHFSPPDSVLQKPQPQLYRPVHETPCHFISSLDKLVELNEKLLNCQEFAVDLEHHSYRSF 319
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQ+STR +D+I+DTL+LR ++ +LNE LT+ IVKVFHGADSDI+WLQKDFGLY
Sbjct: 320 LGLTCLMQVSTRTEDFIIDTLELRSEMYLLNESLTNPTIVKVFHGADSDIEWLQKDFGLY 379
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC VDSDK +QL DWR RPLPE + YAR DTH
Sbjct: 380 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVDSDKQYQLADWRIRPLPEEMLSYARDDTH 439
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR++C K+ KP+F +E Y+ ++R L
Sbjct: 440 YLLYIYDRMRLELWERGNEQPTQLQVVWQRSRDLCLKKFIKPIFTDESYLELYRKQKKHL 499
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 500 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 559
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H ++ +AR L K
Sbjct: 560 RQQINEMHLLVQQAREMPLLK 580
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 500 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 559
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H ++ +AR PL K
Sbjct: 560 RQQINEMHLLVQQAREMPLLK 580
>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
Length = 673
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + + +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPPDSVFQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
melanoleuca]
Length = 887
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRRKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIARPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPRALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDPVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR ++ +LNE LTD +IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSEMYILNESLTDPSIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-L 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPVQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H ++ +AR L K
Sbjct: 563 RQQINEMHLLVQQAREMPLLK 583
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 168/374 (44%), Gaps = 62/374 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKP-----VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYK 684
++ + ++H ++ +AR PL K V K P L G ++ + + PHD +
Sbjct: 563 RQQINEMHLLVQQAREMPLLKSEAATGVRKSGP-LPG--PERLENVLFGPHDCSHA-SSD 618
Query: 685 GLPPVFPNNIICAPSNTHLSSYDPQDKKI---------AQIGLFFE--------DKMKIG 727
G P + N + A L +D+ + A I LF E + +
Sbjct: 619 GYPVIPSNGPVPAQKQASLFPDQREDEVLPDTRCLIATAVITLFNEPSAEESRKSPLTVA 678
Query: 728 SNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENV 787
K Q I FE P++ FL S E+ + + K +P +
Sbjct: 679 QKKAQNI---MESFENPFKMFLPSLEHRAHVSQA-----------------AKFDPSSKI 718
Query: 788 -KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKT 846
+I+ + Q++ KE + KEK + R++ KEE AT E++
Sbjct: 719 YEISNRWKLATQVQV-HKEAKDTAKEKAAEQTAARDQAKEEYQATA-------EQAVSVR 770
Query: 847 KQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYN 906
+Q ++S K+ + + P + +K ++ ++K+ K D + DF+ +Y+
Sbjct: 771 QQAALESAAKKRERTTSDPRTTEQKQEKKRLKTSKKPKDPDPPEK-------DFTPYDYS 823
Query: 907 KYMAKPGKSNQKKK 920
K K N K K
Sbjct: 824 KSDFKAFAGNSKSK 837
>gi|344283519|ref|XP_003413519.1| PREDICTED: exosome component 10 isoform 2 [Loxodonta africana]
Length = 862
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSQVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK------YDAIES-----------------------FCHPYEYEL 223
KPNA KPL L K +D E F HPY++EL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPHDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQHEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP I+ +++ +L +L +E A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPQPQLYRPVEETPCHFISSLDELVELNEKLLNCKEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLKHYC V+S+K +QL DWR RPLP+ + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
Length = 887
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
Length = 887
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
Length = 862
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
Length = 864
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 35 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 94
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 95 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 154
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 155 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 204
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 205 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 264
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 265 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 324
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 325 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 384
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 385 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 444
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 445 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 504
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 505 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 564
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 565 RQQINEMHLLIQQAREMPLLK 585
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 505 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 564
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 565 RQQINEMHLLIQQAREMPLLK 585
>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
gi|341940669|sp|P56960.2|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
autoantigen 2 homolog
Length = 887
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|344283517|ref|XP_003413518.1| PREDICTED: exosome component 10 isoform 1 [Loxodonta africana]
Length = 887
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/561 (41%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSQVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK------YDAIES-----------------------FCHPYEYEL 223
KPNA KPL L K +D E F HPY++EL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPHDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQHEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP I+ +++ +L +L +E A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPQPQLYRPVEETPCHFISSLDELVELNEKLLNCKEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLKHYC V+S+K +QL DWR RPLP+ + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|351713711|gb|EHB16630.1| Exosome component 10 [Heterocephalus glaber]
Length = 882
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKMDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FVKPNAQKPLPQALSKERRECPQDRPEDLDVPPALADFIHQQRTQQIEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P L+ +P+ P+ +TP ++ +++ +L +L +E A+DLE+H+YRS+
Sbjct: 263 DHFTPPASVLQKPQPQLHRPVEETPCHFVSSLDELVELNEKLLNCEEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LT+ IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTNPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL YLL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDYLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPTQLQAVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFSWRDKTARREDESFGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 184/400 (46%), Gaps = 58/400 (14%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFSWRDKTARREDESFGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKP-----VEKLQPSLDGMKKKKQQQQVSPPHDSMDCL--N 682
++ + ++H +I +AR PL K V+K P L G+ ++ + + PHD
Sbjct: 563 RQQINEMHLLIQQAREMPLLKSETAAGVKKSGP-LPGV--ERLENILFGPHDCSHAPPDG 619
Query: 683 YKGLPPVFPNNIICAPSNTHLSSY-DPQDK-----KIAQIGLFFEDK--------MKIGS 728
+ P P P+ S + DP+++ A I LF E + +
Sbjct: 620 HPLTPTAGP-----VPARKQASLFTDPKEETQSLLATAVITLFNEPSAEENGKTPLTVAQ 674
Query: 729 NKYQKIKLKTSRFETPYQRFLKSKEYAKAIQE--------KVDKENAEQKKIDALTPQVK 780
K Q I FE P++ FL S E+ I + K+ + + K + Q +
Sbjct: 675 KKAQNI---MESFENPFRMFLPSLEHRAHISQAAKFDPSSKIYEISNRWKLASQVLVQKE 731
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
+ K+ ++ +Q K E + +E R++ E +K E+ + +E+ +
Sbjct: 732 AKEIAKKKVAEQTATREQAKEEYRATLEQAISVRQQAALENAAKKRERTTSDPRTMEQKQ 791
Query: 841 ESNEKTKQHKIKSEPK-----ENDSSKEKPEESNEKTKRHKIKSEPKEN-DSSKGKSGG- 893
E K+ KI +PK E D + +SN K K +P + D +K S G
Sbjct: 792 EK----KRLKISKKPKDPGPPEKDFTPYDYSQSNFKAFAGDSKPKPSSHFDPNKQASAGK 847
Query: 894 -TISTVDFSKVNYNKYMAKP-GKSNQKKKGKGGKQNKKKK 931
++ + NK M+ P GKS+ +G + N K+
Sbjct: 848 NCVAAKKLKQSVGNKSMSFPTGKSD-----RGFRHNWPKR 882
>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
Length = 834
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRRKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIARPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPRALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDPVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR ++ +LNE LTD +IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSEMYILNESLTDPSIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-L 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPVQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H ++ +AR L K
Sbjct: 563 RQQINEMHLLVQQAREMPLLK 583
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 61/367 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCLN 682
++ + ++H ++ +AR PL K + G++K ++ + + PHD +
Sbjct: 563 RQQINEMHLLVQQAREMPLLK-----SEAATGVRKSGPLPGPERLENVLFGPHDCSHA-S 616
Query: 683 YKGLPPVFPNNIICAPSNTHLSSYDPQDKKI---------AQIGLFFE--------DKMK 725
G P + N + A L +D+ + A I LF E +
Sbjct: 617 SDGYPVIPSNGPVPAQKQASLFPDQREDEVLPDTRCLIATAVITLFNEPSAEESRKSPLT 676
Query: 726 IGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEE 785
+ K Q I FE P++ FL S E+ + + K +P
Sbjct: 677 VAQKKAQNI---MESFENPFKMFLPSLEHRAHVSQA-----------------AKFDPSS 716
Query: 786 NV-KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNE 844
+ +I+ + Q++ KE + KEK + R++ KEE AT E++
Sbjct: 717 KIYEISNRWKLATQVQV-HKEAKDTAKEKAAEQTAARDQAKEEYQATA-------EQAVS 768
Query: 845 KTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVN 904
+Q ++S K+ + + P + +K ++ ++K+ K D + T D+SK +
Sbjct: 769 VRQQAALESAAKKRERTTSDPRTTEQKQEKKRLKTSKKPKDPDPPEKDFT--PYDYSKSD 826
Query: 905 YNKYMAK 911
+ + +
Sbjct: 827 FKAFAGE 833
>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
Length = 916
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 36 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 95
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 96 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 155
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 156 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 205
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 206 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 265
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 266 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 325
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 326 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 385
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 386 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 445
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 446 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 505
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 506 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 565
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 566 RQQINEMHLLIQQAREMPLLK 586
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 506 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 565
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 566 RQQINEMHLLIQQAREMPLLK 586
>gi|417405124|gb|JAA49287.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6 [Desmodus rotundus]
Length = 888
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/561 (40%), Positives = 328/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A ++V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGTVVAVTKASGGLPQCGDEYDFYRSFPGFQAFCETQGDRLLQCMGRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI L+ + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELDDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFRPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L + D I + F HPY+YEL
Sbjct: 203 FVKPNAQKPLPQALSRERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDVFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPQPQLYRPVGETPCRFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+++DTL+LR D+ +LNE LT IVKVFHGADSD++WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFVIDTLELRSDMYILNESLTHPAIVKVFHGADSDVEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA L + R SL +LLK YCDV+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAACLLNLGRHSLDHLLKLYCDVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFKLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQARDMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFKLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQARDMPLLK 583
>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
Length = 831
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|410899603|ref|XP_003963286.1| PREDICTED: exosome component 10-like [Takifugu rubripes]
Length = 885
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 237/592 (40%), Positives = 338/592 (57%), Gaps = 55/592 (9%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
K D V+ ++V TK + P + E + P + D ++ + ++K
Sbjct: 31 KDVDAFVKYGLGTVVSATKASAGLPQAGDEYDFYRSFPGFQEFCESQGDNLLRCMSQVMK 90
Query: 79 TQNI-SKSMSKLYLEGQKD---ILTEANDKLLESINTRIDVMAG---TKTPSVLPSQ--- 128
S M + L GQ+D ++ ++ND +LE + +D G T+ P ++P+
Sbjct: 91 HHGCRSHMMDQNNLTGQEDRFDLVVDSNDAILERVGILLDEADGVNRTRDP-IMPAGFQP 149
Query: 129 PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLF 188
PKIV SWN+ S E+ + +L+ A + RPQL+FK KVDNS F
Sbjct: 150 PKIVVSSWNRKGSGSGGRFEM---------FRLLH--AKNVARPQLKFKEKVDNS-NTPF 197
Query: 189 EPKLKEKPNALKPL-----------------------AILLEKYDAIES----FCHPYEY 221
PK+ KPNA+KPL A L+ + E+ F HPY+Y
Sbjct: 198 IPKIFIKPNAVKPLPSYFTNKQMHRERPEDLDVPAALADLIHQQRVQENVDDMFAHPYQY 257
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
ELD E L EP+ P+ +T IT E + L +L Q E A+DLE+H+YR
Sbjct: 258 ELDHLTIPESLLSKPEPQLYKPVEETKCSFITTLEDLVALNEKLCQLSEFAVDLEHHSYR 317
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S+ G TCLMQISTR++D+I+DTL++R ++ +LNE TD IVKVFHGADSDI+WLQ+DFG
Sbjct: 318 SFLGITCLMQISTREEDFIIDTLEVRSEMYILNEAFTDPAIVKVFHGADSDIEWLQRDFG 377
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LYVV +FDTHQA + L + R SL +LL H+C+V SDK +QL DWR RPLPE +QYAR+D
Sbjct: 378 LYVVRLFDTHQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARSD 437
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-A 460
THYLLY+YD ++ L HG+ L+ S + SR+I KY KP+F EE Y+ + R
Sbjct: 438 THYLLYIYDRVRAQLLDFNHGQAGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKK 497
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
N QQ A R L+ WRD++AR +DESTGY LP HM++++++ +P++ QGI ACCNPVP
Sbjct: 498 SFNTQQLAAFRLLFAWRDKLARQEDESTGYALPTHMMIKISEELPKEPQGIIACCNPVPP 557
Query: 521 TVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMK--KKQQQQVSPPHDSN 570
V++ V ++H ++ +AR L K E G+ K Q + PHD++
Sbjct: 558 LVRQQVNELHLLVQQAREMPLLK-AEIAAQKTRGLTPIGKSQNTLFGPHDTS 608
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 181/395 (45%), Gaps = 70/395 (17%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD++AR +DESTGY LP HM++++++ +P++ QGI ACCNPVP V
Sbjct: 500 NTQQLAAFRLLFAWRDKLARQEDESTGYALPTHMMIKISEELPKEPQGIIACCNPVPPLV 559
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPV 689
++ V ++H ++ +AR PL K Q + K Q + PHD+
Sbjct: 560 RQQVNELHLLVQQAREMPLLKAEIAAQKTRGLTPIGKSQNTLFGPHDTSRV--------- 610
Query: 690 FPNNIICAPSNTHLSSYDPQDKKIAQIGLFFED---KMKIGSNKYQKIKL--KTSRFETP 744
+ S+ H S D + Q GL F D KM+I +K + K + FE P
Sbjct: 611 -------SESDLHPFSSDGLPE---QRGLLFSDDEQKMEIDMSKTHSLMAVAKITLFEEP 660
Query: 745 YQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEK 804
+ KS A+ ++++ E E P P E++ + Q K +
Sbjct: 661 ERPKEKSLSVAQMKAQRIE-ETFE-------NPFRMYLPSEDIHVNQ------NAKFDPS 706
Query: 805 EKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE---ESNEKTKQHKIKSEPKENDSS 861
K+ E K+ K+L VEK + E+ K KQ + K + K+
Sbjct: 707 SKM-FEISKKWKLL----------------SVEKQQQELEAKRKAKQ-EAKEQAKKAIEE 748
Query: 862 KEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKG 921
++K ++S +++ ++ + +S+KG GGT FS+V + KP +KK+
Sbjct: 749 RKKAKQSYKESLQNVATVRQQAAESAKG--GGTKRERVFSEV--GESTPKP----RKKQM 800
Query: 922 KGGKQNKKKKNSKRKPFLFLWLSQNILQLFIWELP 956
K + + KPF + SQ+ L++F P
Sbjct: 801 KCAETTETSSQDTFKPFDY---SQSDLKVFTGTTP 832
>gi|392340772|ref|XP_003754165.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
gi|392348530|ref|XP_003750137.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
Length = 860
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQVGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K K+ + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKAETFRLLH--AKNILRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRAQQVEQDVFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P L+ +P+ P+ +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPPSVLQRPQPQLYRPVEETPCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|392340770|ref|XP_003754164.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|392348528|ref|XP_003750136.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
Length = 885
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQVGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K K+ + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKAETFRLLH--AKNILRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRAQQVEQDVFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P L+ +P+ P+ +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPPSVLQRPQPQLYRPVEETPCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|348571395|ref|XP_003471481.1| PREDICTED: exosome component 10-like isoform 2 [Cavia porcellus]
Length = 860
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D AG VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEAAGLNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL +L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQVLSKERRERPQDRPEDLDVPPALADFIHQQRTQQIEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P E L+ +P+ P+ +TP ++ +++ +L +L + +E A+DLE+H+YRS+
Sbjct: 263 DHFTPSESVLQKPQPQLYRPVEETPCHFVSSLDELVELNEKLLRCEEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D++VDTL+LR ++ +LNE LT+ IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFLVDTLELRSEMYILNESLTNPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+LDL + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLDLWERGNEQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|348571393|ref|XP_003471480.1| PREDICTED: exosome component 10-like isoform 1 [Cavia porcellus]
Length = 885
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D AG VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEAAGLNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL +L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQVLSKERRERPQDRPEDLDVPPALADFIHQQRTQQIEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P E L+ +P+ P+ +TP ++ +++ +L +L + +E A+DLE+H+YRS+
Sbjct: 263 DHFTPSESVLQKPQPQLYRPVEETPCHFVSSLDELVELNEKLLRCEEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D++VDTL+LR ++ +LNE LT+ IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFLVDTLELRSEMYILNESLTNPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+LDL + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLDLWERGNEQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 34/215 (15%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCL- 681
++ + ++H +I +AR PL K + G+KK ++ + + PHD
Sbjct: 563 RQQINEMHLLIQQAREMPLLK-----SETAAGVKKSGPLPDIERLENVLFGPHDCSHAPP 617
Query: 682 -NYKGLPPVFPNNIICAPSNTHLSSY-DPQDKKI---------AQIGLFFEDKMKIGSNK 730
+Y P P P+ S + DP+++ + A I +F E + N
Sbjct: 618 DSYPVTPTAGP-----VPAWKQASLFADPREETLLDTQCLLATAVITVFDEPSAEENGNT 672
Query: 731 YQKIKLKTSR-----FETPYQRFLKSKEYAKAIQE 760
K +R FE P++ FL S E+ I +
Sbjct: 673 PLTAAQKRARNIMESFENPFRMFLPSLEHRAHISQ 707
>gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans]
gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans]
Length = 896
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/573 (40%), Positives = 342/573 (59%), Gaps = 33/573 (5%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S+ + +KS + TK A +FP +L ++ P Y + + +V+ L+ ++L
Sbjct: 28 SEDIEAFTNKGFKSAIAATKAANAFPQGTARALYLSYPGYARVIEDLTQRVVALIGNVLH 87
Query: 79 TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ-------- 128
+++I + K +E Q +++ E ND L E I T +D+ AG + T V+ +Q
Sbjct: 88 SKDIKGDIKKRQMEEQFEMVQECNDLLFERITTNLDIKAGLRRNTQQVVEAQVDVMTSST 147
Query: 129 ---PKIVKESWNKNAKASNVWQEVHDNKKK---SANWFMLNKGAVEIERPQLQFKVKVDN 182
P + + KA + W ++ S F A I RPQ QF+ VDN
Sbjct: 148 SIEPAVAAQKTQGTPKAGS-WNRTTGTPQRNMVSTRLFT----AKNIIRPQTQFREPVDN 202
Query: 183 SYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQ 240
S + F P+LKEKPN+LKPLA+L E DA ++S+ HPYE+EL + P + L+ ++P
Sbjct: 203 SAQNPFVPRLKEKPNSLKPLALLPEYDDAGNVQSYLHPYEFELLKFEPPTEQLQKQKPVL 262
Query: 241 ALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYI 300
+++T LM++ E++ Q + EL+Q +IAID+E+H+YR++ G TCL+Q+STR KDYI
Sbjct: 263 PALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYI 322
Query: 301 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
DTL LR+D+ +LN VLTD +K+ HGAD DI+WLQ+D LY+V MFDTH+A K L M
Sbjct: 323 FDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMA 382
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+YVY+ M DL
Sbjct: 383 RLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDL-LQQ 441
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDR 479
+ L+ S + S ++CK +Y KP E ++++ R + +N+Q YALR +++WRD
Sbjct: 442 QAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDA 501
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
AR +DES GYVLPNH ++Q+A+S R++ GI A N +PQ + H L I+LKAR Q
Sbjct: 502 TARSEDESYGYVLPNHKMVQIAESSSREMHGILARYNLIPQLL--HTL--LPIVLKARDQ 557
Query: 540 SLTKPV----EKLQPSLDGMKKKQQQQVSPPHD 568
L KP+ Q SL K ++ PHD
Sbjct: 558 PLVKPILEARSSTQASLPPSTKDFSSKLYCPHD 590
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%), Gaps = 4/83 (4%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNH ++Q+A+S R++ GI A N +PQ +
Sbjct: 485 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHKMVQIAESSSREMHGILARYNLIPQLL 544
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
H L I+LKAR QPL KP+
Sbjct: 545 --HTL--LPIVLKARDQPLVKPI 563
>gi|348041370|ref|NP_998833.2| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 890
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/559 (40%), Positives = 327/559 (58%), Gaps = 48/559 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V+ A ++V TK + P E + P + + ++ + +++
Sbjct: 38 DAFVKFALGTVVSATKASTGLPQGGDEYDFYRSFPGFRDSCESQGEHLLHCMSQVMQYHG 97
Query: 82 ISKSMSK----LYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
+ + LE + D+L +AND +LE + +D +G +LP+ PK +
Sbjct: 98 LRSHIRDRSRVTLLEDKFDLLVDANDVILEKVGILLDEASGLNRNQQPILPAGLQPPKTI 157
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ K S++ K KS + +L+ A I RPQL+FK K+DNS F KL
Sbjct: 158 VSSWNR--KTSDL-----SKKGKSETFRLLH--AKNILRPQLKFKEKIDNS-NTPFVSKL 207
Query: 193 KEKPNALKPLAILLE---------------------------KYDAIESFCHPYEYELDL 225
KPNA KPL +L K + FCHPY+YELD
Sbjct: 208 FVKPNAQKPLPEVLRNRLERQQRQEDLDVPPALADFIHQQRMKISEEDMFCHPYQYELDH 267
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+VP E ++ + + L L D P + + E + L +L Q E A+DLE+H+YRS+ G
Sbjct: 268 FVPLESSMEKPDIQPVLSLQDVPCKFVMKLEDLVALNEKLLQCAEFAVDLEHHSYRSFLG 327
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +DYI+D L+LR ++ +LNE T+ +I+KV HGADSDI+WLQKDFGLY+V
Sbjct: 328 LTCLMQISTRTEDYIIDVLELRSNMYILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIV 387
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDTHQA + L + R SL +LL+ YC+V+SDK +QL DWR RPLPE I+YAR DTHYL
Sbjct: 388 NMFDTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYL 447
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNN 464
L++YD M+ L AA+ +QNL+ + SR+IC K+ K +F E+ Y+ +++ LN
Sbjct: 448 LFIYDKMRTALLGAANEQQNLLQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNT 507
Query: 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
QQ A R L+ WRD+IAR +DESTGYVLPNHMLL++ + +P++ QGI ACC+PVP V++
Sbjct: 508 QQLTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELPKEPQGIIACCSPVPPLVRQ 567
Query: 525 HVLDIHAIILKARLQSLTK 543
+ ++ +I +AR L K
Sbjct: 568 QINELSLLIHQARETPLLK 586
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 154/326 (47%), Gaps = 52/326 (15%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD+IAR +DESTGYVLPNHMLL++ + +P++ QGI ACC+PVP V
Sbjct: 506 NTQQLTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELPKEPQGIIACCSPVPPLV 565
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKK-------KQQQQVSPPHDSMDCLN 682
++ + ++ +I +AR PL L+ + KKK + + + PHD+ L
Sbjct: 566 RQQINELSLLIHQARETPL------LKSEISSAKKKGPMANPERMENLLFGPHDTSLQLA 619
Query: 683 -----YKGL------PPVFPNN--IICAPSNTHLSSYDPQDKKIAQIGLF--FEDKMKIG 727
Y G +F + ++ P N A I +F FED+ +
Sbjct: 620 DNNHLYSGTGLQNSEGSLFTDEEPVVPVPMNPAFI------LSRASITIFNGFEDEEVVP 673
Query: 728 SNKY----QKIKLKTSRFETPYQRFLKSKEYAKAIQE--KVDK-----ENAEQKKIDALT 776
S + QK + FE P++ FL ++ + + K+D E ++Q K+ +L
Sbjct: 674 SKNWPVSQQKARNILESFENPFKMFLPPEDRRAHVSQAAKLDPNTKMFEISKQWKLVSLA 733
Query: 777 PQ---VKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEE----QP 829
Q K + + + +E +Q K + K VE +K R++ E +K E +P
Sbjct: 734 QQEKEAKAKEDARRQKREEKAAREQAKRDFKSSVENQKSVREQAKDEESSKKRERVSSEP 793
Query: 830 ATKKIKVEKPEESNEKTKQHKIKSEP 855
++ +K +K N + Q + P
Sbjct: 794 GSETMKSDKKRIKNSEETQEPVSQAP 819
>gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 883
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/559 (40%), Positives = 327/559 (58%), Gaps = 48/559 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V+ A ++V TK + P E + P + + ++ + +++
Sbjct: 31 DAFVKFALGTVVSATKASTGLPQGGDEYDFYRSFPGFRDSCESQGEHLLHCMSQVMQYHG 90
Query: 82 ISKSMSK----LYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
+ + LE + D+L +AND +LE + +D +G +LP+ PK +
Sbjct: 91 LRSHIRDRSRVTLLEDKFDLLVDANDVILEKVGILLDEASGLNRNQQPILPAGLQPPKTI 150
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ K S++ K KS + +L+ A I RPQL+FK K+DNS F KL
Sbjct: 151 VSSWNR--KTSDL-----SKKGKSETFRLLH--AKNILRPQLKFKEKIDNS-NTPFVSKL 200
Query: 193 KEKPNALKPLAILLE---------------------------KYDAIESFCHPYEYELDL 225
KPNA KPL +L K + FCHPY+YELD
Sbjct: 201 FVKPNAQKPLPEVLRNRLERQQRQEDLDVPPALADFIHQQRMKISEEDMFCHPYQYELDH 260
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+VP E ++ + + L L D P + + E + L +L Q E A+DLE+H+YRS+ G
Sbjct: 261 FVPLESSMEKPDIQPVLSLQDVPCKFVMKLEDLVALNEKLLQCAEFAVDLEHHSYRSFLG 320
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +DYI+D L+LR ++ +LNE T+ +I+KV HGADSDI+WLQKDFGLY+V
Sbjct: 321 LTCLMQISTRTEDYIIDVLELRSNMYILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIV 380
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDTHQA + L + R SL +LL+ YC+V+SDK +QL DWR RPLPE I+YAR DTHYL
Sbjct: 381 NMFDTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYL 440
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNN 464
L++YD M+ L AA+ +QNL+ + SR+IC K+ K +F E+ Y+ +++ LN
Sbjct: 441 LFIYDKMRTALLGAANEQQNLLQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNT 500
Query: 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
QQ A R L+ WRD+IAR +DESTGYVLPNHMLL++ + +P++ QGI ACC+PVP V++
Sbjct: 501 QQLTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELPKEPQGIIACCSPVPPLVRQ 560
Query: 525 HVLDIHAIILKARLQSLTK 543
+ ++ +I +AR L K
Sbjct: 561 QINELSLLIHQARETPLLK 579
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 154/326 (47%), Gaps = 52/326 (15%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD+IAR +DESTGYVLPNHMLL++ + +P++ QGI ACC+PVP V
Sbjct: 499 NTQQLTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELPKEPQGIIACCSPVPPLV 558
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKK-------KQQQQVSPPHDSMDCLN 682
++ + ++ +I +AR PL L+ + KKK + + + PHD+ L
Sbjct: 559 RQQINELSLLIHQARETPL------LKSEISSAKKKGPMANPERMENLLFGPHDTSLQLA 612
Query: 683 -----YKGL------PPVFPNN--IICAPSNTHLSSYDPQDKKIAQIGLF--FEDKMKIG 727
Y G +F + ++ P N A I +F FED+ +
Sbjct: 613 DNNHLYSGTGLQNSEGSLFTDEEPVVPVPMNPAFIL------SRASITIFNGFEDEEVVP 666
Query: 728 SNKY----QKIKLKTSRFETPYQRFLKSKEYAKAIQE--KVDK-----ENAEQKKIDALT 776
S + QK + FE P++ FL ++ + + K+D E ++Q K+ +L
Sbjct: 667 SKNWPVSQQKARNILESFENPFKMFLPPEDRRAHVSQAAKLDPNTKMFEISKQWKLVSLA 726
Query: 777 PQ---VKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEE----QP 829
Q K + + + +E +Q K + K VE +K R++ E +K E +P
Sbjct: 727 QQEKEAKAKEDARRQKREEKAAREQAKRDFKSSVENQKSVREQAKDEESSKKRERVSSEP 786
Query: 830 ATKKIKVEKPEESNEKTKQHKIKSEP 855
++ +K +K N + Q + P
Sbjct: 787 GSETMKSDKKRIKNSEETQEPVSQAP 812
>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 550
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/558 (41%), Positives = 330/558 (59%), Gaps = 52/558 (9%)
Query: 25 LVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNI- 82
L+Q ++V TK + P + E + + D ++ + ++K
Sbjct: 6 LLQYGLGTVVSATKASAGLPQAGDEYDFYRSFTGFQDFCESQGDNLLRCMSQIMKHHGCR 65
Query: 83 SKSMSKLYLEGQKD---ILTEANDKLLESINTRIDVMAG---TKTPSVLPSQ---PKIVK 133
S M++ L GQ+D ++ ++ND +LE + +D G T+ P V+P+ PKIV
Sbjct: 66 SHMMNQNTLTGQEDRFDLMVDSNDAILERVGILLDEADGVNRTQGP-VMPAGFQPPKIVV 124
Query: 134 ESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK 193
SWN+ S +S + +L+ A + RPQL+FK KVDNS F PK+
Sbjct: 125 SSWNRKGSGSG---------GRSEMFRLLH--AKNVARPQLKFKEKVDNS-NTPFIPKIF 172
Query: 194 EKPNALKPL--------------------AILLE-------KYDAIESFCHPYEYELDLY 226
KPNA+KPL A L + + + ++ HPY+YELD
Sbjct: 173 IKPNAVKPLPSYFTNKQMHKEKPEDLDVPAALADFIHQQRTQENVVDMCAHPYQYELDHL 232
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
+ E L EP+ P+++T IT E++ L +L Q E A+DLE+H+YRS+ G
Sbjct: 233 MIPESLLSKSEPQLYKPVAETKCSFITTLEELAALNEKLCQLSEFAVDLEHHSYRSFLGI 292
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 346
TCLMQISTR++D+I+DTL+LR ++ +LNE TD IVKVFHGADSDI+WLQ+DFGLYVV
Sbjct: 293 TCLMQISTREEDFIIDTLELRSEMYILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVR 352
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+FDTHQA + L + R SL +LL H+C+V SDK +QL DWR RPLPE +QYAR DTHYLL
Sbjct: 353 LFDTHQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARADTHYLL 412
Query: 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQ 465
Y+YDC++ L HG+ L+ S + SR+I KY KP+F EE Y+ + R N Q
Sbjct: 413 YIYDCVRAQLLDFNHGQPGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKKSFNTQ 472
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
Q A R L+ WRD++AR +DESTGYVLP HM++++++ +P++ QGI ACCNPVP V++
Sbjct: 473 QLAAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQ 532
Query: 526 VLDIHAIILKARLQSLTK 543
V ++H ++ +AR L K
Sbjct: 533 VNELHLLVQQAREMPLLK 550
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R L+ WRD++AR +DESTGYVLP HM++++++ +P++ QGI ACCNPVP V
Sbjct: 470 NTQQLAAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELPKEPQGIIACCNPVPPLV 529
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ V ++H ++ +AR PL K
Sbjct: 530 RQQVNELHLLVQQAREMPLLK 550
>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 947
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/561 (39%), Positives = 332/561 (59%), Gaps = 17/561 (3%)
Query: 1 MSDTNQEIPKSDEANKELSKTFDVLVQ---NAYKSIVKCTKTAQSFPSTHENSLLIASPN 57
M D QE P+ + E+ + + Q + +K +++ K + + PS + S +
Sbjct: 1 MGDKAQEHPEGASKDSEIIPGYSSMEQFTKDGFKVLMEAIKHSNALPSGRDWDFYNISDS 60
Query: 58 YISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMA 117
+ + + V+ L++ +++ ++ ++ L+ + +++ EAND +LE + ID M
Sbjct: 61 FKEIMKVEGNHVLRLMNQVMRCNDLDSNLRNRVLDEKIELVIEANDIILEKVANNIDEMN 120
Query: 118 GTKTPSVLP------SQPKIVKESWNKNAKAS-NVWQEVHDNKKKSANWFMLNKGAVEIE 170
G + V P S V SWN+ A+ V V ++ ++ + K +
Sbjct: 121 GIRKTVVAPVVLQTVSAQLPVNGSWNRQTAATVTVSSVVPESSGQNCIKLITAKNII--- 177
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE 230
RPQ FK ++DN + + P++ EKPN+LKPLAI LE+Y+ + + HPYE+ELD + P
Sbjct: 178 RPQKFFKDQIDNRNKTPWSPRITEKPNSLKPLAIFLEEYEDRQEYSHPYEFELDRFQPTP 237
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLM 290
L E+ LSDTPL+ I + EQ+ +LV L+ +E ++D+E+H+YRS+ G TCL+
Sbjct: 238 SQLIDEKSVPPKSLSDTPLIEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLI 297
Query: 291 QISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
QIST DKDY++D L LR+ L +LNEV T IVK+FHGAD DI+WLQ+D LYVV MFDT
Sbjct: 298 QISTEDKDYLIDALALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDT 357
Query: 351 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 410
HQA K L P SLA+L+K +C+V +K FQL DWR RPLP+ YAR DTHYL+Y+Y
Sbjct: 358 HQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYK 417
Query: 411 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYA 469
MK +L + L+ S S +CK +Y KP+ +E+ ++ ++R + +N+Q YA
Sbjct: 418 MMKRELLHKTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDNRQMYA 477
Query: 470 LRE---LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
L+E S YVLPNHMLLQ+++ +PR++QGI ACCNP+P V+ H+
Sbjct: 478 LKEXXXXXXXXXXXXXXXXXSCSYVLPNHMLLQISELLPREMQGILACCNPIPPLVRSHL 537
Query: 527 LDIHAIILKARLQSLTKPVEK 547
L++H IILKAR Q L K + K
Sbjct: 538 LELHQIILKAREQPLEKAILK 558
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 570 NNQQKYALRELYKWRDRIARDKDE---STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 626
+N+Q YAL+E S YVLPNHMLLQ+++ +PR++QGI ACCNP+P
Sbjct: 471 DNRQMYALKEXXXXXXXXXXXXXXXXXSCSYVLPNHMLLQISELLPREMQGILACCNPIP 530
Query: 627 QTVKEHVLDIHAIILKARLQPLTKPVEKLQPS---LDGMKKKKQQQQVSPPHDSMDCLNY 683
V+ H+L++H IILKAR QPL K + K L M K + PHD +
Sbjct: 531 PLVRSHLLELHQIILKAREQPLEKAILKETSGRGVLKEMSKVNMDSVLHCPHDLTKTNEF 590
Query: 684 KGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFET 743
+ P N N ++ D +K + +F D+ ++ KL TS + +
Sbjct: 591 RDDLPTLLQNEQYKAENKRVAQVDLAIEKPSSYSIFNSDQGFKPGEAFK--KLHTSAYLS 648
Query: 744 PYQRF-------LKSKEYAKAIQEKVDKENAEQ 769
PY+R+ + E AKA +EK +K + E+
Sbjct: 649 PYERYKLVKPFVVAEDEAAKAQKEKDEKTDDER 681
>gi|431906334|gb|ELK10531.1| Exosome component 10 [Pteropus alecto]
Length = 883
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 232/561 (41%), Positives = 328/561 (58%), Gaps = 56/561 (9%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +L +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRKKVTELEDKFDLLVDTNDGIL------LDEASGVNKNQQPVLPAGLQVPKTI 146
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 147 VSSWNRKAGE-------YSKKSKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 196
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 197 FIKPNAQKPLPQALSKERRDRPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 256
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ P+ +TP ++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 257 DHFTPPDSVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSF 316
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 317 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 376
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 377 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLNYARDDTH 436
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 437 YLLYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 496
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 497 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 556
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 557 RQQINEMHLLIQQAREMPLLK 577
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 173/397 (43%), Gaps = 75/397 (18%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 497 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 556
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCLN 682
++ + ++H +I +AR PL K G+KK ++ + + PHD +
Sbjct: 557 RQQINEMHLLIQQAREMPLLK-----SEVAAGVKKSGPLPNPERLENVLFGPHDCSHTPS 611
Query: 683 YKGLPPVFPNNIICAPSNTHLSSYDPQDKK------------IAQIGLFFEDK------- 723
G P + N P+ + + +K A I LF E
Sbjct: 612 -DGCPVISTNGSGPVPAQKQTGLFPGEREKEEALLDTKCLIATAVITLFNEPSAEETGQG 670
Query: 724 -MKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTE 782
+ + K Q I FE P++ FL S E+ I + K +
Sbjct: 671 LLTVAQKKAQNI---MESFENPFRMFLPSVEHHAHISQAA-----------------KFD 710
Query: 783 PEENV-KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEE 841
P + +I+ + Q++ + KE E K+K + R++ EE AT K V ++
Sbjct: 711 PSSKIYEISNRWKLASQVQVQ-KESKETAKKKAAEQTAARDQANEEYKATAKQAVSVRQQ 769
Query: 842 S---NEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTV 898
+ N K+ + S+P+ + +EK KR KI +PK+ D +
Sbjct: 770 AALENTARKRERTASDPRTTEQKQEK--------KRLKISKKPKDPDPPEK--------- 812
Query: 899 DFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKR 935
DF+ +Y+K N K K NK+ + K+
Sbjct: 813 DFTPYDYSKSDFTAFAGNSKSKPSQFDPNKQTPSGKK 849
>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
gi|296479174|tpg|DAA21289.1| TPA: exosome component 10 [Bos taurus]
Length = 702
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A ++V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ P+ +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPQTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADLIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ EP+ P+ +TP ++ +++ +L +L + QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPDSVLQKPEPQLYRPVGETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWERGNEQPTQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
Length = 705
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 10 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 69
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 70 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 129
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 130 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 179
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 180 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 239
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 240 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 299
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 300 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 359
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 360 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 419
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 420 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 479
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 480 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 539
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 540 RQQINEMHLLIQQAREMPLLK 560
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 480 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 539
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 540 RQQINEMHLLIQQAREMPLLK 560
>gi|354502292|ref|XP_003513221.1| PREDICTED: exosome component 10 isoform 2 [Cricetulus griseus]
Length = 860
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 327/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D Q A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFFQFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNILRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPQALSKERRERPQDRPEDLDVPPALADLIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + + L+ +P+ P+ +TP ++ +Q+ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTLPDSVLQKPQPQLYRPVEETPCHFVSTLDQLVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFILDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
Length = 885
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIYQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPPDSVLQKPQPQLYRPVEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LT+ IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRMEDFIIDTLELRSDMYILNESLTNPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWDRGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 65/367 (17%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKP-----VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNY- 683
++ + ++H +I +AR PL K V+K P L G ++ + + PH DC +
Sbjct: 563 RQQINEMHLLIQQAREMPLLKSEVATGVKKSGP-LPGA--ERLENVLFGPH---DCSHAP 616
Query: 684 -KGLPPVFPNNIICAPSNTHLSSYDPQDKKI--------AQIGLFFE--------DKMKI 726
G P + N + + +L + +D + A I LF E + +
Sbjct: 617 PDGYPIIPTNGSVPVQNQANLFPDEKEDNLLGTTCVIATAVITLFNEPSAEDNKKGPLTV 676
Query: 727 GSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEEN 786
K Q I FE P++ FL S + + + K +P
Sbjct: 677 AQKKAQNI---MESFENPFRMFLPSLGHRAPVSQA-----------------AKFDPSTK 716
Query: 787 VKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEES---N 843
+ L QI+ +KE E +K+K + RE+ KE A + + +++ N
Sbjct: 717 IYEISNRWKLAQIQV-QKESKETDKKKAAEQTAAREQAKEACGAVAEQAISVRQQAALEN 775
Query: 844 EKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKV 903
K+ + S+P+ PE+ EK KR KI +PK+ G + D+S+
Sbjct: 776 AAKKRERTTSDPR-------TPEQKQEK-KRLKISKKPKD----PGPPEKDFTPYDYSQS 823
Query: 904 NYNKYMA 910
++ +
Sbjct: 824 DFKAFAG 830
>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
Length = 860
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 329/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIYQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPPDSVLQKPQPQLYRPVEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LT+ IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRMEDFIIDTLELRSDMYILNESLTNPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLELWDRGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>gi|354502290|ref|XP_003513220.1| PREDICTED: exosome component 10 isoform 1 [Cricetulus griseus]
Length = 885
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 327/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D Q A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFFQFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNILRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPQALSKERRERPQDRPEDLDVPPALADLIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + + L+ +P+ P+ +TP ++ +Q+ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTLPDSVLQKPQPQLYRPVEETPCHFVSTLDQLVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFILDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 186/406 (45%), Gaps = 67/406 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCLN 682
++ + ++H +I +AR PL K + G+KK ++ + + PH DC +
Sbjct: 563 RQQINEMHLLIQQAREMPLLK-----SEAAAGVKKSGPLPIAERLENDLFGPH---DCSH 614
Query: 683 YKGLPPVFPNNIICAPSNTHL---------------SSYDPQD-KKIAQIGLFFE----- 721
P+N P++ + +S D + A I LF E
Sbjct: 615 AP------PDNYPITPTDGSVPLQKQPSLFAEGKEGTSLDARCLLATAVITLFSEPSAEE 668
Query: 722 ---DKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQE--KVDKENA--EQKKIDA 774
+ + K Q I FE P++ FL S E+ I + K D + E
Sbjct: 669 SGKSPLTVAQKKAQNI---MESFENPFRMFLPSLEHKAHISQAAKFDPSSKIYEISNRWK 725
Query: 775 LTPQVKTEPEENV--KITQEPVVLKQIKSEEKEKVEMEKE---KRKKILREREEEKEEQP 829
L QV+ EP+E K+ ++ KQ + EE E +E+ +++ +L +++E
Sbjct: 726 LASQVQKEPKEAATKKVAEQTAARKQAQ-EESEATALEQAIPVRQQAVLENAAKKRERAT 784
Query: 830 ATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKEN-DSSK 888
+ + +K E+ K+ + +P + S +S+ + KS+P D +K
Sbjct: 785 SDLRTTEQKQEKKRLKSSKKPKDPDPAGREFSPYDYSQSDFRAFAGDSKSKPSSQFDPNK 844
Query: 889 GKSGG--TISTVDFSKVNYNKYMAKP-GKSNQKKKGKGGKQNKKKK 931
G ++ F + NK M+ P GKS+ +G + N K+
Sbjct: 845 PAPSGKKCVAVKKFKQSVGNKSMSFPAGKSD-----RGFRHNWPKR 885
>gi|444728183|gb|ELW68647.1| Serine/threonine-protein kinase mTOR [Tupaia chinensis]
Length = 3780
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/566 (40%), Positives = 330/566 (58%), Gaps = 50/566 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A +++ TK + P S E + P + + D+++ + +++
Sbjct: 2722 DSFVKFALGAVLAVTKASGGLPQSGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 2781
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 2782 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTI 2841
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 2842 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLKFREKIDNS-NTPFLPKI 2891
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 2892 FIKPNAQKPLPHALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 2951
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D ++P + L+ P+ P+ +TP ++ +++ +L +L +E A+DLE+H+YRS+
Sbjct: 2952 DHFIPPDSVLQRPHPQIYRPVEETPCHFVSSLDELVELNEKLLSCREFAVDLEHHSYRSF 3011
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE TD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 3012 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESFTDPAIVKVFHGADSDIEWLQKDFGLY 3071
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 3072 VVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTH 3131
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 3132 YLLYIYDKMRLELWERGGNQPVQLQVVWQRSRDICLKKFLKPIFTDESYLELYRKQKKHL 3191
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 3192 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 3251
Query: 523 KEHVLDIHAIILKARLQSLTKPVEKL 548
++ + ++H +I +AR L K +E +
Sbjct: 3252 RQQINEMHLLIQQAREMPLLKRLENI 3277
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 65/334 (19%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 3192 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 3251
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPV 689
++ + ++H +I +AR PL K +E + + PHD + G P +
Sbjct: 3252 RQQINEMHLLIQQAREMPLLKRLENI---------------LFGPHDCSHAPS-DGCPVI 3295
Query: 690 FPNNIICAPSNTHLSSYDPQDKKI--------AQIGLFFE--------DKMKIGSNKYQK 733
+ + T L ++ + A I LF E + + K Q
Sbjct: 3296 PASGSVPVQKQTSLFPDQKEETLLDTGCLIATAVITLFSEPNVEENEKGPLTVAQKKAQN 3355
Query: 734 IKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENV-KITQE 792
I FE P++ FL S+E+ I + K +P + +I+
Sbjct: 3356 I---MESFENPFRMFLPSQEHRAHISQA-----------------AKFDPSSKIYEISNH 3395
Query: 793 PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEES---NEKTKQH 849
+ Q++ +++ K KE +K + E+ KEE AT + V +++ N K+
Sbjct: 3396 WKLANQVQVQKESKEAARKEAAEKTAAQ-EQAKEEYRATAEQAVSVRQQAALENAAKKRE 3454
Query: 850 KIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
+ S+P+ + +EK KR +I +PK+
Sbjct: 3455 RATSDPRTTEQKQEK--------KRLRISKKPKD 3480
>gi|432098121|gb|ELK28008.1| Exosome component 10 [Myotis davidii]
Length = 876
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/557 (41%), Positives = 326/557 (58%), Gaps = 53/557 (9%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V+ A S+V TK + P E + P + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQVFCETQGDRLLQCMSKVMQYHG 92
Query: 82 ISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIVKESW 136
++ + +TE DK + + +D +G VLP+ PK + SW
Sbjct: 93 CRSNIK------DRSKVTELEDKF-DLLGILLDEASGVNKNQQPVLPTGLQVPKTIVSSW 145
Query: 137 NKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKP 196
N+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+ KP
Sbjct: 146 NRKAGE-------YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFRPKIFIKP 195
Query: 197 NALKPLAILLEK-------------------YDAI----------ESFCHPYEYELDLYV 227
NA KPL L + D I + F HPY+YELD +
Sbjct: 196 NAQKPLPQALSRERRECPQDRPEDLDVPAALADFIHQQRTQQVEQDMFAHPYQYELDHFT 255
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
P + L+ +P+ P+ +TP ++ +++ +L +L + QE AIDLE+H+YRS+ G T
Sbjct: 256 PPDSVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLKCQEFAIDLEHHSYRSFLGLT 315
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CLMQISTR +D+IVDTL+LR DL +LNE LTD IVKVFHGADSDI+WLQKDFGLYVV M
Sbjct: 316 CLMQISTRTEDFIVDTLELRSDLYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNM 375
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDTHQA + L + R SL +LLKHYC+V+S+K +QL DWR RPLPE + YAR DTHYLLY
Sbjct: 376 FDTHQAARLLNLGRHSLDHLLKHYCNVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLY 435
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQQ 466
+YD M+L+L +G+ + + SR+IC K+ KP+F +E Y+ ++R LN QQ
Sbjct: 436 IYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 495
Query: 467 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ +
Sbjct: 496 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQI 555
Query: 527 LDIHAIILKARLQSLTK 543
++H +I +AR L K
Sbjct: 556 NEMHLLIQQARDMPLLK 572
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 166/375 (44%), Gaps = 63/375 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 492 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 551
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKK-------KKQQQQVSPPHDSMDCLN 682
++ + ++H +I +AR PL K G+KK ++ + + PHD +
Sbjct: 552 RQQINEMHLLIQQARDMPLLK-----SEVAAGVKKSGPLPNPERLENVLFGPHDCSHAPS 606
Query: 683 YKGLPPVFPNNIICAPSNTHLSSYDPQDKKI---------AQIGLFFEDK--------MK 725
G N + L +D+ + A I LF E +
Sbjct: 607 -DGYAVTPANGPVPVQKQASLFPAGGEDEALLDSKCLIATAVITLFNEPSAEEHGKAPLT 665
Query: 726 IGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKT-EPE 784
+ K Q I FE P++ FL S E+ I ++ K D P K E
Sbjct: 666 VAQKKAQNI---MESFENPFRMFLPSIEHHAHI--------SQAAKFD---PSSKIYEIS 711
Query: 785 ENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNE 844
K+ + V K+ K K+K + R + E + E+ ++++ E N
Sbjct: 712 NRWKLASQVQVQKESKETAKKKAAEQTAARNQATEEYKAAAEQ---AVSVRLQAALE-NA 767
Query: 845 KTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVN 904
K+ + S+P + +EK KR K+ +PK+ D+ + + D+SK +
Sbjct: 768 AMKRERATSDPGTTEQKQEK--------KRLKVSKKPKDPDAPEKD----FTPYDYSKSD 815
Query: 905 YNKYM--AKPGKSNQ 917
+ + +KP S+Q
Sbjct: 816 FKAFAGSSKPKPSSQ 830
>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
Length = 885
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 233/562 (41%), Positives = 327/562 (58%), Gaps = 48/562 (8%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
K D V+ ++V TK + S P E L + P + D ++ + ++
Sbjct: 31 KDVDAFVKYGLGTVVAATKASASLPQVGDEYDLYRSFPGFQEFCETQGDGLLHCMSQIMH 90
Query: 79 TQNISKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---P 129
M +KL LE + D++ +AND +LE + +D AG V+P+ P
Sbjct: 91 HHGCRAHMRDRNKLTGLEERFDLVVDANDVILEKVGILLDDAAGVNRSQQPVMPAGFQPP 150
Query: 130 KIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
KIV SWN+ S +S+ F L + A + RPQL+F+ KVDNS F
Sbjct: 151 KIVVSSWNRKGGDSG--------SGRSSETFRLLQ-AKNVTRPQLKFREKVDNS-NTPFT 200
Query: 190 PKLKEKPNALKPL-AILLEKY----------------DAI----------ESFCHPYEYE 222
PK+ KPNA KPL + K+ D I + F HPY+YE
Sbjct: 201 PKIIIKPNARKPLPSYFTNKHIRKERPEDLDVPAALADFIHQQRTQEHVEDMFAHPYQYE 260
Query: 223 LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRS 282
LD E+ L EP+ PL++T I E + + +L + E A+DLE+H+YRS
Sbjct: 261 LDHLALPENLLSKPEPQMYKPLAETKCSFIDNLEDLVAVNEKLTKTSEFAVDLEHHSYRS 320
Query: 283 YQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGL 342
+ G TCLMQISTRD+D+I+DTL+LR +L +LNE TD IVKVFHGADSDI+WLQKD GL
Sbjct: 321 FLGITCLMQISTRDEDFIIDTLELRSELYILNEAFTDPAIVKVFHGADSDIEWLQKDLGL 380
Query: 343 YVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDT 402
Y+V MFDTHQA + L + R SL +LLK +C+VDSDK +QL DWR RPLP+ QYAR DT
Sbjct: 381 YIVNMFDTHQASRTLNLGRHSLDHLLKLFCNVDSDKRYQLADWRIRPLPDEMFQYARADT 440
Query: 403 HYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-AL 461
HYLLYVYD +++DL +G+ L+ + S++I KY KP+F ++ YM++ R +
Sbjct: 441 HYLLYVYDRLRVDLWEVGNGQPALLQMVWHKSKDISLKKYMKPLFTDDSYMDLLRKQKKV 500
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 521
N QQ A R LY WRD++AR +DESTGYVLPNHM+++++ +P++ QGI ACCNPVP
Sbjct: 501 FNTQQLTAFRLLYGWRDKLARQEDESTGYVLPNHMMIKISDILPKEPQGIIACCNPVPPL 560
Query: 522 VKEHVLDIHAIILKARLQSLTK 543
V++ + ++H ++ +AR L K
Sbjct: 561 VRQQINELHILVQQAREMPLLK 582
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 21/210 (10%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A R LY WRD++AR +DESTGYVLPNHM+++++ +P++ QGI ACCNPVP V
Sbjct: 502 NTQQLTAFRLLYGWRDKLARQEDESTGYVLPNHMMIKISDILPKEPQGIIACCNPVPPLV 561
Query: 630 KEHVLDIHAIILKARLQPLTKP--VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLP 687
++ + ++H ++ +AR PL K V + +L +KK + + PHD+ ++ +P
Sbjct: 562 RQQINELHILVQQAREMPLLKAEIVADKKKALTPIKKP--EIPLFGPHDT-SRVSESDIP 618
Query: 688 PVFPNNIICAPSNTHLSSYDPQDKKI-----------AQIGLFFEDKMKIGSN---KYQK 733
PN + + L S + Q +K+ A+I LF ED +K + QK
Sbjct: 619 SCTPNEL--STKKGALFSDEEQGEKVDMHKMTGLVVSAKITLFEEDTVKDPGHLTVAQQK 676
Query: 734 IKLKTSRFETPYQRFLKSKEYAKAIQEKVD 763
F+ P++ +L S + + K D
Sbjct: 677 ACRVVESFQNPFRMYLPSNDIHISKNAKFD 706
>gi|126328718|ref|XP_001364197.1| PREDICTED: exosome component 10 isoform 1 [Monodelphis domestica]
Length = 861
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/563 (40%), Positives = 330/563 (58%), Gaps = 49/563 (8%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
K D V+ A S++ TK + P + E + P + + D+++ + +++
Sbjct: 7 KDADSFVKFALGSVLAATKASNGLPQAGDEYDFYRSFPGFRAFCETQGDRLLQCMSKVMQ 66
Query: 79 TQNIS---KSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---P 129
K SK+ LE + D+L ++ND +LE + +D +G +LP+ P
Sbjct: 67 YHGCRSHIKDRSKVTELEDKFDLLVDSNDVILERVGILLDEASGLNKNQQPILPAGMQVP 126
Query: 130 KIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
+ + SWN+ A N KK+S + +L+ A I RPQL+F+ KVDNS F
Sbjct: 127 QTIVSSWNRKAGEYN-------KKKQSETFRLLH--AKNIIRPQLKFREKVDNS-NTPFV 176
Query: 190 PKLKEKPNALKPLAILLEKYDAI----------------------------ESFCHPYEY 221
PK+ KPNA KPLA L K + F HPY+Y
Sbjct: 177 PKIFIKPNAQKPLAQALTKERRERQERPEDLDVPPALADFLYQQRTQQIEQDMFAHPYQY 236
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
ELD + ++ L+ + + P+ +TP +T + + +L +L ++ +DLE+H+YR
Sbjct: 237 ELDHFAIPDEVLQKPQIQMYKPVGETPCHFVTTLDALVELNEKLLNCKDFGVDLEHHSYR 296
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S+ G TCLMQISTR +D+I+DTL+LR DL +LNE TD +IVKVFHGAD DI+WLQKDFG
Sbjct: 297 SFLGLTCLMQISTRTEDFIIDTLELRSDLYILNESFTDPSIVKVFHGADMDIEWLQKDFG 356
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LYVV MFDTHQA + L + R SL +LLK YC+V+S+K +QL DWR RPLPE YAR D
Sbjct: 357 LYVVNMFDTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMFNYARHD 416
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-A 460
THYLLY+YD M+ DL A+G+ + + S++IC ++ KP+F E+ Y+ ++R
Sbjct: 417 THYLLYIYDKMRSDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQKK 476
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
LN QQ A + LY WRDR AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP
Sbjct: 477 HLNTQQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPP 536
Query: 521 TVKEHVLDIHAIILKARLQSLTK 543
V++ + ++H +I +AR L K
Sbjct: 537 LVRQQINEMHLLIQQAREMPLLK 559
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 170/389 (43%), Gaps = 72/389 (18%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + LY WRDR AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 479 NTQQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 538
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQ-------QVSPPHDSMDCLN 682
++ + ++H +I +AR PL K G+KK + Q + PHD
Sbjct: 539 RQQINEMHLLIQQAREMPLLK-----SEVASGVKKNRPQSAPERIENALFGPHD------ 587
Query: 683 YKGLPP-VFPNNIICAPS----NTHLSSYDPQDKKIAQIGLFF----------------- 720
Y PP + N P+ L S +++ ++ +G
Sbjct: 588 YSRAPPDDYLNVTATGPAPLQKRATLFSDKNENETMSDVGCLIATAVITLFSEPSAGEEN 647
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK 780
E ++ K Q I FE P++ +L S+E + ++ K D ++
Sbjct: 648 EGRLTAAQKKAQSI---MESFENPFRMYLPSEENHAYV--------SQSAKFDPMSKIY- 695
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
E K+ + QIK E +E + + E+ RE+ KEE A + + +
Sbjct: 696 -EISNRWKLASQ----VQIKKEAQEALRKKAEQTAA----REQAKEEYKAATQQVISVRQ 746
Query: 841 ES---NEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTIST 897
++ N K+ ++ SEP E PE EK KR K P+E + K + S
Sbjct: 747 QAVLENATKKRERMGSEP-------ETPEPKQEK-KRLKASQPPQEQEPPKEFTPYDYSK 798
Query: 898 VDFSKVNYNKYMAKPGKSNQKKKGKGGKQ 926
DF + N + + + K+ GK+
Sbjct: 799 SDFKAFSGNSKAKQSAQFDPNKQDPPGKK 827
>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/502 (43%), Positives = 301/502 (59%), Gaps = 54/502 (10%)
Query: 81 NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK-------TPSVLPSQPKIVK 133
N + S S + ++ + L EAND LLE ++T +D +G +P+V P +
Sbjct: 57 NRNTSCSNVDVDDLYESLVEANDTLLEEVDTSLDEASGLSKNRKPILSPAVRQGGPMV-- 114
Query: 134 ESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK 193
SWN+ + DN K N+ +L A I+RPQ++FK K+DNS F P +K
Sbjct: 115 SSWNRKTR---------DNNNKDGNFRLL--LAKNIQRPQMKFKDKIDNS-NTPFIPIIK 162
Query: 194 EKPNALKPLAILLEKY--------------------------------DAIESFCHPYEY 221
KPNALKPL L + + HPYE+
Sbjct: 163 YKPNALKPLDQGLASRGRGQEVQNPEDLSVPSVIADFIHQQRVNSASENPVNRISHPYEF 222
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
EL + P LK + + L DTP ++ EQ+ L +L + QE A+DLE+H+YR
Sbjct: 223 ELQRFEPPATQLKEAKEQLYDSLEDTPFTLVETVEQLESLSQKLMEAQEFAVDLEHHSYR 282
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S+ G+ CLMQISTRD D++VDTL+LR DL +LNE T+ NI+KVFHGAD D+ WLQ+DFG
Sbjct: 283 SFLGFVCLMQISTRDHDFLVDTLELRNDLHLLNESFTNPNILKVFHGADMDVGWLQRDFG 342
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
+YVV MFDT QA + L + R SLA+LLK +C V +DK +QL DWR RPLPE I+YAR D
Sbjct: 343 IYVVNMFDTGQASRVLALERFSLAFLLKKFCGVTADKQYQLADWRIRPLPEEMIRYARED 402
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF-RSHA 460
THYLLY++D ++ +L + NL+LS ++ S +C+ YEKP+F E YMN++ +
Sbjct: 403 THYLLYIHDRLRNELIRTGNENNNLLLSVYSRSTEVCQKHYEKPLFTSESYMNLYTKQRR 462
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
LN Q A R LY WRD IAR +DES GYVLPNHML +A+++PR+ QG+ ACCNPVP
Sbjct: 463 PLNPVQLRAFRALYAWRDTIARREDESYGYVLPNHMLFTIAETLPREPQGVLACCNPVPT 522
Query: 521 TVKEHVLDIHAIILKARLQSLT 542
VK++V ++H +IL++R S T
Sbjct: 523 LVKQYVNEVHQLILQSRDASTT 544
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 57/75 (76%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q A R LY WRD IAR +DES GYVLPNHML +A+++PR+ QG+ ACCNPVP V
Sbjct: 465 NPVQLRAFRALYAWRDTIARREDESYGYVLPNHMLFTIAETLPREPQGVLACCNPVPTLV 524
Query: 630 KEHVLDIHAIILKAR 644
K++V ++H +IL++R
Sbjct: 525 KQYVNEVHQLILQSR 539
>gi|126328720|ref|XP_001364275.1| PREDICTED: exosome component 10 isoform 2 [Monodelphis domestica]
Length = 836
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/563 (40%), Positives = 330/563 (58%), Gaps = 49/563 (8%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
K D V+ A S++ TK + P + E + P + + D+++ + +++
Sbjct: 7 KDADSFVKFALGSVLAATKASNGLPQAGDEYDFYRSFPGFRAFCETQGDRLLQCMSKVMQ 66
Query: 79 TQNIS---KSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---P 129
K SK+ LE + D+L ++ND +LE + +D +G +LP+ P
Sbjct: 67 YHGCRSHIKDRSKVTELEDKFDLLVDSNDVILERVGILLDEASGLNKNQQPILPAGMQVP 126
Query: 130 KIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
+ + SWN+ A N KK+S + +L+ A I RPQL+F+ KVDNS F
Sbjct: 127 QTIVSSWNRKAGEYN-------KKKQSETFRLLH--AKNIIRPQLKFREKVDNS-NTPFV 176
Query: 190 PKLKEKPNALKPLAILLEKYDAI----------------------------ESFCHPYEY 221
PK+ KPNA KPLA L K + F HPY+Y
Sbjct: 177 PKIFIKPNAQKPLAQALTKERRERQERPEDLDVPPALADFLYQQRTQQIEQDMFAHPYQY 236
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
ELD + ++ L+ + + P+ +TP +T + + +L +L ++ +DLE+H+YR
Sbjct: 237 ELDHFAIPDEVLQKPQIQMYKPVGETPCHFVTTLDALVELNEKLLNCKDFGVDLEHHSYR 296
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S+ G TCLMQISTR +D+I+DTL+LR DL +LNE TD +IVKVFHGAD DI+WLQKDFG
Sbjct: 297 SFLGLTCLMQISTRTEDFIIDTLELRSDLYILNESFTDPSIVKVFHGADMDIEWLQKDFG 356
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LYVV MFDTHQA + L + R SL +LLK YC+V+S+K +QL DWR RPLPE YAR D
Sbjct: 357 LYVVNMFDTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMFNYARHD 416
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-A 460
THYLLY+YD M+ DL A+G+ + + S++IC ++ KP+F E+ Y+ ++R
Sbjct: 417 THYLLYIYDKMRSDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQKK 476
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
LN QQ A + LY WRDR AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP
Sbjct: 477 HLNTQQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPP 536
Query: 521 TVKEHVLDIHAIILKARLQSLTK 543
V++ + ++H +I +AR L K
Sbjct: 537 LVRQQINEMHLLIQQAREMPLLK 559
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 164/358 (45%), Gaps = 60/358 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + LY WRDR AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 479 NTQQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 538
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQ-------QVSPPHDSMDCLN 682
++ + ++H +I +AR PL K G+KK + Q + PHD
Sbjct: 539 RQQINEMHLLIQQAREMPLLK-----SEVASGVKKNRPQSAPERIENALFGPHD------ 587
Query: 683 YKGLPP-VFPNNIICAPS----NTHLSSYDPQDKKIAQIGLFF----------------- 720
Y PP + N P+ L S +++ ++ +G
Sbjct: 588 YSRAPPDDYLNVTATGPAPLQKRATLFSDKNENETMSDVGCLIATAVITLFSEPSAGEEN 647
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK 780
E ++ K Q I FE P++ + A +Q K + + A +KK + + +
Sbjct: 648 EGRLTAAQKKAQSI---MESFENPFRMISNRWKLASQVQIKKEAQEALRKKAEQTAAREQ 704
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRERE--EEKEEQPATKKIKVEK 838
+ EE TQ+ + ++Q + +E +KR+++ E E E K+E+ K++K +
Sbjct: 705 AK-EEYKAATQQVISVRQ-----QAVLENATKKRERMGSEPETPEPKQEK---KRLKASQ 755
Query: 839 PEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTIS 896
P + E K+ P + S K N K K+ + +P + D GK T+
Sbjct: 756 PPQEQEPPKEFT----PYDYSKSDFKAFSGNSKAKQ-SAQFDPNKQDPP-GKKCATVG 807
>gi|390345989|ref|XP_001198503.2| PREDICTED: exosome component 10 [Strongylocentrotus purpuratus]
Length = 752
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 318/542 (58%), Gaps = 40/542 (7%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKTQNIS 83
Q A + T+ A P+ ++ +S + DK++ + L Q
Sbjct: 23 FAQKALGKLKLATRAANELPAAGDDYDFYSSFEGFRQFCNSQGDKLLGNIQRLAGQQGAD 82
Query: 84 KS---MSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTP--SVLP--SQPKIVKES 135
+S +SK+ LE + D L E ND LLE+ +D G P S P S+P+++ S
Sbjct: 83 ESQVGLSKILDLEDRIDSLIETNDTLLENAGALLDEAEGISKPTQSFSPGVSKPQLIVTS 142
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
WNK K S E KS N+ +++ A I RPQL+FK +VDNS F P + K
Sbjct: 143 WNK--KRSEALNE------KSRNFRLMH--ARNIARPQLKFKDRVDNS-NVPFVPVITHK 191
Query: 196 PNALKPLA--------ILLEKYDA-----------IESFCHPYEYELDLYVPKEDFLKCE 236
PNALKPL L K D+ E++ HPY++ELD P L+
Sbjct: 192 PNALKPLPEVFDTTKKSFLTKTDSSSPAKRDSETQTEAYPHPYQHELDHLEPLPSQLEPV 251
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD 296
+ PL TP ++ ++ +L LKQ +EIA+DLE+H+YRSY G+TCLMQIST +
Sbjct: 252 DDPSYTPLEATPFTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAE 311
Query: 297 KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF 356
DY+VDTL+LR +L++LN+ TD IVKVFHGA+ DI WLQ+D GLYVV MFDTHQA +
Sbjct: 312 HDYVVDTLELRSELQMLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMFDTHQASRS 371
Query: 357 LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
L P SLA LL YC V++DK +QL DWR RPLPE + YAR DTHYLLY+Y MK +L
Sbjct: 372 LGFPHHSLASLLSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNEL 431
Query: 417 SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYK 475
+ ++NL+ + S IC +Y KP+F + ++ F ++ + N +Q +A ++L+
Sbjct: 432 IKRGNDRRNLLRAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQMHAFKKLFA 491
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
WRD +AR +DESTGY+LP HML Q+A+ +P+D GI ACCNPVP VK+++ +I+ IL+
Sbjct: 492 WRDSLARQEDESTGYILPMHMLFQIAEILPKDQGGILACCNPVPPLVKQNINEIYHFILE 551
Query: 536 AR 537
AR
Sbjct: 552 AR 553
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 58/75 (77%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q +A ++L+ WRD +AR +DESTGY+LP HML Q+A+ +P+D GI ACCNPVP V
Sbjct: 479 NKKQMHAFKKLFAWRDSLARQEDESTGYILPMHMLFQIAEILPKDQGGILACCNPVPPLV 538
Query: 630 KEHVLDIHAIILKAR 644
K+++ +I+ IL+AR
Sbjct: 539 KQNINEIYHFILEAR 553
>gi|395521908|ref|XP_003765056.1| PREDICTED: exosome component 10 [Sarcophilus harrisii]
Length = 992
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 231/576 (40%), Positives = 334/576 (57%), Gaps = 54/576 (9%)
Query: 27 QNAYKSIVKCTKTAQSFP-STHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNIS-- 83
Q A S++ TK + P + E + P + + ++++ + +++ Q
Sbjct: 145 QFALGSVLAATKASNGLPQAGDEYDFYRSFPGFRAFCETQGERLLQCMSKVMQYQGCRSH 204
Query: 84 -KSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIVKESW 136
K SK+ LE + D+L ++ND +LE + +D +G +LP+ PK + SW
Sbjct: 205 IKDRSKVTELEDKFDLLVDSNDVILERVGILLDEASGVNKNQQPILPAGMQVPKTIVSSW 264
Query: 137 NKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKP 196
N+ A N KK+S + +L+ A I RPQL+F+ KVDNS F PK+ KP
Sbjct: 265 NRKAGEYN-------KKKQSETFRLLH--AKNIIRPQLKFREKVDNS-NTPFVPKIFIKP 314
Query: 197 NALKPLAILLEKYDAI----------------------------ESFCHPYEYELDLYVP 228
+A KPLA L K + F HPY+YELD + P
Sbjct: 315 HAQKPLAQALTKERRERQERPEDLDVPPALADFLYQQRTQQIEQDMFAHPYQYELDHFTP 374
Query: 229 KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L+ + + + +TP ++ +++ +L +L ++ IDLE+H+YRS+ G TC
Sbjct: 375 PDAVLQKPQIQMYRSVEETPCHFVSTLDELVELNEKLLSCKDFGIDLEHHSYRSFLGLTC 434
Query: 289 LMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
LMQISTR +D+I+DTL+LR DL +LNE TD IVKVFHGAD DI+WLQKDFGLYVV MF
Sbjct: 435 LMQISTRTEDFIIDTLELRCDLYILNESFTDPAIVKVFHGADMDIEWLQKDFGLYVVNMF 494
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DTHQA + L + R SL +LLK YC+V+++K +QL DWR RPLPE YAR DTHYLLY+
Sbjct: 495 DTHQAARILNLGRHSLDHLLKLYCNVETNKQYQLADWRIRPLPEEMFNYARHDTHYLLYI 554
Query: 409 YDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQQK 467
YD M+ DL A+G+ + + S++IC K+ KP+F E+ Y+ ++R LN QQ
Sbjct: 555 YDKMRSDLWERANGQPAQLQVVWQRSKDICLKKFIKPIFTEDSYLELYRKQKKHLNTQQL 614
Query: 468 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVL 527
A + LY WRDR AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ +
Sbjct: 615 TAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQIN 674
Query: 528 DIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQV 563
++H +I +AR L K G+KK + Q V
Sbjct: 675 EMHLLIQQAREMPLLK-----SEVASGVKKSKSQPV 705
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 176/378 (46%), Gaps = 71/378 (18%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + LY WRDR AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 610 NTQQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 669
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQ-------QQVSPPHDSM---- 678
++ + ++H +I +AR PL K G+KK K Q + PHD
Sbjct: 670 RQQINEMHLLIQQAREMPLLK-----SEVASGVKKSKSQPVPERIENALFGPHDYSRAPP 724
Query: 679 -DCLNY--KGLPPVFPNNIICAPSNTHLSSYDPQD-KKIAQIGLFFE--------DKMKI 726
D LN G P+ + + + N + + DP A I LF E K+
Sbjct: 725 DDYLNVVAAGPGPLQKSPTLFSDKNENETLSDPGCFVATAVITLFNEPNAEEENGRKLTA 784
Query: 727 GSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEEN 786
+ Q+I FE P++ +L ++E I ++ K D ++
Sbjct: 785 AQQRAQRI---MESFENPFRMYLPAEENRAYI--------SQSAKYDPMS---------- 823
Query: 787 VKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE--REEEKEEQPATKKIKVEKPEES-- 842
KI + K + S+ + K E ++ RKK + RE+ K E AT + + E++
Sbjct: 824 -KIYEISNRWK-LASQGQIKKEAQEASRKKAEQTAVREQAKAEYKATAQQVISVREQASL 881
Query: 843 -NEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFS 901
N K+ ++ SEP + E TKR K+ +P+E + K + D+S
Sbjct: 882 ENATKKRERMGSEPGSLEPKHE--------TKRLKVSQQPQEQEPPK-----EFTPYDYS 928
Query: 902 KVNYNKYMA--KPGKSNQ 917
K ++ + A KP +S+Q
Sbjct: 929 KSDFKAFAANNKPKQSSQ 946
>gi|443695610|gb|ELT96477.1| hypothetical protein CAPTEDRAFT_99256, partial [Capitella teleta]
Length = 627
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/538 (41%), Positives = 326/538 (60%), Gaps = 31/538 (5%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGT-SDKVMTLVDSLLKTQNIS 83
L+Q+A + ++ T+ + P+ ++ +S V + +++ L+ +++
Sbjct: 2 LLQDALQKLMLATRNSNELPNAGDDFDYYSSFESFRHVMDMEASRILQLMQQIIRYHGAK 61
Query: 84 KSM------SKLYLEGQKDILTEANDKLLESINTRIDVMAG---TKTPSVLPSQ-PKIVK 133
S+ + E + D L +AND+++E T +D +G T+TP V+ S PK +
Sbjct: 62 GSIHSGNENTMQQDEDRFDTLVDANDQIMERAGTYLDEASGVRKTETPLVVASMTPKAIS 121
Query: 134 ESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK 193
SWNK ++ + S ++ +L+ A I+RPQ +FK K+DN+ + F P +K
Sbjct: 122 GSWNK---------QMTKITESSRSFHLLS--AKNIQRPQGKFKDKIDNT-NRPFIPIIK 169
Query: 194 EKPNALKPLA----ILLEKYDAIE---SFCHPYEYELDLYVPKEDFLKCEEPKQALPLSD 246
EKPNA+K L +L + I S+ HPY+YELD + P + LK EP+ LP+ D
Sbjct: 170 EKPNAMKSLEASRWVLFPLSNLISLRFSYPHPYQYELDHFEPTPEQLKKVEPQTPLPIDD 229
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
TP+ M+ E + L + L Q +EIA+D+E+H+YRS+ G TCL+QISTR D++VD L L
Sbjct: 230 TPISMVDTEEDLRDLCAMLSQVKEIAVDVEHHSYRSFLGLTCLLQISTRTHDFLVDALAL 289
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
RE L +LN V TD IVKVFHGA+ DI WLQ+D G+YVV MFDT A K L +PR SLA+
Sbjct: 290 REHLHLLNNVFTDPGIVKVFHGAEQDIHWLQRDLGVYVVNMFDTFHAAKALGLPRLSLAH 349
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LL YC V DK FQ+ DWR RPLPE + YAR DTHYLLYV+D +K L A + NL
Sbjct: 350 LLTTYCSVKPDKKFQMADWRIRPLPEQLVHYAREDTHYLLYVHDLLKNQLLDAGNEAANL 409
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKD 485
+ S +S +CK +Y KP+ + + ++ I ++ N+QQ AL+E+Y WRD R D
Sbjct: 410 LCSVLDSSTGVCKARYVKPILSSDSHLVIMKKARKWFNSQQMQALKEMYAWRDGCGRVDD 469
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
ESTGYVLPNHM+L +A+++P++ GI ACCNP+P V+ ++ ++ II +AR L K
Sbjct: 470 ESTGYVLPNHMMLNIAENLPKEPAGILACCNPIPPLVRRNLNELAMIIAEARKAELVK 527
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 10/125 (8%)
Query: 526 VLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRD 585
VLD + KAR KP+ L MKK ++ N+QQ AL+E+Y WRD
Sbjct: 413 VLDSSTGVCKARY---VKPILSSDSHLVIMKKARKW-------FNSQQMQALKEMYAWRD 462
Query: 586 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 645
R DESTGYVLPNHM+L +A+++P++ GI ACCNP+P V+ ++ ++ II +AR
Sbjct: 463 GCGRVDDESTGYVLPNHMMLNIAENLPKEPAGILACCNPIPPLVRRNLNELAMIIAEARK 522
Query: 646 QPLTK 650
L K
Sbjct: 523 AELVK 527
>gi|402852919|ref|XP_003891154.1| PREDICTED: exosome component 10 [Papio anubis]
Length = 844
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/477 (45%), Positives = 295/477 (61%), Gaps = 45/477 (9%)
Query: 102 NDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIVKESWNKNAKASNVWQEVHDNKKKS 156
D+LL+ +D +G VLP+ PK V SWN+ A + K KS
Sbjct: 77 GDRLLQCQGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAE-------YGKKAKS 129
Query: 157 ANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-------- 208
+ +L+ A I RPQL+F+ K+DNS F PK+ KPNA KPL L K
Sbjct: 130 ETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQD 186
Query: 209 -----------YDAI----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
D I + F HPY+YEL+ + P + + +P+ P+ +T
Sbjct: 187 RPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPPDSVFQKPQPQLYRPIEET 246
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P I+ +++ +L +L QE A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR
Sbjct: 247 PCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELR 306
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +L
Sbjct: 307 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHL 366
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
LK YC+VDS+K +QL DWR RPLPE + YAR DTHYLLY+YD M+L+L +G+ +
Sbjct: 367 LKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNGQPVQL 426
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDE 486
+ SR+IC K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DE
Sbjct: 427 QVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDE 486
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
S GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 487 SYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 543
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 463 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 522
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 523 RQQINEMHLLIQQAREMPLLK 543
>gi|355686789|gb|AER98187.1| exosome component 10 [Mustela putorius furo]
Length = 732
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/453 (46%), Positives = 286/453 (63%), Gaps = 43/453 (9%)
Query: 124 VLPSQ---PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKV 180
VLP+ PK + SWN+ A + K KS + +L+ A I RPQL+F+ KV
Sbjct: 17 VLPAGLQVPKTIVSSWNRKAGE-------YSKKTKSETFRLLH--AKNIVRPQLKFREKV 67
Query: 181 DNSYEQLFEPKLKEKPNALKPLAILLEK-------------------YDAI--------- 212
DNS F PK+ KPNA KPL L K D I
Sbjct: 68 DNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVE 126
Query: 213 -ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEI 271
+ F HPY+YELD + P + L+ +P+ P+++TP ++ +++ +L +L QE
Sbjct: 127 QDMFAHPYQYELDHFTPPDSVLQKPQPQLYRPVAETPCHFVSSLDELVELNEKLLTCQEF 186
Query: 272 AIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 331
A+DLE+H+YRS+ G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADS
Sbjct: 187 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADS 246
Query: 332 DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 391
DI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLP
Sbjct: 247 DIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLP 306
Query: 392 EPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG 451
E + YAR DTHYLLY+YD M+L+L + + + + SR+IC K+ KP+F +E
Sbjct: 307 EEMLHYARDDTHYLLYIYDKMRLELWERGNEQPVQLQVVWQRSRDICLKKFVKPIFTDES 366
Query: 452 YMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QG
Sbjct: 367 YLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQG 426
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
I ACCNPVP V++ + +IH +I +AR L K
Sbjct: 427 IIACCNPVPPLVRQQLNEIHLLIQQAREMPLLK 459
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 183/385 (47%), Gaps = 64/385 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 379 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 438
Query: 630 KEHVLDIHAIILKARLQPLTKP-----VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYK 684
++ + +IH +I +AR PL K V K P L G ++ + + PHD +
Sbjct: 439 RQQLNEIHLLIQQAREMPLLKSEVAAGVRKSGP-LPG--PERLENVLFGPHDCSHA-SSD 494
Query: 685 GLPPVFPNNIICAPSNTHLSSY-DPQDKKI---------AQIGLFFE--------DKMKI 726
G PV P+N AP+ S + D +++ + A I LF E + +
Sbjct: 495 GY-PVIPSN-GPAPAQKQASLFPDRREETLPDTRCLIATAVITLFNEPSVEEARKSPLTV 552
Query: 727 GSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEEN 786
K Q I + FE P++ FL S E+ + + K +P
Sbjct: 553 AQKKAQNI---MASFENPFKMFLPSLEHRAHVSQA-----------------AKFDPSSK 592
Query: 787 V-KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEK 845
+ +I+ + Q+++ + K E KEK + R++ KEE AT E++
Sbjct: 593 IYEISNRWKLASQVQTHKGPK-ETAKEKAAEQTAARDQAKEEYQATA-------EQAVSV 644
Query: 846 TKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNY 905
+Q ++S K+ + + P + +K ++ ++++ K D + T D+SK ++
Sbjct: 645 RQQAALESAAKKRERTTSDPRTTEQKQEKKRLRTSKKPKDPDPPEKDFT--PYDYSKSDF 702
Query: 906 NKYM----AKPGKSNQKKKGKGGKQ 926
+ AKP + + K+ + GK+
Sbjct: 703 KAFAGNSKAKPSQFDPNKQTQPGKK 727
>gi|395841111|ref|XP_003793392.1| PREDICTED: exosome component 10 [Otolemur garnettii]
Length = 881
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/453 (45%), Positives = 284/453 (62%), Gaps = 43/453 (9%)
Query: 124 VLPSQ---PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKV 180
VLP+ PK V SWN+ A + K KS + +L+ A I RPQL+F+ K+
Sbjct: 136 VLPAGLQVPKTVVSSWNRKAGE-------YGKKTKSETFRLLH--AKNIVRPQLKFREKI 186
Query: 181 DNSYEQLFEPKLKEKPNALKPLAILLEK-------------------YDAI--------- 212
DNS F PK+ KPNA KPL L K D I
Sbjct: 187 DNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQKVE 245
Query: 213 -ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEI 271
+ F HPY+YELD + P + L+ +P+ P+ +TP ++ +++ +L +L QE
Sbjct: 246 QDMFAHPYQYELDHFTPPDSVLQKPQPQLYRPIEETPCHFVSSLDELVELNEKLLNCQEF 305
Query: 272 AIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 331
A+DLE+H+YRS+ G TCLMQISTR +D+++DTL+LR DL +LNE TD IVKVFHGADS
Sbjct: 306 AVDLEHHSYRSFLGLTCLMQISTRTEDFVIDTLELRSDLYILNESFTDPAIVKVFHGADS 365
Query: 332 DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 391
DI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+V+S+K +QL DWR RPLP
Sbjct: 366 DIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLP 425
Query: 392 EPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG 451
E + YAR DTHYLLY+YD M+L+L G+ + SR+IC K+ KP+F +E
Sbjct: 426 EEMLSYARDDTHYLLYIYDKMRLELWERGGGRPVQSQVVWQRSRDICLKKFIKPIFTDES 485
Query: 452 YMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QG
Sbjct: 486 YLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQG 545
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
I ACCNPVP V++ + ++H ++ +AR L K
Sbjct: 546 IIACCNPVPPLVRQQINEMHLLVQQAREMPLLK 578
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 172/374 (45%), Gaps = 63/374 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 498 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 557
Query: 630 KEHVLDIHAIILKARLQPLTKP-----VEKLQP-----SLDGMKKKKQQQQVSPPHDSMD 679
++ + ++H ++ +AR PL K V+K P L+ + +PP D
Sbjct: 558 RQQINEMHLLVQQAREMPLLKSEIGTGVKKSGPLPSTERLENVLFGPHDCSHAPP-DGNS 616
Query: 680 CLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFED---------KMKIGSNK 730
+ G P F P +S D + A + F + + + K
Sbjct: 617 AVPTNGSVP-FQKQASLFPDQKEETSLDTRCLVAAAVITLFNEPSAEENGKGPLTVAQKK 675
Query: 731 YQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKT-EPEENVKI 789
Q I FE P++ FL S+ + I +E K D P K E K+
Sbjct: 676 AQSI---MESFENPFRMFLPSRGHCAHI--------SEAAKFD---PSTKIYEISNRWKL 721
Query: 790 TQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKE---EQPATKKIKVEKPEESNEKT 846
+ Q++ E KE V+ +K R+ +E+ +EK+ E+PA ++ + ES K
Sbjct: 722 ASQ----VQVQKESKETVK-KKAARQTATQEQVKEKQEAAEEPAL-SVRQQVALESAAK- 774
Query: 847 KQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYN 906
K+ + S+P+ + +EK KR K+ +PK++D + DF+ +Y+
Sbjct: 775 KRERTMSDPRTTEQKQEK--------KRLKVSKKPKDSD---------LPEKDFTPYDYS 817
Query: 907 KYMAKPGKSNQKKK 920
+ K N K K
Sbjct: 818 QSDFKAFAGNSKSK 831
>gi|403289992|ref|XP_003936119.1| PREDICTED: exosome component 10 [Saimiri boliviensis boliviensis]
Length = 884
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/453 (46%), Positives = 287/453 (63%), Gaps = 43/453 (9%)
Query: 124 VLPSQ---PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKV 180
VLP+ PK V SWN+ A + K KS + +L+ A I RPQL+F+ K+
Sbjct: 139 VLPAGLQVPKTVVSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKI 189
Query: 181 DNSYEQLFEPKLKEKPNALKPLAILLEK-------------------YDAI--------- 212
DNS F PK+ KPNA KPL L K D I
Sbjct: 190 DNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIYQQRTQQVE 248
Query: 213 -ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEI 271
+ F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE
Sbjct: 249 QDMFAHPYQYELNHFTPPDSVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEF 308
Query: 272 AIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 331
A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADS
Sbjct: 309 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADS 368
Query: 332 DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 391
DI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLP
Sbjct: 369 DIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLP 428
Query: 392 EPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG 451
E + YAR DTHYLLY+YD M+L+L ++G+ + + SR+IC K+ KP+F +E
Sbjct: 429 EEMLSYARDDTHYLLYIYDKMRLELWERSNGQPVQLQVVWQRSRDICLKKFIKPIFTDES 488
Query: 452 YMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QG
Sbjct: 489 YLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQG 548
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
I ACCNPVP V++ + ++H +I +AR L K
Sbjct: 549 IIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 581
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 157/363 (43%), Gaps = 56/363 (15%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 501 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 560
Query: 630 KEHVLDIHAIILKARLQPLTKP--VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLP 687
++ + ++H +I +AR PL K ++ S ++ + + PHD G P
Sbjct: 561 RQQINEMHLLIQQAREMPLLKSEVAAGVKKSAPLPSAERLENVLFGPHDCSHAPP-DGYP 619
Query: 688 PVFPNNIICAPSNTHLSSYDPQDKKI--------AQIGLFFE--------DKMKIGSNKY 731
+ N + + +L + +D + A I LF E + + K
Sbjct: 620 IIPTNGSVPIQNQANLFPDEKEDNLLGTTCLIATAVITLFNEPSAEDNKKGPLTVAQKKA 679
Query: 732 QKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQ 791
Q I FE P++ FL S + I + K +P +
Sbjct: 680 QNI---MESFENPFRMFLPSLGHRAPISQA-----------------AKFDPSTKIYEIS 719
Query: 792 EPVVLKQIKSEEKEKVEMEKEKRKKILREREEEK----EEQPATKKIKVEKPEESNEKTK 847
L QI+ +KE E +K+K + RE+ K ++ + N K
Sbjct: 720 NRWKLAQIQV-QKESNETDKKKAAEQTAAREQAKEAGSAAAEQAASVRQQAASLENAAKK 778
Query: 848 QHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNK 907
+ + S+P+ PE+ EK KR KI +PK+ G + D+S+ ++
Sbjct: 779 RERTASDPR-------TPEQKQEK-KRLKISKKPKD----PGPPEKDFTPYDYSQSDFKA 826
Query: 908 YMA 910
+
Sbjct: 827 FAG 829
>gi|221121078|ref|XP_002157951.1| PREDICTED: exosome component 10-like [Hydra magnipapillata]
Length = 758
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/529 (41%), Positives = 321/529 (60%), Gaps = 24/529 (4%)
Query: 21 TFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKT 79
T Q+ + V+ T+ + + EN +S P Y +++ ++ LLK
Sbjct: 14 TLKEFTQDILQKTVQLTQYGNALATNLENYEYFSSFPIYSEFCLEEGSRLVNIIGELLKH 73
Query: 80 QNISKSMS--KLYLEGQKDILTEANDKLLESINTRIDVMAGTKT-------PSVLPSQPK 130
+ S S K+ +E + + L +AND +LE+I + +D AG K P+ + Q
Sbjct: 74 HGVQCSWSSQKIDIEERFERLIDANDVMLETIGSLLDEAAGLKKNNKPILPPTSIYKQSS 133
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
V SWNK+ + + KS + +L A I+RPQL+F K+DNS + F P
Sbjct: 134 PVVSSWNKDKN--------YKSAAKSGAFKLL--LAKNIQRPQLKFINKIDNS-NKPFVP 182
Query: 191 KLKEKPNALKPLAILLEKYDAIESF-CHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPL 249
+K+K NA+K IL + IE F HPY YEL P + L+ EP + L T L
Sbjct: 183 YIKQKHNAIKR-DILSDFRTEIEDFESHPYAYELSKLEPHDWQLEEAEPLKYPMLDTTNL 241
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
I E + L+++LK+ +EIA+DLE+H+YRS+QG+ CLMQISTR +D+I+DTL LRE+
Sbjct: 242 TYIDTDEGLNDLINKLKKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTLALREE 301
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
+ +NE+ +D NI+KV HGADSDI WLQ+DFG+YVV MFDT QA + L R SLAYLL
Sbjct: 302 MYKINEIFSDPNILKVMHGADSDIGWLQRDFGVYVVNMFDTGQAARTLHEDRFSLAYLLS 361
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
YC+VD+ K +QL DWR RP+P+ I YA+ DTHYLLYVYD ++ L + +NL+ S
Sbjct: 362 KYCNVDAQKQYQLADWRIRPIPKEMILYAQEDTHYLLYVYDILRNQLLNKGNANKNLLKS 421
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDEST 488
++ S +IC Y+KP+FN + Y+ + + LN QQ R L++WRD+ AR++DES
Sbjct: 422 VYSKSTSICATMYQKPLFNNDSYIATYEKYRGRLNPQQLECFRLLFEWRDKTAREEDESI 481
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
Y LPNHML Q+A+++P++ QG+ ACCNPVP VK+ +IH +++ AR
Sbjct: 482 VYTLPNHMLFQIAENLPKEPQGVIACCNPVPPLVKQRNTEIHLLVMLAR 530
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ R L++WRD+ AR++DES Y LPNHML Q+A+++P++ QG+ ACCNPVP V
Sbjct: 456 NPQQLECFRLLFEWRDKTAREEDESIVYTLPNHMLFQIAENLPKEPQGVIACCNPVPPLV 515
Query: 630 KEHVLDIHAIILKAR 644
K+ +IH +++ AR
Sbjct: 516 KQRNTEIHLLVMLAR 530
>gi|340380967|ref|XP_003388993.1| PREDICTED: exosome component 10-like [Amphimedon queenslandica]
Length = 724
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/469 (43%), Positives = 290/469 (61%), Gaps = 37/469 (7%)
Query: 91 LEGQKDILTEANDKLLESINTRID-VMAGTKTPSVLP--SQPKIVKESWNKNAKASNVWQ 147
+E Q + L E ND L+E I+ +D + K + P ++ ++ +WNK +
Sbjct: 68 IEEQFENLIEGNDLLIERISGFLDKATSNDKDEPLAPEATETEVTVATWNK--------K 119
Query: 148 EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE 207
E K W + RPQ QFK +DNS E F PKL+EKPNA+KPL +
Sbjct: 120 EGEGEGKVVKMW------RSNVPRPQSQFKDMIDNS-EGPFVPKLREKPNAMKPLPTVYS 172
Query: 208 KY------DAI-----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
+ +A+ E HPYEYE++ + E + +EP+ L DTPL+
Sbjct: 173 QLKVPCTLNALIENARKWAELPERLTHPYEYEINNFEVLESQTQIKEPQVYKSLEDTPLI 232
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ + Q+ ++ELK EIAIDLE H+YRS+QG+ CLMQ+STR DYI+DTL LR L
Sbjct: 233 FVNDEGQLLSFINELKGVTEIAIDLEAHSYRSFQGFVCLMQVSTRTTDYIIDTLSLRPHL 292
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
+LNEV T+ NI+KV HGAD DI WLQ+DFG+Y+V +FDT QAC+ L +PR SLA+LL +
Sbjct: 293 HLLNEVFTNPNIIKVMHGADWDIPWLQRDFGVYIVNLFDTGQACRTLGLPRYSLAFLLSY 352
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
C V ++K +QL DWR RPLPE I+YAR DTHYLLYVYD ++ +L ++ + NL+ +
Sbjct: 353 CCGVTANKQYQLADWRIRPLPEDMIKYAREDTHYLLYVYDRLRNELIRRSNSQSNLINAV 412
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFR--SHALLNNQQKYALRELYKWRDRIARDKDEST 488
NS+ I Y+KP N+E Y+ + + + L+++Q YAL+ LY+WR +AR +DES
Sbjct: 413 LKNSKEISLKVYKKPAINDESYLKLCKKFNKRNLSHKQLYALKCLYQWRFNVARREDESP 472
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
GYVLPNHML Q+ + +P++ GI ACCNPVP +++ + ++H II AR
Sbjct: 473 GYVLPNHMLFQLCEILPKEPGGILACCNPVPTLIRQQLQEVHDIITTAR 521
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 56/75 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q YAL+ LY+WR +AR +DES GYVLPNHML Q+ + +P++ GI ACCNPVP +
Sbjct: 447 SHKQLYALKCLYQWRFNVARREDESPGYVLPNHMLFQLCEILPKEPGGILACCNPVPTLI 506
Query: 630 KEHVLDIHAIILKAR 644
++ + ++H II AR
Sbjct: 507 RQQLQEVHDIITTAR 521
>gi|390368374|ref|XP_003731440.1| PREDICTED: exosome component 10-like, partial [Strongylocentrotus
purpuratus]
Length = 776
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/404 (46%), Positives = 261/404 (64%), Gaps = 23/404 (5%)
Query: 154 KKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA--------IL 205
+KS N+ +++ A I RPQL+FK +VDNS F P + KPNALKPL
Sbjct: 7 EKSRNFRLMH--ARNIARPQLKFKDRVDNS-NVPFVPVITHKPNALKPLPEVFDTVKKSF 63
Query: 206 LEKYDA-----------IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITE 254
L K D+ E++ HPY++ELD P L+ + PL TP ++
Sbjct: 64 LTKTDSSSPAKRDSETQTEAYPHPYQHELDHLEPLPSQLEPVDNPSYTPLEATPFTLVDT 123
Query: 255 PEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLN 314
++ +L LKQ +EIA+DLE+H+YRSY G+TCLMQIST + DY+VDTL+LR +L++LN
Sbjct: 124 VSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRSELQMLN 183
Query: 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV 374
+ TD IVKVFHGA+ D WLQ+D GLYVV MFDTHQA + L P SLA LL YC V
Sbjct: 184 DAFTDPKIVKVFHGANMDFDWLQRDLGLYVVNMFDTHQASRSLGFPHHSLASLLSRYCQV 243
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
++DK +QL DWR RPLPE + YAR DTHYLLY+Y MK +L + ++NL+ + S
Sbjct: 244 EADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRGNDRRNLLRAVLDQS 303
Query: 435 RNICKLKYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLP 493
IC +Y KP+F + ++ F ++ + N +Q +A ++L+ WRD +AR +DESTGY+LP
Sbjct: 304 TRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQMHAFKKLFAWRDSLARQEDESTGYILP 363
Query: 494 NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
HML Q+A+ +P+D GI ACCNPVP VK+++ +I+ IL+AR
Sbjct: 364 MHMLFQIAEILPKDQGGILACCNPVPPLVKQNINEIYHFILEAR 407
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 58/75 (77%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q +A ++L+ WRD +AR +DESTGY+LP HML Q+A+ +P+D GI ACCNPVP V
Sbjct: 333 NKKQMHAFKKLFAWRDSLARQEDESTGYILPMHMLFQIAEILPKDQGGILACCNPVPPLV 392
Query: 630 KEHVLDIHAIILKAR 644
K+++ +I+ IL+AR
Sbjct: 393 KQNINEIYHFILEAR 407
>gi|346467363|gb|AEO33526.1| hypothetical protein [Amblyomma maculatum]
Length = 656
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/326 (52%), Positives = 239/326 (73%), Gaps = 2/326 (0%)
Query: 214 SFCHPYEYELDLYVPKEDFLKCEEPKQ-ALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
S+ HPYE+E++ + P ++ LK K PL +TP ++ P+Q+ L + L ++ EIA
Sbjct: 1 SYGHPYEWEIEHFDPSQEQLKAPAEKNLPPPLEETPYTLVETPQQLQDLCTALSKETEIA 60
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YR++QG TCLMQISTR DY+VDTLKLR +L+VLNEV + I+KV HGAD D
Sbjct: 61 VDLEHHSYRTFQGITCLMQISTRSHDYVVDTLKLRHELQVLNEVFANPKIIKVLHGADMD 120
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
+ WLQ+DFGLY+VG+FDT QA + L + SLA+LL+HYC V++DK FQL DWR RPLP
Sbjct: 121 VLWLQRDFGLYLVGLFDTGQAARVLGLAHFSLAFLLRHYCRVEADKQFQLADWRIRPLPA 180
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
I YAR+DTHYLLY+ DC+K DL+ ++ NL+ S F S+ + +YEKP +NE+ Y
Sbjct: 181 VMIHYARSDTHYLLYIMDCLKSDLADRSNKNDNLLRSVFDRSKQVALKRYEKPSYNEQSY 240
Query: 453 MNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++R S N +Q +ALR LY WRD IAR +DESTGYVLP HM+L++++ +PR+ QGI
Sbjct: 241 LELYRKSRKTFNTRQLHALRHLYAWRDHIARVEDESTGYVLPKHMILEISEILPREQQGI 300
Query: 512 FACCNPVPQTVKEHVLDIHAIILKAR 537
ACCNP P V++++ ++H+IILKAR
Sbjct: 301 VACCNPCPPLVRQNLNELHSIILKAR 326
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 64/81 (79%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q +ALR LY WRD IAR +DESTGYVLP HM+L++++ +PR+ QGI ACCNP P V
Sbjct: 252 NTRQLHALRHLYAWRDHIARVEDESTGYVLPKHMILEISEILPREQQGIVACCNPCPPLV 311
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++++ ++H+IILKAR PL +
Sbjct: 312 RQNLNELHSIILKAREVPLNQ 332
>gi|339717671|pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717672|pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717673|pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717674|pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/405 (47%), Positives = 266/405 (65%), Gaps = 31/405 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-------------------Y 209
I RPQL+F+ K+DNS F PK+ KPNA KPL L K
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 210 DAI----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 259
D I + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
+L +L QE A++LE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
+QL DWR RPLPE + YAR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 440 LKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L
Sbjct: 301 KKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMML 360
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 361 KIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 405
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 325 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 384
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 385 RQQINEMHLLIQQAREMPLLK 405
>gi|339717675|pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
gi|339717676|pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/405 (47%), Positives = 265/405 (65%), Gaps = 31/405 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-------------------Y 209
I RPQL+F+ K+DNS F PK+ KPNA KPL L K
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 210 DAI----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 259
D I + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
+L +L QE A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
+QL DWR RPLPE + AR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSAARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 440 LKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L
Sbjct: 301 KKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMML 360
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 361 KIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 405
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 325 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 384
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 385 RQQINEMHLLIQQAREMPLLK 405
>gi|357607504|gb|EHJ65543.1| PM-Scl autoantigen-like protein [Danaus plexippus]
Length = 787
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/451 (45%), Positives = 278/451 (61%), Gaps = 29/451 (6%)
Query: 92 EGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHD 151
E D + + ND++L+ IN I+ + + P S P I K
Sbjct: 86 EYNTDHVIDVNDRILDRININIENVCRGEEPGPSFSSPVITKI----------------- 128
Query: 152 NKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA 211
+ S +F GA I RPQL FK VDNS + L+ PK+ +KPN +KPLA+ + D
Sbjct: 129 -QVGSTMFF----GAKNIARPQLSFKEPVDNS-DNLWVPKISDKPNNIKPLALNILYNDE 182
Query: 212 IES--FCHPYEYELDLYVPKEDFLKCEEPKQALP--LSDTPLMMITEPEQVTQLVSELKQ 267
E+ + HPY+ EL+LY P L+ + P L DTPL I + +LV L
Sbjct: 183 GEAVGYEHPYKIELELYQPPTKVLEPDTEPPTFPKSLEDTPLSFIETVADLEKLVEHLNT 242
Query: 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 327
EIA+D+E+H+YR+YQG TCL+QIST + D+I+DTL +RE + LN TD +KVFH
Sbjct: 243 VDEIAVDVEHHSYRTYQGITCLIQISTYEGDFIIDTLAVREHVHKLNLAFTDPKKLKVFH 302
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
GA+ DI WLQ+DFG+YVVGM DTHQA + L +P SL LL YC VD+DK +QL DWR
Sbjct: 303 GAERDIVWLQRDFGVYVVGMIDTHQAARALALPGLSLKSLLMRYCRVDADKRYQLADWRI 362
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVF 447
RPLP+ QYAR DTHYLLY++ MK DL A + +L+ S F NSR+IC L Y K V
Sbjct: 363 RPLPDELRQYARVDTHYLLYMWRRMKADLLAIS-SDGSLLRSVFENSRHICSLTYNKEVI 421
Query: 448 NEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
NE ++ ++ RS N +Q ALR LY+WRD AR+ DEST Y+LPNHMLL +A+++PR
Sbjct: 422 NESSHLKLYVRSKKSFNTRQMAALRLLYRWRDANARELDESTTYLLPNHMLLALAETLPR 481
Query: 507 DIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
++QG+ A CNP+P +K++++ +H ++L R
Sbjct: 482 ELQGVSALCNPMPPFLKQNLITVHRMLLSCR 512
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 176/378 (46%), Gaps = 50/378 (13%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q ALR LY+WRD AR+ DEST Y+LPNHMLL +A+++PR++QG+ A CNP+P +
Sbjct: 438 NTRQMAALRLLYRWRDANARELDESTTYLLPNHMLLALAETLPRELQGVSALCNPMPPFL 497
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYK---GL 686
K++++ +H ++L R PL +PV L S G+ HD + L+Y+
Sbjct: 498 KQNLITVHRMLLSCRELPL-EPV--LYSSSSGVSIAMAPAPQRMIHD-LSHLHYQEGETY 553
Query: 687 PPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQ 746
P V + P L + P D I L + KM F PY
Sbjct: 554 PEV--DATFVEPD---LPVFQPNDAPIVS-DLNVDAKM----------------FIPPYD 591
Query: 747 RFLKSKEYAKA--IQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEK 804
R+ K + A+ I+E DKE A+ I +KTE ++ + ++ + K + K
Sbjct: 592 RYRKYRALAQVEEIKEYKDKE-AKIAAISKGNELIKTEVLLKLQEAKS-MIENEGKGDLK 649
Query: 805 EKVEMEKEKR---------------KKILREREEEKEEQPATKKIKVEKPEESNEKTKQH 849
+K E+ E+ I R R+ +E ++ +P+ SN+ + Q
Sbjct: 650 KKAEVPLEESTIKLYDSRSGGTSDGNTIERGRDRSQEGDEISRGKNDGRPDVSNQNSAQR 709
Query: 850 KIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGT-ISTVDFSKVNYNKY 908
K K E K++ E NEKT + K + K +S T + ++ KVNY K+
Sbjct: 710 KRKMSNAEKAEEKKR-EIGNEKTSSQNKGDKTKNKNKVKNQSEQTSVKPYNYKKVNYKKF 768
Query: 909 MAKPGKSNQKKKGKGGKQ 926
+ +++++ K K K
Sbjct: 769 HDEVERTHKQPKSKFKKH 786
>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
Length = 892
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 215/577 (37%), Positives = 324/577 (56%), Gaps = 34/577 (5%)
Query: 3 DTNQEIPKSDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISG 61
D QE DEA SK + + +IV+ + A P E L AS P Y
Sbjct: 2 DETQEKEAGDEAPD--SKAIEECTKKVQHNIVQAVRAANVLPKRSEGYELFASFPLYAQF 59
Query: 62 VAGTSDKVMTLVDSLLKTQNISKSM-SKLYLEGQKDIL-TEANDKLLESINTRIDVMA-G 118
+ +++TL+ SL++ + SK+ + E ND ++E +D ++
Sbjct: 60 MNEQETRILTLLRSLMRNAGCRIRLPSKVDDIDDLIDIIAEGNDAIVERFGILMDALSRS 119
Query: 119 TKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSA----------NWFMLNKGAVE 168
+ V+ Q + E + + +AS V ++ SA + +N + +
Sbjct: 120 ARCEDVVIPQMEPGAEYVSGSGQASQGRYAVLLSRFNSAGETNSASNTPHRITVNSASSK 179
Query: 169 I-ERPQLQFKVKVDNSYEQLFEPKLKEKPNA----LKPLAILLEKYDAIESF-------C 216
+ +PQ+ + + VDN+ E F P+LKEK NA ++ L I E D ++
Sbjct: 180 VLVKPQVAYGIPVDNT-EADFVPRLKEKHNAVSEPIRSLHIRDEDCDNDSAWSSDQQESA 238
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
HPY+ EL+ + L+ +Q P+ DT L+M+ + E++ L EL + A+DLE
Sbjct: 239 HPYQLELETFKVPPSQLELGNVRQLRPIKDTELVMVDDAEKLKMLRDELNSVSKFAVDLE 298
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
+H+YRS+ G TCLMQIST +KDYI+D + D+++LNE T+ NI+KVFHG++ D++WL
Sbjct: 299 HHSYRSFLGLTCLMQISTDEKDYIIDPFPIWNDMQILNEPFTNPNILKVFHGSEYDVQWL 358
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+DFG+YVVGMFDT A L + SLA+L++ C+V DK Q DWR RPL I+
Sbjct: 359 QRDFGIYVVGMFDTFCAMHVLNFAKYSLAHLVQSICNVTLDKELQKADWRVRPLTTAHIE 418
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF 456
YAR+DTHYLLY YD ++ L + NL+ ST+ S IC+ Y+KP F EGY +
Sbjct: 419 YARSDTHYLLYCYDTLRQRLINEGNESNNLLRSTYNESALICRTVYKKPKFESEGYETLL 478
Query: 457 RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
R LN++Q YAL+ L+KWRD AR +DES YVLPNHMLLQ+A+ +PR+ QGI ACC+
Sbjct: 479 RGRKSLNSRQLYALKALWKWRDDRARAEDESLEYVLPNHMLLQIAEVLPREAQGILACCS 538
Query: 517 PVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLD 553
P+P VK+ + ++H I+ AR +P+E L+P+L+
Sbjct: 539 PIPPLVKQELTNLHRIVHTAR----DRPLE-LRPTLN 570
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 5/91 (5%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q YAL+ L+KWRD AR +DES YVLPNHMLLQ+A+ +PR+ QGI ACC+P+P V
Sbjct: 485 NSRQLYALKALWKWRDDRARAEDESLEYVLPNHMLLQIAEVLPREAQGILACCSPIPPLV 544
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLD 660
K+ + ++H I+ AR +PL +L+P+L+
Sbjct: 545 KQELTNLHRIVHTARDRPL-----ELRPTLN 570
>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
intestinalis]
Length = 647
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 175/372 (47%), Positives = 244/372 (65%), Gaps = 14/372 (3%)
Query: 215 FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAID 274
+ HPY+YEL + P L+ P + P+ + + + + +L+ ELK+ EIA+D
Sbjct: 30 YDHPYKYELQHFKPLSSQLEKPTPVKYGPIDPDSCIFVDQVNALHKLMDELKEASEIAVD 89
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
LE H+YRSYQG TCLMQ+STR KDYIVDT+ LR +L +LN+V + NI+KVFHGADSDI
Sbjct: 90 LEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRAELNILNQVFANPNIIKVFHGADSDII 149
Query: 335 WLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
WLQ+DFG+YVV +FDT QA + L + R SL YLL HYC+V +DK +QL DWR RPLP+
Sbjct: 150 WLQRDFGIYVVNLFDTGQAARALGLQRHSLDYLLTHYCNVQADKKYQLADWRIRPLPKEM 209
Query: 395 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN 454
+ YA+ DTHYLLYVYD M+LDL G L+ SR+IC LKYEKP+ N+ ++
Sbjct: 210 LLYAQGDTHYLLYVYDMMRLDLVKT--GDPGLLHKVIDKSRDICCLKYEKPITNDTSHLV 267
Query: 455 IFRSHALLNN------QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+ H QQ ALR ++ WRD +AR +DES GYVLPNHMLLQ+A+ +PR+
Sbjct: 268 LLEKHKRRGGKKDFRPQQIEALRLIFAWRDGLARQEDESCGYVLPNHMLLQIAEILPREA 327
Query: 509 QGIFACCNPVPQTVKEHVLDIHAIILKAR---LQSLTKPVEKLQ---PSLDGMKKKQQQQ 562
QG+ ACCNP+P +++HVL +H ++++AR +S +EK++ P+ ++
Sbjct: 328 QGVLACCNPIPPLLRQHVLAVHQLVVEARNKVFKSDNGGLEKVETRFPAPAKLEDDYSNL 387
Query: 563 VSPPHDSNNQQK 574
+ PHD + Q +
Sbjct: 388 LHCPHDLSFQSR 399
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 627
D QQ ALR ++ WRD +AR +DES GYVLPNHMLLQ+A+ +PR+ QG+ ACCNP+P
Sbjct: 280 DFRPQQIEALRLIFAWRDGLARQEDESCGYVLPNHMLLQIAEILPREAQGVLACCNPIPP 339
Query: 628 TVKEHVLDIHAIILKAR 644
+++HVL +H ++++AR
Sbjct: 340 LLRQHVLAVHQLVVEAR 356
>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
Length = 529
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 207/507 (40%), Positives = 290/507 (57%), Gaps = 50/507 (9%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTG 489
N QQ A + L+ WRD+ AR +DES G
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYG 529
>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
Length = 1045
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 206/559 (36%), Positives = 314/559 (56%), Gaps = 40/559 (7%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNI 82
D + + ++V K + + PS + S P + + + +++ L + ++++N
Sbjct: 21 DQFSKQLFGNLVAAAKISNNLPSEEDYSYYQTFPEFKNRMDHLGKRLLNLTQNFVQSEN- 79
Query: 83 SKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAK- 141
S L L D+ D+L E +DV+ G ++ K + +N+N
Sbjct: 80 --PKSDLLLTDTNDV-----DELSERFGGIVDVVDG-----MIDKVDKTIDPKYNQNQTN 127
Query: 142 ---ASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNA 198
+S V Q + KK ++N + G+ I RPQL+F+ VDNS F PK+K KPN+
Sbjct: 128 VFISSTVVQNQQNTKKSTSNEVNMFYGS-NIARPQLKFEDPVDNS-NFPFLPKIKTKPNS 185
Query: 199 LKPL---------------AILLEKYDAIESFCHPYEYELD--LYVPKEDFLKCEEPKQA 241
L L I+ +K F HPYEYE++ Y K++ C+E +
Sbjct: 186 LVDLDPIFLKSQPKEILYGKIIRDKEQETLIFPHPYEYEINNFKYTEKQN-QSCKEI-LS 243
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
L +TP I Q+ +L +L +E A+DLE+HNYRSYQG+ CLMQISTR +D+I+
Sbjct: 244 RGLEETPYTWIDSVRQLEELCDKLSHVEEFAMDLEHHNYRSYQGFVCLMQISTRGEDFII 303
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
DTL LR + +LN V T+ IVKV HG+DSDIKWLQ+DFG+Y+V MFDT QA + L P
Sbjct: 304 DTLALRSHIHMLNNVTTNPAIVKVLHGSDSDIKWLQRDFGIYIVNMFDTGQASRVLEYPS 363
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
SLA+LLK++C VD++K +QL DWR R +PE I+YAR DTHYLLY+YD ++ +L
Sbjct: 364 ASLAFLLKYFCAVDANKKYQLADWRIRKIPEEMIKYAREDTHYLLYIYDRLRNELINKGK 423
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRI 480
G NL+L SR + LKYEK + ++ ++ + L N Q L+ +Y WR+ +
Sbjct: 424 GSNNLLLEVLRRSRELALLKYEKEILDDNTHIQFAKKLNLQYNPVQLNVLKVIYHWREGL 483
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
AR++DES YVLPN M+ + ++ P +Q + A C+PVP ++K H + ILKAR++
Sbjct: 484 AREEDESVRYVLPNQMMFSIIENQPVTVQELIALCSPVPPSLKSHAHQLIQDILKARIED 543
Query: 541 LTKPVEKLQPSLDGMKKKQ 559
+K ++ P+L + + Q
Sbjct: 544 SSKQ-QQFMPALHNVLQSQ 561
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 635
L+ +Y WR+ +AR++DES YVLPN M+ + ++ P +Q + A C+PVP ++K H
Sbjct: 472 VLKVIYHWREGLAREEDESVRYVLPNQMMFSIIENQPVTVQELIALCSPVPPSLKSHAHQ 531
Query: 636 IHAIILKARLQPLTKPVEKLQPSL 659
+ ILKAR++ +K ++ P+L
Sbjct: 532 LIQDILKARIEDSSKQ-QQFMPAL 554
>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
Length = 790
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 207/532 (38%), Positives = 300/532 (56%), Gaps = 54/532 (10%)
Query: 56 PNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDV 115
P + S +DK+M +V L + L + + +L EAND++LE + ++D
Sbjct: 52 PAFTSFQRRVNDKIMKIVTDLNALHGRATKREPLPDDLVESML-EANDQILEGVGNKLDE 110
Query: 116 MAGTKTPS--VLP------SQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAV 167
+G + ++P ++ KI+ SWN+ + ++ + D K K A
Sbjct: 111 ASGINKDAGPIMPDGQITNAKEKIIAASWNRRSTST-----IQDKSKM--------KSAE 157
Query: 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL-------------------AILLEK 208
I +PQL F+ K DN+ F P+L EKP+A KPL IL E
Sbjct: 158 TISKPQLLFREKPDNTIIP-FVPRLFEKPHANKPLPEQLVNVNSDRHKTGKPLSMILKEL 216
Query: 209 YDAIES--FCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSEL 265
I++ + HPYE E+ VP + + L DTPL ++ ++ EL
Sbjct: 217 GTQIDTSIYSHPYEEEIKSCGVPS----ASDNVTEYKALDDTPLSVVESSLSFNLMMQEL 272
Query: 266 KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 325
+++ E+A+DLE+H YRSYQG+TCL+QIS+R KDYI+D L + ED+ LNEV + IVK+
Sbjct: 273 REESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYKLNEVFANPKIVKI 332
Query: 326 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDW 385
FHG+ +D+ WLQ+DFG+YVV +FDT A K L + ++SL YLL+HYC + DK FQL DW
Sbjct: 333 FHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADW 392
Query: 386 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKP 445
R RP+P ++YAR DTHYLLYVYD ++ DL G + F SR KYEKP
Sbjct: 393 RMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKLEFGATREI---FRLSREFSLSKYEKP 449
Query: 446 VFNEEGYMNIFRS--HALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
+F E Y ++ S NNQQ AL LY WRD+IAR +DEST YV+PNH+LLQ+++
Sbjct: 450 IFGESDYKKLYESKNRKKFNNQQLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEI 509
Query: 504 IPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGM 555
+PR+ QGI AC + P VK+H+ +H +I +AR L + + SL+ +
Sbjct: 510 LPREQQGILACFSYQPVIVKQHLHLLHKLIKRARETPLVADEDPAELSLNNI 561
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 64/93 (68%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NNQQ AL LY WRD+IAR +DEST YV+PNH+LLQ+++ +PR+ QGI AC + P V
Sbjct: 469 NNQQLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEILPREQQGILACFSYQPVIV 528
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGM 662
K+H+ +H +I +AR PL + + SL+ +
Sbjct: 529 KQHLHLLHKLIKRARETPLVADEDPAELSLNNI 561
>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
Length = 689
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 207/532 (38%), Positives = 300/532 (56%), Gaps = 54/532 (10%)
Query: 56 PNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDV 115
P + S +DK+M +V L + L + + +L EAND++LE + ++D
Sbjct: 52 PAFTSFQRRVNDKIMKIVTDLNALHGRATKREPLPDDLVESML-EANDQILEGVGNKLDE 110
Query: 116 MAGTKTPS--VLP------SQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAV 167
+G + ++P ++ KI+ SWN+ + ++ + D K K A
Sbjct: 111 ASGINKDAGPIMPDGQITNAKEKIIAASWNRRSTST-----IQDKSKM--------KSAE 157
Query: 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL-------------------AILLEK 208
I +PQL F+ K DN+ F P+L EKP+A KPL IL E
Sbjct: 158 TISKPQLLFREKPDNTIIP-FVPRLFEKPHANKPLPEQLVNVNSDRHKTGKPLSMILKEL 216
Query: 209 YDAIES--FCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSEL 265
I++ + HPYE E+ VP + + L DTPL ++ ++ EL
Sbjct: 217 GTQIDTSIYSHPYEEEIKSCGVPS----ASDNVTEYKALDDTPLSVVESSLSFNLMIQEL 272
Query: 266 KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 325
+++ E+A+DLE+H YRSYQG+TCL+QIS+R KDYI+D L + ED+ LNEV + IVK+
Sbjct: 273 REESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYKLNEVFANPKIVKI 332
Query: 326 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDW 385
FHG+ +D+ WLQ+DFG+YVV +FDT A K L + ++SL YLL+HYC + DK FQL DW
Sbjct: 333 FHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADW 392
Query: 386 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKP 445
R RP+P ++YAR DTHYLLYVYD ++ DL G + F SR KYEKP
Sbjct: 393 RMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKLEFGATREI---FRLSREFSLSKYEKP 449
Query: 446 VFNEEGYMNIFRS--HALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
+F E Y ++ S NNQQ AL LY WRD+IAR +DEST YV+PNH+LLQ+++
Sbjct: 450 IFGESDYKKLYESKNRKKFNNQQLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEI 509
Query: 504 IPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGM 555
+PR+ QGI AC + P VK+H+ +H +I +AR L + + SL+ +
Sbjct: 510 LPREQQGILACFSYQPVIVKQHLHLLHKLIKRARETPLVADEDPAELSLNNI 561
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 64/93 (68%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
NNQQ AL LY WRD+IAR +DEST YV+PNH+LLQ+++ +PR+ QGI AC + P V
Sbjct: 469 NNQQLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEILPREQQGILACFSYQPVIV 528
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGM 662
K+H+ +H +I +AR PL + + SL+ +
Sbjct: 529 KQHLHLLHKLIKRARETPLVADEDPAELSLNNI 561
>gi|384501951|gb|EIE92442.1| hypothetical protein RO3G_16964 [Rhizopus delemar RA 99-880]
Length = 599
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/553 (35%), Positives = 304/553 (54%), Gaps = 44/553 (7%)
Query: 30 YKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSM-SK 88
+KS+V T S P ++ + + + L +SLL+ + + +
Sbjct: 21 FKSLVSATAAVNSIPVGDVGYFRSLDRSFAKELDQATASALYLGNSLLEQCTLDAGIEAS 80
Query: 89 LYLEGQKDIL------TEANDKLLESINTRIDVMAGT--KTPSVLPSQPKIVKESWNKNA 140
E D++ + D LL+ + +D + G ++ + P++ + +
Sbjct: 81 TSFEDVDDVVRGYGSVIDVCDSLLDKADICLDHLKGKVKNEDELMQAAPEVTQIT----- 135
Query: 141 KASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALK 200
K + ++ +H NK + RPQ++FK VDNS FE K+K KP+A
Sbjct: 136 KENTEYKFLHANK---------------VIRPQMKFKDPVDNSNSTPFERKIKYKPHAQV 180
Query: 201 PLAILLEKYDAIE-SFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 259
PL + I+ S HPY YE+ E+ + EPKQ P +T + + +
Sbjct: 181 PLDDTPVIENGIQKSLPHPYTYEIQHVEYPENMFQIREPKQYEPFDNTSYIWVDTEAGLE 240
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
+++ L+ +EIA+DLE+HNYRSYQG+TCLMQ+STR++D+I+DTL+LR+ L LNE D
Sbjct: 241 EMMKALEDVEEIAVDLEHHNYRSYQGFTCLMQLSTRNQDFIIDTLELRDKLWRLNEYFAD 300
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
IVKV HGADSD+ WLQ+DFGLY+V +FDT+ K L P LAYLLK YC+ D+DK
Sbjct: 301 PTIVKVLHGADSDVIWLQRDFGLYLVNLFDTYFPTKVLEFPHHGLAYLLKRYCNYDADKK 360
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD-LSAAAHGKQNLVLSTFTNSRNIC 438
+QL DWR RPLP+ + YAR DTH+LLY+YDC++ + LSA++HG NL+ + S +
Sbjct: 361 YQLADWRIRPLPQEMLMYARADTHFLLYIYDCLRNELLSASSHGA-NLMQNCLQRSNEVA 419
Query: 439 KLKYEKPVFNEEGYMNIFRSHALL-------NNQQKYALRELYKWRDRIARDKDESTGYV 491
KY+K +++ +G + F +L N QQ + ++ WRD ARD+DES YV
Sbjct: 420 LQKYDKDIYDAQGGLGPFGWKNMLSKWKYSMNAQQLAVFKAIHAWRDHTARDEDESVRYV 479
Query: 492 LPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPS 551
LPNHML + + +P + G+ CNP P V+ + + +I KAR+ +L P P+
Sbjct: 480 LPNHMLFALVERMPTESSGVIGACNPCPPLVRMNAQALGLLIQKARMDALLAP-----PT 534
Query: 552 LDGMKKKQQQQVS 564
D +K+ +Q + S
Sbjct: 535 ADEVKETKQVEQS 547
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ + ++ WRD ARD+DES YVLPNHML + + +P + G+ CNP P V
Sbjct: 451 NAQQLAVFKAIHAWRDHTARDEDESVRYVLPNHMLFALVERMPTESSGVIGACNPCPPLV 510
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQ 670
+ + + +I KAR+ L P P+ D +K+ KQ +Q
Sbjct: 511 RMNAQALGLLIQKARMDALLAP-----PTADEVKETKQVEQ 546
>gi|405969148|gb|EKC34144.1| Exosome component 10, partial [Crassostrea gigas]
Length = 309
Score = 343 bits (879), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 159/301 (52%), Positives = 221/301 (73%), Gaps = 1/301 (0%)
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
+ DTPL ++ +++ ++ +L+++ +A+DLE+H+YRS+QG TCLMQIST D+++DT
Sbjct: 6 VEDTPLTFVSTVIELSSVIDKLRKEHIVAVDLEHHSYRSFQGITCLMQISTATDDFLIDT 65
Query: 304 LKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
L LR DL LNE+ T +VKVFHGADSDI WLQ+D GLYVV MFDT QA + L R S
Sbjct: 66 LALRNDLSPLNEIFTHPAVVKVFHGADSDIDWLQRDLGLYVVNMFDTGQAARVLNHSRFS 125
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
LA+L++HYCDV +DK +QL DWR RPLP ++YAR DTHYL Y+Y MK +L A + +
Sbjct: 126 LAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYAREDTHYLTYIYQRMKQELLARGNDQ 185
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIAR 482
+NL+LS S IC Y+K VF E+ Y+ ++R S + N++Q AL++LY+WRD++AR
Sbjct: 186 KNLLLSVLQRSTEICAKVYKKQVFKEDSYLELYRKSKKVFNSRQLQALQKLYQWRDKLAR 245
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 542
+DESTGYVLPNHM+LQ+A +PR+ QGIFACCNP+P V++ + +IH+ IL+AR L
Sbjct: 246 QEDESTGYVLPNHMILQIADILPREQQGIFACCNPIPPLVRQFLPEIHSFILEAREAPLL 305
Query: 543 K 543
K
Sbjct: 306 K 306
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 67/81 (82%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q AL++LY+WRD++AR +DESTGYVLPNHM+LQ+A +PR+ QGIFACCNP+P V
Sbjct: 226 NSRQLQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILPREQQGIFACCNPIPPLV 285
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + +IH+ IL+AR PL K
Sbjct: 286 RQFLPEIHSFILEAREAPLLK 306
>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
Length = 518
Score = 342 bits (876), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 154/273 (56%), Positives = 205/273 (75%), Gaps = 1/273 (0%)
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
+H+YR++QG+TCLMQISTR DY+VDTL LR +L +LNEV + I+KV HGAD D+ WL
Sbjct: 40 HHSYRTFQGFTCLMQISTRSSDYVVDTLALRHELHLLNEVFANPKIIKVLHGADMDVLWL 99
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+DFGLY+VG+FDT QA + L M SLA+LL+HYC +D+DK FQL DWR RPLP I+
Sbjct: 100 QRDFGLYLVGLFDTGQAARVLGMAHLSLAFLLRHYCHLDTDKKFQLADWRIRPLPLEMIK 159
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF 456
YAR DTHYLL+VYD M+ DL A + NL+ S F S+ +C +YEKP++ E+ Y+ ++
Sbjct: 160 YAREDTHYLLHVYDLMRRDLLAKGNQLNNLLHSVFQRSKQVCLKRYEKPLYTEDSYLELY 219
Query: 457 R-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
R S N++Q YALR LY WRDRI+R +DESTGYVLPNHM+LQ+++ +PR+ QGI ACC
Sbjct: 220 RKSKKAFNSKQLYALRHLYSWRDRISRLEDESTGYVLPNHMILQISEILPREQQGIIACC 279
Query: 516 NPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
NP P V++++ ++H+IILKAR L + E L
Sbjct: 280 NPCPPLVRQNLNELHSIILKARDTPLNQKNEAL 312
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 69/86 (80%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q YALR LY WRDRI+R +DESTGYVLPNHM+LQ+++ +PR+ QGI ACCNP P V
Sbjct: 227 NSKQLYALRHLYSWRDRISRLEDESTGYVLPNHMILQISEILPREQQGIIACCNPCPPLV 286
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKL 655
++++ ++H+IILKAR PL + E L
Sbjct: 287 RQNLNELHSIILKARDTPLNQKNEAL 312
>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
Length = 945
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/577 (33%), Positives = 293/577 (50%), Gaps = 73/577 (12%)
Query: 31 KSIVKCTKTAQSFPSTHEN-SLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKL 89
+S+V T+ + + P+ + ++ P + + G ++ T++ L+ + S
Sbjct: 10 QSLVAATRASNAIPAAGNDFEFYMSYPGFRERMNGLRGRLQTMITRLVNHDRAGSTRSFY 69
Query: 90 YLEGQKDILTEANDKLLESINTRIDVMAG------------------------------- 118
+ D + E D LE ++ +D +G
Sbjct: 70 DDDALFDAVVEQLDTTLERVDNTLDATSGRSSTAAAAAASVAARAAQSGADGRTHASAAD 129
Query: 119 ----TKTPSVLP-SQPKIVKESWNKNAKAS---NVWQEVHDNKKKSANWFMLNKGAVEIE 170
T T S P ++ + ES + S N Q +K + +L+ A I
Sbjct: 130 KALMTSTGSASPMTRRGLSDESPIGSPSGSPKPNGKQPAPGKGRKGGEFVVLH--AKGIA 187
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNAL---------------------KPLAILLEKY 209
RPQL F +VDNS F P + P L +PL +L +
Sbjct: 188 RPQLTFADRVDNS-NVPFVPLVPLAPATLAQLTPLQREYMAYAEQQRKEARPLGVLQNTF 246
Query: 210 DA-------IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLV 262
+ + SF HPYE EL + P E L + +TP I E++
Sbjct: 247 NPKVPFAHDLGSFPHPYERELLAFEPAETQLTAVAEQLYRTDEETPFTWIDSEEELIDFA 306
Query: 263 SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNI 322
L E AIDLE+H+YRS QG+ CLMQ+STR +D ++DTL +R + L EV + NI
Sbjct: 307 RRLSSVSEFAIDLEHHSYRSLQGFVCLMQVSTRTEDVVIDTLAVRSSMHHLREVFANPNI 366
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 382
+KVFHGAD D+ WLQ DFG+Y + MFDT QA + L + SLA+LL+++C+V +DK +QL
Sbjct: 367 LKVFHGADMDVVWLQHDFGIYTINMFDTGQAARVLELGSYSLAHLLRYFCNVTADKKYQL 426
Query: 383 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKY 442
DWR RP+P +QYAR DTHYLLY+YD ++ +L + ++ NL+ + SR++C Y
Sbjct: 427 ADWRIRPIPAEMLQYAREDTHYLLYIYDRLRNELVSRSNESSNLLRVAYAKSRDVCLKTY 486
Query: 443 EKPVFN-EEGYMNIFRSHA-LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQM 500
EKP+F+ E +M +F H+ QQ + L+ WRDR+ R++DESTGYVLPNHML +
Sbjct: 487 EKPLFDPENSHMQLFLKHSRTFGPQQMQVFKALFAWRDRMGREEDESTGYVLPNHMLFHI 546
Query: 501 AQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
A+++P + GI ACC PVP V+ HV D+ +I +AR
Sbjct: 547 AEALPTESAGILACCIPVPPLVRLHVTDLVQLIKRAR 583
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ + L+ WRDR+ R++DESTGYVLPNHML +A+++P + GI ACC PVP V+
Sbjct: 511 QQMQVFKALFAWRDRMGREEDESTGYVLPNHMLFHIAEALPTESAGILACCIPVPPLVRL 570
Query: 632 HVLDIHAIILKAR 644
HV D+ +I +AR
Sbjct: 571 HVTDLVQLIKRAR 583
>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
Length = 860
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 199/532 (37%), Positives = 310/532 (58%), Gaps = 40/532 (7%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIAS--PNYISGVAGTSDKVMTLVDSLLKTQN-------- 81
++ + K +Q FP + + + + P Y + G S K+++++ ++L +
Sbjct: 26 TVARAVKLSQEFPVSDTPAFIYYNDFPQYKAIATGQSKKILSILQNILDILDAKANILDV 85
Query: 82 -ISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAG-TKTPSVLPSQPKIVKESWNKN 139
++KS+S+ + + +AND++LE + +D + L ++ + + + ++
Sbjct: 86 PVNKSISEKFTS-----IVDANDRILEKLAMAMDFEEDPQRKEFFLKTKSEDLVVAVHRK 140
Query: 140 AKASNVW----QEVHDNKKKSANWF---MLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
+ S W ++ +++ + F + + I RPQ+ F DNSY F PK+
Sbjct: 141 STTSLEWLKPKNSTEESNERTTDLFENSLKLLSSKHIVRPQISFSTPPDNSYSP-FRPKI 199
Query: 193 KEKPNALKPLAILLEKYDAIES--FCHPYEYELDLY---VPKEDFLKCEEPKQALPLSDT 247
K KPN ++PL L +A ES + HPY+ EL+ + VP + + ++ PL D+
Sbjct: 200 KSKPNCIQPLPKSLSN-NADESIEYLHPYQVELEAFANNVPNWNAMLSDD-FTVKPL-DS 256
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
I + + + Q V L + IA+DLE+H+YRS+ G TCL+QIST D DYI+D L L
Sbjct: 257 SYQYIDKLDTLEQTVKSLSVCRYIAVDLEHHSYRSFLGITCLIQISTLDTDYIIDALALH 316
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
+ L +LNEV TD IVKVFHG+DSD+ WLQ+DFG+YVV +FDT A + L R SL+YL
Sbjct: 317 DHLSILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGVAARLLQHGRFSLSYL 376
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
L+ Y +++ +K +QL DWR RPLP I+YARTDTHYLL++ M +L +NL+
Sbjct: 377 LQRYVNINPNKKYQLADWRIRPLPNELIEYARTDTHYLLHIASRMCRELQ-----DRNLL 431
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL--LNNQQKYALRELYKWRDRIARDKD 485
TF +R +C Y KPVFN GY+++++ +++Q YAL L+ RD IAR +D
Sbjct: 432 SVTFERARQLCLKCYTKPVFNRLGYLDLYKQTGCSSFSHRQLYALENLHALRDSIARRED 491
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
ES YVLPNHML +A+ +PR+ G+FACCNP+P V+++V D H IIL AR
Sbjct: 492 ESLHYVLPNHMLKVIAEVLPRESSGVFACCNPIPPLVRKYVHDFHKIILDAR 543
>gi|440797552|gb|ELR18636.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 929
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 187/467 (40%), Positives = 274/467 (58%), Gaps = 45/467 (9%)
Query: 96 DILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKK 155
+ + ++ D LLE ++ D G ++PK+V + K +
Sbjct: 105 EAVVDSTDLLLEKVDNFADEARGQS------NRPKVVVSTTTTQEKGRD----------- 147
Query: 156 SANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK--EKPNALKPLAIL--LEKYDA 211
F L G+ + RPQLQFK VDN++ + ++P P A+ LE + +
Sbjct: 148 ----FHLFHGS-NVLRPQLQFKDPVDNTHTPWMPVPYRNGQRPTPAPPSALPKDLETHMS 202
Query: 212 I--------ESFC---HP-YEYELDL-YVPKEDFLKCEEPKQAL---PLSDTPLMM--IT 253
ESF HP YE +L Y+P + E+P Q L P + TP ++ +
Sbjct: 203 TQLGITLPEESFSMYPHPFYEQLANLEYLPSQLGSCIEQPFQPLENIPFTFTPDIINQVA 262
Query: 254 EPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVL 313
+ + + +L Q E A+DLE+H+YR++QG+TCLMQISTR +D+IVDTL LRE + +L
Sbjct: 263 TVKDLKDVAQKLDAQTEFAVDLEHHSYRTFQGFTCLMQISTRTEDFIVDTLALREHMHLL 322
Query: 314 NEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCD 373
+ D NIVKVFHG+DSDI WLQ+DFGLYV+ MFDT QAC+ L P SLAYLL+H+C
Sbjct: 323 SSSFHDANIVKVFHGSDSDIMWLQRDFGLYVINMFDTGQACRVLEYPSFSLAYLLRHHCG 382
Query: 374 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTN 433
V +DK +QL DWR RPLPE ++YAR DTHYLL++YD ++ +L A+ NL+L+
Sbjct: 383 VLADKKYQLADWRIRPLPEEMLKYAREDTHYLLFIYDKLRNELIGRANMSNNLILAVLNR 442
Query: 434 SRNICKLKYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVL 492
SR +C L+YEKP++ +++++ R + + N QQ +YKWRD +AR++DES YVL
Sbjct: 443 SRELCLLQYEKPLWTPTSHLSLYNRFNYVFNEQQMRVFAAVYKWRDTVAREEDESYRYVL 502
Query: 493 PNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
PNHML +A+ +P + + ACCNPVP V+ + + +I AR +
Sbjct: 503 PNHMLFHIAELVPTSVPALLACCNPVPPLVRINAEILVDVITAARAE 549
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ +YKWRD +AR++DES YVLPNHML +A+ +P + + ACCNPVP V
Sbjct: 473 NEQQMRVFAAVYKWRDTVAREEDESYRYVLPNHMLFHIAELVPTSVPALLACCNPVPPLV 532
Query: 630 KEHVLDIHAIILKARLQP 647
+ + + +I AR +P
Sbjct: 533 RINAEILVDVITAARAEP 550
>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
Length = 890
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/486 (37%), Positives = 284/486 (58%), Gaps = 14/486 (2%)
Query: 1 MSDTNQEIPKSDEANKELSKTFDVLVQ---NAYKSIVKCTKTAQSFPSTHENSLLIASPN 57
M D QE P+ + E+ + + Q + +K +++ K + + PS + S +
Sbjct: 1 MGDKAQEHPEGASKDSEIIPGYSSMEQFTKDGFKVLMEAIKHSNALPSGRDWDFYNISDS 60
Query: 58 YISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMA 117
+ + + V+ L++ +++ ++ ++ L+ + +++ EAND +LE + ID M
Sbjct: 61 FKEIMKVEGNHVLRLMNQVMRCNDLDSNLRNRVLDEKIELVIEANDIILEKVANNIDEMN 120
Query: 118 GTKTPSVLP------SQPKIVKESWNKNAKAS-NVWQEVHDNKKKSANWFMLNKGAVEIE 170
G + V P S V SWN+ A+ V V ++ ++ + K +
Sbjct: 121 GIRKTVVAPVVLQTVSAQLPVNGSWNRQTAATVTVSSVVPESSGQNCIKLITAKNII--- 177
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE 230
RPQ FK ++DN + + P++ EKPN+LKPLAI LE+Y+ + + HPYE+ELD + P
Sbjct: 178 RPQKFFKDQIDNRNKTPWSPRITEKPNSLKPLAIFLEEYEDRQEYSHPYEFELDRFQPTP 237
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLM 290
L E+ LSDTPL+ I + EQ+ +LV L+ +E ++D+E+H+YRS+ G TCL+
Sbjct: 238 SQLIDEKSVPPKSLSDTPLIEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLI 297
Query: 291 QISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
QIST DKDY++D L LR+ L +LNEV T IVK+FHGAD DI+WLQ+D LYVV MFDT
Sbjct: 298 QISTEDKDYLIDALALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDT 357
Query: 351 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 410
HQA K L P SLA+L+K +C+V +K FQL DWR RPLP+ YAR DTHYL+Y+Y
Sbjct: 358 HQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYK 417
Query: 411 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYA 469
MK +L + L+ S S +CK +Y KP+ +E+ ++ ++R + +N+Q
Sbjct: 418 MMKRELLHKTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDNRQMSH 477
Query: 470 LRELYK 475
L EL++
Sbjct: 478 LLELHQ 483
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 632 HVLDIHAIILKARLQPLTKPVEKLQPS---LDGMKKKKQQQQVSPPHDSMDCLNYKGLPP 688
H+L++H IILKAR QPL K + K L M K + PHD ++ P
Sbjct: 477 HLLELHQIILKAREQPLEKAILKETSGRGVLKEMSKVNMDSVLHCPHDLTKTNEFRDDLP 536
Query: 689 VFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRF 748
N N ++ D +K + +F D+ ++ KL TS + +PY+R+
Sbjct: 537 TLLQNEQYKAENKRVAQVDLAIEKPSSYSIFNSDQGFKPGEAFK--KLHTSAYLSPYERY 594
Query: 749 -------LKSKEYAKAIQEKVDKENAEQ 769
+ E AKA +EK +K + E+
Sbjct: 595 KLVKPFVVAEDEAAKAQKEKDEKTDDER 622
>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
Length = 669
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/393 (45%), Positives = 248/393 (63%), Gaps = 32/393 (8%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL---AILLEKYDAIES----------- 214
I++PQL FK VDN++ + F PK+ KPNALKPL +LL D I
Sbjct: 18 IKKPQLMFKDAVDNTHAR-FIPKISNKPNALKPLPKELVLLNSQDNISKNESNSLAISNL 76
Query: 215 ------FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
+ HPY+YEL+ + P L+ P ++ P+ + + + L+ ELKQ+
Sbjct: 77 IHSEAVYDHPYQYELENFKPLSSQLEKPTPIKSGPVDTDSCIFVDGVNGLNMLIRELKQE 136
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
EIA+DLE H++RSYQG TCLMQ+STR DYIVDTL LR +L +LN+V T+ IVKVFHG
Sbjct: 137 SEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRANLNILNQVFTNPKIVKVFHG 196
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
AD DIKWLQ+DFG+YVV +FDT QA + L + S YLLKHYC V+SDK +Q DWR R
Sbjct: 197 ADQDIKWLQRDFGVYVVNLFDTGQAARVLELGL-SREYLLKHYCKVESDKKYQKADWRER 255
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL + ++YA+ DTHYLLY+YD MKLDL A G L+ NSR+IC LKYEK + +
Sbjct: 256 PLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKA-GGVGLMHKVIGNSRDICLLKYEKLIID 314
Query: 449 EEGYMNIFRSHAL----LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
+ ++ + R A Q+ ALR +Y WRD +AR KDES GY++PN ML+Q+A+++
Sbjct: 315 DTSHLKLLRKGAGKIEDWEPQELEALRLIYMWRDELARQKDESCGYIMPNKMLVQIAKTL 374
Query: 505 PRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
P+ +Q + + +++V IH +I++AR
Sbjct: 375 PQTVQDV-----RLQGVWQQYVPTIHQLIVEAR 402
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 134/229 (58%), Gaps = 27/229 (11%)
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+FDT QA + L + SL YLLKHYC V+SDK FQ DWR RPL + ++YA+ DTHYLL
Sbjct: 430 LFDTGQAARELKLG-CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHYLL 488
Query: 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL----L 462
Y+YD MKLDL A G L+ NSR+IC LKYEK + ++ + + R A
Sbjct: 489 YIYDMMKLDLLEKA-GDAKLMRKVIGNSRDICLLKYEKLIIDDTSHRKLLRKGAGKIEDW 547
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
Q+ ALR +Y WRD++AR DES GYVLPN +L+Q+A+++P+ Q + +
Sbjct: 548 EPQELEALRLIYMWRDKLARQMDESCGYVLPNKLLVQIAKTMPQTEQDL-----RLQGVR 602
Query: 523 KEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNN 571
+++V IH +I++A V K +PS + P HDS+N
Sbjct: 603 QQYVQTIHQLIVEA-----GNKVFKSEPSSE-----------PLHDSSN 635
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 5/73 (6%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
Q+ ALR +Y WRD +AR KDES GY++PN ML+Q+A+++P+ +Q + + ++
Sbjct: 335 QELEALRLIYMWRDELARQKDESCGYIMPNKMLVQIAKTLPQTVQDV-----RLQGVWQQ 389
Query: 632 HVLDIHAIILKAR 644
+V IH +I++AR
Sbjct: 390 YVPTIHQLIVEAR 402
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
Q+ ALR +Y WRD++AR DES GYVLPN +L+Q+A+++P+ Q + + ++
Sbjct: 550 QELEALRLIYMWRDKLARQMDESCGYVLPNKLLVQIAKTMPQTEQDL-----RLQGVRQQ 604
Query: 632 HVLDIHAIILKA 643
+V IH +I++A
Sbjct: 605 YVQTIHQLIVEA 616
>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
Length = 1011
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 194/540 (35%), Positives = 298/540 (55%), Gaps = 29/540 (5%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S T + +N Y +++ K + P ++S P + + + +++ L + +
Sbjct: 34 SDTLESFQKNLYGNLISAIKISNQLPVEEDHSYYSTYPAFKNKMNDFGKRLLNLTQNFVN 93
Query: 79 TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNK 138
++ K+ L+ +I + D++ E + +DV+ G V ++ K +
Sbjct: 94 AED-PKNQDNLF----SNIDVDDVDEISERFPSIVDVVDGI-IDKVDNFTDRLDKPQNQQ 147
Query: 139 NAKA--SNVWQEVHDNKKKS--ANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKE 194
A NV+ KS +N F + G V I+RPQL+F+ +DNS F PK++E
Sbjct: 148 QGSAIQPNVYLASTTTVSKSGKSNEFNMFYG-VNIQRPQLKFEDPIDNS-NFPFLPKIQE 205
Query: 195 KPNALKPLAILLEKY-------DAIES-------FCHPYEYELD-LYVPKEDFLKCEEPK 239
KPN++ PL L EK I + F HPYEYEL+ L + C E
Sbjct: 206 KPNSMVPLDALFEKSRVEIVHGKVIRTKEQEKIVFPHPYEYELNHLQFLAKQIQSCRE-N 264
Query: 240 QALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDY 299
L +T + +Q+ L +L Q +E A+DLE HNYRS+QG+ CLMQ+STR +D+
Sbjct: 265 LYKGLDETAYTWVDRVDQLAALTEKLNQVEEFAVDLEAHNYRSFQGFVCLMQVSTRTEDF 324
Query: 300 IVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM 359
IVDTL LR +++LN T+ IVKV HG++SD+KWLQ+DFG+Y+V MFDT QA + L
Sbjct: 325 IVDTLVLRSHMKMLNVPFTNPKIVKVLHGSESDVKWLQRDFGIYIVNMFDTGQASRILEY 384
Query: 360 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
P SLA+LL+ YC VD++K FQL DWR RP+PE I+YAR DTHYLLY+YD ++ +L
Sbjct: 385 PSASLAFLLRFYCGVDANKKFQLADWRIRPVPEEMIKYAREDTHYLLYIYDRLRNELVLK 444
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNN-QQKYALRELYKWRD 478
N ++ S+ IC +KYEK + +E + + + + N Q R LY WR+
Sbjct: 445 GKSTNNYLMEVLRRSKEICLIKYEKDILDENSHAEYLKKNGITYNPAQLKIFRLLYNWRE 504
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
++ARD DES Y+LPN M+ + + P I + ACC P+P +K++ ++ IL++R+
Sbjct: 505 KVARDDDESVRYILPNSMMQLIVEKQPTTITDLLACCTPIPPYIKQYGHELLQDILRSRI 564
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q R LY WR+++ARD DES Y+LPN M+ + + P I + ACC P+P +
Sbjct: 489 NPAQLKIFRLLYNWREKVARDDDESVRYILPNSMMQLIVEKQPTTITDLLACCTPIPPYI 548
Query: 630 KEHVLDIHAIILKARL 645
K++ ++ IL++R+
Sbjct: 549 KQYGHELLQDILRSRI 564
>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
gi|353232486|emb|CCD79841.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
Length = 830
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 204/551 (37%), Positives = 307/551 (55%), Gaps = 71/551 (12%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIAS--PNYISGVAGTSDKVMTLVDSLLKTQN-------- 81
++ + K +Q FP + + + + P Y + AG S K+++++ ++L +
Sbjct: 26 TVARAVKLSQEFPVSDTPAYIYYNDFPQYKAIAAGQSKKILSILQNVLDILDAKANILDV 85
Query: 82 -ISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNA 140
++KSM + + + +AND++LE
Sbjct: 86 PVTKSMHEKFTS-----IIDANDRILE--------------------------------- 107
Query: 141 KASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALK 200
K SN +E ++ S N L + I RPQ F DNSY F PK+K KPN ++
Sbjct: 108 KLSN--EETNEGVDLSENSLKL-LSSKYIVRPQTSFATPPDNSYSS-FRPKIKSKPNCIQ 163
Query: 201 PLAILLEKYDAIES--FCHPYEYELDLY---VPKEDFLKCEE-PKQALPLSDTPLMMITE 254
PL LL D ES + HPY+ EL+ + +P + + E+ P + L D+ +
Sbjct: 164 PLPELLSN-DNGESTDYPHPYKVELETFGNNLPSLNEMMSEDFPVKPL---DSSYQYVDT 219
Query: 255 PEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLN 314
+ + Q++ L + IA+DLE+H+YRS+ G TCL+Q+ST DYI+D L LR+ L +LN
Sbjct: 220 LDTLEQIMKSLSMCKYIAVDLEHHSYRSFLGITCLIQMSTLGSDYIIDALALRDHLSILN 279
Query: 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV 374
EV TD IVKVFHG+DSD+ WLQ+DFG+YVV +FDT A + L R SL+YLL+ + +
Sbjct: 280 EVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQYGRFSLSYLLQRFVGI 339
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
++K +QL DWR RPLP I+YAR+DTHYLL++ M +L ++L+ +
Sbjct: 340 YANKKYQLADWRIRPLPNELIEYARSDTHYLLHIASRMCRELQ-----DRDLLSVAIERA 394
Query: 435 RNICKLKYEKPVFNEEGYMNIFR--SHALLNNQQKYALRELYKWRDRIARDKDESTGYVL 492
R +C Y KPVFN GY++++R + +++Q YAL LY RD IAR +DES YVL
Sbjct: 395 RQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHRQLYALENLYALRDSIARREDESLHYVL 454
Query: 493 PNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK-PVEKLQPS 551
PNHML +A+ +PR+ GIFACCNP+P V+++V D+H II+ AR +T P+ +P
Sbjct: 455 PNHMLKVIAEVLPRESSGIFACCNPIPPLVRKYVHDLHKIIVDARNLPITDLPLTSEEPR 514
Query: 552 LDGMKKKQQQQ 562
L QQQ+
Sbjct: 515 LSTQPNSQQQE 525
>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
Length = 451
Score = 332 bits (851), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 188/423 (44%), Positives = 260/423 (61%), Gaps = 40/423 (9%)
Query: 165 GAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL--------EKYD------ 210
GA I RPQL FK +DNS E L+ PK+ +KPN +KPLA+ + K+D
Sbjct: 8 GAKNIPRPQLTFKDTIDNS-ENLWVPKISDKPNNIKPLALNILYTEKGEASKFDYRGTTS 66
Query: 211 --------AIESFC----HPYEYELDLYVPKEDFL--KCEEPKQALPLSDTPLMMITEPE 256
I C HPY+ ELD+Y P F+ E P PL +T I
Sbjct: 67 IHNDVIIKTIIKICNRYEHPYQMELDMYNPPSQFIDPDPEPPMFPPPLEETKFTYIDIES 126
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGY------TCLMQISTRDK-DYIVDTLKLRED 309
++ +LV L ++IA+D+E+H+YR G TCL+QIST + D+I+D L +RE
Sbjct: 127 KLDELVEHLMAVEQIAVDVEHHSYRDLSGLYLILGITCLIQISTDEGGDFIIDALAVREH 186
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
+ LN V TD +KVFHGADSD+ WLQ+DFG+Y+VG+FDT+ A K L +P SL +LL
Sbjct: 187 IHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLM 246
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
YC VD+DKT++L DWR RPLP+ I+YAR DTHYLLYV+ MK + G+ N++LS
Sbjct: 247 KYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNAGQTNMLLS 306
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F +SR C Y K V ++E ++ ++ RS +NQQ AL+ LYKWRD AR DEST
Sbjct: 307 VFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQARQLDEST 366
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
Y+LPNHMLL +++++PR++QG+ ACC+P+P VK++V+ IH +IL S ++KL
Sbjct: 367 TYLLPNHMLLSLSENLPRELQGVNACCDPMPPFVKQNVITIHRMILSV---SFLISIKKL 423
Query: 549 QPS 551
S
Sbjct: 424 VAS 426
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 58/74 (78%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+NQQ AL+ LYKWRD AR DEST Y+LPNHMLL +++++PR++QG+ ACC+P+P V
Sbjct: 341 DNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLPRELQGVNACCDPMPPFV 400
Query: 630 KEHVLDIHAIILKA 643
K++V+ IH +IL
Sbjct: 401 KQNVITIHRMILSV 414
>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
Length = 837
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 191/550 (34%), Positives = 295/550 (53%), Gaps = 50/550 (9%)
Query: 21 TFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ 80
TF+ +++ TK + P H++ + + D++ L+ + L
Sbjct: 17 TFEDFNTALSSALITGTKASHQLPKNHDHDFHMMEAGFKERAIKLQDRLARLLHASLDAI 76
Query: 81 NISKSMSKLY---LEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWN 137
++ L+ D L+ + D + E ++ D + G + + + +K S +
Sbjct: 77 GPEGGVAAGLPSDLDDIHDALSTSLDAVYERVDIACDEVLGARE-----KERQALKSSTS 131
Query: 138 KNA--KASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
+ S W N+ + N + A ++RPQL+F+V VDNS F P+L EK
Sbjct: 132 STTLQRRSGAW-----NQSSARNAVTVMH-AQNVQRPQLRFQVPVDNSATP-FVPRLVEK 184
Query: 196 PNALKPLAILL---------------------------EKYDAIESFC-HPYEYELDLYV 227
P+A PL + L + +++C HPY EL+ +
Sbjct: 185 PHASAPLDLTLVPVGSTSTGGEADSLMVDHLEKLGLRDQANTGFDTYCPHPYLTELNEFE 244
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
+ L+ E + L T + E + L+ LK E+AIDLE H+YR+YQG+T
Sbjct: 245 VPQHQLQPHEERLYGDLEQTTCTWVGTREALVGLIERLKSVSELAIDLEAHSYRTYQGFT 304
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CLMQ+STR +DY++DTL LR+DL++LN + D I+KV HGADSDI WLQ+D LY+V M
Sbjct: 305 CLMQLSTRSEDYLIDTLALRDDLKLLNVIFADPAILKVLHGADSDILWLQRDHSLYIVNM 364
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDT QA + L PR SLA+LL+HYC+ +DK +QL DWR RPL E + YAR DTH+LLY
Sbjct: 365 FDTGQATRVLNFPRHSLAWLLQHYCNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLY 424
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE---EGYMNIFRSHALLNN 464
+YD + +L A + + NL+ + + S+ +C +YEKP +++ E +N S +L+ +
Sbjct: 425 IYDRLHSELLAQGNEQANLLRAVYQRSKELCLQRYEKPFYSQATAEDALNRM-SRSLVPS 483
Query: 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+ + L+ WRD++ARD+DES YVLP+HMLL++A P + I ACC P+P V+
Sbjct: 484 AVELFM-ALHAWRDQVARDEDESPRYVLPDHMLLELASRAPTETGQILACCQPIPPLVRV 542
Query: 525 HVLDIHAIIL 534
+V I IIL
Sbjct: 543 NVQLIQDIIL 552
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI 639
L+ WRD++ARD+DES YVLP+HMLL++A P + I ACC P+P V+ +V I I
Sbjct: 491 LHAWRDQVARDEDESPRYVLPDHMLLELASRAPTETGQILACCQPIPPLVRVNVQLIQDI 550
Query: 640 IL 641
IL
Sbjct: 551 IL 552
>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
Length = 1195
Score = 325 bits (833), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 198/564 (35%), Positives = 309/564 (54%), Gaps = 66/564 (11%)
Query: 30 YKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKL 89
+ +V+ K + + PS + S P + + +++ L + ++++N +S
Sbjct: 26 FGGLVQAAKLSNNLPSEEDYSYYETFPEFKLKMNSLGKRLLNLAQNFVQSENPKSDLS-- 83
Query: 90 YLEGQKDILTEAND--KLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQ 147
LT+ ND L + + +D++ G ++ K + +N+N +
Sbjct: 84 --------LTDTNDVDDLSDRFSGIVDIVDG-----MIDKVDKTIDPKYNQNQTNIFISS 130
Query: 148 EVH-DNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL 206
+ N KK+ N + G I RPQ +F+ DN+ F PK++ KPNA+ L +
Sbjct: 131 TIQPGNSKKAGNEINMFYGN-NIVRPQHKFEDPFDNN-NFPFLPKIRSKPNAMVELDEVF 188
Query: 207 EKY--------DAIES-------FCHPYEYELDLY-VPKEDFLKCEEPKQALPLSDTPLM 250
+K I S F HPYEYE++ + ++ +C+E A L +TP
Sbjct: 189 KKSIPKEISFGKIIRSKEQEGIIFPHPYEYEINNFKYTEQQTQQCKE-ILARGLDETPFT 247
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ Q+ +LV +L QEIAIDLE+H+YR+YQG+TCLMQISTR +D+++DTL LR +
Sbjct: 248 WVETVRQLEELVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLLRSHI 307
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
+LN+V T+ +IVKV HG+DSDIKWLQ+DFG+Y+V MFDT QA + L P SLA+LLK
Sbjct: 308 HMLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYPSASLAFLLKF 367
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN----- 425
YC +D++K +QL DWR R LPE I+YAR DTHYLLY+YD ++ +L + G +N
Sbjct: 368 YCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNEL--ISKGNKNLGSSG 425
Query: 426 ----------------LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKY 468
L+L SR + L+YEK + ++ ++N + L + Q
Sbjct: 426 TSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDDNSHINFAKKLNLQYSPTQLN 485
Query: 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 528
L+ LY WR+ +ARD+DES Y+LPN M+L + + P +Q + C+P+P ++K+H
Sbjct: 486 VLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHSHQ 545
Query: 529 IHAIILKARLQSLTKPVEKLQPSL 552
+ ILKAR++ +K QPS
Sbjct: 546 LIQEILKARIEDPSK-----QPSF 564
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 635
L+ LY WR+ +ARD+DES Y+LPN M+L + + P +Q + C+P+P ++K+H
Sbjct: 486 VLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHSHQ 545
Query: 636 IHAIILKARLQPLTKPVEKLQPSL 659
+ ILKAR++ +K QPS
Sbjct: 546 LIQEILKARIEDPSK-----QPSF 564
>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
Length = 497
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 269/474 (56%), Gaps = 49/474 (10%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR 457
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R
Sbjct: 443 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYR 496
>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10-like, partial [Taeniopygia guttata]
Length = 504
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 187/473 (39%), Positives = 275/473 (58%), Gaps = 48/473 (10%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A ++V TK + P E + P + + SD+++ + +++
Sbjct: 38 DAFVKYALGTVVAATKASNGLPQPGDEYDFYRSFPGFRAFCNTQSDRLLRCMSQVMQYHG 97
Query: 79 TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
+++ K SK+ LE + D+L ++ND +LE ++ +D +G VLP+ P+++
Sbjct: 98 CRSLMKDSSKVTGLEDKFDMLVDSNDVILERVSILLDEASGVNRNQQPVLPAGLQPPQMI 157
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A E H + +S + +L+ A I RPQL+F+ K+DNS F PKL
Sbjct: 158 VSSWNRKAG------EFH-KRTQSETFRLLH--AKNISRPQLKFREKIDNS-NTPFVPKL 207
Query: 193 KEKPNALKPLAILLEK------------------YDAI----------ESFCHPYEYELD 224
KPNALKPL L K D I + F HPY+YEL+
Sbjct: 208 FIKPNALKPLPEALTKSGRQRKERPEDLDVPAALADFIHQQRTQKTEQDMFAHPYQYELE 267
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ P ++ LK E + P+ +TP IT +++ +L +L +E A+DLE+H+YRS+
Sbjct: 268 HFSPPDEVLKKPELQMYRPIEETPCHFITTLDELVELNEKLMTCKEFALDLEHHSYRSFL 327
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G TCLMQISTR +D+I+DTL LR D+ +LNE TD IVKV HGADSD++WLQ+DFGLY+
Sbjct: 328 GLTCLMQISTRTEDFIIDTLALRSDMNILNETFTDPAIVKVLHGADSDVEWLQRDFGLYL 387
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDTHQA + L + R SL +LLK YC VD+DK +QL DWR RPLPE I+YAR DTHY
Sbjct: 388 VNVFDTHQAARLLNLGRHSLDHLLKLYCGVDADKKYQLADWRIRPLPEEMIRYARDDTHY 447
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR 457
LLY+YD ++ L + + + SR+IC KY KP+F +E Y++++R
Sbjct: 448 LLYIYDKVRELLWERGKEQPTQLQVVWQRSRDICLKKYIKPLFTDESYLDLYR 500
>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
Length = 845
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 202/552 (36%), Positives = 297/552 (53%), Gaps = 37/552 (6%)
Query: 23 DVL--VQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKT 79
D+L V+N V+ A + P E L AS P Y + + ++ ++ LL+
Sbjct: 12 DILDSVKNVKLCAVRAVGEANALPMRTEGYELYASFPLYTNLMMEQQRRITVMLRELLRN 71
Query: 80 QNISKSMSKLY--LEGQKDILTEANDKLLESINTRIDVMA-GTKTPSVLPSQPKIVKES- 135
+ L+ D + EAND + E +D++ + V+ Q + ES
Sbjct: 72 AGCRIPIPARINDLDEFLDRIVEANDNICERAGILLDLLQKARRMEEVVVPQQILDAEST 131
Query: 136 -------WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEI----ERPQLQFKVKVDNSY 184
+ K + + + + + K K + + AV + E+PQ+ F ++VDNS+
Sbjct: 132 AASEQTLFEKQGRYTALLRRLPGYKDK-----LSSSAAVPLLTSKEKPQVVFGIEVDNSF 186
Query: 185 EQLFEPKLKEKPNALKPLAILLEKYD-----AIESF--------CHPYEYELDLYVPKED 231
+ F+PKL+EK +A++ L L+ D AI + HPY EL +
Sbjct: 187 AE-FKPKLREKHHAMENLVKNLQIVDNDNDIAISTMWRNDQGISLHPYYKELHHFKIPTR 245
Query: 232 FLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQ 291
L + LSDT L+ + E++ L L ++QE ++DLE++ RS+ G TCLMQ
Sbjct: 246 QLTVGMVQSLKALSDTELVYVDTVEKLRNLRDILNKEQEFSVDLEHNAQRSFLGLTCLMQ 305
Query: 292 ISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTH 351
ISTR DYI+D L D+ +LNE TD NI+KVFHGADSDI WLQ+DFG+YVV MFDT+
Sbjct: 306 ISTRQTDYIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTY 365
Query: 352 QACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 411
+A + L + S +L++ C+ DK FQ DWR RPL YAR+DTHYLL+ YD
Sbjct: 366 KAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYDQ 425
Query: 412 MKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALR 471
+++ L NL+ + S C Y+KPVF +GY + LN++Q++AL
Sbjct: 426 LRIKLLDQGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKLLVGRKPLNSRQQFALA 485
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHA 531
L+KWRD AR DES YVLP HMLLQ+A+ +PR++QGI ACC+PVP VK+ + +H
Sbjct: 486 ALWKWRDERARADDESPQYVLPCHMLLQIAEVLPREMQGILACCSPVPVHVKQELHVLHQ 545
Query: 532 IILKARLQSLTK 543
II +R Q L K
Sbjct: 546 IINTSRDQPLLK 557
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q++AL L+KWRD AR DES YVLP HMLLQ+A+ +PR++QGI ACC+PVP V
Sbjct: 477 NSRQQFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLPREMQGILACCSPVPVHV 536
Query: 630 KEHVLDIHAIILKARLQPLTK 650
K+ + +H II +R QPL K
Sbjct: 537 KQELHVLHQIINTSRDQPLLK 557
>gi|393910372|gb|EFO27811.2| 3'-5' exonuclease [Loa loa]
Length = 844
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 202/552 (36%), Positives = 297/552 (53%), Gaps = 37/552 (6%)
Query: 23 DVL--VQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKT 79
D+L V+N V+ A + P E L AS P Y + + ++ ++ LL+
Sbjct: 12 DILDSVKNVKLCAVRAVGEANALPMRTEGYELYASFPLYTNLMMEQQRRITVMLRELLRN 71
Query: 80 QNISKSMSKLY--LEGQKDILTEANDKLLESINTRIDVMA-GTKTPSVLPSQPKIVKES- 135
+ L+ D + EAND + E +D++ + V+ Q + ES
Sbjct: 72 AGCRIPIPARINDLDEFLDRIVEANDNICERAGILLDLLQKARRMEEVVVPQQILDAEST 131
Query: 136 -------WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEI----ERPQLQFKVKVDNSY 184
+ K + + + + + K K + + AV + E+PQ+ F ++VDNS+
Sbjct: 132 AASEQTLFEKQGRYTALLRRLPGYKDK-----LSSSAAVPLLTSKEKPQVVFGIEVDNSF 186
Query: 185 EQLFEPKLKEKPNALKPLAILLEKYD-----AIESF--------CHPYEYELDLYVPKED 231
+ F+PKL+EK +A++ L L+ D AI + HPY EL +
Sbjct: 187 AE-FKPKLREKHHAMENLVKNLQIVDNDNDIAISTMWRNDQGISLHPYYKELHHFKIPTR 245
Query: 232 FLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQ 291
L + LSDT L+ + E++ L L ++QE ++DLE++ RS+ G TCLMQ
Sbjct: 246 QLTVGMVQSLKALSDTELVYVDTVEKLRNLRDILNKEQEFSVDLEHNAQRSFLGLTCLMQ 305
Query: 292 ISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTH 351
ISTR DYI+D L D+ +LNE TD NI+KVFHGADSDI WLQ+DFG+YVV MFDT+
Sbjct: 306 ISTRQTDYIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTY 365
Query: 352 QACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 411
+A + L + S +L++ C+ DK FQ DWR RPL YAR+DTHYLL+ YD
Sbjct: 366 KAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYDQ 425
Query: 412 MKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALR 471
+++ L NL+ + S C Y+KPVF +GY + LN++Q++AL
Sbjct: 426 LRIKLLDQGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKLLVGRKPLNSRQQFALA 485
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHA 531
L+KWRD AR DES YVLP HMLLQ+A+ +PR++QGI ACC+PVP VK+ + +H
Sbjct: 486 ALWKWRDERARADDESPQYVLPCHMLLQIAEVLPREMQGILACCSPVPVHVKQELHVLHQ 545
Query: 532 IILKARLQSLTK 543
II +R Q L K
Sbjct: 546 IINTSRDQPLLK 557
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q++AL L+KWRD AR DES YVLP HMLLQ+A+ +PR++QGI ACC+PVP V
Sbjct: 477 NSRQQFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLPREMQGILACCSPVPVHV 536
Query: 630 KEHVLDIHAIILKARLQPLTK 650
K+ + +H II +R QPL K
Sbjct: 537 KQELHVLHQIINTSRDQPLLK 557
>gi|402589191|gb|EJW83123.1| 3'-5' exonuclease [Wuchereria bancrofti]
Length = 822
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/389 (44%), Positives = 239/389 (61%), Gaps = 18/389 (4%)
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEK----PNALKPLAILLEKYDAIESF---------C 216
E+PQ+ F ++VDNS+ + F+PKLKEK N +K L I+ D +S
Sbjct: 175 EKPQIVFGIEVDNSFVE-FKPKLKEKHHAVENLVKNLQIVDSDNDGNQSTMWHNDQGTNL 233
Query: 217 HPYEYELDLY-VPKEDF-LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAID 274
HPY EL+ + +P + EP + PLSDT L+ + E++ L L ++QE ++D
Sbjct: 234 HPYHSELNHFKIPARQLTIGVVEPLK--PLSDTELVYVDTVEKLRNLRDVLNKEQEFSVD 291
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
LE++ +RS+ G TCLMQISTR DYI+D L D+ +LNE TD NI+KVFHGADSDI
Sbjct: 292 LEHNAHRSFLGLTCLMQISTRQMDYIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIV 351
Query: 335 WLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
WLQ+DFG+YVV MFDT++A + L + S +L++ C+ DK FQ DWR RPL
Sbjct: 352 WLQRDFGIYVVNMFDTYKAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTVAH 411
Query: 395 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN 454
YAR+DTHYLL+ YD ++ L + NL+ + S C Y+KP F +GY
Sbjct: 412 KTYARSDTHYLLHCYDQLRKRLLGQENAANNLLEFVYNESAQTCLNVYKKPTFESDGYEK 471
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
+ LN++Q++AL L+KWRD AR DES YVLP HM+LQ+A+ +PR++QGI AC
Sbjct: 472 LLVGRKPLNSRQQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLPREMQGILAC 531
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTK 543
C+PVP VK+ + +H II +R Q L K
Sbjct: 532 CSPVPVHVKQELHILHQIINTSRDQPLVK 560
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q++AL L+KWRD AR DES YVLP HM+LQ+A+ +PR++QGI ACC+PVP V
Sbjct: 480 NSRQQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLPREMQGILACCSPVPVHV 539
Query: 630 KEHVLDIHAIILKARLQPLTK 650
K+ + +H II +R QPL K
Sbjct: 540 KQELHILHQIINTSRDQPLVK 560
>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
Length = 500
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 189/467 (40%), Positives = 267/467 (57%), Gaps = 53/467 (11%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
K D V++ ++V TK + + PS E L + ++ A D+++ + +++
Sbjct: 34 KDVDTFVKHGLGAVVSATKASAALPSAGDEFDLYRSFSSFQQFCASQGDRLLHCMSQIMQ 93
Query: 79 TQNISKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---P 129
M +KL LE + D++ +AND +LE + +D +G V+P+ P
Sbjct: 94 HHGCRSHMRDRNKLTGLEDRFDLVVDANDAILEKVGILLDEASGVSRSQQPVMPAGYQPP 153
Query: 130 KIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
KI+ SWN+ S A F L A I+RPQL+F+ KVDNS F
Sbjct: 154 KIIVSSWNRKGGGSR------------AQTFQL-LAAKNIQRPQLKFRDKVDNS-NTPFL 199
Query: 190 PKLKEKPNALKPL-AILLEKY----------------DAI----------ESFCHPYEYE 222
K+ KPNA+KPL + +K+ D I + F HPY+YE
Sbjct: 200 SKIFIKPNAVKPLPSYFADKHIRKERPEDLDVPAALADFIHQQRTKEHVDDMFSHPYQYE 259
Query: 223 LDLYVPKEDFLKCE-EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
LD V E+ LKC+ E + P+ +TP I+ E + L +L + E A+DLE+H+YR
Sbjct: 260 LDHLVMPEN-LKCKPEVQMYKPIDETPCQFISTLEDLVALNEKLAKTTEFAVDLEHHSYR 318
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S+ G TCLMQISTR++D+I+DTL+LR ++ +LNE TD IVKVFHGADSDI+WLQKDFG
Sbjct: 319 SFLGITCLMQISTREEDFIIDTLELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFG 378
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LYVV MFDTH A + L + R SL +LLK YCDV SDK +QL DWR RPLP+ ++YA+ D
Sbjct: 379 LYVVNMFDTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQAD 438
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
THYLLYVYD ++ DL +G+ L+ +T SR++ KY KP+F
Sbjct: 439 THYLLYVYDRVRADLFDGGNGQATLIQQVWTKSRDLSLKKYVKPIFT 485
>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
Length = 847
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 306/558 (54%), Gaps = 38/558 (6%)
Query: 19 SKTFDVL--VQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDS 75
S + D+L ++N V+ A + P E L AS P Y + + ++ ++
Sbjct: 8 SNSSDILDSIKNVKLCAVRAVGEANALPMRAEGYELYASFPVYANLMLEQQRRITVMLRE 67
Query: 76 LLKTQNISKSMSKLY--LEGQKDILTEANDKLLESINTRIDVMAGTKT-------PSVLP 126
+L+ + L+ D + EAND + E +D++ + +L
Sbjct: 68 VLQNAGCRIPLPTRISDLDEFLDRIVEANDSICERAGILLDLLQKARRMEEVVVPQQILD 127
Query: 127 SQPKIVKES--WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEI----ERPQLQFKVKV 180
++ + E + + + + + + + K+K ++ + AV + E+PQ+ F ++V
Sbjct: 128 AESTVASEQTLFERQGRYAALLRRLPGYKEKLSSPAITT--AVPLLTSKEKPQIVFGIEV 185
Query: 181 DNSYEQLFEPKLKEKPNAL----KPLAILLEKYDAIESF---------CHPYEYELDLY- 226
DNS+ + F+PKLKEK +A+ K L I+ D +S HPY EL+ +
Sbjct: 186 DNSFAE-FKPKLKEKHHAVENFVKNLQIVDCDNDGNQSTMWHNDQGTNLHPYHSELNHFK 244
Query: 227 VPKEDF-LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+P + EP +AL SDT L+ + E++ L L ++QE ++DLE++ RS+ G
Sbjct: 245 IPGRQLTIGVVEPLKAL--SDTELVYVDTLEKLRSLRDVLNKEQEFSVDLEHNAQRSFLG 302
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR DYI+D L D+ +LNE TD NI+KVFHGADSDI WLQ+DFG+YVV
Sbjct: 303 LTCLMQISTRQMDYIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVV 362
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT++A + L + S +L++ C+ DK FQ DWR RPL YAR+DTHYL
Sbjct: 363 NMFDTYKAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTIAHKTYARSDTHYL 422
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQ 465
L+ YD ++ L + + NL+ + S C Y+KP F +GY + LN++
Sbjct: 423 LHCYDQLRKRLLSQENAANNLLEFVYNESAQTCLTVYKKPKFESDGYEKLLVGRKPLNSR 482
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
Q++AL L+KWRD AR DES YVLP HM+LQ+A+ +PR++QGI ACC+PVP VK+
Sbjct: 483 QQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLPREMQGILACCSPVPVHVKQE 542
Query: 526 VLDIHAIILKARLQSLTK 543
+ +H II +R Q L K
Sbjct: 543 LHILHQIINTSRDQPLVK 560
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q++AL L+KWRD AR DES YVLP HM+LQ+A+ +PR++QGI ACC+PVP V
Sbjct: 480 NSRQQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLPREMQGILACCSPVPVHV 539
Query: 630 KEHVLDIHAIILKARLQPLTK 650
K+ + +H II +R QPL K
Sbjct: 540 KQELHILHQIINTSRDQPLVK 560
>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
Length = 868
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 243/401 (60%), Gaps = 16/401 (3%)
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL-------EKYDAIESFC-----H 217
E+PQ + + DNS F KL K +A++ + ++ + D I + H
Sbjct: 181 EKPQRTYNITSDNS-SAPFASKLTVKHHAVERRSGIVVVDDNESGQRDWISASAETEEEH 239
Query: 218 PYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEY 277
PY E+ + E LK P++ L++TPL ++ E++ L +L +E ++DLE+
Sbjct: 240 PYIAEMLHFKVPEKQLKSVTPQKFKTLTETPLTIVDTKEKLESLRDKLNSVEEFSVDLEH 299
Query: 278 HNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 337
H R+Y G TCL+QISTRD+D+I+D + + + +LNE T+ NI+KVFHG+D+D+ WLQ
Sbjct: 300 HEMRTYLGLTCLIQISTRDEDFIIDPFPMWDRIGILNEPFTNPNILKVFHGSDNDVLWLQ 359
Query: 338 KDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQY 397
+DFG++VV +FDT+ A K L P+ SLAYL + DV DK +QL DWR RPL I Y
Sbjct: 360 RDFGVHVVNLFDTYVAMKKLKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINY 419
Query: 398 ARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR 457
AR DTHYLLY YD ++ L H + + + S ++C Y+KPVFN +GYM +
Sbjct: 420 AREDTHYLLYSYDMLREQLLQQGHKD---LENVYAESNDLCIRVYKKPVFNPKGYMTEIK 476
Query: 458 SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP 517
LNN+Q +AL LY+WRD +AR +DES +VLPNHMLL +A+++PRD+ GI+ CCNP
Sbjct: 477 FRFTLNNRQDFALTSLYRWRDIVARAEDESPQFVLPNHMLLSLAETLPRDVGGIYVCCNP 536
Query: 518 VPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKK 558
+P VK+ DI I+++AR L K ++ D + +
Sbjct: 537 LPYFVKQRTGDILKIMVEARDIKLEKAERSVKEKTDAQEAR 577
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 47/262 (17%)
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK-- 484
V++ F + KLKY P F+ Y+ + +L+ Q + A WR R R+
Sbjct: 366 VVNLFDTYVAMKKLKY--PKFSL-AYLAFRFADVVLDKQYQLA-----DWRARPLRNAMI 417
Query: 485 ---DESTGYVLPNHMLL--QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
E T Y+L ++ +L Q+ Q +D++ ++A N D+ + K
Sbjct: 418 NYAREDTHYLLYSYDMLREQLLQQGHKDLENVYAESN-----------DLCIRVYK---- 462
Query: 540 SLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVL 599
KPV P K ++ NN+Q +AL LY+WRD +AR +DES +VL
Sbjct: 463 ---KPV--FNP------KGYMTEIKFRFTLNNRQDFALTSLYRWRDIVARAEDESPQFVL 511
Query: 600 PNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQPSL 659
PNHMLL +A+++PRD+ GI+ CCNP+P VK+ DI I+++AR L K ++
Sbjct: 512 PNHMLLSLAETLPRDVGGIYVCCNPLPYFVKQRTGDILKIMVEARDIKLEKAERSVKEKT 571
Query: 660 DGMKKKKQQQQVSPPHDSMDCL 681
D Q+ +DSMD +
Sbjct: 572 DA------QEARGVMNDSMDYI 587
>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
Length = 882
Score = 312 bits (800), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 197/580 (33%), Positives = 294/580 (50%), Gaps = 82/580 (14%)
Query: 11 SDEANKELSK-TFDVLVQNAYKSIVKCTKTAQSFPS--THENSLLIASPNYISGVAGTSD 67
S + ELS+ TF+ +++K TK A P+ S+ A + V S
Sbjct: 3 SASSQNELSQATFNEYNTALQGAVLKATKHAVQLPADIAFHRSVDRA---FARDVEACSS 59
Query: 68 KVMTLVDSLLK------TQNISKSMSKLYLEGQKDIL-------TEANDKLLESINTRID 114
+V+ L + LL T S+ K +E ++D+L ++ D+LLE + +D
Sbjct: 60 RVLDLTNRLLSLVSTADTPASSRRKGKARVENEEDVLDNFHALVVDSMDQLLERADICLD 119
Query: 115 VMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQL 174
G P P+ + + + AK + V Q D + A+ + +PQL
Sbjct: 120 EFLGRSKP---PAIAVNLTQPTSHKAKRTTVPQGRLDPALQHAS---------HLAKPQL 167
Query: 175 QFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIE-----SFCHPYEYELDLYVPK 229
+F KVDNS +++P L+ K NA PL L D+ E S HPY YE+
Sbjct: 168 RFTRKVDNSSRTIWQPTLQHKFNAQVPLGHNLRDEDSDEGLPGPSALHPYRYEIKHITYP 227
Query: 230 EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCL 289
+ P ++TP + + + ++++L+ QEIAIDLEYH+YR++ G+ CL
Sbjct: 228 DRMFASAPPMSPRSFAETPFTWVADSTAFSAMLNKLRSAQEIAIDLEYHSYRTFGGFVCL 287
Query: 290 MQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD 349
MQ+STR++D++VDTL +R+++E LNEV TD IVKV HGA+SDI WLQ+DF LY+V +FD
Sbjct: 288 MQLSTREEDWVVDTLAVRDEMEALNEVFTDSQIVKVLHGAESDIVWLQQDFNLYIVNLFD 347
Query: 350 THQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
T+ A K L PR SLA LL+ YCD +DK +QL DWR RPLPE + YAR+DTH+LLY+Y
Sbjct: 348 TYHASKVLDFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLYIY 407
Query: 410 DCMK---LD-------------------------LSAAAHGKQNLVLSTFTNSRNICKLK 441
D ++ LD L + + +LV + S
Sbjct: 408 DNLRNALLDRAQSRTQSRAQSPSASAPASKPGSPLPTSGNPAHSLVRLVLSRSEETALRV 467
Query: 442 YEKPVFNEEG--------YMNIFRSHALLNN----------QQKYALRELYKWRDRIARD 483
YEK ++ EG + AL+ + Q+ R ++ WRDRIAR+
Sbjct: 468 YEKETYDAEGSGPGGWDTLARKWNKGALIASAQEPTSGPLAMQRAVYRCVHAWRDRIARE 527
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 523
+DEST Y+LPNH L +A+ P D+ + + PVP V+
Sbjct: 528 EDESTRYILPNHYLFILAERPPADMAALLSTFQPVPPVVR 567
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 630
Q+ R ++ WRDRIAR++DEST Y+LPNH L +A+ P D+ + + PVP V+
Sbjct: 510 QRAVYRCVHAWRDRIAREEDESTRYILPNHYLFILAERPPADMAALLSTFQPVPPVVR 567
>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 1297
Score = 312 bits (799), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 191/542 (35%), Positives = 298/542 (54%), Gaps = 28/542 (5%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S F + S++ T+T + N +S N G+ S ++++L SLLK
Sbjct: 4 STGFAPFQERVQTSLMDVTRTVGALAVNDLNFHRTSSANVSEGLDEESGRLLSLTSSLLK 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+S L + I + + D LLE + +D G + PSQ K
Sbjct: 64 AATAGTDISAPVLSDEDSIEDNWRGIVDVIDALLEKADACLDEFTGV-IKKLSPSQDK-- 120
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
++ + A ASN+ +++ N+ + + G +I +PQLQF+ +VD + F P
Sbjct: 121 -DAEARGAAASNM--------RRAQNFPTIYDYGPSKIPKPQLQFEHQVDPTDTSPFRPL 171
Query: 192 LKEKPNALKPLA-ILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
LK KP+A++PL L DA +PYE E+ P LP T
Sbjct: 172 LKTKPHAIEPLEQSLTPSIDAPHGSRNPYETEIRAAKYPSSVYTVSPPIDYLPFETTAAT 231
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRED 309
+ + V ++++ELK +EIAIDLE+H+ SY G LMQISTR+KD++VDTLK RE+
Sbjct: 232 FVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREE 291
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L++LNEV D NI+K+FHG+ DI WLQ+D GLYVVGMFDT+ A L P++SL YLL
Sbjct: 292 LQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKKSLKYLLH 351
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + ++DK +Q+ DWR RPLP YAR+DTHYLLY+YD ++ +L + + NLV
Sbjct: 352 KFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYDNLRNELLTNSTPEDNLVDY 411
Query: 430 TFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWRDRIAR 482
S+ +YE+PV++ G+ ++ RS A+L+++Q L+ +++WRDR+AR
Sbjct: 412 VLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPAILSSEQFAVLKAVHEWRDRVAR 471
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 542
++DE V P H+L ++AQ++P+D+ +F +P+ K+ D+ +I A+ + T
Sbjct: 472 EEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTMSPMTPIAKDRAPDLLQVIKTAKAEGAT 531
Query: 543 KP 544
P
Sbjct: 532 GP 533
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q L+ +++WRDR+AR++DE V P H+L ++AQ++P+D+ +F +P+
Sbjct: 452 SSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTMSPMTPIA 511
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K+ D+ +I A+ + T P
Sbjct: 512 KDRAPDLLQVIKTAKAEGATGP 533
>gi|336369802|gb|EGN98143.1| hypothetical protein SERLA73DRAFT_91376 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382569|gb|EGO23719.1| hypothetical protein SERLADRAFT_450051 [Serpula lacrymans var.
lacrymans S7.9]
Length = 879
Score = 312 bits (799), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 191/540 (35%), Positives = 288/540 (53%), Gaps = 72/540 (13%)
Query: 37 TKTAQSFPS------THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLY 90
TK A S PS T + L ++ S V ++ ++ LV++ + N +++ K+
Sbjct: 28 TKYALSLPSDLTFHQTMNSDLAEDLDSFSSRVLSMANDLLALVETT-GSSNSTRAKGKMK 86
Query: 91 LEGQKDIL-------TEANDKLLESINTRIDVMAGT-KTPSVL--PSQPKIVKESWNKNA 140
LE Q D++ ++ D+LLE +T +D G K P++ P+Q + K S NA
Sbjct: 87 LESQDDVVDNFHSLVVDSMDQLLERTDTCLDEFLGRRKAPAIAINPTQLPLQK-SHKPNA 145
Query: 141 KASNV---WQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPN 197
+ WQ A + +PQL FK KVDN+ + + P L+ K N
Sbjct: 146 SRGRLDPTWQH-----------------ASHLPKPQLSFKTKVDNTVDSPWHPTLRHKYN 188
Query: 198 ALKPLAILL----EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMIT 253
A PL + E D+ + HPY+YE+ + P+ L +TPL ++
Sbjct: 189 AQVPLGYIYRDSEEDADSTKLNLHPYQYEIKHTPYPPSMFQIRSPQPPKILEETPLSWVS 248
Query: 254 EPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVL 313
+ ++ +L+Q E+A+DLE+H+YR++ G+ CLMQISTRD+D+IVDTL LRE+L L
Sbjct: 249 TSADFSAMLEKLRQATELAVDLEHHSYRTFSGFLCLMQISTRDEDFIVDTLALREELSEL 308
Query: 314 NEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCD 373
NEV TD IVKVFHGA+SDI WLQ+DF LY+V +FDT A K + P+ LA LL+ YCD
Sbjct: 309 NEVFTDPRIVKVFHGAESDIVWLQQDFNLYIVNLFDTFHASKAIGFPKHGLASLLEMYCD 368
Query: 374 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAA-AHGKQN---- 425
DK +QL DWR RPLP+ + YAR+DTHYLL++YD ++ +DL+ + A QN
Sbjct: 369 FTPDKQYQLADWRMRPLPDEMLAYARSDTHYLLFIYDNLRNALIDLAQSRAQSSQNESSS 428
Query: 426 ---------LVLSTFTNSRNICKLKYEKPVFNEE---------GYMNIFRSHALLNNQQK 467
L+ S YE+ +++ E G + L+ + +
Sbjct: 429 GPAADPAHALIRQVLFRSEETALRVYERELYDAEDGSGPGGWDGLARKWNKGTLMASARG 488
Query: 468 YALRELYK----WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 523
+E+Y+ WRDR++R++DEST YVLPNH L Q+A+ P D+ + A VP ++
Sbjct: 489 SVRQEVYRSVHAWRDRVSREEDESTRYVLPNHYLFQLAEQPPSDMPALLAFFQHVPPVIR 548
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 553 DGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
DG+ +K + + ++ R ++ WRDR++R++DEST YVLPNH L Q+A+ P
Sbjct: 471 DGLARKWNKGTLMASARGSVRQEVYRSVHAWRDRVSREEDESTRYVLPNHYLFQLAEQPP 530
Query: 613 RDIQGIFACCNPVPQTVK 630
D+ + A VP ++
Sbjct: 531 SDMPALLAFFQHVPPVIR 548
>gi|17531757|ref|NP_496283.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|3874231|emb|CAA90108.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
Length = 876
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/385 (43%), Positives = 237/385 (61%), Gaps = 20/385 (5%)
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNAL-KPLAILLE------KYDAIESFC--- 216
V +E+PQ + + DNS + F KL K +A+ K I+L + D I +
Sbjct: 185 VVLEKPQKTYNISSDNS-QAPFSSKLTVKHHAIEKRTGIVLHDDDESGRRDWISAETETE 243
Query: 217 --HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAID 274
HPY E+ + E LK E + L DTPL MI E++ L L +E A+D
Sbjct: 244 EEHPYIAEILHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEFAVD 303
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
LE+H RSY G TCL+QISTRD+D+I+D + + + +LNE + I+KVFHG+DSD+
Sbjct: 304 LEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVGMLNEPFANPRILKVFHGSDSDVL 363
Query: 335 WLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
WLQ+D+G++VV +FDT+ A K L P+ SLAYL + DV DK +QL DWR RPL
Sbjct: 364 WLQRDYGVHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAM 423
Query: 395 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL--VLSTFTNSRNICKLKYEKPVFNEEGY 452
I YAR DTHYLLY YD ++ L KQ+ + + ++ S ++C Y+KPVFN +GY
Sbjct: 424 INYAREDTHYLLYSYDMLREQLL-----KQDTKDLANVYSESSDLCIKVYKKPVFNPKGY 478
Query: 453 MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
+ + LN +Q YAL L+KWRD +AR +DES +VLPNHM+L +++++PRD+ GI+
Sbjct: 479 LTEIKFRFTLNTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIY 538
Query: 513 ACCNPVPQTVKEHVLDIHAIILKAR 537
ACCNP+P VK+ DI II++AR
Sbjct: 539 ACCNPLPYFVKQRTGDILKIIVEAR 563
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q YAL L+KWRD +AR +DES +VLPNHM+L +++++PRD+ GI+ACCNP+P V
Sbjct: 489 NTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFV 548
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMD 679
K+ DI II++AR L K L ++ Q+ +D+MD
Sbjct: 549 KQRTGDILKIIVEARDVKLEK------VGLSAKERNDAQEARGVMNDTMD 592
>gi|403418903|emb|CCM05603.1| predicted protein [Fibroporia radiculosa]
Length = 751
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 184/492 (37%), Positives = 264/492 (53%), Gaps = 68/492 (13%)
Query: 103 DKLLESINTRIDVMAGTKTP---SVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANW 159
D+LLE + +D G P +V P QP K AK SN Q D + A+
Sbjct: 2 DQLLERADICLDEFLGRSKPPAIAVNPIQPVASK------AKKSNAPQGRLDPALQHAS- 54
Query: 160 FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA----IESF 215
+ +PQLQF+ KVDNSY L++P L+ K NA PL + + ++ +
Sbjct: 55 --------NLPKPQLQFRHKVDNSYHTLWKPTLQHKYNAQVPLGYIFREENSEGAPALNV 106
Query: 216 CHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAID 274
HPY YE+ + P F + P +DTP + + T ++ +L+ +EIA+D
Sbjct: 107 LHPYRYEIKHISYPSRMFTQSP-PISPRSFADTPFTWVNDSAAFTNMLDKLRSAREIAVD 165
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
LE+H+YR+Y G+ CLMQISTRD+D++VD L +R+++E LNEVLTD IVKV HGA+SDI
Sbjct: 166 LEHHSYRTYSGFVCLMQISTRDEDWVVDALAVRDEMEALNEVLTDPAIVKVLHGAESDII 225
Query: 335 WLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
WLQ+DF LY+V +FDT+ A K L PR SLA LL+ YCD +DK +QL DWR RPLPE
Sbjct: 226 WLQQDFNLYIVNLFDTYHASKILEFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEM 285
Query: 395 IQYARTDTHYLLYVYDCMKLDLSAAAHGK-----------------------QNLVLSTF 431
+ YAR+DTH+LL++YD ++ L A + LV
Sbjct: 286 LAYARSDTHFLLFIYDNLRNALIDRAQSRPHSRSQSPSAVVTSPSSHPTNQAHALVREVL 345
Query: 432 TNSRNICKLKYEKPVFNEE------GYMNIFR---SHALLNNQ--------QKYALRELY 474
+ S + YEK +++ + G+ + R L+ Q+ R ++
Sbjct: 346 SRSEDTALRVYEKEIYDADSGAGPGGWDTLARKWNKGVLMAGAPEGGPYAVQRTIYRGVH 405
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH---VLD-IH 530
WRDRIAR++DEST YVLPNH L +A+ P D+ + + +PVP ++ +LD I
Sbjct: 406 AWRDRIAREEDESTRYVLPNHYLFVLAERPPADMAALLSLLHPVPPVIRRRSKELLDAIR 465
Query: 531 AIILKARLQSLT 542
A I S+T
Sbjct: 466 AAIASVAPVSMT 477
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 630
Q+ R ++ WRDRIAR++DEST YVLPNH L +A+ P D+ + + +PVP ++
Sbjct: 397 QRTIYRGVHAWRDRIAREEDESTRYVLPNHYLFVLAERPPADMAALLSLLHPVPPVIR 454
>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
A1163]
Length = 764
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 186/542 (34%), Positives = 289/542 (53%), Gaps = 29/542 (5%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E + F Q S+V+ T+T N +S + + SD++++L SL
Sbjct: 2 ESAADFPPFQQRLTSSLVQMTRTVGQLSVEDLNFHRTSSVEFSESLDEQSDRILSLTSSL 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L+ + L + + + + D LLE + +D G + PSQ +
Sbjct: 62 LRAATAGTDLLAPKLHDEDSVEDNWRGVVDVIDALLERADACLDEFTGV-IKKLSPSQQE 120
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+ + KAS + V+D G +I +PQL F+ DN+ F+P
Sbjct: 121 --QSAAKAAKKASTKFPSVYDF------------GPSKIPKPQLLFERPPDNTDVSPFKP 166
Query: 191 KLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
L+ KP+A+ PL L+ D + + +PYE E+ E P + P T
Sbjct: 167 LLRIKPHAIVPLEDSLKLTDPAQGYRNPYETEIQAAKYPESTYTVSPPVEYQPFESTAAT 226
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRED 309
+ E V +++SELK +EIAIDLE+H+ SY G LMQISTRDKD++VDTLK RE+
Sbjct: 227 FVDTLEGVKEMLSELKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREE 286
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L++LNEV D I+KV HG+ DI WLQ+D GLYVVGMFDT+ A L P++SL +LL
Sbjct: 287 LQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLH 346
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + ++DK +Q+ DWR RPLP YAR+DTHYLLY+YD ++ +L + NLV
Sbjct: 347 KFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNELLENSTPDHNLVDY 406
Query: 430 TFTNSRNICKLKYEKPVFN------EEGYMN-IFRSHALLNNQQKYALRELYKWRDRIAR 482
S+N +YE+PV++ + G+ + ++R+ A+L+ +Q + +++WRD +AR
Sbjct: 407 VLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYRNPAVLSKEQFAVFKAVHQWRDEVAR 466
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 542
++DE V P H+L ++AQ +P D +F +PV K+ D+ +I KA+++ T
Sbjct: 467 EEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTPIAKDRAADLLEVIKKAKIEGAT 526
Query: 543 KP 544
P
Sbjct: 527 GP 528
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q + +++WRD +AR++DE V P H+L ++AQ +P D +F +PV
Sbjct: 447 SKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTPIA 506
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K+ D+ +I KA+++ T P
Sbjct: 507 KDRAADLLEVIKKAKIEGATGP 528
>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
Af293]
Length = 764
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 186/542 (34%), Positives = 289/542 (53%), Gaps = 29/542 (5%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E + F Q S+V+ T+T N +S + + D++++L SL
Sbjct: 2 ESAADFPPFQQRLTSSLVQMTRTVGQLSVEDLNFHRTSSVEFSESLDEQRDRILSLTSSL 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L+T + L + + + + D LLE + +D G + PSQ +
Sbjct: 62 LRTATAGTDLLAPKLHDEDSVEDNWRGVVDVIDALLERADACLDEFTGV-IKKLSPSQQE 120
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+ + KAS + V+D G +I +PQL F+ DN+ F+P
Sbjct: 121 --QSAAKAAKKASTKFPSVYDF------------GPSKIPKPQLLFERPPDNTDVSPFKP 166
Query: 191 KLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
L+ KP+A+ PL L+ D + + +PYE E+ E P + P T
Sbjct: 167 LLRIKPHAIVPLEDSLKLTDPAQGYRNPYETEIQAAKYPESTYTVSPPVEYQPFESTAAT 226
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRED 309
+ E V +++SELK +EIAIDLE+H+ SY G LMQISTRDKD++VDTLK RE+
Sbjct: 227 FVDTLEGVKEMLSELKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREE 286
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L++LNEV D I+KV HG+ DI WLQ+D GLYVVGMFDT+ A L P++SL +LL
Sbjct: 287 LQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLH 346
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + ++DK +Q+ DWR RPLP YAR+DTHYLLY+YD ++ +L + NLV
Sbjct: 347 KFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNELLENSTPDHNLVDY 406
Query: 430 TFTNSRNICKLKYEKPVFN------EEGYMN-IFRSHALLNNQQKYALRELYKWRDRIAR 482
S+N +YE+PV++ + G+ + ++R+ A+L+ +Q + +++WRD +AR
Sbjct: 407 VLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYRNPAVLSKEQFAVFKAVHQWRDEVAR 466
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 542
++DE V P H+L ++AQ +P D +F +PV K+ D+ +I KA+++ T
Sbjct: 467 EEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTPIAKDRAADLLEVIKKAKIEGAT 526
Query: 543 KP 544
P
Sbjct: 527 GP 528
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q + +++WRD +AR++DE V P H+L ++AQ +P D +F +PV
Sbjct: 447 SKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTPIA 506
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K+ D+ +I KA+++ T P
Sbjct: 507 KDRAADLLEVIKKAKIEGATGP 528
>gi|115396098|ref|XP_001213688.1| exosome component 3'-5' exonuclease [Aspergillus terreus NIH2624]
gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 761
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/543 (34%), Positives = 290/543 (53%), Gaps = 31/543 (5%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E + F Q S+V+ T+T + N +S + S ++++L S+
Sbjct: 2 ESAADFPPFQQQLTSSLVQVTRTVGQLSAEDLNFHRSSSAEVSESLDEQSGRILSLTSSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK +S LE + + + + D LLE + +D G + PSQ
Sbjct: 62 LKAATAGTDLSTPTLEDEDSLEDNWRGVVDVIDALLEKADACLDEFTGVIR-RLSPSQ-- 118
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
++NA S K S + + G +I +PQLQF+ DN+ F+P
Sbjct: 119 -----QDQNAAKST-------RKAPSKFPTIYDYGPSKIPKPQLQFERLADNTDVSPFKP 166
Query: 191 KLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLY-VPKEDFLKCEEPKQALPLSDTPL 249
LK KP+A+ PL L+ D + +PYE E+ P +++ P LP T
Sbjct: 167 LLKTKPHAMVPLEQSLKVADPAAGYPNPYEAEIRAAKYPDPTYVESP-PVDYLPFESTTA 225
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRE 308
+ E V +++ ELK +EIAIDLE+H+ SY G LMQISTR+KD++VDTLK RE
Sbjct: 226 TFVDTVEGVKEMLGELKAAKEIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWRE 285
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
+L++LNEV TD +I+KV HG+ DI WLQ+D GLY+VGMFDT+ A L P++SL YLL
Sbjct: 286 ELQMLNEVFTDPSILKVLHGSSMDIIWLQRDLGLYIVGMFDTYHAACALNYPKRSLKYLL 345
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ + + ++DK +Q+ DWR RPLP YAR+DTHYLL++YD ++ +L + NL+
Sbjct: 346 QKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLHIYDHLRNELIRNSTSNNNLID 405
Query: 429 STFTNSRNICKLKYEKPVFNE---EG----YMNIFRSHALLNNQQKYALRELYKWRDRIA 481
S+ +YE+PV++ +G Y + RS +++ +Q + +++WRD++A
Sbjct: 406 YVLERSKTEALQRYERPVYDAALGQGPGGWYDYLSRSSVVVSKEQFAVFKAVHQWRDQVA 465
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
R++DE V P H+L ++AQ +P D+ +F +PV KE ++ +I A++
Sbjct: 466 REEDEGVQCVFPKHVLFRVAQVMPLDLGTLFRTLSPVTTIAKERASELLEVIKAAKIAGA 525
Query: 542 TKP 544
T P
Sbjct: 526 TGP 528
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q + +++WRD++AR++DE V P H+L ++AQ +P D+ +F +PV
Sbjct: 447 SKEQFAVFKAVHQWRDQVAREEDEGVQCVFPKHVLFRVAQVMPLDLGTLFRTLSPVTTIA 506
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
KE ++ +I A++ T P
Sbjct: 507 KERASELLEVIKAAKIAGATGP 528
>gi|212528170|ref|XP_002144242.1| exosome component 3'-5' exonuclease [Talaromyces marneffei ATCC
18224]
gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Talaromyces marneffei
ATCC 18224]
Length = 795
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/396 (40%), Positives = 242/396 (61%), Gaps = 13/396 (3%)
Query: 161 MLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES---FCH 217
+ + G +I +PQLQF+ +N F P LK KP+A+ PL L +A + + +
Sbjct: 137 IYDYGPSKIPKPQLQFRTAPNNHDTSPFRPLLKSKPHAIVPLEQSLRLVEAEKKPAFYPN 196
Query: 218 PYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
PYE E+ D P+ ++ P P+ T + + PE V ++V ELK+ EIA+DLE
Sbjct: 197 PYEKEIRDAKFPESAYVAAP-PVDFGPVESTEAVWVDTPEGVAEMVKELKKANEIAVDLE 255
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
+H+ +Y G LMQISTRDKD++VDTL+ REDL+ LNEV D NI+KVFHG+ DI W
Sbjct: 256 HHDMHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQQLNEVFADPNILKVFHGSTMDIVW 315
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+D GLYVVG+FDT+ A L P++SL +LL+ Y ++DK +Q+ DWR RPL E +
Sbjct: 316 LQRDLGLYVVGLFDTYHAAVALGFPKRSLKFLLEKYARYEADKKYQMADWRLRPLTEEML 375
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN- 454
+YAR DTHYLLY+YDC++ +L + K+N + S+ +YE+PV++ G
Sbjct: 376 RYARADTHYLLYIYDCLRNELLEKSTPKRNQIDYVLERSKTEALQRYERPVYDMAGGQGA 435
Query: 455 ------IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+ R+ ALL+ +Q R +++WRDR+AR++DE V P HML ++A ++P D
Sbjct: 436 GGWHDLLSRNPALLSKEQFAVFRAVHEWRDRVAREEDEGLQCVFPRHMLFKVAIAMPVDK 495
Query: 509 QGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+F +PV VK + ++ A+I KA+++ T P
Sbjct: 496 HTLFKTLSPVTLIVKYRINELLALIKKAKIEGATGP 531
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q R +++WRDR+AR++DE V P HML ++A ++P D +F +PV V
Sbjct: 450 SKEQFAVFRAVHEWRDRVAREEDEGLQCVFPRHMLFKVAIAMPVDKHTLFKTLSPVTLIV 509
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K + ++ A+I KA+++ T P
Sbjct: 510 KYRINELLALIKKAKIEGATGP 531
>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
Length = 329
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 207/294 (70%), Gaps = 1/294 (0%)
Query: 213 ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ F HPY+YEL+ + E+FL + P+S+TP I+ +++ +L +L+ +E A
Sbjct: 36 DMFAHPYQYELEHFSVPEEFLGKPHIQMFRPVSETPCHFISTLDELVELSEKLRTCKEFA 95
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRS+ G TCL+QISTR +D+I+D L+LR DL VLNE TD I+KV HGADSD
Sbjct: 96 LDLEHHSYRSFLGLTCLVQISTRTEDFILDALELRGDLYVLNETFTDPAIIKVLHGADSD 155
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
++WLQ+DFGLY+V +FDTHQA + L + R SL +LLK YC+VD++K +QL DWR RPLPE
Sbjct: 156 VEWLQRDFGLYLVNVFDTHQAARQLSLGRHSLDHLLKLYCNVDANKQYQLADWRIRPLPE 215
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
+ YAR DTHYLLY+YD ++ +L + + + SR+IC KY KP+F E Y
Sbjct: 216 EMLNYARDDTHYLLYIYDRVRTELWERGNELPAQLQVVWQRSRDICLKKYLKPIFTENSY 275
Query: 453 MNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+ ++R LN QQ A + L+ WRD++AR +DESTGYVLPNHMLL++++ +P
Sbjct: 276 LELYRKQKKHLNTQQMTAFKLLFAWRDKMARQEDESTGYVLPNHMLLKISEELP 329
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ A + L+ WRD++AR +DESTGYVLPNHMLL++++ +P
Sbjct: 287 NTQQMTAFKLLFAWRDKMARQEDESTGYVLPNHMLLKISEELP 329
>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
Length = 956
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 200/585 (34%), Positives = 302/585 (51%), Gaps = 99/585 (16%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLK 78
K D + + ++ TK + PS+ E L + P + + +++ + + S L
Sbjct: 97 KPLDPYLTELFSVLMSGTKASNEIPSSKEFDFLTSHFPQFRGAMDESANALKLALSSFLG 156
Query: 79 TQNISKSM---SKLYLEGQKDILTEANDKLLESINTRIDVM---AGTKTPSVLPSQPKIV 132
+N S S+ ++ E D+L D+ E+++ +D M + + V PSQ
Sbjct: 157 QKNKSNSVMDDPEVMFESTVDLL----DQYFENVDMALDEMDMESNADSVGVNPSQ---- 208
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
N+ +S D KS + RPQL++ VDN F P L
Sbjct: 209 -----SNSGSS-------DQTLKS------------MSRPQLKWN-DVDNR-NMPFVPNL 242
Query: 193 KEKPNALKPLAILLEKYDAIES------------------FCH----PYEYELDL----- 225
K KPNA LEK I S F H P+ + +
Sbjct: 243 KSKPNAF---VASLEKSMKIGSLDDDDEEMSGGTKKMGVTFEHSTLPPFPFRFGVGNGVG 299
Query: 226 -----------YVPKE---DFLKCEE--PKQAL---PLSDTPLMMITEPEQVTQLVSELK 266
Y+P+ F+K + P++A+ PL ++P I+ E + +L + L+
Sbjct: 300 GETTRQSSPHPYLPELLSLQFMKSQTTPPEKAISYAPLENSPCTWISTVEDLHKLATILE 359
Query: 267 QQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVF 326
Q AIDLE H+YRS+QG+ CLMQISTR +D+++DTL+LR+ + +LN T IVKV
Sbjct: 360 GQDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQHMHILNSSFTHPKIVKVM 419
Query: 327 HGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWR 386
HG+D DI WLQ+DF +Y V +FDT QAC+ L +P SLAYLLKHYC +D+DK +QL DWR
Sbjct: 420 HGSDCDILWLQRDFAIYCVNLFDTGQACRTLALPGCSLAYLLKHYCGIDADKKYQLADWR 479
Query: 387 HRPLPEPAIQYARTDTHYLLYVYDCMKLDL------SAAAHGKQNLVLSTFTNSRNICKL 440
RPLP ++YAR DTHYLLY+YD ++ D+ ++ G + + S+ +C
Sbjct: 480 VRPLPSEMVKYAREDTHYLLYIYDRLRQDIFNTKPNTSTVSGFERME-EVLVRSKELCMR 538
Query: 441 KYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 499
+YEK +F+E Y+++ + S + + +R L+KWRD +AR DES YVLP+HM+L
Sbjct: 539 RYEKELFSETSYLSLIKFSRGCTASISENVIRVLFKWRDTVARKDDESIRYVLPDHMILS 598
Query: 500 MAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+AQ P ++ + +CCNPVP+ V+ I +I KA LQS P
Sbjct: 599 IAQEAPTEVSQLLSCCNPVPKLVRRDAKIIVDLITKA-LQSRDMP 642
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 635
+R L+KWRD +AR DES YVLP+HM+L +AQ P ++ + +CCNPVP+ V+
Sbjct: 568 VIRVLFKWRDTVARKDDESIRYVLPDHMILSIAQEAPTEVSQLLSCCNPVPKLVRRDAKI 627
Query: 636 IHAIILKA 643
I +I KA
Sbjct: 628 IVDLITKA 635
>gi|119491955|ref|XP_001263472.1| exosome component 3'-5' exonuclease [Neosartorya fischeri NRRL 181]
gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
NRRL 181]
Length = 765
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 181/542 (33%), Positives = 288/542 (53%), Gaps = 29/542 (5%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E + F Q S+V+ T+T + + +S + SD++++L ++
Sbjct: 2 ESAADFPPFQQRLTSSLVQMTRTVGQLSAEDLDFHRTSSAEVSESLDEQSDRILSLTSTI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + + + + D LLE + +D G
Sbjct: 62 LKAATAGTDLPAPKLHDEDSVEDNWRGVVDVIDALLERADACLDEFTGV----------- 110
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
I K S ++ +++ + K S F G +I +PQL F+ +N+ F+P
Sbjct: 111 IKKLSPSQQEQSAAKAAKKASTKFPSVYDF----GPSKIPKPQLLFQRPPNNTDVSPFKP 166
Query: 191 KLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
L+ KP+A+ PL L+ D + + +PYE E+ E P + P T
Sbjct: 167 LLRIKPHAIVPLEDSLKSTDPAQGYRNPYETEIRAAKYPESTYTVSHPVEYQPFESTAAT 226
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRED 309
+ E V +++SELK +EIAIDLE+H+ SY G LMQISTRDKD++VDTLK RE+
Sbjct: 227 FVDTLEGVKEMLSELKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREE 286
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L++LNEV D I+KV HG+ DI WLQ+D GLYVVGMFDT+ A L P++SL +LL+
Sbjct: 287 LQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLQ 346
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + ++DK +Q+ DWR RPLP YAR+DTHYLLY+YD ++ +L + NLV
Sbjct: 347 KFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNELLENSTPDHNLVDY 406
Query: 430 TFTNSRNICKLKYEKPVFN------EEGYMN-IFRSHALLNNQQKYALRELYKWRDRIAR 482
S+N +YE+PV++ + G+ + ++R+ A+L+ +Q + +++WRD +AR
Sbjct: 407 VLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYRNPAVLSKEQFAVFKAVHQWRDEVAR 466
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 542
++DE V P H+L ++AQ +P D +F +PV K+ D+ +I KA+++ T
Sbjct: 467 EEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTPIAKDRAADLLEVIQKAKIEGAT 526
Query: 543 KP 544
P
Sbjct: 527 GP 528
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q + +++WRD +AR++DE V P H+L ++AQ +P D +F +PV
Sbjct: 447 SKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTPIA 506
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K+ D+ +I KA+++ T P
Sbjct: 507 KDRAADLLEVIQKAKIEGATGP 528
>gi|326431455|gb|EGD77025.1| hypothetical protein PTSG_07367 [Salpingoeca sp. ATCC 50818]
Length = 848
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 195/578 (33%), Positives = 285/578 (49%), Gaps = 56/578 (9%)
Query: 21 TFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ 80
TF+ L Q ++S+V K + P ++ P + + +++ ++ L K +
Sbjct: 25 TFEDLQQAMFQSLVPAVKASVQVPKGDDHLYFSTIPEFKTKTRDLQQRLLRQIEGLAKLE 84
Query: 81 NIS-KSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPS-----------VLPSQ 128
+ + S+ ++ Q LTE ND +E ++ +D G S V
Sbjct: 85 HGHLEGWSRDDMDEQMSYLTEINDLCMERVSMFLDDKRGANRASAALEHRLGKHAVHTVS 144
Query: 129 PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLF 188
SWNK A V Q A I RPQL F +DN+ F
Sbjct: 145 IGAGAGSWNKTAPGMRVLQ------------------ATNIARPQLLFTDAIDNTSTP-F 185
Query: 189 EPKLKEKPNALKPL---AILL--------------EKYDAIESFCHPYEYELDLYVPKED 231
PKL KP+A++ L AI + ++ + + + HPYE+EL + P D
Sbjct: 186 RPKLTRKPHAMRDLNLQAIRVHGPGTAAAPAGAGDDEEETVVYYEHPYEHELRAFQPVAD 245
Query: 232 FLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQ 291
+ + ++ P + +Q+ ++S LK ++E+A+DLE HN RSYQG+TCLMQ
Sbjct: 246 AANIRQKRSIDECANNPATFVNTVDQLQDVLSALKGEREVAVDLEAHNVRSYQGFTCLMQ 305
Query: 292 ISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTH 351
+STR +D+++DTL LR LEVLNE L V HGADSDI WLQ+D GLY+V +F
Sbjct: 306 VSTRTRDFLIDTLALRGHLEVLNECLC------VLHGADSDILWLQRDHGLYIVCLFVCL 359
Query: 352 QACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 411
A + L P+ SLAYLLKH + DK QL DWR RPLP YA+ DTHYLL +D
Sbjct: 360 FAMRVLGYPKYSLAYLLKHLFHLSLDKRHQLSDWRIRPLPADMCVYAQADTHYLLDAHDA 419
Query: 412 MKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL- 470
+K +L + NL+ S FT S +IC +YE P ++EE M ++ +L + A+
Sbjct: 420 LKAELLERGNENANLLRSVFTRSTDICLQRYEVPKYDEEQAMRLYNRQSLALTPKGLAIF 479
Query: 471 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 530
R L+ WRD +AR +DES YV+ +HML +A++ P +FA C P P V+ + I
Sbjct: 480 RALHAWRDAVARREDESPRYVMEDHMLFSLARNAPTQPSQVFAICQPTPTLVRMNAHTII 539
Query: 531 AIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHD 568
I A+L LT + DG VS D
Sbjct: 540 ETITNAQL-GLTDADRLAAETADGSTVLTTDHVSGGRD 576
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 110/274 (40%), Gaps = 29/274 (10%)
Query: 571 NQQKYAL--------RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 622
N+Q AL R L+ WRD +AR +DES YV+ +HML +A++ P +FA C
Sbjct: 465 NRQSLALTPKGLAIFRALHAWRDAVARREDESPRYVMEDHMLFSLARNAPTQPSQVFAIC 524
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLN 682
P P V+ + I I A+L LT + DG VS D L+
Sbjct: 525 QPTPTLVRMNAHTIIETITNAQL-GLTDADRLAAETADG-STVLTTDHVSGGRDVQSVLS 582
Query: 683 YKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFE 742
+ + P L+ QD ++ GL + G + K S
Sbjct: 583 HDTVKPADDTK-----QRYQLAMPRLQDLDLSSAGLVKRSSTRFGQALAAQKSTKVSSVA 637
Query: 743 TP-YQRFLKSKEYAKAIQEKVD---KENA-EQKKIDALTPQVKTEPEENVKITQEPVVLK 797
F ++ +A +E +D E+A E+KK + + EPE K Q
Sbjct: 638 ADILHSFARTPLFAATPKEILDMHSDEHADEEKKEEGGVSDSQPEPETEEKKQQ------ 691
Query: 798 QIKSEEKEKVEME---KEKRKKILREREEEKEEQ 828
Q S + + + +E E IL E ++ +EEQ
Sbjct: 692 QSGSGDGDAIVVEDSDNEDDIMILSEVKQREEEQ 725
>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 808
Score = 306 bits (783), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 192/538 (35%), Positives = 290/538 (53%), Gaps = 45/538 (8%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
F L ++V KTA + +P S + + +++ L + LLK+
Sbjct: 8 FQSLQDEVQAALVSTIKTAGYISTEDLGFHRSLNPEVGSALDEQNARLLALANDLLKSAG 67
Query: 82 ISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKES 135
+ LE D+ + + D LLE +T +D G + K+V+E
Sbjct: 68 TVSGLRVPILEDADDVDNNWRSVVDVVDSLLEKTDTCLDEYTGI-------IKRKLVEEP 120
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
+ S ++ DN ++ N + +PQL F++K DN + P LK K
Sbjct: 121 ----SATSKSQRKFLDNSLRTQN----------LVKPQLAFEMKPDNEDTSPWLPLLKTK 166
Query: 196 PNALKPL----AILLEKYDAIESFCHPYEYE-LDLYVPKEDFLKCEEPKQALPLSDTPLM 250
P+A PL ++ YD + + HPYE E L L P F K E P LP+ T
Sbjct: 167 PHAKVPLEDSLGMITNDYDQ-KQYRHPYETEILQLQYPSAMFEKAE-PINYLPVESTSAT 224
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRED 309
+ E V +++ ELK +EIA+DLE+H+ RSY G LMQISTR+KD+IVDTLK R+
Sbjct: 225 FVDTYEGVLEMLEELKGAKEIAVDLEHHDTRSYVGLVSLMQISTREKDWIVDTLKPWRQQ 284
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L+VLNEV D I+KVFHGA DI WLQ+D GLYVVG+FDTH AC+ L + SLA+LLK
Sbjct: 285 LQVLNEVFADPCIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGLAGGSLAFLLK 344
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAAAHGKQNL 426
Y D D+DK +QL DWR RPLPE YAR DTH+LLY++D ++ +D S + N
Sbjct: 345 KYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELIDASNTETPETNP 404
Query: 427 VLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQQKYALRELYKWRDR 479
+ + S+ L+YE+ V+N E G+ + I+++ ALL+++Q + ++ WRD+
Sbjct: 405 METVLEKSKETSLLRYERQVYNAESGKGPGGWFSLIYKTPALLSSEQFAVFKAVHAWRDQ 464
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
IAR D+S +V+ N +++ +A+ +P D+ + + P+ +VK ++ II A+
Sbjct: 465 IARKDDDSINFVMSNSVVINLAKFMPMDMIALLSIIRPISYSVKSRTQELLEIIKAAK 522
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q + ++ WRD+IAR D+S +V+ N +++ +A+ +P D+ + + P+ +V
Sbjct: 448 SSEQFAVFKAVHAWRDQIARKDDDSINFVMSNSVVINLAKFMPMDMIALLSIIRPISYSV 507
Query: 630 KEHVLDIHAIILKAR 644
K ++ II A+
Sbjct: 508 KSRTQELLEIIKAAK 522
>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
Length = 733
Score = 305 bits (781), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 242/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVXGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
Length = 733
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 242/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>gi|349581166|dbj|GAA26324.1| K7_Rrp6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 733
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 242/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
gi|14195186|sp|Q12149.1|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
Length = 733
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 242/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>gi|392296333|gb|EIW07435.1| Rrp6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 733
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 242/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD +AR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLVARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>gi|365763245|gb|EHN04775.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 733
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 241/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +L +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLXNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTXSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
dendrobatidis JAM81]
Length = 826
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 264/467 (56%), Gaps = 47/467 (10%)
Query: 96 DILTEANDKLLESINTRIDVMAGTKTP-SVLPSQPKIVKESWNKNAKASNVWQEVHDNKK 154
D++ + D LLE + +D + KTP S+L S + + + N+ +S + + N
Sbjct: 95 DLIVDVIDDLLEKTDVYLDTLK--KTPKSILESASNTISTNPSGNSTSSFALPKAYGN-- 150
Query: 155 KSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY----- 209
RPQL F+ K+DNS+ F P+++ KP+A PL + L K
Sbjct: 151 ---------------HRPQLGFQDKIDNSFAP-FIPRIQYKPHAKIPLDLTLVKAPISSS 194
Query: 210 -------DAIES-----FC--HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEP 255
D+++S +C HPY E++ + K + L TPL I P
Sbjct: 195 NLKFQSEDSVDSHENQLYCVQHPYRSEIETIQYPVVYFKQHPEEIYRSLESTPLTWIDTP 254
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
+++ L S L+ E A+DLE+H++RSYQG+TCLMQISTR +D++VDTL LR L LN
Sbjct: 255 DKLETLCSILEGVTEFAVDLEHHDFRSYQGFTCLMQISTRTEDFLVDTLILRNSLHALNT 314
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 375
+ IVKVFHGA+ DI+WLQ+DFG+YVV +FDT+ A L + SLA+LLK+YCDV
Sbjct: 315 SFANPQIVKVFHGAEMDIQWLQRDFGVYVVDLFDTYHASHALELEGHSLAFLLKYYCDVV 374
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL----SAAAHGKQNLVL--S 429
+DK +QL DWR RPLP+ + YAR DTHYLLY++D M+ +L + H ++ L S
Sbjct: 375 TDKRYQLADWRIRPLPKEMVHYARMDTHYLLYIFDRMRNELLNKSNPETHNLMHVTLERS 434
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIARDKDEST 488
T+ K Y K + G+ ++ + N++ A+ + +++WRDRIAR +DES
Sbjct: 435 GLTSLNTYQKAPYCKDGLSPNGWRSLLNRLKISFNEENLAVFKAIHEWRDRIARKEDESL 494
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
+VLPNHML +++ +P D + ACC+P P V+ + ++ +I +
Sbjct: 495 RFVLPNHMLQTLSRVMPTDGPAVVACCSPTPSLVRLYSKELAHLIFQ 541
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N + + +++WRDRIAR +DES +VLPNHML +++ +P D + ACC+P P V
Sbjct: 469 NEENLAVFKAIHEWRDRIARKEDESLRFVLPNHMLQTLSRVMPTDGPAVVACCSPTPSLV 528
Query: 630 KEHVLDIHAIILK 642
+ + ++ +I +
Sbjct: 529 RLYSKELAHLIFQ 541
>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
Length = 733
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 241/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++ +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFGYSKYRPLTPSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>gi|395329712|gb|EJF62098.1| hypothetical protein DICSQDRAFT_59413 [Dichomitus squalens LYAD-421
SS1]
Length = 861
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 198/551 (35%), Positives = 278/551 (50%), Gaps = 77/551 (13%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLL------KTQNISKS 85
S +K T A S P+ I P + + S +V++L + LL N S+
Sbjct: 22 SALKATHAAVSLPADIPFHRSI-HPEFAKRLDQCSARVLSLTNKLLTLSTTANAANTSRG 80
Query: 86 MSKLYLEGQKDIL-------TEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNK 138
K LE Q D++ +A D+LLE+ + ID G + P
Sbjct: 81 KGKARLETQDDVVDNFHSMVVDAMDQLLENADIGIDQFLGNLKVPAIAVNPT-------- 132
Query: 139 NAKASNVW-QEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPN 197
A A VW Q D + A++ + +PQL FK KV+N+ + P LK K N
Sbjct: 133 PATAQKVWVQGRLDPALQHASY---------LAKPQLSFKRKVNNNRHTAWTPTLKHKYN 183
Query: 198 ALKPLAI-LLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPE 256
A PL L E+ + + HPY YE+ P +TP ++ PE
Sbjct: 184 AQVPLGYNLGEEGEEPSTSLHPYRYEIRHIAYPSRMFTSAPPISPRSFEETPFSWVSTPE 243
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
++ +L+ EIAIDLEYHNYR++ G+ CLMQISTRD+D++VDTL LRE+LE LNEV
Sbjct: 244 DFATMLDKLRPASEIAIDLEYHNYRTFSGFVCLMQISTRDEDFVVDTLALREELEELNEV 303
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
TD NIVKV HGA+SDI WLQ+DF LY+V +FDT+ A K L PR LA LL+ YCD +
Sbjct: 304 FTDPNIVKVLHGAESDIVWLQQDFNLYIVNLFDTYHASKVLDFPRHGLASLLEMYCDFTA 363
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN----------- 425
DK +QL DWR RPLP+ +QYAR+DTH+LL++YD ++ L A +
Sbjct: 364 DKRYQLADWRIRPLPKEMLQYARSDTHFLLFIYDNLRNALLDRAQSRAQSRAQSPSSPTS 423
Query: 426 -------------LVLSTFTNSRNICKLKYEKPVFNEE------GYMNIFR--------- 457
LV + S YEK +++ E G+ + R
Sbjct: 424 TPPPDPSIPPAHVLVREVLSRSEETALRVYEKEIYDAEFGLGPGGWDTMARKWNKTLLIG 483
Query: 458 SHALLN-----NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
S A N N Q+ R ++ WRD+IAR++DEST YVLPNH + +A+ P D+ +
Sbjct: 484 SMAETNTGAAVNVQRAVYRAVHAWRDKIAREEDESTRYVLPNHYIFSLAERTPADMAALL 543
Query: 513 ACCNPVPQTVK 523
+ +PVP ++
Sbjct: 544 SVFHPVPSVIR 554
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 571 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 630
N Q+ R ++ WRD+IAR++DEST YVLPNH + +A+ P D+ + + +PVP ++
Sbjct: 495 NVQRAVYRAVHAWRDKIAREEDESTRYVLPNHYIFSLAERTPADMAALLSVFHPVPSVIR 554
>gi|392566464|gb|EIW59640.1| hypothetical protein TRAVEDRAFT_147720 [Trametes versicolor
FP-101664 SS1]
Length = 850
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/498 (35%), Positives = 261/498 (52%), Gaps = 72/498 (14%)
Query: 84 KSMSKLYLEGQKDI-------LTEANDKLLESINTRIDVMAG-TKTPSVLPSQPKIVKES 135
+ K LE Q D+ + + D+LLE + +D G +K P++ + +
Sbjct: 79 RGKGKARLESQDDVADHFHSFVVDVMDQLLERADIGLDEFLGHSKAPAIAVNAAPTAAQK 138
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
KN NV D + A+ + +PQL FK KVDN+ + P L+ K
Sbjct: 139 PKKN----NVPPGRLDPALQHAS---------HLPKPQLSFKRKVDNTNGVPWHPTLRHK 185
Query: 196 PNALKPLAI-LLEKYDAIE----SFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPL 249
NA PL L E + +E S HPY +E+ + P F P DTP
Sbjct: 186 YNAKVPLGYNLQEDSEGVEEGPSSSLHPYRHEIKHISYPTRMFTPAP-PIVPRSFEDTPF 244
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + ++ +++ +EIA+DLEYH+YR++ G+ CLMQISTR+ D++VDT+ LR++
Sbjct: 245 TWVSTSAEFAVMLEQMRGAREIAVDLEYHSYRTFAGFVCLMQISTREADFVVDTIALRDE 304
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
+E LNEV TD ++VKVFHGA+SDI WLQ+DF LYVV +FDT+ A K L PR LA LL+
Sbjct: 305 MEELNEVFTDPDVVKVFHGAESDIVWLQQDFNLYVVNLFDTYHASKVLDFPRHGLATLLE 364
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL------------- 416
YCD +DK +QL DWR RPLPE +QYAR+DTH+LL++YD ++ L
Sbjct: 365 MYCDFTADKRYQLADWRIRPLPEEMLQYARSDTHFLLFIYDNLRNALLDRAQSRAQSRAQ 424
Query: 417 ----SAAAHGKQN-------LVLSTFTNSRNICKLKYEKPVF------------------ 447
SAA ++ LV + S +YEK ++
Sbjct: 425 SPSSSAATPTPESSYPPAHALVREVLSRSEETALREYEKELYDTDTGAGPGGWDTLARKW 484
Query: 448 NEEGYMNIF--RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N+ M + R A N Q+ R ++ WRDRIAR++DEST YVLPNH L +A+ P
Sbjct: 485 NKASLMAVSSDREGATAVNVQRAVYRTVHGWRDRIAREEDESTRYVLPNHYLFSLAERTP 544
Query: 506 RDIQGIFACCNPVPQTVK 523
D+ + + +PVP ++
Sbjct: 545 ADMAALLSVFHPVPPVIR 562
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 571 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 630
N Q+ R ++ WRDRIAR++DEST YVLPNH L +A+ P D+ + + +PVP ++
Sbjct: 503 NVQRAVYRTVHGWRDRIAREEDESTRYVLPNHYLFSLAERTPADMAALLSVFHPVPPVIR 562
Query: 631 EH---VLDIHAIILKARLQP 647
+LD +K L P
Sbjct: 563 RRAKELLDAIRDTVKGALGP 582
>gi|145252306|ref|XP_001397666.1| exosome component 3'-5' exonuclease [Aspergillus niger CBS 513.88]
gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
gi|350633598|gb|EHA21963.1| hypothetical protein ASPNIDRAFT_49025 [Aspergillus niger ATCC 1015]
Length = 782
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/537 (32%), Positives = 289/537 (53%), Gaps = 26/537 (4%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
F L Q S+++ T+TA + + ++ + S+++++L S+LK
Sbjct: 7 FGSLQQRVQSSLMQVTRTAGQLSAEDLDFHRTSNAEVSDSLDEQSNRLLSLTSSILKAAT 66
Query: 82 ISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKES 135
+S L+ + + + + D LLE + +D G ++K+
Sbjct: 67 AGTDVSAPTLDDEDSLEDNWRGVVDVIDALLEKADACLDEFTG------------VIKKL 114
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
+ K+ + + + G +I +PQL F+ K DN+ F+P LK K
Sbjct: 115 SPSQQDQAAAAAAKASKKQPAKFPTIYDYGPSKIPKPQLLFERKADNTDTAPFKPLLKTK 174
Query: 196 PNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEP 255
P+A+ PL L+ D+ + +PYE E+ P P T +
Sbjct: 175 PHAVVPLKDSLKLSDSAVGYVNPYEKEIRAAKFPTSSYSVSPPVDYQPWESTKATFVDTL 234
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLN 314
E V +++ ELK +EIAIDLE+H+ SYQG LMQISTRDKD++VDTLK RE+L+VLN
Sbjct: 235 EGVKEMLEELKAAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQVLN 294
Query: 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV 374
EV TD NI+KV HG+ DI WLQ+D GLYVVGMFDT+ A L P++SL +LL+ + +
Sbjct: 295 EVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLQKFVNF 354
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
++DK +Q+ DWR RP+PE YAR+DTHYLL++YD ++ +L + NL+ S
Sbjct: 355 EADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYDHIRNELVENSLPDNNLIDYVLEQS 414
Query: 435 RNICKLKYEKPVFNEE------GYMNIFRSHALLNNQQKYAL-RELYKWRDRIARDKDES 487
+ YE+PV++ G+ ++ ++++ N++++A+ + +++WRD +AR++DE
Sbjct: 415 KKEALQVYERPVYDAATGQGPGGWYDLLSRNSVVVNREQFAVFKAVHQWRDEVAREEDEG 474
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
V P H+L ++A ++P D+ +F +PV V+ +D+ +I KA+ + P
Sbjct: 475 VQCVFPKHVLFRVAHTMPLDLGTLFRTLSPVTPIVQNRAVDLLEVIKKAKDEGADGP 531
>gi|401623674|gb|EJS41765.1| rrp6p [Saccharomyces arboricola H-6]
Length = 733
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 161/392 (41%), Positives = 245/392 (62%), Gaps = 27/392 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L+ +A E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKTPIDNSETHPFIPLLKEKPNALKPLSDCLQLIEAEENNPSHYPHPYEYEID 188
Query: 225 L--YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRS 282
Y P +K E P ++ S+ P+ + TE ++ ++++LK EIA+DLE+H+YRS
Sbjct: 189 HQEYNPDILQIKSEIPSKSWDHSE-PIWVDTE-TKLESMLNDLKNVHEIAVDLEHHDYRS 246
Query: 283 YQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGL 342
Y G CLMQ+STR KDY+VDT++LRE+L +LNEV TD +I+KVFHGA DI WLQ+D GL
Sbjct: 247 YYGIVCLMQVSTRKKDYLVDTIELRENLHILNEVFTDPSIIKVFHGAFMDIIWLQRDLGL 306
Query: 343 YVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDT 402
Y+V +FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DT
Sbjct: 307 YIVSLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADT 366
Query: 403 HYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNE 449
H+LL +YD ++ L + N + SRN+ K ++E +P+ +
Sbjct: 367 HFLLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSKVYSPIEK 421
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E + + +++ ++ LY+WRD IAR DES +V+PN +L + P D+
Sbjct: 422 ENPWRVLMYQYNIAPEREVLVKNLYQWRDVIARRDDESPRFVMPNQLLAALVAYTPTDVI 481
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
G+ + N V + V+++ ++ A ++K L+++
Sbjct: 482 GVVSLTNGVTEHVRQNA-NVLANLIKNSLRNM 512
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+++ ++ LY+WRD IAR DES +V+PN +L + P D+ G+ + N V + V++
Sbjct: 437 EREVLVKNLYQWRDVIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQ 496
Query: 632 HVLDIHAIILKARLQ 646
+ ++ A ++K L+
Sbjct: 497 NA-NVLANLIKNSLR 510
>gi|358368335|dbj|GAA84952.1| exosome complex exonuclease Rrp6 [Aspergillus kawachii IFO 4308]
Length = 784
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 175/537 (32%), Positives = 288/537 (53%), Gaps = 26/537 (4%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
F L Q S+++ T+TA + + ++ + S+++++L S+LK
Sbjct: 7 FGSLQQQVQSSLMQVTRTAGQLSAEDLDFHRTSNAEVSDSLDEQSNRLLSLTSSILKAAT 66
Query: 82 ISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKES 135
+S L+ + + + + D LLE + +D G ++K+
Sbjct: 67 AGTDISAPTLDDEDSLEDNWRGVVDVIDALLEKADACLDEFTG------------VIKKL 114
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
+ K+ + + + G +I +PQL F+ K DN+ F+P LK K
Sbjct: 115 SPSQQDQAAAAAAKAAKKQPAKFPTIYDYGPSKIPKPQLLFERKADNTDTAPFKPLLKTK 174
Query: 196 PNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEP 255
P+A+ PL L+ + + +PYE E+ P P T +
Sbjct: 175 PHAVVPLKDSLKLAGSAVGYVNPYETEIRAAKYPASSYSVSPPVDYQPWESTKATFVDTQ 234
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLN 314
E V +++ ELK +EIAIDLE+H+ SYQG LMQISTRDKD++VDTLK RE+L+VLN
Sbjct: 235 EGVKEMLEELKAAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQVLN 294
Query: 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV 374
EV TD NI+KV HG+ DI WLQ+D GLYVVGMFDT+ A L P++SL +LL+ + +
Sbjct: 295 EVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLQKFVNF 354
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
++DK +Q+ DWR RP+PE YAR+DTHYLL++YD ++ +L + NLV S
Sbjct: 355 EADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYDHIRNELVENSLPDNNLVDYVLEQS 414
Query: 435 RNICKLKYEKPVFNEE------GYMNIFRSHALLNNQQKYAL-RELYKWRDRIARDKDES 487
+ YE+PV++ G+ ++ ++++ N++++A+ + +++WRD +AR++DE
Sbjct: 415 KKEALQVYERPVYDAATGQGPGGWYDLLSRNSVVVNREQFAVFKAVHQWRDEVAREEDEG 474
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
V P H+L ++A ++P D+ +F +PV V+ +D+ +I KA+ + P
Sbjct: 475 VQCVFPKHVLFRVAHTMPLDLGTLFRTLSPVTPIVQNRAVDLLEVIKKAKDEGAEGP 531
>gi|406862035|gb|EKD15087.1| putative exosome complex exonuclease Rrp6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 804
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 189/565 (33%), Positives = 294/565 (52%), Gaps = 54/565 (9%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E ++ F L +++ T+T + +P + + S++V+ L +L
Sbjct: 2 EQTQEFKSLQDQVQAALISTTRTTGQISAEDLGFHRTFNPEVGTALDEQSERVLALASAL 61
Query: 77 LKTQNISKSMSKLYLEGQKDILT------EANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK+ + LE D+ T + D LLE +T +D G
Sbjct: 62 LKSATSISDLQAPRLEDADDVETNWRNVVDVVDSLLEKSDTCLDEYTG------------ 109
Query: 131 IVKESWNKNAKASN---------VWQEVHD------NKKKSANWFMLNKGAVEIERPQLQ 175
++K + NA+ S ++ + H KK+ N+ + +PQL
Sbjct: 110 VIKRKDSTNAEPSTQVRQLIAPVLFPKAHRLQIPSRFKKQGQGNAYRNQNLL---KPQLG 166
Query: 176 FKVKVDNSYEQLFEPKLKEKPNALKP----LAILLEKYDAIESFCHPYEYE-LDLYVPKE 230
F VK DN+ + ++P L KP+A+ P L ++ ++ +CHPYE+E L L P+
Sbjct: 167 FNVKPDNNDDSPWKPILSAKPHAITPFEKSLNTFTNEFGQLQ-YCHPYEHEILHLTYPQS 225
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLM 290
+ K + P LP T + E V +++ ELK+ EIAIDLE+H+ RSY G LM
Sbjct: 226 IYQKAD-PIPYLPFETTSATFVDTEEGVREMLEELKEASEIAIDLEHHDQRSYVGLVSLM 284
Query: 291 QISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD 349
QISTR+KD+IVDTLK R++L+VLNEV D I+KVFHGA DI WLQ+D GLYVVG+FD
Sbjct: 285 QISTREKDWIVDTLKPWRQNLQVLNEVFADPKIIKVFHGAFMDIVWLQRDLGLYVVGLFD 344
Query: 350 THQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
TH A + L SLA+LLK + D D+DK +Q+ DWR RPLP YAR DTH+LLY++
Sbjct: 345 THHASRALGYSGASLAFLLKKFIDFDADKQYQMADWRIRPLPAEMFFYARADTHFLLYIF 404
Query: 410 DCMK---LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------YMNIFRSH 459
D ++ +D S + +N + T + L++E+ V+N + + + ++
Sbjct: 405 DMVRNELIDRSNSEVPDENRLEITLQKCKETSLLRFERQVYNTDSGKGPGGWFSQLNKTP 464
Query: 460 ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
+LL+N+Q R ++ WRD+IAR D+S +VLP H +L +A+ +P D+ G+
Sbjct: 465 SLLSNEQFAVFRAVHGWRDKIARIDDDSPTFVLPQHAVLTLAKLMPMDMVGVLGLIKSGS 524
Query: 520 QTVKEHVLDIHAIILKARLQSLTKP 544
+VK ++ +I A+ Q P
Sbjct: 525 HSVKSRAAELLDVIKSAKAQGKNGP 549
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q R ++ WRD+IAR D+S +VLP H +L +A+ +P D+ G+ +V
Sbjct: 468 SNEQFAVFRAVHGWRDKIARIDDDSPTFVLPQHAVLTLAKLMPMDMVGVLGLIKSGSHSV 527
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K ++ +I A+ Q P
Sbjct: 528 KSRAAELLDVIKSAKAQGKNGP 549
>gi|336467546|gb|EGO55710.1| hypothetical protein NEUTE1DRAFT_86290 [Neurospora tetrasperma FGSC
2508]
gi|350287803|gb|EGZ69039.1| hypothetical protein NEUTE2DRAFT_115146 [Neurospora tetrasperma
FGSC 2509]
Length = 825
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 189/546 (34%), Positives = 288/546 (52%), Gaps = 35/546 (6%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S F L ++ ++V T+TA S S +P + +S ++++L + LLK
Sbjct: 4 SLDFKALRESLQAALVATTRTANSIASEDLQFQRTVNPTVGGQLDNSSGRLLSLANGLLK 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+ LE D+ + + D LLE +T +D G P+
Sbjct: 64 STANLTGQKVGALEDADDVDIQWRNIVDVIDSLLEKADTCLDEYTGLIKRKDAPTPADQG 123
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
+ K K+SN + D K AN I +PQ F+ KVDN ++P L
Sbjct: 124 RA--QKRVKSSN---DRLDWSLKRAN----------ILKPQNNFERKVDNFNTGPWKPLL 168
Query: 193 KEKPNALKPLAILLEKY---DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPL 249
KP+A L L + D + HPYE E+ E K EPK+ LP+ T
Sbjct: 169 SSKPHAKVSLEDSLTTFVDDDNNTQYKHPYETEIKTTPYPEHVYKKREPKEYLPIDSTSA 228
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRE 308
+ + E V +++ ELKQ +EIA+DLE+H++RSY G LMQISTR+KD+++DTL+ R
Sbjct: 229 IWVDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRH 288
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
LEVLNEV D NIVKV HGA D+ WLQ+D GLYVVG+FDT+ AC L P +SL YLL
Sbjct: 289 KLEVLNEVFADPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGRSLGYLL 348
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQN 425
+ + ++DK +QL DWR RPLPE YAR+DTHYLLY++D + +L S K +
Sbjct: 349 SKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVERSTPGKPKPD 408
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEE------GYMNI-FRSHALLNNQQKYALRELYKWRD 478
L+ S+++ +YE +N E G+ N+ +S L N +Q + +++WRD
Sbjct: 409 LLEQVLERSKDVALQRYENLSYNVETGQGPRGWYNVLLKSPTLYNGEQFAVYKAVHQWRD 468
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
+AR +DES + + +L +A+ +P D + +++ + + +K H+ D+ +I KA+
Sbjct: 469 NLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDDLFDVIQKAKE 528
Query: 539 QSLTKP 544
+ + P
Sbjct: 529 EGVNGP 534
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 5/158 (3%)
Query: 494 NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLD 553
H LL + I ++ P P + E VL+ + R ++L+ VE Q
Sbjct: 382 THYLLYIFDMIINELVERSTPGKPKPDLL-EQVLERSKDVALQRYENLSYNVETGQ---- 436
Query: 554 GMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 613
G + + P N +Q + +++WRD +AR +DES + + +L +A+ +P
Sbjct: 437 GPRGWYNVLLKSPTLYNGEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPT 496
Query: 614 DIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKP 651
D + +++ + + +K H+ D+ +I KA+ + + P
Sbjct: 497 DKKALWSILDSNAKGLKSHLDDLFDVIQKAKEEGVNGP 534
>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
Length = 860
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 209/328 (63%), Gaps = 5/328 (1%)
Query: 217 HPYEYE-LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPY E L+ VP E L+ EPK+ L +T L M+ E++ L L E ++DL
Sbjct: 236 HPYIAEILNFKVP-ESQLESAEPKKFNALKNTQLTMVDTKEKLEALKDTLNSVTEFSVDL 294
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E+H R+Y G TCL+QISTRD+D+I+D + + + +LNE T+ I+KVFHGAD+D+ W
Sbjct: 295 EHHEMRTYLGLTCLIQISTRDEDFIIDPFPMWDCIGILNEPFTNPKILKVFHGADNDVLW 354
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+DFG+++V +FDT+ A K L P+ SLAYL + DV DK +QL DWR RPL I
Sbjct: 355 LQRDFGIHIVNLFDTYVAMKKLKYPKFSLAYLAFRFADVILDKQYQLADWRARPLRNAMI 414
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 455
YAR DTHYLLY YD ++ L N+V ++ ++C Y+KPVF +GY+
Sbjct: 415 NYAREDTHYLLYSYDMLREQLLKQDKKDLNVV---YSECNDLCVRVYKKPVFKPKGYLTD 471
Query: 456 FRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
+ N++Q +AL LYKWRD +AR +DES +VLPNHMLL +A+ +PRD+ GI+ACC
Sbjct: 472 LKLRFTFNSRQDHALTSLYKWRDVVARQEDESPQFVLPNHMLLALAEQLPRDVGGIYACC 531
Query: 516 NPVPQTVKEHVLDIHAIILKARLQSLTK 543
NP+P VK+ I II++AR L K
Sbjct: 532 NPLPHFVKKLAGQILKIIVEAREVKLEK 559
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 41/231 (17%)
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK-- 484
+++ F + KLKY P F+ Y+ + +L+ Q + A WR R R+
Sbjct: 363 IVNLFDTYVAMKKLKY--PKFSL-AYLAFRFADVILDKQYQLA-----DWRARPLRNAMI 414
Query: 485 ---DESTGYVLPNHMLL--QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
E T Y+L ++ +L Q+ + +D+ +++ CN D+ + K
Sbjct: 415 NYAREDTHYLLYSYDMLREQLLKQDKKDLNVVYSECN-----------DLCVRVYK---- 459
Query: 540 SLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVL 599
KPV K + L +K + N++Q +AL LYKWRD +AR +DES +VL
Sbjct: 460 ---KPVFKPKGYLTDLKLR--------FTFNSRQDHALTSLYKWRDVVARQEDESPQFVL 508
Query: 600 PNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTK 650
PNHMLL +A+ +PRD+ GI+ACCNP+P VK+ I II++AR L K
Sbjct: 509 PNHMLLALAEQLPRDVGGIYACCNPLPHFVKKLAGQILKIIVEAREVKLEK 559
>gi|341889055|gb|EGT44990.1| hypothetical protein CAEBREN_17638 [Caenorhabditis brenneri]
Length = 864
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 163/390 (41%), Positives = 238/390 (61%), Gaps = 18/390 (4%)
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNAL-KPLAILL--------EKYDAIESFC- 216
V +E+PQ + + DNS F KL K +A+ K I L ++ E+
Sbjct: 178 VVLEKPQKTYSIGADNSAAP-FASKLTVKHHAIEKRTGITLIDDDESGKRDWNRAETETE 236
Query: 217 --HPYEYE-LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 273
HPY E L VPK D + EP + L +T L M+ E++ L L +E A+
Sbjct: 237 EEHPYIAEILHFKVPK-DQMTPAEPIKFKKLDETTLTMVDTKEKLEALRDVLNNVKEFAV 295
Query: 274 DLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDI 333
DLE+++ RSY G +CL+QISTRD+D+I+D + +++ +LN+ + I+KV HG+D+D+
Sbjct: 296 DLEHNDMRSYLGLSCLIQISTRDEDFIIDPFPIWDEIGILNDPFANPTILKVLHGSDNDV 355
Query: 334 KWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 393
WLQ+DFG+++V +FDT+ A K L P+ +LAYL+ + DV DK +QL DWR RPL +
Sbjct: 356 LWLQRDFGVHIVNLFDTYVAMKKLKFPKFNLAYLVSRFADVILDKQYQLADWRARPLSKA 415
Query: 394 AIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYM 453
I YAR DTHYLLY YD ++ L +Q+L S ++ ++C Y+KPVFN +GYM
Sbjct: 416 MINYAREDTHYLLYCYDMLREQL--LKQNEQDLA-SMYSECTDVCVRVYKKPVFNPKGYM 472
Query: 454 NIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ LN++Q Y L LY+WRD +AR +DES +VLPN MLL +++S+PRDI I+
Sbjct: 473 TEIKLRFALNSRQDYVLTNLYRWRDTVARAEDESPQFVLPNTMLLNISESLPRDIGSIYG 532
Query: 514 CCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
CCNP+P VK+ V DI I+++AR L K
Sbjct: 533 CCNPLPLFVKKRVGDILKIVVQARDVKLEK 562
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q Y L LY+WRD +AR +DES +VLPN MLL +++S+PRDI I+ CCNP+P V
Sbjct: 482 NSRQDYVLTNLYRWRDTVARAEDESPQFVLPNTMLLNISESLPRDIGSIYGCCNPLPLFV 541
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMD 679
K+ V DI I+++AR L K +E+ +K Q+ +DSMD
Sbjct: 542 KKRVGDILKIVVQARDVKLEK-IERTTK-----EKSDAQEARGVMNDSMD 585
>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
Length = 782
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 189/529 (35%), Positives = 306/529 (57%), Gaps = 47/529 (8%)
Query: 51 LLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESIN 110
LL S +++S + G +K LVD ++I+ S + ++ D LLE+ +
Sbjct: 46 LLNVSQSFLSKIDG--NKASGLVD----VEDINNRWSDI---------VDSIDTLLENAD 90
Query: 111 TRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIE 170
+D G T +PK+ N NA++S KK+ + +++ A I
Sbjct: 91 LSLDKAKGIVT------KPKVAVAPVN-NAQSSQ-------PKKEKLPYRLIH--AFNIP 134
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIE----SFCHPYEYELDLY 226
+PQL+FK V+N + KL EKPNAL PL LL++ A + S HPYE E+
Sbjct: 135 KPQLRFKHPVNNHPTTPWLWKLTEKPNALVPLEKLLDQVRADKALQLSLPHPYEAEIKNS 194
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
+ + + P Q + +T + + E + ++ ELKQ EIA+DLE+H+YRSY G+
Sbjct: 195 SRPKQLYETKNPVQKGAVEETDPIWVDNSESLHSMLEELKQATEIAVDLEHHDYRSYSGF 254
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 346
CLMQISTR++D+IVDTL+LRE+LE LN V TD I+KV HGA D+ WLQ+DFGLY+VG
Sbjct: 255 VCLMQISTRNQDWIVDTLELREELECLNIVFTDPKIIKVLHGATMDVIWLQRDFGLYLVG 314
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+FDT+ A K L LA+LLK YC ++DK +Q+ DWR RPLP+ ++YA++DTH+LL
Sbjct: 315 LFDTYYATKALGFEGHGLAFLLKKYCQFEADKRYQMADWRIRPLPKEMLKYAQSDTHFLL 374
Query: 407 YVYDCMKLD-LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE------EGYMNI---F 456
YV+DC++++ L ++ K++L+ +S ++ +YE+ ++E +G+ ++ +
Sbjct: 375 YVFDCLRVELLEQSSRRKEDLMQYVVKSSDDVALRRYEREAYDEIYGLGTDGWRHVLTKW 434
Query: 457 RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
S ++ + + L++WRD++AR++DES YV+PNH+L+++A S+P D ++
Sbjct: 435 GSSKIIGREALAVFKSLHRWRDQVARNEDESVRYVMPNHLLVKLAASMPSDPSDLYTSAR 494
Query: 517 PVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSP 565
+P V+ + +I +I AR + + Q + D + Q Q V+P
Sbjct: 495 QLPPLVRMYANEIIEVIQNAREDEVKRATTDEQRTEDTV--MQDQLVTP 541
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 635
+ L++WRD++AR++DES YV+PNH+L+++A S+P D ++ +P V+ + +
Sbjct: 447 VFKSLHRWRDQVARNEDESVRYVMPNHLLVKLAASMPSDPSDLYTSARQLPPLVRMYANE 506
Query: 636 IHAIILKAR 644
I +I AR
Sbjct: 507 IIEVIQNAR 515
>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
[Neurospora crassa]
Length = 822
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 189/546 (34%), Positives = 288/546 (52%), Gaps = 35/546 (6%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S F L ++ ++V T+TA S S +P + +S ++++L + LLK
Sbjct: 4 SLDFKSLRESLQAALVATTRTANSIASEDLQFQRTVNPTVGGQLDNSSGRLLSLANGLLK 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+ LE D+ + + D LLE +T +D G P+
Sbjct: 64 STANLTGQKVGALEDADDVDIQWRNIVDVIDSLLEKADTCLDEYTGLIKRKDAPTPADQG 123
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
+ K K+SN + D K AN I +PQ F+ KVDN ++P L
Sbjct: 124 RA--QKRVKSSN---DRLDWSLKRAN----------ILKPQNNFEKKVDNFATGPWKPLL 168
Query: 193 KEKPNALKPLAILLEKY---DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPL 249
KP+A L L + D + HPYE E+ E K EPK+ LP+ T
Sbjct: 169 SSKPHAKVSLEDSLTTFVDDDNNTQYKHPYETEIKTTPYPEHVYKKREPKEYLPIDSTSA 228
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRE 308
+ + E V +++ ELKQ +EIA+DLE+H++RSY G LMQISTR+KD+++DTL+ R
Sbjct: 229 IWVDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRH 288
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
LEVLNEV + NIVKV HGA D+ WLQ+D GLYVVG+FDT+ AC L P +SL YLL
Sbjct: 289 KLEVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGRSLGYLL 348
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQN 425
+ + ++DK +QL DWR RPLPE YAR+DTHYLLY++D + +L S K +
Sbjct: 349 SKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVERSTPGKPKPD 408
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEE------GYMNI-FRSHALLNNQQKYALRELYKWRD 478
L+ S+++ +YE +N E G+ N+ +S L N +Q + +++WRD
Sbjct: 409 LLEQVLERSKDVALQRYENLSYNVETGQGPRGWYNVLLKSPTLYNGEQFAVYKAVHQWRD 468
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
+AR +DES + + +L +A+ +P D + +++ + + +K H+ D+ +I KAR
Sbjct: 469 NLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDDLFDVIQKARE 528
Query: 539 QSLTKP 544
+ + P
Sbjct: 529 EGVNGP 534
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 5/158 (3%)
Query: 494 NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLD 553
H LL + I ++ P P + E VL+ + R ++L+ VE Q
Sbjct: 382 THYLLYIFDMIINELVERSTPGKPKPDLL-EQVLERSKDVALQRYENLSYNVETGQ---- 436
Query: 554 GMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 613
G + + P N +Q + +++WRD +AR +DES + + +L +A+ +P
Sbjct: 437 GPRGWYNVLLKSPTLYNGEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPT 496
Query: 614 DIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKP 651
D + +++ + + +K H+ D+ +I KAR + + P
Sbjct: 497 DKKALWSILDSNAKGLKSHLDDLFDVIQKAREEGVNGP 534
>gi|169767462|ref|XP_001818202.1| exosome component 3'-5' exonuclease [Aspergillus oryzae RIB40]
gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871959|gb|EIT81108.1| exosome 3'-5' exoribonuclease [Aspergillus oryzae 3.042]
Length = 760
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 186/573 (32%), Positives = 302/573 (52%), Gaps = 45/573 (7%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
F Q S+V+ T+T + + +S + S ++++L SLLK
Sbjct: 7 FPPFQQQLTSSLVQMTRTVGQLSAEDLSFHRTSSAELSESIDEQSGRILSLTSSLLKAAT 66
Query: 82 ISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKES 135
+ L+ + I + + D LLE + +D G + PSQ +
Sbjct: 67 AGTDLPVPTLQDEDSIEDNWRGVVDVIDALLERADACLDEFTGV-IKRLSPSQQE----- 120
Query: 136 WNKNAKASNVWQEVHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK 193
AKA+ KK+ + F + + G +I +PQL F+ +VDN+ + F+P L+
Sbjct: 121 -QSAAKAT----------KKTTSKFPTIYDYGPSKIPKPQLYFERQVDNADDSPFKPLLR 169
Query: 194 EKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMIT 253
KP+A+ PL +E D +PYE E+ E P P T +
Sbjct: 170 TKPHAVVPLEKSVESSDR-----NPYETEIRAARYPESTYAVSSPVPYQPWESTTATFVD 224
Query: 254 EPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEV 312
E V +++ ELK +EIAIDLE+H+ SYQG LMQISTRDKD++VDTLK RE+L++
Sbjct: 225 TLEGVKEMLEELKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQM 284
Query: 313 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYC 372
LNEV D +I+KVFHG+ DI WLQ+D GLYVVGMFDT+ A L P++SL +LL+ +
Sbjct: 285 LNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLQKFV 344
Query: 373 DVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFT 432
+ ++DK +Q+ DWR RP+PE YAR+DTHYLL+++D ++ +L + + NL+
Sbjct: 345 NFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIENSTPENNLIDYVLE 404
Query: 433 NSRNICKLKYEKPVFNEEG-------YMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S++ ++E+ ++ Y + R+ A+L+ +Q + +++WRD +AR++D
Sbjct: 405 KSKDEALQRFERSPYDAATGQGPGGWYDYLSRNPAVLSKEQFAVFKAVHQWRDAVAREED 464
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
E V P H+L ++A ++P D+ +F +PV K+ D+ A+I A+++ P
Sbjct: 465 EGVQCVFPKHVLFKVAHAMPLDLGTLFRTLSPVTPIAKDRAADLLAVIKNAKIEGADGPE 524
Query: 546 EK---LQPSLDG----MKKKQQQQVSPPHDSNN 571
+ ++P+ G + +Q V+PP N
Sbjct: 525 WRDVYVKPTRAGRSVPATETEQGLVTPPIGEEN 557
>gi|336273270|ref|XP_003351390.1| hypothetical protein SMAC_03697 [Sordaria macrospora k-hell]
gi|380092911|emb|CCC09664.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 821
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 190/546 (34%), Positives = 288/546 (52%), Gaps = 35/546 (6%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S F L ++ ++V T+TA S S +P S + +S +++ L + LLK
Sbjct: 4 SLDFKTLRESLQAALVATTRTANSIASEDLQFQRTVNPTVGSQLDNSSGRLLNLANGLLK 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+ LE D+ + + D LLE +T +D G +P+
Sbjct: 64 STANLTGQKVGTLEDADDVDIQWRNIVDVIDSLLEKADTCLDEYTGLIKRKDVPTPADQG 123
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
+ K K+SN + + K AN I +PQ F+ KVDN ++P L
Sbjct: 124 RA--QKRVKSSN---DRLEWSLKRAN----------ILKPQNNFERKVDNFAAGPWKPLL 168
Query: 193 KEKPNALKPLAILLEKY---DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPL 249
KP+A L L + D + HPYE E+ E K EPK+ LP+ T
Sbjct: 169 SSKPHAKVSLEDSLTTFVDDDNNTQYKHPYETEIKTTPYPEHVYKKREPKEFLPIDSTSA 228
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRE 308
+ I E V +++ ELKQ +EIA+DLE+H++RSY G LMQISTR+KD+++DTL+ R
Sbjct: 229 VWIDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRH 288
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
LEVLNEV D IVKV HGA D WLQ+D GLY+VG+FDT+ AC L P +SL YLL
Sbjct: 289 KLEVLNEVFADPKIVKVLHGAFMDAIWLQRDLGLYLVGLFDTYHACAVLGYPGRSLGYLL 348
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQN 425
+ + ++DK +QL DWR RPLPE YAR+DTHYLLY+YD + +L S K +
Sbjct: 349 SKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIYDMLVNELIERSTPGKPKPD 408
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEE------GYMNI-FRSHALLNNQQKYALRELYKWRD 478
L+ S+++ +YE P +N E G+ N+ +S L N++Q + +++WRD
Sbjct: 409 LLEQVLERSKDVALQRYENPSYNVETGMGPRGWYNVLLKSPTLYNSEQFAVYKAVHQWRD 468
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
+AR +DES + + +L +A+ +P D + +++ + + +K H+ + +I KAR
Sbjct: 469 NLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDHLFDVIQKARE 528
Query: 539 QSLTKP 544
+ + P
Sbjct: 529 EGVDGP 534
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 47/82 (57%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q + +++WRD +AR +DES + + +L +A+ +P D + +++ + + +
Sbjct: 453 NSEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGL 512
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K H+ + +I KAR + + P
Sbjct: 513 KSHLDHLFDVIQKAREEGVDGP 534
>gi|315054289|ref|XP_003176519.1| exosome component 3'-5' exonuclease [Arthroderma gypseum CBS
118893]
gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
Length = 827
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 181/578 (31%), Positives = 294/578 (50%), Gaps = 74/578 (12%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
++ F + A+ ++V TKT+Q S+ + S++++ L +SLL+
Sbjct: 6 AEGFTAFQEQAHAALVNATKTSQRIVSSDLTFHRSFDSKTSRSLTEQSNRLLGLTNSLLR 65
Query: 79 TQN---------------------ISKSMSKLYLEGQKDI------LTEANDKLLESINT 111
+ I K +K L ++ I + + D+LLE +
Sbjct: 66 IASSNNPDSPFNASSSSTDTTTKSIIKKKAKTVLRDEESIDENWKAVVDVIDELLEKADA 125
Query: 112 RIDVMAGT-----KTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWF--MLNK 164
+D G P P+Q D ++ F M +
Sbjct: 126 CLDEFTGVIKKFGPGPGAGPAQ----------------------DGGRREGAGFPRMYSH 163
Query: 165 GAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPL--AILLEKYDAIESFCHPYEY 221
G+ +I +PQL F VK+DN+ + + F P LK KP+AL L ++ + D + + HPYE
Sbjct: 164 GSSKIAKPQLGFDVKLDNADDGRAFRPLLKSKPHALVGLEESLGGSEQDPTKPYNHPYEK 223
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
E++ V E + EP P+ T + E V +++++LKQ +EIA+DLE+H+
Sbjct: 224 EIEASVYPESVYQKAEPTMYQPVEGTKATFVETLEDVQRMLAQLKQAKEIAVDLEHHDGH 283
Query: 282 SYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
Y G CLMQISTR++D+IVDTLK R+ L++LNEV D +IVKV HG+ D+ WLQ+D
Sbjct: 284 VYHGLVCLMQISTREQDWIVDTLKPWRDQLQILNEVFADPSIVKVLHGSSMDVIWLQRDL 343
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
GLY+VG+FDT A L +P++SL +LL Y D+DK +Q DWR RPL + YAR+
Sbjct: 344 GLYLVGLFDTFHAASVLQLPKKSLKFLLHEYVGFDADKKYQTADWRIRPLLTGMLDYARS 403
Query: 401 DTHYLLYVYD-------CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE--- 450
DTH+LLY++D + DLS+A G + + S+ +YE+P ++
Sbjct: 404 DTHFLLYIFDRLRNELLALDSDLSSAGVGGREAIECVLERSKESALQRYERPTYDAARGR 463
Query: 451 ---GYMNIFRSHALLNNQQKYAL-RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
G+ ++ + + ++++A+ R L++WRD++AR DEST VL L ++AQ +P
Sbjct: 464 GSGGWHDMLSTSPVALTREQFAVFRALHEWRDKVARTDDESTQTVLSKRSLFRIAQEMPE 523
Query: 507 DIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
D + +PV +++ ++ A+I +AR T P
Sbjct: 524 DKFAVLRMASPVSASLRSRTDEVAALIRQARQGGATGP 561
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+Q R L++WRD++AR DEST VL L ++AQ +P D + +PV ++
Sbjct: 480 TREQFAVFRALHEWRDKVARTDDESTQTVLSKRSLFRIAQEMPEDKFAVLRMASPVSASL 539
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
+ ++ A+I +AR T P
Sbjct: 540 RSRTDEVAALIRQARQGGATGP 561
>gi|345564419|gb|EGX47382.1| hypothetical protein AOL_s00083g475 [Arthrobotrys oligospora ATCC
24927]
Length = 806
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 177/546 (32%), Positives = 293/546 (53%), Gaps = 56/546 (10%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLL---- 77
F ++A +VK KT ++ S + + + T+ KV+ L++SL+
Sbjct: 6 FATFQKDASLGLVKLVKTVKTLSSGDIAFNKSLDAEFSTVLDNTNSKVLGLINSLVRNAT 65
Query: 78 -----KTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
K +N S S +E + +++E D LLE + +D GT V
Sbjct: 66 DGSDVKFENFEDSDS---VETRWSVISEVVDFLLEKADMCMDEYTGT------------V 110
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
K + A + ++ K+ + NK ++ + +PQLQFK + +P+L
Sbjct: 111 KRGIMQTTTAQSNYKSARTEKRTAEGRKAFNK-SLHMVKPQLQFKKPLSPLDSGPHKPRL 169
Query: 193 KEKPNALKPL--AILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
++KP+A+KPL +++ D E + HPY E+ Y K EP Q P T +
Sbjct: 170 EKKPHAIKPLQDSLVPTILDGREKYPHPYLEEISQYKFPNRVHKVAEPIQYKPFESTSAI 229
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ P+++ +++ EL + +EIA+DLE+H++RSY G CLMQ+STR++D+I+DTLKLR++L
Sbjct: 230 FVDSPQRLHEMMQELVKAEEIAVDLEHHDFRSYIGLVCLMQVSTREQDWIIDTLKLRDEL 289
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
EVLNEV + IVKVFHGA DI WLQ+D +YVVG+FDT+ A + L SLA+LLK
Sbjct: 290 EVLNEVFANPGIVKVFHGAFMDIIWLQRDLNIYVVGLFDTYDAARSLGFTGHSLAFLLKK 349
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
Y + D+DK++QL DWR RP+P+ + YAR+DTH+LL++YD M+ +L ++ + + T
Sbjct: 350 YINFDADKSYQLADWRVRPIPQEMLDYARSDTHFLLFIYDNMRNELIGKSNAAEEDKIET 409
Query: 431 F-TNSRNICKLKYEKPVFN------EEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIAR 482
NS+ C Y+ ++ G+++I + +A+ ++Q R ++ WRDR+AR
Sbjct: 410 VQNNSKETCLKTYDTEPYDPVNGGGSRGWLSILKHNAVNFTDEQFSVFRAVHAWRDRVAR 469
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC---------------------CNPVPQT 521
++D++ +V+ + LL A+ +P D + NPVP +
Sbjct: 470 EEDDNPHFVMSKNHLLSFARQMPVDAAAALSVSSNPLLRSKLSDLVSTIKEAKANPVPFS 529
Query: 522 VKEHVL 527
+H+L
Sbjct: 530 SVQHLL 535
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC-CNPVPQT 628
++Q R ++ WRDR+AR++D++ +V+ + LL A+ +P D + NP+
Sbjct: 450 TDEQFSVFRAVHAWRDRVAREEDDNPHFVMSKNHLLSFARQMPVDAAAALSVSSNPL--- 506
Query: 629 VKEHVLDIHAIILKARLQPL 648
++ + D+ + I +A+ P+
Sbjct: 507 LRSKLSDLVSTIKEAKANPV 526
>gi|393212538|gb|EJC98038.1| hypothetical protein FOMMEDRAFT_149467 [Fomitiporia mediterranea
MF3/22]
Length = 845
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/556 (33%), Positives = 286/556 (51%), Gaps = 47/556 (8%)
Query: 11 SDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVM 70
S +A K +FD S+++ TK A P+ N N+ + S K +
Sbjct: 7 SSKAGKIWGSSFDSYNSELQSSVLQATKLAVGLPA-DVNFFRTVDNNFAQAIDSCSRKAL 65
Query: 71 TLVDSLLKTQNISKSMSKL------------YLEGQKDILTEANDKLLESINTRIDVMAG 118
L ++LL+ S S ++G ++ + D+L E +T +D G
Sbjct: 66 ALTNNLLELAEAHNSTSSRIKGKKKLGNQEDVVDGFGSLVVDVLDQLFERADTSLDDYMG 125
Query: 119 TKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKV 178
P+ + +P ++ + + + + +L+ A + +PQL+F+
Sbjct: 126 HTKPAAISVKPPPAASTFTSSTRQGRL------------DPSLLH--AAYLPKPQLKFRR 171
Query: 179 KVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIE-----------SFCHPYEYELDLYV 227
++ NS + + P L+ K NA PL + D IE SF HPY YE+
Sbjct: 172 RI-NSAQSSWSPNLRHKYNAQVPLGYVFHDTDVIEGDSCLGEGTSQSF-HPYRYEIKHIT 229
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
+ P + +TP I EQ+ L+ +L+ QEIA+DLE+H+YRS+ G+
Sbjct: 230 YSRQMFEHRHPIRPSSFENTPFTWIDSKEQLDLLLDQLRHVQEIAVDLEHHSYRSFSGFL 289
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CLMQISTR++D+I+DTL LRE+LE LNE+ TD IVKV HGADSD+ WLQ+DF +Y+V +
Sbjct: 290 CLMQISTREEDFIIDTLALREELEELNEIFTDPKIVKVLHGADSDVVWLQQDFNIYIVNL 349
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDT+ A K L P+ L LL+ YCD DK +QL DWR RPLP+ ++YAR+DTH+LLY
Sbjct: 350 FDTYHASKLLDFPKHGLGALLEMYCDFVPDKRYQLADWRIRPLPDEMMKYARSDTHFLLY 409
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNI-FRSHA 460
+YD ++ L A G+ +LV S + S + YE ++ E G+ + +
Sbjct: 410 IYDNLRNALLDRARGQPDLVRSALSRSEDTALRIYEPEFYDLENGTGPGGWNTLSLKWGR 469
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
L+ Q R + WRD +AR +DEST YV+PNH L Q+A+ P D+ + + PVP
Sbjct: 470 ALSGTQHTVFRAAHAWRDALARKEDESTRYVMPNHYLFQLAERPPTDMANLLSIFRPVPP 529
Query: 521 TVKEHVLDIHAIILKA 536
V+ + +I A
Sbjct: 530 LVRTQAASLLEVIRTA 545
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ Q R + WRD +AR +DEST YV+PNH L Q+A+ P D+ + + PVP V
Sbjct: 472 SGTQHTVFRAAHAWRDALARKEDESTRYVMPNHYLFQLAERPPTDMANLLSIFRPVPPLV 531
Query: 630 KEHVLDIHAIILKA 643
+ + +I A
Sbjct: 532 RTQAASLLEVIRTA 545
>gi|402223082|gb|EJU03147.1| hypothetical protein DACRYDRAFT_50127, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 555
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 190/525 (36%), Positives = 276/525 (52%), Gaps = 59/525 (11%)
Query: 32 SIVKCTKTAQSFPST--HENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKS---- 85
SI ++ A S P SL + V S++V+ LV L++ +I ++
Sbjct: 28 SIALASRAASSLPQDVDFHRSL---DRKFAREVDRVSERVLALVGELIRFVDIKEAEAEG 84
Query: 86 --------------MSKLYLEGQKDI------LTEANDKLLESINTRID-VMAGTKTPSV 124
S L L ++D+ + + D LLE + +D +M +K P V
Sbjct: 85 STGIDAGKAKGKGRTSNLRLLNREDVEDNFEDVVDVTDGLLERADIALDQLMGRSKAPMV 144
Query: 125 LPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSY 184
+ P ES K K + + K + +LN I +PQL F +N
Sbjct: 145 VVKAP----ESRVKKPKLRD--PVISSTGKLDPS--ILN---ARIPKPQLSFAHPPNNFP 193
Query: 185 EQLFEPKLKEKPNALKPLAI---------LLEKYDAIESFCHPYEYELDLYVPKEDFLKC 235
+ P L+ KP+AL PL LLE+ ++ PY YE+ P + L
Sbjct: 194 PASWRPHLQSKPHALVPLGWSAQTPEERELLER---VKDTVGPYAYEILRAQPPSNALVT 250
Query: 236 EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR 295
P+ DTP + P+++ Q++ +LK +EIA+DLE+H+YRSY+G CLMQ+STR
Sbjct: 251 SVPQVPKSFEDTPFEWVGTPDRLAQMLEKLKAAKEIAVDLEHHDYRSYRGIVCLMQLSTR 310
Query: 296 DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK 355
+ D++VDTL LRE+LEVLNEV D NIVKVFHGA DI WLQ+DF LY+V +FDT+ A K
Sbjct: 311 EADWVVDTLALREELEVLNEVFADSNIVKVFHGATMDINWLQRDFNLYIVNLFDTYYASK 370
Query: 356 FLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415
L P SLA+LL YC+ +DK FQL DWR RPLP+ + YAR+DTH+LLYVYD ++ D
Sbjct: 371 ALNFPAFSLAFLLDLYCEFKADKRFQLADWRIRPLPQEMMDYARSDTHFLLYVYDQVRND 430
Query: 416 LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE-----GYMNIFRSHALLNNQQKYAL 470
L G +LV F S++ +E ++ G+ N+ R K A+
Sbjct: 431 LLKRVEGGPDLVEKVFDLSKDTALQVWEPERYDPAGNGPGGWQNLTRKWNKHFMGSKLAV 490
Query: 471 -RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
+ +Y WRDR+AR++DE YVL N + +A++ PRD++G C
Sbjct: 491 FKAVYAWRDRVAREEDEGLRYVLTNPQMFALAENCPRDMKGTVKC 535
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 621
+ +Y WRDR+AR++DE YVL N + +A++ PRD++G C
Sbjct: 491 FKAVYAWRDRVAREEDEGLRYVLTNPQMFALAENCPRDMKGTVKC 535
>gi|347827584|emb|CCD43281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 823
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 198/580 (34%), Positives = 301/580 (51%), Gaps = 63/580 (10%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E ++ F L ++V KTA S +P S + + +++ L + L
Sbjct: 3 EDTQDFKSLQDEVQAALVSTVKTAGYIASEDLGFHRSLNPEVGSALDEQNARLLALANQL 62
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK+ + LE D+ + + D LLE +T +D G
Sbjct: 63 LKSAASVSGIQVPILEDVDDVDNNWRGVVDVVDSLLEKTDTCLDEYTG------------ 110
Query: 131 IVKESWNKNAKASNVWQEVH-DNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
I+K + A+ Q+ DN ++ N + +PQL F+VK DN +
Sbjct: 111 IIKRKQVEETSATMKPQKRSLDNSLRTQN----------LVKPQLAFEVKPDNEDTSPWL 160
Query: 190 PKLKEKPNAL----KPLAILLEKYDAIESFCHPYEYE-LDLYVPKEDFLKCEEPKQALPL 244
P LK KP+A L ++ +YD + + HPYE E L L P + K E P + LP+
Sbjct: 161 PLLKTKPHAKVSLEDSLGMITNEYDQ-KQYKHPYETEILQLQYPSAMYEKAE-PIKYLPV 218
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
T + E V +++ ELK EIA+DLE+H+ RSY G LMQ+STR+KD+IVDTL
Sbjct: 219 ESTSATFVDTYEGVLEMLEELKGATEIAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTL 278
Query: 305 K-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
K R+ L+VLNEV D NI+KVFHGA DI WLQ+D GLYVVG+FDTH AC+ L S
Sbjct: 279 KPWRQQLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGFAGGS 338
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA---- 419
LA+LLK Y D D+DK +QL DWR RPLPE YAR DTH+LLY++D ++ +L A
Sbjct: 339 LAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELLDAPDVE 398
Query: 420 -------AHGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQ 465
A ++VL S+ L+YE+ ++N E G+ + I+++ ALL+++
Sbjct: 399 TPDAETPAATSMDIVLQ---KSKETSLLRYERQLYNAESGKGPGGWFSLIYKTPALLSSE 455
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
Q + ++ WRD+IAR D+S +V+ N +++ +A+ +P D+ + + P+ +VK
Sbjct: 456 QFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSIIRPISHSVKSR 515
Query: 526 VLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSP 565
++ +I A+ P S+D ++K +P
Sbjct: 516 TGELLEVIKAAKENGKDGP-----KSIDVLRKSPDSVATP 550
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q + ++ WRD+IAR D+S +V+ N +++ +A+ +P D+ + + P+ +V
Sbjct: 453 SSEQFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSIIRPISHSV 512
Query: 630 KEHVLDIHAIILKAR 644
K ++ +I A+
Sbjct: 513 KSRTGELLEVIKAAK 527
>gi|242767043|ref|XP_002341292.1| exosome component 3'-5' exonuclease [Talaromyces stipitatus ATCC
10500]
gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
ATCC 10500]
Length = 771
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 241/396 (60%), Gaps = 13/396 (3%)
Query: 161 MLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEKYDAIESFC-H 217
+ + G +I +PQL F+ +N F P LK KP+A+ PL ++ L D +F +
Sbjct: 137 IYDYGPSKIPKPQLLFRTAPNNHDTSPFRPLLKSKPHAIVPLEQSLQLVGTDKKPAFYPN 196
Query: 218 PYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
PYE E+ + PK ++ P + P+ T + + PE V ++V ELK+ +EIA+DLE
Sbjct: 197 PYEKEIRESTYPKSTYV-VAPPVEFGPVETTQAVWVDTPEGVAEMVEELKKAKEIAVDLE 255
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
+H+ +Y G LMQISTRDKD++VDTL+ REDL+ LNEV TD NI+KVFHG+ DI W
Sbjct: 256 HHDVHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQRLNEVFTDPNILKVFHGSTMDIVW 315
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+D GLYVV +FDT+ A L P++SL +LL+ Y ++DK +Q+ DWR RPL + +
Sbjct: 316 LQRDLGLYVVSLFDTYHAAVALGFPKRSLKFLLEKYAHYEADKKYQMADWRLRPLTDEML 375
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG---- 451
+YAR DTHYLLY+YDC++ +L + K+N + S+ +YE+PV++ G
Sbjct: 376 KYARADTHYLLYIYDCLRNELLEKSTPKRNQIDYVLERSKTEALQRYERPVYDTLGGQGA 435
Query: 452 ---YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
Y + R+ +Q + +++WRDR+AR++DE V P H+L ++A ++P D
Sbjct: 436 GGWYDLLSRNSGQFTKEQFAVFKAVHEWRDRVAREEDEGLQCVFPRHVLFRVAVAMPVDK 495
Query: 509 QGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+F +PV VK+ V ++ II KA+++ T P
Sbjct: 496 HTLFKTLSPVTLIVKDRVTELLDIIKKAKIEGATGP 531
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q + +++WRDR+AR++DE V P H+L ++A ++P D +F +PV VK+
Sbjct: 452 EQFAVFKAVHEWRDRVAREEDEGLQCVFPRHVLFRVAVAMPVDKHTLFKTLSPVTLIVKD 511
Query: 632 HVLDIHAIILKARLQPLTKP 651
V ++ II KA+++ T P
Sbjct: 512 RVTELLDIIKKAKIEGATGP 531
>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 229/374 (61%), Gaps = 22/374 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 3 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 62
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 63 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 122
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 123 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 182
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 183 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 242
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 243 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 297
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 298 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 357
Query: 512 FACCNPVPQTVKEH 525
+ N V + V+++
Sbjct: 358 VSLTNGVTEHVRQN 371
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 544 PVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 603
P+EK P K Q PP +++ +RELY+WRD IAR DES +V+PN +
Sbjct: 292 PIEKESP----WKILMYQYNIPP-----EREVLVRELYQWRDLIARRDDESPRFVMPNQL 342
Query: 604 LLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
L + P D+ G+ + N V + V+++
Sbjct: 343 LAALVAYTPTDVIGVVSLTNGVTEHVRQN 371
>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
Length = 823
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 198/580 (34%), Positives = 301/580 (51%), Gaps = 63/580 (10%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E ++ F L ++V KTA S +P S + + +++ L + L
Sbjct: 3 EDTQDFKSLQDEVQAALVSTVKTAGYIASEDLGFHRSLNPEVGSALDEQNARLLALANQL 62
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK+ + LE D+ + + D LLE +T +D G
Sbjct: 63 LKSAASVSGIQVPNLEDVDDVDNNWRGVVDVVDSLLEKTDTCLDEYTG------------ 110
Query: 131 IVKESWNKNAKASNVWQEVH-DNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFE 189
I+K + A+ Q+ DN ++ N + +PQL F+VK DN +
Sbjct: 111 IIKRKQVEETSATMKPQKRSLDNSLRTQN----------LVKPQLAFEVKPDNEDTSPWL 160
Query: 190 PKLKEKPNAL----KPLAILLEKYDAIESFCHPYEYE-LDLYVPKEDFLKCEEPKQALPL 244
P LK KP+A L ++ +YD + + HPYE E L L P + K E P + LP+
Sbjct: 161 PLLKTKPHAKVSLEDSLGMITNEYDQ-KQYKHPYETEILQLQYPSAMYEKAE-PIKYLPV 218
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
T + E V +++ ELK EIA+DLE+H+ RSY G LMQ+STR+KD+IVDTL
Sbjct: 219 ESTSATFVDTYEGVLEMLEELKGATEIAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTL 278
Query: 305 K-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
K R+ L+VLNEV D NI+KVFHGA DI WLQ+D GLYVVG+FDTH AC+ L S
Sbjct: 279 KPWRQQLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGFAGGS 338
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA---- 419
LA+LLK Y D D+DK +QL DWR RPLPE YAR DTH+LLY++D ++ +L A
Sbjct: 339 LAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELLDAPDVE 398
Query: 420 -------AHGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQ 465
A ++VL S+ L+YE+ ++N E G+ + I+++ ALL+++
Sbjct: 399 TPDAETPAATSMDIVLQ---KSKETSLLRYERQLYNAESGKGPGGWFSLIYKTPALLSSE 455
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
Q + ++ WRD+IAR D+S +V+ N +++ +A+ +P D+ + + P+ +VK
Sbjct: 456 QFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSIIRPISHSVKSR 515
Query: 526 VLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSP 565
++ +I A+ P S+D ++K +P
Sbjct: 516 TGELLEVIKAAKENGKDGP-----KSIDVLRKSPDSVATP 550
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q + ++ WRD+IAR D+S +V+ N +++ +A+ +P D+ + + P+ +V
Sbjct: 453 SSEQFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSIIRPISHSV 512
Query: 630 KEHVLDIHAIILKAR 644
K ++ +I A+
Sbjct: 513 KSRTGELLEVIKAAK 527
>gi|390603116|gb|EIN12508.1| hypothetical protein PUNSTDRAFT_97267 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 870
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 218/387 (56%), Gaps = 38/387 (9%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL---EKYDAIESFCHPYEYE 222
A + +PQL F VDN+ + ++P LK K NA PL E DA + HPY YE
Sbjct: 169 ASHLRKPQLSFTRTVDNASQDPWKPTLKHKYNAQVPLGYRFQDEEGGDATSAGIHPYHYE 228
Query: 223 LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRS 282
+ +P ++TP + P ++ +L+ IA+DLE+H+YR+
Sbjct: 229 ITHVSYPAHLFSPGQPTPPKSFAETPFTWVATPAAFALMLEKLRLADAIAVDLEHHSYRT 288
Query: 283 YQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGL 342
+ G+ CLMQISTR +D+IVDTL LR++LE LNEV TD IVKVFHGA+SDI+WLQ+DF +
Sbjct: 289 FAGFVCLMQISTRTEDWIVDTLVLRDELEELNEVFTDPRIVKVFHGAESDIQWLQQDFNV 348
Query: 343 YVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDT 402
+VVG+FDT A K L PR LA LL+ YCD +DK +QL DWR RPLP+ + YAR+DT
Sbjct: 349 FVVGLFDTFHASKVLHFPRHGLASLLEMYCDFIADKRYQLADWRIRPLPQEMLDYARSDT 408
Query: 403 HYLLYVYDCMKLDL-------SAAAHGKQNLVLST------------------FTNSRNI 437
HYLLY+YD ++ L + AA+ ++ L T S
Sbjct: 409 HYLLYIYDHLRHALLERGTSPAFAAYTPVDITLETPISHLTPSDGATWLLREVLARSAQT 468
Query: 438 CKLKYEKPVFNEE------GYMNIFR----SHALLNNQQKYALRELYKWRDRIARDKDES 487
+E+ +++ + G+ + R S + Q+ R ++ WRDR+AR++DES
Sbjct: 469 TLRTFERELYDADNGTGPAGWDTLARKWNKSAGAMPPVQRAVYRAVHAWRDRVAREEDES 528
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFAC 514
YVLPNH L Q+A+S P D+ G+ A
Sbjct: 529 ARYVLPNHYLFQIAESPPADMPGLLAA 555
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 621
Q+ R ++ WRDR+AR++DES YVLPNH L Q+A+S P D+ G+ A
Sbjct: 507 QRAVYRAVHAWRDRVAREEDESARYVLPNHYLFQIAESPPADMPGLLAA 555
>gi|401837803|gb|EJT41675.1| RRP6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 734
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 228/376 (60%), Gaps = 24/376 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L +A E+ + HPY YE+D
Sbjct: 129 LEKPQLKFKKSIDNSESHPFIPLLKEKPNALKPLSESLRLAEAEENNPSHYLHPYAYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
D L+ ++ + D+ + I ++ ++ +LK EIA+DLE+H+YRSY
Sbjct: 189 HQEYSSDVLQIKKEIPSKSWDDSEPIWIDTKTKLGLMLEDLKNASEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQ+STR++DY+VDT++LR+ L +LNEV TD IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQVSTRERDYLVDTIELRDALHILNEVFTDPLIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRARPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------KPVFNEE 450
LL +YD ++ L + N + SRN+ K ++E P+ E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKHRPRTPSSEVYSPIEKEN 423
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + + + +++ +++LY WRD IAR DES +V+PN +L + P D+ G
Sbjct: 424 PWRVLMYQYNITSEKEEL-VKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIG 482
Query: 511 IFACCNPVPQTVKEHV 526
+ + N V + V+++
Sbjct: 483 VVSLTNGVTEHVRQNA 498
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 633
+++LY WRD IAR DES +V+PN +L + P D+ G+ + N V + V+++
Sbjct: 442 VKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIGVVSLTNGVTEHVRQNA 498
>gi|121705450|ref|XP_001270988.1| exosome component 3'-5' exonuclease [Aspergillus clavatus NRRL 1]
gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
NRRL 1]
Length = 778
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 236/388 (60%), Gaps = 8/388 (2%)
Query: 165 GAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELD 224
G +I +PQL F+ DN+ F+P L+ KP+A+ L LE + + +PYE+E+
Sbjct: 146 GPSKIPKPQLSFQRLPDNTDVSPFKPLLRTKPHAVVSLEESLEATEPAGVYKNPYEFEIR 205
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
E P + LP T + E V +++SELK +EIAIDLE+H+ SY
Sbjct: 206 AAKYPESTYTVLPPVEYLPFESTTATFVDTLEGVKEMLSELKSAKEIAIDLEHHDMHSYH 265
Query: 285 GYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G LMQISTRDKD++VDTLK REDL++LN+V D I+KV HG+ DI WLQ+D GLY
Sbjct: 266 GLVSLMQISTRDKDWVVDTLKPWREDLQILNDVFADPAILKVLHGSSMDIIWLQRDLGLY 325
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VVGMFDT+ A L P++SL +LL+ + + ++DK +Q+ DWR RPLP YAR+DTH
Sbjct: 326 VVGMFDTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTH 385
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN------EEGYMN-IF 456
YLLY+YD ++ +L + +L+ S+N +YE+PV++ + G+ + ++
Sbjct: 386 YLLYIYDHLRNELLENSTPDHSLIDYVSEQSKNEALQRYERPVYDAGTGQGQGGWYDYLY 445
Query: 457 RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
R+ A+L+ +Q + +++WRD +AR++DE V P H+L ++AQS+P D +F +
Sbjct: 446 RTPAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFKIAQSMPLDQGTLFRTLS 505
Query: 517 PVPQTVKEHVLDIHAIILKARLQSLTKP 544
P+ V++ + +I +A+++ T P
Sbjct: 506 PMTPIVRDRAATLLEVIKQAKIEGATGP 533
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q + +++WRD +AR++DE V P H+L ++AQS+P D +F +P+ V
Sbjct: 452 SKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFKIAQSMPLDQGTLFRTLSPMTPIV 511
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
++ + +I +A+++ T P
Sbjct: 512 RDRAATLLEVIKQAKIEGATGP 533
>gi|365758455|gb|EHN00296.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 734
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 228/376 (60%), Gaps = 24/376 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L +A E+ + HPY YE+D
Sbjct: 129 LEKPQLKFKKSIDNSESHPFIPLLKEKPNALKPLSESLRLAEAEENNPSHYLHPYAYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
D L+ ++ + D+ + I ++ ++ +LK EIA+DLE+H+YRSY
Sbjct: 189 HQEYSSDVLQIKKEIPSKSWDDSEPIWIDTKTKLGLMLEDLKNASEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQ+STR++DY+VDT++LR+ L +LNEV TD IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQVSTRERDYLVDTIELRDALHILNEVFTDPLIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRARPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------KPVFNEE 450
LL +YD ++ L + N + SRN+ K ++E P+ E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKHRPRTPSSEVYSPIEKEN 423
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + + + +++ +++LY WRD IAR DES +V+PN +L + P D+ G
Sbjct: 424 PWRVLMYQYNITSEKEEL-VKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIG 482
Query: 511 IFACCNPVPQTVKEHV 526
+ + N V + V+++
Sbjct: 483 VVSLTNGVTEHVRQNA 498
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 633
+++LY WRD IAR DES +V+PN +L + P D+ G+ + N V + V+++
Sbjct: 442 VKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIGVVSLTNGVTEHVRQNA 498
>gi|340966615|gb|EGS22122.1| exosome complex exonuclease rrp6-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 859
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 191/550 (34%), Positives = 291/550 (52%), Gaps = 42/550 (7%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
SK F+ L + ++V T++ + + A P + + +D ++ L + ++K
Sbjct: 6 SKDFNALREAVQSALVTVTRSVNALANEDIQFQRTAHPTVAAKLDKNTDCLLRLANGVIK 65
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+ LE DI + + D LLE +T +D G ++
Sbjct: 66 SAAKLTGQRTTTLEDVDDIEIQWKGVVDVIDSLLEKADTCLDEYTG------------LI 113
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGA--VEIERPQLQFKVKVDNSYEQLFEP 190
K K+A + ++V K+ +N+ L+ I +PQ F+ KVDN ++P
Sbjct: 114 K---RKDAPTTEAGRDV---KRSKSNYERLDWSLKRANILKPQNAFEKKVDNFPTGPWKP 167
Query: 191 KLKEKPNALKPLAILLEKY---DAIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSD 246
L KP+A PL L + + + + HPYEYE+ +L P E F +C EP + P+
Sbjct: 168 LLTTKPHAQLPLESSLTTFTTEEGLTQYKHPYEYEITNLKYPPEVF-QCREPIKYQPIET 226
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL-K 305
T + + E V +++ ELK+ EIAIDLE+H++RSY G LMQISTR+KD+IVDTL
Sbjct: 227 TTAIWVDTWEGVLEMLEELKKATEIAIDLEHHDFRSYNGLLSLMQISTREKDWIVDTLVP 286
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
R LE+LNEV D IVKV HGA DI WLQ+D GLY+VG+FDT+ A L P +SLA
Sbjct: 287 WRHKLEILNEVFADPKIVKVLHGAFMDIIWLQRDLGLYIVGLFDTYYASDVLGYPGKSLA 346
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAAAHG 422
YLLK + D D+DK +QL DWR RPLPE YAR+DTH+LLY+YD ++ +LSAA H
Sbjct: 347 YLLKRFADFDADKKYQLADWRIRPLPEEMFYYARSDTHFLLYIYDHLRNELAELSAANHP 406
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYK 475
+ S+ +YE + E G+ N +S A N +Q + ++K
Sbjct: 407 DGKPIDRVIKRSKEESLQRYEHLTCDPETGIGARGWFNTLCKSPAAYNREQFAVYKAVHK 466
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
WRD +AR +DES Y + +L +A+ +P D + +++ N +K ++ ++ +I +
Sbjct: 467 WRDDLARREDESPQYFMTQQILADIARILPSDKKALWSLLNHNAGVLKPYLDELFDLIQE 526
Query: 536 ARLQSLTKPV 545
AR + T P
Sbjct: 527 ARNKGCTGPT 536
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPV 625
P N +Q + ++KWRD +AR +DES Y + +L +A+ +P D + +++ N
Sbjct: 450 PAAYNREQFAVYKAVHKWRDDLARREDESPQYFMTQQILADIARILPSDKKALWSLLNHN 509
Query: 626 PQTVKEHVLDIHAIILKARLQPLTKPV 652
+K ++ ++ +I +AR + T P
Sbjct: 510 AGVLKPYLDELFDLIQEARNKGCTGPT 536
>gi|358339908|dbj|GAA47879.1| exosome complex exonuclease RRP6, partial [Clonorchis sinensis]
Length = 1125
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 154/340 (45%), Positives = 217/340 (63%), Gaps = 14/340 (4%)
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLS--DTPLMMITEPEQVTQLVSELKQQQEIAID 274
HPYE ELD + K P +A PL + + ++E+ +EIA+D
Sbjct: 563 HPYEAELDAFAHTISHWKPLNP-EAHPLEPMGANYKFVDTLSALDAALAEISLHKEIAVD 621
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
LE+H++RSY G TCL+Q+STR DYI+D L LR+ L LN + TD ++VKVFHG+D D+
Sbjct: 622 LEHHSHRSYLGITCLVQLSTRTTDYILDALALRDHLHKLNVIFTDPDVVKVFHGSDLDLM 681
Query: 335 WLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
WLQ+DF +YVV +FDT A + L + R SL++LL Y +V ++K +QL DWR RPLP+
Sbjct: 682 WLQRDFSIYVVNLFDTGLAARALQLGRFSLSFLLLRYANVRANKKYQLADWRIRPLPDEL 741
Query: 395 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN 454
I+YARTDTHYLL+V M +L G ++VL R +C +Y KP F+ GY++
Sbjct: 742 IEYARTDTHYLLHVSAVMCQELQ--DRGLLDVVLE---GGRQLCLKRYTKPAFDPLGYLS 796
Query: 455 IFRSHA--LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
++R A N++Q YAL +LY RD IAR +DES YVLPNHML +A+ +PR+ G+F
Sbjct: 797 LYRQAAGTSFNHRQLYALEQLYALRDSIARREDESVHYVLPNHMLKTIAEVLPRESSGLF 856
Query: 513 ACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSL 552
ACCNP+P V+++V D+H II+ AR +P+ +L SL
Sbjct: 857 ACCNPIPPLVRKYVHDLHKIIVDAR----NRPISELPKSL 892
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 43/256 (16%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++Q YAL +LY RD IAR +DES YVLPNHML +A+ +PR+ G+FACCNP+P V
Sbjct: 807 NHRQLYALEQLYALRDSIARREDESVHYVLPNHMLKTIAEVLPRESSGLFACCNPIPPLV 866
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHD------------S 677
+++V D+H II+ AR +P+++ + L+P + ++ P +
Sbjct: 867 RKYVHDLHKIIVDARNRPISELPKSLRPQTAFAYSTNMKMFIAFPKRQGRTPGYFGQLIA 926
Query: 678 MDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLK 737
C+ G PP+ + H + + Q ++ IGL K Y K +
Sbjct: 927 GRCIRLTGPPPL----------HDHRNVFR-QVLRLLSIGLTESSKTFSSEMTYTKDTVV 975
Query: 738 TSRFETPYQRFLKSKEYAKAIQEKVDKE---------NAEQKKIDALTPQVKTEPEENVK 788
S P Q I+ +VD E +EQK A PQV T+P+ +
Sbjct: 976 QSAAPVPRQ-----TPAEPIIKLEVDDEPNETGRPIVPSEQKGFMAGKPQVLTDPDSSTT 1030
Query: 789 I------TQEPVVLKQ 798
+ E V+L+Q
Sbjct: 1031 ADAPNFDSDEVVILRQ 1046
>gi|346973710|gb|EGY17162.1| hypothetical protein VDAG_00844 [Verticillium dahliae VdLs.17]
Length = 804
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 187/537 (34%), Positives = 276/537 (51%), Gaps = 41/537 (7%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S F L K++V K+A + +P+ + T+ +++ L LLK
Sbjct: 3 SPDFKALQDEVQKALVTTVKSANRIAAEDLAFQRTVNPSVADELDETTARLLGLSHKLLK 62
Query: 79 TQ-NISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKI 131
+ + S LE D+ + + D +LE + ID G P+
Sbjct: 63 SAAEVCGQGSVPELEDADDVDMHWRKIVDVLDNVLEKADRSIDEFTGVLKRKDAPT---- 118
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
E N KK N + +PQL+F+ +DN+ ++P
Sbjct: 119 ----------------ETTPNAKKPRTALASNMRNANMAKPQLEFERAIDNTS---WKPV 159
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMM 251
L +KPNA PL L + A HPYE E+ E + EP P+ T
Sbjct: 160 LSKKPNASVPLEESLAQDSAESGSKHPYEAEILAASYPERVYQKAEPILYHPVKSTTAKW 219
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDL 310
+ E V +++ ELK+ +EIA+DLE+H+ R+Y G LMQISTRD+D+IVDTLK R L
Sbjct: 220 VDTYEGVLEMLGELKKAKEIAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRHQL 279
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
EVLNEV TD IVKVFHGA D++WLQ+D GLY+ G+FDT A + L P++SLAYLLK
Sbjct: 280 EVLNEVFTDPKIVKVFHGAHMDMQWLQRDLGLYINGLFDTFFAAEILGYPQRSLAYLLKR 339
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAAAHGKQNLV 427
+ D D+DK +Q+ DWR RPLPE YAR+DTHYLLY++D ++ LD S + + +++
Sbjct: 340 FVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIFDRIRNELLDASDRSKPETDII 399
Query: 428 LSTFTNSRNICKLKYEKPVFNEE------GYMNIFRSHAL-LNNQQKYALRELYKWRDRI 480
S+ + +YE F+ E G+ + + + L+ +Q A R ++KWRD
Sbjct: 400 QQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKNPMPLSGKQFAAYRAIWKWRDDT 459
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
AR DESTGYVLPN + ++A+ +P D + + + + K +V +I A K R
Sbjct: 460 ARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHGNSIIAKRNVGEIWAAFKKGR 516
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q A R ++KWRD AR DESTGYVLPN + ++A+ +P D + + + +
Sbjct: 442 SGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHGNSIIA 501
Query: 630 KEHVLDIHAIILKAR 644
K +V +I A K R
Sbjct: 502 KRNVGEIWAAFKKGR 516
>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 826
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 180/545 (33%), Positives = 284/545 (52%), Gaps = 32/545 (5%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++K F + A ++VK ++A S N + + V S ++++L +S+
Sbjct: 2 EIAKDFASYEEQAKTALVKTVRSATQVSSQDLNFHRSLNEDISESVDEQSARLLSLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + D+ + + D+LLE + +D G + PSQ +
Sbjct: 62 LKVATSGSGLRIPELHNEDDLEDNWRSIVDVIDELLEKADACLDEFTGV-IKKLSPSQEQ 120
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+ A A + V+D G +I +PQL F + +N+ F+P
Sbjct: 121 RSAALSKRPATAQ--FPSVYDF------------GPSKISKPQLLFTSRPNNNDTSPFKP 166
Query: 191 KLKEKPNALKPLAILLEKY---DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
L+ KP+A+ PL+ L + D I + HPYE E+ + P + T
Sbjct: 167 LLRSKPHAIAPLSESLGEAGPNDTITFYKHPYETEIRNSPYPQSTYSISPPVEYKSFDAT 226
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-L 306
+ E V +++ELK+ EIAIDLE+H+ SY G CLMQISTRD+D+IVDTLK
Sbjct: 227 TATFVDTLEGVHSMLAELKEATEIAIDLEHHDVHSYHGLVCLMQISTRDQDWIVDTLKPW 286
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
RE+L+VLNEV TD I+KV HG+ DI WLQ+D GLY+VG+FDT+ L P++SL +
Sbjct: 287 REELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDTYHGSVALNYPKRSLKF 346
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ L + L
Sbjct: 347 LLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVENSTPAHKL 406
Query: 427 VLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWRDR 479
V SR +YE+PV+N E G+ ++ R+ L + +Q R +++WRD+
Sbjct: 407 VDYVLEKSRQEALQRYERPVYNAETGEGGGGWHDVLIRNSTLFSREQFAVFRAVHQWRDK 466
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
+AR +DE Y+L L ++A ++P D +F +PV V+ + ++ +I +A+L
Sbjct: 467 LARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTISPVSPPVRARMSELVQVIKEAKLA 526
Query: 540 SLTKP 544
T P
Sbjct: 527 GATGP 531
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q R +++WRD++AR +DE Y+L L ++A ++P D +F +PV V
Sbjct: 450 SREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTISPVSPPV 509
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
+ + ++ +I +A+L T P
Sbjct: 510 RARMSELVQVIKEAKLAGATGP 531
>gi|348690893|gb|EGZ30707.1| hypothetical protein PHYSODRAFT_553621 [Phytophthora sojae]
Length = 1507
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 173/456 (37%), Positives = 261/456 (57%), Gaps = 29/456 (6%)
Query: 97 ILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKS 156
+L EA L + + A T L ++P + + N KA +E KK
Sbjct: 107 LLDEATKHLARFVRGETEPSADASTLRPLENKPHV----FETNKKARKNEKEGQAEKK-- 160
Query: 157 ANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALK-PLAILLEKYDAIESF 215
+ +GA + +PQ +F K+DNS + F KL+EK +AL A++ + D +
Sbjct: 161 -----MARGAQD--KPQDRFDEKIDNS-DAPFVSKLREKVHALNDGAAVVADDEDDEMAP 212
Query: 216 CHPYEYELDL--YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELK--QQQEI 271
HPY E+ Y P + +EP + + L + + E++ Q++ L + + I
Sbjct: 213 RHPYFPEIKALKYAPWQ-LEASDEPYEMVELEKASYLWVDSEEKLVQMMKSLTAVEARVI 271
Query: 272 AIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 331
A+DLE+H+YRSY G TCLMQIST +D++VDTL LR L+ LN+V D VKV HG+D
Sbjct: 272 AVDLEHHSYRSYMGLTCLMQISTAREDFLVDTLALRGKLQTLNQVFCDPAKVKVLHGSDM 331
Query: 332 DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 391
DI WLQ+D GLY+V +FDT +A + L PR SLAY+LK +C++D+DK +QL DWR RPL
Sbjct: 332 DILWLQRDLGLYIVNLFDTGRAARLLQYPRFSLAYMLKRHCNIDADKQYQLADWRTRPLD 391
Query: 392 EPAIQYARTDTHYLLYVYDCMKLD-LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE 450
+ ++YAR DT YLL++YD +K + L A A +++ + T NS +C YEKP EE
Sbjct: 392 KNMVKYAREDTRYLLFIYDRLKKELLQAGAKSRESFLFQTLQNSSKLCLQVYEKPQPTEE 451
Query: 451 GYMNIF-RSHALLNNQ-----QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
+ + + +N Q QK + LY WRDR+AR +DES YV+ NH+L+++ + +
Sbjct: 452 DALALGEKLKGTVNTQELSELQKRVIVALYLWRDRVARQEDESVAYVMANHVLMKLTKHL 511
Query: 505 PRDIQGIFACCNPVPQTVKEHVLDIHAIIL--KARL 538
P +F C+PVP +++H L I +I+ KA+L
Sbjct: 512 PVRSDELFRACHPVPLLIRKHALQITKMIVAEKAKL 547
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
QK + LY WRDR+AR +DES YV+ NH+L+++ + +P +F C+PVP +++H
Sbjct: 473 QKRVIVALYLWRDRVARQEDESVAYVMANHVLMKLTKHLPVRSDELFRACHPVPLLIRKH 532
Query: 633 VLDIHAIIL--KARL 645
L I +I+ KA+L
Sbjct: 533 ALQITKMIVAEKAKL 547
>gi|440640360|gb|ELR10279.1| hypothetical protein GMDG_04665 [Geomyces destructans 20631-21]
Length = 782
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 231/400 (57%), Gaps = 16/400 (4%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY-DAI--ESFCHPYEYELDLYV 227
+PQL F K N ++P L KP+A+ PL L DA E + HPYE E++
Sbjct: 140 KPQLSFLNKPANHETGPWKPLLHSKPHAIVPLEESLGPVADAHQQEHYRHPYETEIEKLK 199
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
K +P LP+ T + E V ++++EL+ +EIAIDLE+H+ RSY G
Sbjct: 200 YPASVYKNADPIPYLPVESTSATFVDTYEGVLEMLAELRTAKEIAIDLEHHDARSYTGLV 259
Query: 288 CLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 346
LMQISTR+KD+IVDTLK R+DL+VLNEV TD I+KV HGA DI WLQ+D GLY+VG
Sbjct: 260 SLMQISTREKDWIVDTLKPWRQDLQVLNEVFTDPKILKVLHGAFMDILWLQRDLGLYIVG 319
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+FDT+ ACK L SLA+LLK + D D+DK +Q+ DWR RPLPE YAR DTH+LL
Sbjct: 320 LFDTNHACKALGYAGGSLAFLLKKFIDFDADKKYQMADWRIRPLPEGMFFYARADTHFLL 379
Query: 407 YVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------YMNIF 456
Y+YD M+ +L S ++N + S+ +Y+ P +N + +
Sbjct: 380 YIYDNMRNELVERSKPVPAEENRLEIVLRKSKETSLFRYDSPRYNATTGKGPGGWFQALV 439
Query: 457 RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
+ +LLNN+Q R ++ WRD+IAR D+ST +V+ NH LL +A+ +P D+ + +
Sbjct: 440 KVPSLLNNEQFAVFRAVHAWRDKIARQDDDSTNFVMANHTLLSVAKVMPTDMASLLGTVH 499
Query: 517 PVPQTVKEHVLDIHAIILKARLQSLTKP--VEKLQPSLDG 554
P+ VK ++ +I A+ + P E L+P G
Sbjct: 500 PISYNVKARTGELLELIKAAKTNAKDGPSMAEVLKPDSVG 539
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 560 QQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIF 619
Q V P NN+Q R ++ WRD+IAR D+ST +V+ NH LL +A+ +P D+ +
Sbjct: 436 QALVKVPSLLNNEQFAVFRAVHAWRDKIARQDDDSTNFVMANHTLLSVAKVMPTDMASLL 495
Query: 620 ACCNPVPQTVKEHVLDIHAIILKARLQPLTKP--VEKLQPSLDG 661
+P+ VK ++ +I A+ P E L+P G
Sbjct: 496 GTVHPISYNVKARTGELLELIKAAKTNAKDGPSMAEVLKPDSVG 539
>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
Length = 745
Score = 293 bits (749), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 159/391 (40%), Positives = 238/391 (60%), Gaps = 25/391 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILL--EKYDAIESFCHPYEYELD 224
IE+PQL FK VDN+ F+P LKEKP+ALKPL +++L E+ + + HPYEYE+D
Sbjct: 129 IEKPQLLFKTPVDNTELHPFKPLLKEKPHALKPLEESLMLAPEEENVPAHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E P T + + E ++Q++ ELK+ +E+A+DLE+H+YRSY
Sbjct: 189 KQPYNDSVLEVRERIDPQPWEATEPIWVDNVESLSQMLDELKEVKELAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQIS+R KD++VDT+ LR+DL VLN + TD +VKVFHGA D+ WLQ+D GLYV
Sbjct: 249 GIVCLMQISSRSKDWLVDTIALRDDLHVLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT+ A + L P+ SLAYLL+ + + K +QL DWR RPLP+P YAR+DTH+
Sbjct: 309 VSLFDTYHASRALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------KPVFNEE 450
LL +YD ++ L A GK VL+ SRN+ K ++E P+ + E
Sbjct: 369 LLSIYDDLRNALVKA--GKLAEVLNA---SRNVAKRRFEYTSFRPRIPDSNVYSPIESTE 423
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + L +++ L++LY+WRD +AR DES YV+PN +L+ + P + G
Sbjct: 424 PWRKLMYQYNLPPSKEPL-LKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAG 482
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
+ + V V+ + + A ++K L+++
Sbjct: 483 VLSVSTYVTDYVRSNARTL-ANLIKRTLETI 512
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
L++LY+WRD +AR DES YV+PN +L+ + P + G+ + V V+ + +
Sbjct: 442 LKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSVSTYVTDYVRSNARTL 501
Query: 637 HAII 640
+I
Sbjct: 502 ANLI 505
>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
Length = 807
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 283/547 (51%), Gaps = 35/547 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++ F + A ++VK ++A S N L N + + S +++ L +S+
Sbjct: 2 EIAADFASYEEEAKTALVKTIRSATQISSEDLNFLRSFDKNVSASIDEESARLLNLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + + + + D+LLE + +D G
Sbjct: 62 LKVATSGSDLQIPELHNEDGVEENWRAIVDVIDELLEKADACLDEFTG------------ 109
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQL-F 188
I+K A+ V + K SAN+ + + G +I +PQL F + +N + F
Sbjct: 110 IIKRLSPSQAERGVVLGK----KTASANFPSVYDFGPSKIPKPQLLFNSRPNNKDDGTPF 165
Query: 189 EPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
P L+ KP+A+ PL+ + I S+ HPYE E+ P + P
Sbjct: 166 RPLLRSKPHAITPLSTSASETSPTGTITSYKHPYETEIRNSTYPSSVYTISVPGKLAPFE 225
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
T + E + +++ELK+ EIAIDLE+H+ SY G CLMQISTRDKD+IVDTLK
Sbjct: 226 TTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLK 285
Query: 306 -LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
RE+L+VLNEV +D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++SL
Sbjct: 286 PWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKKSL 345
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
+LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ DL +
Sbjct: 346 KFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIEHSTPSN 405
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWR 477
NL+ S+ +YE+PV+N E G+ ++ R+ L + +Q R +++WR
Sbjct: 406 NLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNSTLFSREQFAVFRAVHQWR 465
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D+IAR +DE YVL L ++A ++P D + +PV V+ ++ +I +A+
Sbjct: 466 DKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKQAK 525
Query: 538 LQSLTKP 544
+ T P
Sbjct: 526 IIGATGP 532
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R +++WRD+IAR +DE YVL L ++A ++P D + +PV V+
Sbjct: 453 EQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRA 512
Query: 632 HVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPP 674
++ +I +A++ T P +L+ L +K++ + S P
Sbjct: 513 RASELVQVIKQAKIIGATGP--ELRDVLFPLKQRTDESNPSTP 553
>gi|444314737|ref|XP_004178026.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
gi|387511065|emb|CCH58507.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
Length = 771
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/385 (40%), Positives = 227/385 (58%), Gaps = 22/385 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEKYDAI--ESFCHPYEYELD 224
IE+PQL F VDN+ + F+P L EKPNALKPL +++L I + PYEYE+D
Sbjct: 154 IEKPQLLFSKPVDNTDSRPFKPLLVEKPNALKPLKDSLVLVPESGIVPTHYLQPYEYEID 213
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
E+ ++ +P P T + I E + L+ +L++Q EIA+DLE+H+ RSY
Sbjct: 214 NQEYNEEVVEIRDPTPYKPWETTSAIWIDTKESLADLLMDLRKQSEIAVDLEHHDLRSYY 273
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G TCLMQISTR++DYIVDT+ LR+DL VLNE+ T+ NI KVFHGA DI WLQ+D GLY+
Sbjct: 274 GITCLMQISTREQDYIVDTISLRDDLIVLNEIFTNPNITKVFHGASMDIIWLQRDLGLYI 333
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT A K L + R SLAYLL++Y + K +QL DWR RPL + YAR+DTH+
Sbjct: 334 VSLFDTFHASKALGLARHSLAYLLENYASFKTSKKYQLADWRRRPLTNNMLAYARSDTHF 393
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVFNEEGYMNIFRSHA 460
LL ++D ++ L KQN + SRN+ K ++E +P + A
Sbjct: 394 LLNIFDQLRNTLI-----KQNKLAGVLHESRNVAKRRFEYLKFRPTVPLPNLYTLIEKEA 448
Query: 461 ---------LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++++ +++L++WRD IAR DES Y++P +L+ + P D G+
Sbjct: 449 PWKSLLIQYNIQDEKEILVQKLWEWRDMIARRDDESPRYIMPTQVLISLISYTPTDSSGV 508
Query: 512 FACCNPVPQTVKEHVLDIHAIILKA 536
+ N V + V+ + + +I KA
Sbjct: 509 ISVSNMVTEHVRSNSTTLANLIKKA 533
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 571 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 630
++++ +++L++WRD IAR DES Y++P +L+ + P D G+ + N V + V+
Sbjct: 461 DEKEILVQKLWEWRDMIARRDDESPRYIMPTQVLISLISYTPTDSSGVISVSNMVTEHVR 520
Query: 631 EHVLDIHAIILKA 643
+ + +I KA
Sbjct: 521 SNSTTLANLIKKA 533
>gi|449548764|gb|EMD39730.1| hypothetical protein CERSUDRAFT_112032 [Ceriporiopsis subvermispora
B]
Length = 850
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 190/577 (32%), Positives = 286/577 (49%), Gaps = 81/577 (14%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK----TQNISKSMS 87
+ + T+ A +FP+ + P + S +V+ L + L+ Q K
Sbjct: 22 AALTATRHAAAFPADLAFHRSMDRP-LARALDAASARVLALTNRLVGLAHTAQASGKGKG 80
Query: 88 KLYLEGQKDIL-------TEANDKLLESINTRIDVMAG-TKTPSVL--PSQPKIVKESWN 137
K +E + D++ +A D+LLE + +D + G TK P++ P+Q K
Sbjct: 81 KEKIESEDDVVDRFHSLVVDAMDQLLERADICLDEVTGRTKAPAIAVNPAQTAAQK---- 136
Query: 138 KNAKASNVWQEVHDNKKKSANWFMLNKG---AVEIERPQLQFKVKVDNSYEQLFEPKLKE 194
+K +A L+ A + +PQLQF K DN+ ++ P L+
Sbjct: 137 --------------TRKPNAPPGRLDPALQHAAHLAKPQLQFARKPDNNSNTIWTPTLRH 182
Query: 195 KPNALKPLAILL---EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMM 251
K NA PL + +D + HPY YE+ + P +DT
Sbjct: 183 KYNAQVPLGYNYRSDDGHDEGSASLHPYRYEITHTDYPARMFRTASPVAPRGFADTQFTW 242
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + ++++ L+ QEIA+DLE+H++RS+ G+ CLMQISTR++D+IVD L++RE++E
Sbjct: 243 VADRAAFDEMLAHLRTAQEIALDLEHHSFRSFGGFVCLMQISTRERDFIVDVLQVREEME 302
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHY 371
LNEVLTD IVKV HGA+SDI WLQ+DF LYVV +FDT+ A K L PR +L LL+ Y
Sbjct: 303 ELNEVLTDPRIVKVLHGAESDIVWLQQDFNLYVVNLFDTYHASKVLEFPRHNLGTLLEMY 362
Query: 372 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-----------SAAA 420
CD DK +QL DWR RPLPE +QYAR+DTH+LLY+YD ++ L SA+A
Sbjct: 363 CDFTPDKRYQLADWRIRPLPEEMLQYARSDTHFLLYIYDNLRNALLDRAQSRAQSPSASA 422
Query: 421 HG-----------KQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIFR------ 457
LV S YEK ++ + G+ + R
Sbjct: 423 STPPSPAGADTDPAHALVREVLARSATTALRVYEKERYDPDQGLGPGGWDTLARKWNKGA 482
Query: 458 --------SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + + Q+ R ++ WRDR++R +DEST YVLPNH L +A+ P D+
Sbjct: 483 LVAPPVHGADSAVARTQRAVYRAVHAWRDRVSRAEDESTRYVLPNHALFALAERTPADMA 542
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
+ A PVP V+ ++ + A ++L PVE
Sbjct: 543 ALLALFRPVPPVVRRRAQELLDTVRAAVKEALGGPVE 579
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 563 VSPP-HDSNNQ----QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 617
V+PP H +++ Q+ R ++ WRDR++R +DEST YVLPNH L +A+ P D+
Sbjct: 484 VAPPVHGADSAVARTQRAVYRAVHAWRDRVSRAEDESTRYVLPNHALFALAERTPADMAA 543
Query: 618 IFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVE 653
+ A PVP V+ ++ + A + L PVE
Sbjct: 544 LLALFRPVPPVVRRRAQELLDTVRAAVKEALGGPVE 579
>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
Length = 807
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 283/547 (51%), Gaps = 35/547 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++ F + A ++VK ++A S N L N + + S +++ L +S+
Sbjct: 2 EIAADFASYEEEAKTALVKTIRSATQISSEDLNFLRSFDKNVSASIDEESARLLNLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + + + + D+LLE + +D G
Sbjct: 62 LKVATSGSDLQIPELHNEDGVEENWRAIVDVIDELLEKADACLDEFTG------------ 109
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQL-F 188
I+K A+ V + K SAN+ + + G +I +PQL F + +N + F
Sbjct: 110 IIKRLSPSQAERGVVLGK----KTASANFPSVYDFGPSKIPKPQLLFNSRPNNKDDGTPF 165
Query: 189 EPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
P L+ KP+A+ PL+ + I S+ HPYE E+ P + P
Sbjct: 166 RPLLRSKPHAITPLSTSASETSPTGTITSYKHPYETEIRNSTYPSSVYTISVPGKLAPFE 225
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
T + E + +++ELK+ EIAIDLE+H+ SY G CLMQISTRDKD+IVDTLK
Sbjct: 226 TTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLK 285
Query: 306 -LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
RE+L+VLNEV +D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++SL
Sbjct: 286 PWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKKSL 345
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
+LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ DL +
Sbjct: 346 KFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIEHSTPSN 405
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWR 477
NL+ S+ +YE+PV+N E G+ ++ R+ L + +Q R +++WR
Sbjct: 406 NLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNSTLFSREQFAVFRAVHQWR 465
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D+IAR +DE YVL L ++A ++P D + +PV V+ ++ +I +A+
Sbjct: 466 DKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKQAK 525
Query: 538 LQSLTKP 544
+ T P
Sbjct: 526 IIGATGP 532
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R +++WRD+IAR +DE YVL L ++A ++P D + +PV V+
Sbjct: 453 EQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRA 512
Query: 632 HVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPP 674
++ +I +A++ T P +L+ L +K++ + S P
Sbjct: 513 RASELVQVIKQAKIIGATGP--ELRDVLFPLKQRTDESNPSTP 553
>gi|63054485|ref|NP_593004.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|6226742|sp|Q10146.2|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|159883898|emb|CAA93168.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe]
Length = 777
Score = 291 bits (746), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 242/385 (62%), Gaps = 14/385 (3%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY----DAIESFCHPYEY 221
A + +PQL+F+V+ +NS E ++ KL EKP++L PL ++ + S HPYE
Sbjct: 131 AAHLTKPQLRFRVQPNNSREFVWSWKLTEKPHSLVPLEKIIAQVKLDPSLKNSLPHPYEP 190
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
E+ V + P + +T + ++ Q++ ++ EL+ +EIA+DLE+H+YR
Sbjct: 191 EIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEIAVDLEHHDYR 250
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S++G+ CLMQIS R+KD+IVDTL+LRE+LE LN V T+ NI+KVFHGA DI WLQ+DFG
Sbjct: 251 SFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGATMDIIWLQRDFG 310
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LYVV +FDT+ A K L LA+LL+ YCD D+DK +Q+ DWR RPLP ++YA++D
Sbjct: 311 LYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSD 370
Query: 402 THYLLYVYDCMKLDL-SAAAHGKQNLVLSTFTNSRNICKLKYE----KPVF--NEEGYMN 454
THYLLY++D ++ +L S +A K+NL+ S F +S+ I KYE P++ +G+ N
Sbjct: 371 THYLLYIWDHLRNELISKSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRN 430
Query: 455 I---FRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ F S ++ + R L+ WRD +AR +DES YVLPN +L+ +A S P + +
Sbjct: 431 VLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADV 490
Query: 512 FACCNPVPQTVKEHVLDIHAIILKA 536
F+ + + +V DI ++ +A
Sbjct: 491 FSISKQLTPIARMYVEDIVKVVQEA 515
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
R L+ WRD +AR +DES YVLPN +L+ +A S P + +F+ + + +V DI
Sbjct: 450 RALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIV 509
Query: 638 AIILKA 643
++ +A
Sbjct: 510 KVVQEA 515
>gi|452837795|gb|EME39736.1| hypothetical protein DOTSEDRAFT_138360 [Dothistroma septosporum
NZE10]
Length = 784
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 182/543 (33%), Positives = 279/543 (51%), Gaps = 51/543 (9%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDK----VMTLVDSLL 77
F+ L N S++ +TA S N L + S V T D+ ++ L + L+
Sbjct: 4 FNTLEANIKSSLLATIRTANSL----GNEDLAFHRSLDSTVGSTLDRQNARLLGLAERLV 59
Query: 78 KTQNISKSMSKL-------YLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
+ + + +EG + + D LLE +T +D G +V P
Sbjct: 60 GVSTANTELVRPPRLKDLDSVEGNWKAVVDVVDSLLERADTALDEFTG----AVKRMSPG 115
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+ + + K K S + + E+E+PQL+F+ N F+P
Sbjct: 116 VEQAATLKPHKVSRIAAALKTQ---------------ELEKPQLKFEHVPRNDEVLPFKP 160
Query: 191 KLKEKPNALKPL--AILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTP 248
L+ KP+A PL + + D S+ HPY+ E++ Y EP P T
Sbjct: 161 LLQSKPHAAVPLETSPVASDVDTQPSYPHPYQLEVEQYRYPSSVYTISEPIMYQPFESTT 220
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LR 307
+ + + +++ ELK +EIAIDLE+H+ R+Y G LMQISTRDKD++VDTL+ R
Sbjct: 221 ATFVDTEDALYEMLEELKLAKEIAIDLEHHDSRTYIGIVSLMQISTRDKDWVVDTLQPWR 280
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
++ LNEV D +IVKV HGA DI WLQ+D GLY+VG+FDTH A + L SLA+L
Sbjct: 281 RKMQCLNEVFVDPSIVKVLHGAYMDIVWLQRDLGLYIVGLFDTHYAARALGYTGGSLAFL 340
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM------KLDLSAAAH 421
LK + D D+ K +Q+ DWR RPLP+ YAR+DTH+LLY++D M + D S H
Sbjct: 341 LKKFIDFDAQKQYQMADWRIRPLPQELFDYARSDTHFLLYIFDNMRNELVQRSDFSKPDH 400
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEE-------GYMNIFRSHALLNNQQKYALRELY 474
+ + V S + KYE P+++ E Y + R+ AL + +Q R ++
Sbjct: 401 -EGDKVWDVLQKSNEVALQKYEHPIYDAELGQGAGGWYKMLARTPALFSKEQFSVFRAVH 459
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIIL 534
KWRD +AR++D+ST YV+PNH +L +A+++P + + P QTVK ++ ++I
Sbjct: 460 KWRDDVAREQDDSTHYVMPNHQVLSIAKAMPPNRLALLGVAQPTTQTVKLRADELVSVIA 519
Query: 535 KAR 537
KA+
Sbjct: 520 KAK 522
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q R ++KWRD +AR++D+ST YV+PNH +L +A+++P + + P QTV
Sbjct: 448 SKEQFSVFRAVHKWRDDVAREQDDSTHYVMPNHQVLSIAKAMPPNRLALLGVAQPTTQTV 507
Query: 630 KEHVLDIHAIILKAR 644
K ++ ++I KA+
Sbjct: 508 KLRADELVSVIAKAK 522
>gi|374106609|gb|AEY95518.1| FACL001Cp [Ashbya gossypii FDAG1]
Length = 745
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/391 (40%), Positives = 238/391 (60%), Gaps = 25/391 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILL--EKYDAIESFCHPYEYELD 224
IE+PQL FK VDN+ F+P LKEKP+ALKPL +++L E+ + + HPYEYE+D
Sbjct: 129 IEKPQLLFKTPVDNTELHPFKPLLKEKPHALKPLEESLMLAPEEENFPAHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E P T + + E ++Q++ ELK+ +E+A+DLE+H+YRSY
Sbjct: 189 KQPYNDSVLEVRERIDPQPWEATEPIWVDNVESLSQMLDELKEVKELAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQIS+R KD++VDT+ LR+DL VLN + TD +VKVFHGA D+ WLQ+D GLYV
Sbjct: 249 GIVCLMQISSRSKDWLVDTIALRDDLHVLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT+ A + L P+ SLAYLL+ + + K +QL DWR RPLP+P YAR+DTH+
Sbjct: 309 VSLFDTYHASRALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------KPVFNEE 450
LL +YD ++ L A GK VL+ SRN+ K ++E P+ + E
Sbjct: 369 LLSIYDDLRNALVKA--GKLAEVLNA---SRNVAKRRFEYTSFRPRIPDSNVYSPIESTE 423
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + L +++ L++LY+WRD +AR DES YV+PN +L+ + P + G
Sbjct: 424 PWRKLMYQYNLPPSKEPL-LKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAG 482
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
+ + V V+ + + A ++K L+++
Sbjct: 483 VLSVSTYVTDYVRSNARTL-ANLIKRTLETI 512
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
L++LY+WRD +AR DES YV+PN +L+ + P + G+ + V V+ + +
Sbjct: 442 LKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSVSTYVTDYVRSNARTL 501
Query: 637 HAII 640
+I
Sbjct: 502 ANLI 505
>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 756
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/530 (33%), Positives = 275/530 (51%), Gaps = 37/530 (6%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYL 91
++V+ T+T S N +S + + S +++ L +++K ++ L
Sbjct: 16 ALVQVTRTVGQLSSEDLNFHRTSSAEFSESLDEQSTRIIALTSAVIKAATAGTDVTGPTL 75
Query: 92 EGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNV 145
+ + + + D LLE + +D G K +
Sbjct: 76 SDEDSVEDNWRGVVDVIDSLLEKADACLDEFTGV--------------------IKKLSP 115
Query: 146 WQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAI 204
QE KK+ N+ + + G +I +PQL F+ K DN+ F+P L+ KP+A+ PL
Sbjct: 116 SQEEQAPIKKAPNFPTIYDYGPSKIPKPQLLFQRKPDNTDMGPFKPLLESKPHAIVPLEK 175
Query: 205 LLE--KYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLV 262
L+ + + + HPYE E+ + P + LP T + + V Q++
Sbjct: 176 CLKTKQMEGAIGYPHPYEAEILASEYPNSVYQVSPPVEYLPFESTTATFVDTLDGVRQML 235
Query: 263 SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKN 321
ELKQ +EIAIDLE+H+ SY G LMQISTRDKD++VDTL+ REDL++LNEV D
Sbjct: 236 KELKQAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLQPWREDLQMLNEVFADPK 295
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 381
I+KV HG+ DI WLQ+D GLYVVGMFDT A L P++SL +LL + + ++DK +Q
Sbjct: 296 ILKVLHGSTMDIIWLQRDLGLYVVGMFDTFHAASALGFPKRSLKFLLSKFVNFEADKRYQ 355
Query: 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLK 441
DWR RPLP YAR+DTHYLLY+YD ++ DL + + + S++ +
Sbjct: 356 TADWRARPLPPAMFDYARSDTHYLLYIYDRLRNDLIDNSTEDASHIDYVNERSKHEALQR 415
Query: 442 YEKPVFNE-EGYMN------IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
YE+PV++ GY ++R A L+ +Q + +++WRD +AR +DE V P
Sbjct: 416 YERPVYDAVNGYGPGGWYDLLWRHSANLSKEQFAVFKAVHQWRDEVARAEDEGWQCVFPK 475
Query: 495 HMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
HML ++A +P D+ +F +P+ KE D+ +I KA++ + P
Sbjct: 476 HMLFKLATVMPLDMGSLFRTLSPMTPITKERSHDLLEVIKKAKVAGIDGP 525
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 567 HDSN--NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP 624
H +N +Q + +++WRD +AR +DE V P HML ++A +P D+ +F +P
Sbjct: 439 HSANLSKEQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATVMPLDMGSLFRTLSP 498
Query: 625 VPQTVKEHVLDIHAIILKARLQPLTKP 651
+ KE D+ +I KA++ + P
Sbjct: 499 MTPITKERSHDLLEVIKKAKVAGIDGP 525
>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
Length = 1465
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 228/378 (60%), Gaps = 15/378 (3%)
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFC--HPYEYELDL-- 225
++PQ +F K+DNS + F KL+EK +AL A + D + +PY E+
Sbjct: 163 DKPQDRFDEKIDNS-DAPFVSKLREKVHALINGAATVVADDEDDEMAPRNPYYPEIKGLK 221
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE--IAIDLEYHNYRSY 283
Y P + EEP + + L + + E + Q++ L + IA+DLE+H+YRSY
Sbjct: 222 YAPWQ-LEASEEPYEMIGLDKVSYLWVDSEENLMQMMKSLTAAEARVIAVDLEHHSYRSY 280
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQIST +D++VDTL LR L+ LN+V D VKV HG+D DI WLQ+D GLY
Sbjct: 281 MGLTCLMQISTAQEDFLVDTLALRGKLQTLNQVFCDPEKVKVLHGSDMDILWLQRDLGLY 340
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
+V +FDT +A + L PR SLAY+LK +C++D+DK +QL DWR RPL + ++YAR DT
Sbjct: 341 IVNLFDTGRAARLLQYPRFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTR 400
Query: 404 YLLYVYDCMKLD-LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI---FRSH 459
YLL++YD +K + L A A +++L+ T NS +C YEKP EE + + +
Sbjct: 401 YLLFIYDRLKKELLQAGAKSRESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGT 460
Query: 460 ALLNN---QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
L + QK + LY WRDR+AR +DES YV+PNH+L+++ + +P +F C+
Sbjct: 461 VYLRDLSALQKRVIVALYLWRDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCH 520
Query: 517 PVPQTVKEHVLDIHAIIL 534
PVP +++H L I +I+
Sbjct: 521 PVPLLIRKHALQITKMIV 538
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 626
D + QK + LY WRDR+AR +DES YV+PNH+L+++ + +P +F C+PVP
Sbjct: 464 RDLSALQKRVIVALYLWRDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCHPVP 523
Query: 627 QTVKEHVLDIHAIIL 641
+++H L I +I+
Sbjct: 524 LLIRKHALQITKMIV 538
>gi|367047893|ref|XP_003654326.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
gi|347001589|gb|AEO67990.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
Length = 882
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 189/557 (33%), Positives = 295/557 (52%), Gaps = 46/557 (8%)
Query: 12 DEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMT 71
D +++EL D VQ+A +V T++ + S P+ + + +D+++
Sbjct: 2 DSSSQELKPLRDA-VQSA---LVTVTRSVNALASEDLEFQRTVHPSVATRLGQNTDRLLQ 57
Query: 72 LVDSLLKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVL 125
L +LK+ + + LE D+ + + D LLE +T +D G
Sbjct: 58 LASGVLKSAAHFTAQREPRLEDVDDVEIQWKSVVDVIDSLLEKSDTCLDEYTG------- 110
Query: 126 PSQPKIVKESWNKNAKASNVWQEVHDNKKKS--ANWFMLNKGAVEIERPQLQFKVKVDNS 183
++K K+A + +EV + + +W + I +PQ F+ K DN
Sbjct: 111 -----LIK---RKDAPTVDSGREVKRPRTTNDRLDWSLKR---ANILKPQNAFEKKTDNF 159
Query: 184 YEQLFEPKLKEKPNALKPLAILLEKYDAIES---FCHPYEYELD-LYVPKEDFLKCEEPK 239
++P L KP+A PL LE + E + HPYE+E+ + P E CE PK
Sbjct: 160 ESGPWKPLLTNKPHAQVPLESSLELFTDEEGHPQYKHPYEHEITTMRYPTEVSQPCE-PK 218
Query: 240 QALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDY 299
+ LP+ + + + + V +++ ELKQ EIAIDLE+H+YR+Y G LMQISTR+KD+
Sbjct: 219 KYLPIEKSKAIWVDTYDGVLEMLEELKQATEIAIDLEHHDYRTYAGLLSLMQISTREKDW 278
Query: 300 IVDTL-KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP 358
IVDTL R LEVLNEV D IVKV HGA DI WLQ+D GLYVVG+FDT+ AC L
Sbjct: 279 IVDTLVPWRHKLEVLNEVFADPRIVKVLHGAFMDIIWLQRDLGLYVVGLFDTYYACDALG 338
Query: 359 MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LD 415
+SLA+LLK + D D+DK +QL DWR RPLP+ YAR+DTHYLLY+YD ++ +
Sbjct: 339 YAGRSLAFLLKKFADFDADKKYQLADWRIRPLPDEMFYYARSDTHYLLYIYDMLRNELAE 398
Query: 416 LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQQKY 468
LSA + + + S+ + +Y P+ + E G+ N + +S L N +Q
Sbjct: 399 LSAQSPPGEKPIDRVIQKSKEVSLQRYVHPLCDRETGAGSRGWYNTLIKSPTLYNGEQFA 458
Query: 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 528
+ ++KWRD +AR +DES Y++ +L +A+ +P D + +++ + + +K + +
Sbjct: 459 VYKAVHKWRDDVARREDESPYYIMTQQVLADIARILPTDPKALWSLLDSNARALKPRLTE 518
Query: 529 IHAIILKARLQSLTKPV 545
+ +I +AR P
Sbjct: 519 LFGVIERARAAGANGPT 535
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 529 IHAIILKARLQSLTKPVEKL--QPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDR 586
I +I K++ SL + V L + + G + + P N +Q + ++KWRD
Sbjct: 410 IDRVIQKSKEVSLQRYVHPLCDRETGAGSRGWYNTLIKSPTLYNGEQFAVYKAVHKWRDD 469
Query: 587 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 646
+AR +DES Y++ +L +A+ +P D + +++ + + +K + ++ +I +AR
Sbjct: 470 VARREDESPYYIMTQQVLADIARILPTDPKALWSLLDSNARALKPRLTELFGVIERARAA 529
Query: 647 PLTKPV 652
P
Sbjct: 530 GANGPT 535
>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
Length = 671
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 283/547 (51%), Gaps = 35/547 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++ F + A ++VK ++A S N L N + + S +++ L +S+
Sbjct: 2 EIAADFASYEEEAKTALVKTIRSATQISSEDLNFLRSFDKNVSASIDEESARLLNLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + + + + D+LLE + +D G
Sbjct: 62 LKVATSGSDLQIPELHNEDGVEENWRAIVDVIDELLEKADACLDEFTG------------ 109
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQL-F 188
I+K A+ V + K SAN+ + + G +I +PQL F + +N + F
Sbjct: 110 IIKRLSPSQAERGVVLGK----KTASANFPSVYDFGPSKIPKPQLLFNSRPNNKDDGTPF 165
Query: 189 EPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
P L+ KP+A+ PL+ + I S+ HPYE E+ P + P
Sbjct: 166 RPLLRSKPHAITPLSTSASETSPTGTITSYKHPYETEIRNSTYPSSVYTISVPGKLAPFE 225
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
T + E + +++ELK+ EIAIDLE+H+ SY G CLMQISTRDKD+IVDTLK
Sbjct: 226 TTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLK 285
Query: 306 -LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
RE+L+VLNEV +D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++SL
Sbjct: 286 PWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKKSL 345
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
+LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ DL +
Sbjct: 346 KFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIEHSTPSN 405
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQQKYALRELYKWR 477
NL+ S+ +YE+PV+N E G+ + + R+ L + +Q R +++WR
Sbjct: 406 NLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNSTLFSREQFAVFRAVHQWR 465
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D+IAR +DE YVL L ++A ++P D + +PV V+ ++ +I +A+
Sbjct: 466 DKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKQAK 525
Query: 538 LQSLTKP 544
+ T P
Sbjct: 526 IIGATGP 532
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q R +++WRD+IAR +DE YVL L ++A ++P D + +PV V
Sbjct: 451 SREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLV 510
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPP 674
+ ++ +I +A++ T P +L+ L +K++ + S P
Sbjct: 511 RARASELVQVIKQAKIIGATGP--ELRDVLFPLKQRTDESNPSTP 553
>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
Length = 741
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 181/528 (34%), Positives = 273/528 (51%), Gaps = 57/528 (10%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDS--------- 75
V+ A++++ + A SFP+ + A + VA +D ++ ++D+
Sbjct: 12 FVEAAFQTVRQYCTFASSFPTNDDYEYQSAFRGFPRHVAKHADALLDIMDACVAQIPKKR 71
Query: 76 -LLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKE 134
++ + N +S + L + + E D LLE+++ +D G + + +
Sbjct: 72 RIVLSSNSLRSGNVLQAAQRHTAIMETVDSLLENVDHLLDEARGQR----------LHGD 121
Query: 135 SWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKE 194
+ A S + N S+ + I RPQL F+ VDNS+ +
Sbjct: 122 EQLQVAFGSAL------NSGASSGGKSGQTQSATILRPQLTFETPVDNSHAKF------- 168
Query: 195 KPNALKPLAILLEKYDAIESFC----HPYEYELDLY-VPKEDFLKCEEPKQALPLSDTPL 249
+ D S C HPY ++ + VP L E+ KQ LPL TPL
Sbjct: 169 --------RATVHHADGSTSLCDVDTHPYAELIEQFKVPTLQLLPTED-KQYLPLETTPL 219
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ E + L++ L +E+A+DLE+H++RS+QG TCLMQ+STR +DYIVD L+LR
Sbjct: 220 TFVETVEGLDALIAALSACREVAVDLEHHDFRSFQGITCLMQLSTRSEDYIVDVLRLRSH 279
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
+ LN V D NI+KVFHGA D++WLQKDFGLYV MFDT A + L MP SLA+ +
Sbjct: 280 MHRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDTGIALQTLHMP-HSLAFAVD 338
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ---NL 426
H+C V DK +Q DWR RP+P I YAR DTHYLLYV+D +K L A G+ NL
Sbjct: 339 HFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYVHDRLKA-LLLHAEGRASVGNL 397
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMN--IFRSHALLNNQQKYALRELYKWRDRIARDK 484
++ + +SR +C +YEKP+ + + + +S L+ Q LR ++ WRD+ ARD
Sbjct: 398 LVHVYQDSRRLCLTRYEKPMLDVDTTYREAMGKSLGGLSATQLEVLRVVFNWRDQAARDA 457
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE---HVLDI 529
DES ++ +LQ+A +P + I ACC PV V+ H+ D+
Sbjct: 458 DESPPAIMHASAILQIASKLPTSAKEILACCAPVSLVVRRDIGHLCDL 505
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE---HV 633
LR ++ WRD+ ARD DES ++ +LQ+A +P + I ACC PV V+ H+
Sbjct: 443 LRVVFNWRDQAARDADESPPAIMHASAILQIASKLPTSAKEILACCAPVSLVVRRDIGHL 502
Query: 634 LDI 636
D+
Sbjct: 503 CDL 505
>gi|154278361|ref|XP_001539994.1| exosome component 3'-5' exonuclease [Ajellomyces capsulatus NAm1]
gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 807
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 283/547 (51%), Gaps = 35/547 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++ F + A ++VK ++A S N L N + + S +++ L +S+
Sbjct: 2 EIAADFASFEEEAKTALVKTIRSATQISSEDLNFLRSFDNNVSASIDEESVRLLNLSNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + + + + D+LLE + +D G
Sbjct: 62 LKVATSGSDLQIPELHNEDGVEENWRAIVDVIDELLEKADACLDEFTG------------ 109
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQL-F 188
I+K A+ V + K SAN+ + + G +I +PQL F + +N + F
Sbjct: 110 IIKRLSPSQAERDVVLGK----KTASANFPSVYDFGPSKIPKPQLLFNSRPNNKDDGTPF 165
Query: 189 EPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
P L+ KP+A+ PL+ + I S+ HPYE E+ P + P
Sbjct: 166 RPLLRTKPHAITPLSTSASETSPNGTITSYKHPYETEIRNSTYPSSVYTISVPGKFAPFE 225
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
T + E + +++ELK+ EIAIDLE+H+ SY G CLMQ+STRDKD+IVDTLK
Sbjct: 226 TTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDTLK 285
Query: 306 -LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
RE+L+VLNEV +D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++SL
Sbjct: 286 PWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKKSL 345
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
+LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ DL +
Sbjct: 346 KFLLEKFVNFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNDLIEHSTPSN 405
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWR 477
NL+ S+ +YE+PV+N E G+ ++ R+ L + +Q R +++WR
Sbjct: 406 NLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLVRNSTLFSREQFAVFRAVHQWR 465
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D+IAR +DE YVL L ++A ++P D + +PV V+ ++ +I KA+
Sbjct: 466 DKIARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKKAK 525
Query: 538 LQSLTKP 544
+ T P
Sbjct: 526 IIGATGP 532
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R +++WRD+IAR +DE YVL L ++A ++P D + +PV V+
Sbjct: 453 EQFAVFRAVHQWRDKIARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRA 512
Query: 632 HVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPP 674
++ +I KA++ T P +L+ L +K++ + S P
Sbjct: 513 RASELVQVIKKAKIIGATGP--ELRDVLFPLKQRTDESNPSTP 553
>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
Length = 894
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 233/401 (58%), Gaps = 14/401 (3%)
Query: 148 EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE 207
E N KK N + +PQL+F+ +DN+ ++P L +KPNA PL L
Sbjct: 170 ETTPNAKKPRTALASNMRNANMAKPQLEFERAIDNTS---WKPVLSKKPNASVPLEESLA 226
Query: 208 KYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQ 267
+ A HPYE E+ E + EP P+ T + E V +++ ELK+
Sbjct: 227 RDSADSGSKHPYETEILAANYPEQVYQKAEPILYHPVKSTTAKWVDTYEGVLEMLGELKK 286
Query: 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVF 326
+EIA+DLE+H+ R+Y G LMQISTRD+D+IVDTLK R LEVLNEV T+ IVKVF
Sbjct: 287 AKEIAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRHQLEVLNEVFTNPKIVKVF 346
Query: 327 HGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWR 386
HGA D++WLQ+D GLY+ G+FDT A + L P++SLAYLLK + D D+DK +Q+ DWR
Sbjct: 347 HGAHMDMQWLQRDLGLYINGLFDTFFAAEILGYPQRSLAYLLKRFVDFDADKKYQMADWR 406
Query: 387 HRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAAAHGKQNLVLSTFTNSRNICKLKYE 443
RPLPE YAR+DTHYLLY++D ++ LD S + + +++ S+ + +YE
Sbjct: 407 IRPLPEEMFYYARSDTHYLLYIFDRIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYE 466
Query: 444 KPVFNEE------GYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
F+ E G+ + + + L+ +Q A R ++KWRD AR DESTGYVLPN
Sbjct: 467 GLDFDPETGHGSRGWYGVLLKNPMPLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAA 526
Query: 497 LLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+ ++A+ +P D + + + + K +V +I A K R
Sbjct: 527 IAEIARHMPPDAKALHSLIHSNSIIAKRNVGEIWAAFKKGR 567
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q A R ++KWRD AR DESTGYVLPN + ++A+ +P D + + + +
Sbjct: 493 SGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHSNSIIA 552
Query: 630 KEHVLDIHAIILKAR 644
K +V +I A K R
Sbjct: 553 KRNVGEIWAAFKKGR 567
>gi|367031894|ref|XP_003665230.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
gi|347012501|gb|AEO59985.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
Length = 860
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 179/552 (32%), Positives = 296/552 (53%), Gaps = 42/552 (7%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E S+ L + ++V T++ + + P+ + + +++++ L +
Sbjct: 2 ESSQDLKSLRDTVHSALVTVTRSVNALANEDLQFQRTVHPSVATRLDQNTERILRLARGV 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK+ + S + LE D+ + + D LLE +T +D G
Sbjct: 62 LKSASNFTSQREPQLEDVDDVEIQWKGVVDVIDSLLEKSDTCLDEYTG------------ 109
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSA--NWFMLNKGAVEIERPQLQFKVKVDNSYEQLF 188
+VK K+A + + +E+ ++ ++ +W M I +PQ F+ K+DN +
Sbjct: 110 LVK---RKDAPTAELGRELKRSRSTTSRLDWSMKR---ANILKPQNAFERKIDNFDSGPW 163
Query: 189 EPKLKEKPNALKPLAILLEKY---DAIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPL 244
+P + KP+A PL L+ + + + HPYE E+ ++ P++ + CE P + LP+
Sbjct: 164 KPLMTSKPHARVPLETSLDTFVDEEGRTQYKHPYEQEITNMQYPEQVYRSCE-PIKYLPM 222
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
T + + E V +++ ELKQ EIA+DLE+H++R+Y G LMQISTR+KD+IVDTL
Sbjct: 223 ETTKAIWVDTYEGVLEMLQELKQATEIAVDLEHHDFRTYAGLLSLMQISTREKDWIVDTL 282
Query: 305 -KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
R LEVLNEV D IVKV HGA D+ WLQ+D GLY+VG+FDT A L +S
Sbjct: 283 VPWRHKLEVLNEVFADPKIVKVLHGAFMDVIWLQRDLGLYIVGLFDTFYASDTLGYAGKS 342
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
LA+LLK + D D+DK +QL DWR RPLPE YAR+DTH+LLY+YD ++ +L+ A
Sbjct: 343 LAFLLKKFADFDADKKYQLADWRIRPLPEEMFYYARSDTHFLLYIYDMLRNELAELASQN 402
Query: 424 Q---NLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQQKYALREL 473
N + S+ + +YE PV + E G+ N + +S L N +Q + +
Sbjct: 403 NPDGNPIDRVIQKSKEVSLQRYEHPVCDPETGAGNRGWYNTLIKSPTLYNGEQFAVYKAV 462
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
+KWRD +AR +DES +++ +L +A+ IP D++ +++ + +K + ++ +I
Sbjct: 463 HKWRDDVARQEDESPFFIMTQQVLSDIARIIPTDMKALWSLLESNARGLKGRLEELFQVI 522
Query: 534 LKARLQSLTKPV 545
+AR + + P
Sbjct: 523 QEARARGVNGPT 534
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 49/90 (54%)
Query: 563 VSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 622
+ P N +Q + ++KWRD +AR +DES +++ +L +A+ IP D++ +++
Sbjct: 445 IKSPTLYNGEQFAVYKAVHKWRDDVARQEDESPFFIMTQQVLSDIARIIPTDMKALWSLL 504
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTKPV 652
+ +K + ++ +I +AR + + P
Sbjct: 505 ESNARGLKGRLEELFQVIQEARARGVNGPT 534
>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
Length = 827
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 179/545 (32%), Positives = 282/545 (51%), Gaps = 32/545 (5%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++K F + A ++VK ++A S N + + V S +++ L +S+
Sbjct: 2 EIAKDFASYEEQAKTALVKTVRSATQVSSQDLNFHRSLNEDISESVDEQSARLLNLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + D+ + + D+LLE + +D G + PSQ +
Sbjct: 62 LKVATSGSGLRIPELHNEDDLEDNWRSIVDVIDELLEKADACLDEFTGV-IKKLSPSQEQ 120
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+ A A + V+D G +I +PQL F + +N+ F+P
Sbjct: 121 RSAALSKRPATAQ--FPSVYDF------------GPSKISKPQLLFTSRPNNNDTSPFKP 166
Query: 191 KLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
L+ KP+A+ PL+ L + I + HPYE E+ + P + T
Sbjct: 167 LLRSKPHAIAPLSESLGEAGPNGTITFYKHPYETEIRNSPYPQSTYSISPPVEYKSFDAT 226
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-L 306
+ E V +++ELK+ EIAIDLE+H+ SY G CLMQISTRD+D+IVDTLK
Sbjct: 227 TATFVDTLEGVHSMLAELKEATEIAIDLEHHDVHSYHGLVCLMQISTRDQDWIVDTLKPW 286
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
RE+L+VLNEV TD I+KV HG+ DI WLQ+D GLY+VG+FDT+ L P++SL +
Sbjct: 287 REELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDTYHGSVALNYPKRSLKF 346
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ L + L
Sbjct: 347 LLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVENSTPAHKL 406
Query: 427 VLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWRDR 479
V SR +YE+PV+N E G+ ++ R+ L + +Q R +++WRD+
Sbjct: 407 VDYVLEKSRQEALQRYERPVYNAETGEGGGGWHDVLIRNSTLFSREQFAVFRAVHQWRDK 466
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
+AR +DE Y+L L ++A ++P D +F +PV V+ + ++ +I +A+L
Sbjct: 467 LARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTISPVSPPVRARMSELVQVIKEAKLA 526
Query: 540 SLTKP 544
T P
Sbjct: 527 GATGP 531
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q R +++WRD++AR +DE Y+L L ++A ++P D +F +PV V
Sbjct: 450 SREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTISPVSPPV 509
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
+ + ++ +I +A+L T P
Sbjct: 510 RARMSELVQVIKEAKLAGATGP 531
>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
Length = 544
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 167/426 (39%), Positives = 239/426 (56%), Gaps = 53/426 (12%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE 230
+PQL FK K+ N + F KLKEKP+ L PL+ +E+ D HPYE+EL + P
Sbjct: 26 KPQLNFKEKITND-SKPFRHKLKEKPHCLNPLS--MEQRDR-----HPYEFELKKFSPDS 77
Query: 231 DFLKCE-EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCL 289
FLK + E P+S TPL+M+ E L+ +L Q I +DLE+H+ RSY+G TCL
Sbjct: 78 TFLKIKHEVPHFQPVSSTPLIMVDTTEAFEHLLRDLLSQTVIGVDLEHHSDRSYRGITCL 137
Query: 290 MQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD 349
MQIST DYI+DTL+L + L+ LN+V D NIVK+F GADSD+ WLQ+DFG+YVV +FD
Sbjct: 138 MQISTDKTDYIIDTLQLWDHLQPLNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFD 197
Query: 350 THQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
T QA L ++ L +LL+HYC V +K +QL DWR RPLP+ ++YAR DTHYL+Y+Y
Sbjct: 198 TLQAASLLGFQKKGLYFLLQHYCQVHVNKKYQLADWRIRPLPQEMVKYAREDTHYLIYIY 257
Query: 410 DCMKLDL-----------------------------------SAAAHGKQNLVLSTFTNS 434
+ MK DL + N VL + NS
Sbjct: 258 ERMKQDLYSRHCLGDVKITPEMKKGTPEEPKDRKSKSKSSQITPVNEKGVNQVLQVWNNS 317
Query: 435 RNICKLKYEKPVFNE---EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYV 491
R++C +Y E + Y ++ + NNQQ YAL+E++ WRDR+AR+ DES YV
Sbjct: 318 RSVCLKQYRIQTLEEMYSKFYSSLNKEGKKFNNQQSYALQEIFSWRDRVARELDESPHYV 377
Query: 492 LPNHMLLQMAQSIPRDIQGIFACCNPVP--QTVKEHVLDIHAIILKARLQSL-TKPVEKL 548
+ +L + + + I P+ + V +H+ +H +I+KA+ ++ + P+ K
Sbjct: 378 MTKFNMLNIISQLHNQPENIL---QPISRHRFVHQHLPQLHEVIVKAKAIAIQSSPISKK 434
Query: 549 QPSLDG 554
Q G
Sbjct: 435 QTKKRG 440
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 537 RLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTG 596
R+Q+L + K SL+ KK NNQQ YAL+E++ WRDR+AR+ DES
Sbjct: 326 RIQTLEEMYSKFYSSLNKEGKK----------FNNQQSYALQEIFSWRDRVARELDESPH 375
Query: 597 YVLPNHMLLQMAQSIPRDIQGIFACCNPVP--QTVKEHVLDIHAIILKARLQPL-TKPVE 653
YV+ +L + + + I P+ + V +H+ +H +I+KA+ + + P+
Sbjct: 376 YVMTKFNMLNIISQLHNQPENIL---QPISRHRFVHQHLPQLHEVIVKAKAIAIQSSPIS 432
Query: 654 KLQPSLDGMKKKKQQQQVSPP 674
K Q G VS P
Sbjct: 433 KKQTKKRGAASATAVPPVSRP 453
>gi|452978276|gb|EME78040.1| hypothetical protein MYCFIDRAFT_107101, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 799
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 155/393 (39%), Positives = 224/393 (56%), Gaps = 18/393 (4%)
Query: 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAI--LLEKYDAIESFCHPYEYELDL 225
++E+PQLQF+ N F+P L KP+A+ PL + ++ S HPY+ E++
Sbjct: 146 QLEKPQLQFQHVPKNDETPPFKPLLLSKPHAVVPLETEPIASDGESQASHPHPYQLEIEQ 205
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
Y EP P T ++ + ++ ELKQ +EIAIDLE+H+ R+Y G
Sbjct: 206 YRYPSSMYTQSEPIMHHPFETTTATLVDSEVALDAMLKELKQAKEIAIDLEHHDIRTYIG 265
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
LMQISTRDKD+IVDTLK R L+ LNEV D NI+KV HGA DI WLQ+D GLY+
Sbjct: 266 IVSLMQISTRDKDWIVDTLKPWRRKLQCLNEVFADPNILKVLHGAYMDIIWLQRDLGLYL 325
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDTH A + L P SLAYLLK + VD+ K +Q DWR RPLP+ YAR+DTHY
Sbjct: 326 VGLFDTHHAARALGYPAGSLAYLLKRFAGVDAQKKYQTADWRVRPLPQALFDYARSDTHY 385
Query: 405 LLYVYDCM------KLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF-- 456
LLY++D + + D H L T S +YE P+++ E F
Sbjct: 386 LLYIFDNLRNELIQRSDFGLPNHEGDKL-WDVLTKSSETALQRYEHPIYDVENGQGSFGW 444
Query: 457 -----RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
++ A+L +Q R +++WRD +AR++D+ST +V+PN L +A+S+P Q +
Sbjct: 445 YKLLAKTSAMLTKEQFSVFRAVHQWRDEVAREQDDSTNFVMPNWQLFNIAKSMPTTRQAL 504
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
F+ + QTV+ ++ A++ KA+ + + P
Sbjct: 505 FS-LGAISQTVRLRAGELAALVAKAKKEGINGP 536
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R +++WRD +AR++D+ST +V+PN L +A+S+P Q +F+ + QTV+
Sbjct: 458 EQFSVFRAVHQWRDEVAREQDDSTNFVMPNWQLFNIAKSMPTTRQALFS-LGAISQTVRL 516
Query: 632 HVLDIHAIILKARLQPLTKP--VEKL-QPSLDGMKKKKQQQQVSPP 674
++ A++ KA+ + + P E L +P G +K Q VS P
Sbjct: 517 RAGELAALVAKAKKEGINGPELAEVLSKPEHSGPRKSTSQNAVSKP 562
>gi|261206146|ref|XP_002627810.1| exosome component 3'-5' exonuclease [Ajellomyces dermatitidis
SLH14081]
gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
SLH14081]
Length = 814
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 179/551 (32%), Positives = 290/551 (52%), Gaps = 43/551 (7%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++ F + A +++K T++ S N N + V S +++ L +SL
Sbjct: 2 EIAADFVPYEEQAQAALIKTTRSVTQISSEDLNFHRSFDKNLSAYVDEESARILKLTNSL 61
Query: 77 LKTQNISKSMSKLY---------LEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPS 127
LK ++ S S+L LE + + D+LLE + +D G
Sbjct: 62 LK---VATSGSELRVPELRNEDGLEENWRTVVDVIDELLEKADACLDEFTGI-------- 110
Query: 128 QPKIVKESWNKNAKASNVWQEVHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYE 185
I K S ++ + + + +K+ ++ F + + G +I +PQL F + N+ +
Sbjct: 111 ---IKKLSPSQEERGAAL------SKRTPSSHFPSVYDFGPSKIPKPQLLFATRPKNNED 161
Query: 186 QL-FEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQA 241
F+P L+ KP+A+ PL+ L + S+ HPYE E+ P+++
Sbjct: 162 APPFKPLLRSKPHAITPLSTNLGETGPDGTTTSYKHPYETEIRNSTYPSSAFAISAPRES 221
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
P T + E V +++ELKQ EIAIDLE+H+ SY G CLMQISTR+KD+IV
Sbjct: 222 NPFETTTATFVDTLEGVHSMLAELKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIV 281
Query: 302 DTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
DTLK RE+L++LNEV D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P
Sbjct: 282 DTLKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDTYHAAVALNYP 341
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
++SL +LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ L +
Sbjct: 342 KRSLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVEHS 401
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALREL 473
NL+ S+ +YE+PV+N E G+ ++ R+ +L + +Q R +
Sbjct: 402 TPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRNSSLFSREQFAVFRAV 461
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
++WRD+IAR +DE YVL L ++A ++P D + +PV V+ ++ +I
Sbjct: 462 HQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSPLVRARASELVQVI 521
Query: 534 LKARLQSLTKP 544
+A++ T P
Sbjct: 522 KQAKIVGATGP 532
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q R +++WRD+IAR +DE YVL L ++A ++P D + +PV V
Sbjct: 451 SREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSPLV 510
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPP 674
+ ++ +I +A++ T P +L+ L +K+K + + S P
Sbjct: 511 RARASELVQVIKQAKIVGATGP--ELRDVLFPLKEKADESKPSTP 553
>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
18188]
Length = 814
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 179/551 (32%), Positives = 290/551 (52%), Gaps = 43/551 (7%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E++ F + A +++K T++ S N N + V S +++ L +SL
Sbjct: 2 EIAADFVPYEEQAQAALIKTTRSVTQISSEDLNFHRSFDKNLSAYVDEESARLLKLTNSL 61
Query: 77 LKTQNISKSMSKLY---------LEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPS 127
LK ++ S S+L LE + + D+LLE + +D G
Sbjct: 62 LK---VATSGSELRVPELRNEDGLEENWRTVVDVIDELLEKADACLDEFTGI-------- 110
Query: 128 QPKIVKESWNKNAKASNVWQEVHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYE 185
I K S ++ + + + +K+ ++ F + + G +I +PQL F + N+ +
Sbjct: 111 ---IKKLSPSQEERGAAL------SKRTPSSHFPSVYDFGPSKIPKPQLLFATRPKNNED 161
Query: 186 QL-FEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQA 241
F+P L+ KP+A+ PL+ L + S+ HPYE E+ P+++
Sbjct: 162 APPFKPLLRSKPHAITPLSTNLGETGPDGTTTSYKHPYETEIRNSTYPSSAFAISAPRES 221
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
P T + E V +++ELKQ EIAIDLE+H+ SY G CLMQISTR+KD+IV
Sbjct: 222 NPFETTTATFVDTLEGVHSMLAELKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIV 281
Query: 302 DTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
DTLK RE+L++LNEV D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P
Sbjct: 282 DTLKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDTYHAAVALNYP 341
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
++SL +LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ L +
Sbjct: 342 KRSLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVEHS 401
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALREL 473
NL+ S+ +YE+PV+N E G+ ++ R+ +L + +Q R +
Sbjct: 402 TPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRNSSLFSREQFAVFRAV 461
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
++WRD+IAR +DE YVL L ++A ++P D + +PV V+ ++ +I
Sbjct: 462 HQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSPLVRARASELVQVI 521
Query: 534 LKARLQSLTKP 544
+A++ T P
Sbjct: 522 KQAKIVGATGP 532
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q R +++WRD+IAR +DE YVL L ++A ++P D + +PV V
Sbjct: 451 SREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSPLV 510
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPP 674
+ ++ +I +A++ T P +L+ L +K+K + + S P
Sbjct: 511 RARASELVQVIKQAKIVGATGP--ELRDVLFPLKEKADESKPSTP 553
>gi|398390487|ref|XP_003848704.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
gi|339468579|gb|EGP83680.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
Length = 796
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 221/385 (57%), Gaps = 17/385 (4%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAI--LLEKYDAIESFCHPYEYELDLY 226
IE+PQL F N+ + F+P L+ KP+A PL + D ++ HPY+ E++ Y
Sbjct: 139 IEKPQLLFDHPPTNTEQSPFKPLLQSKPHASFPLETEPIASDDDTRLAYPHPYQLEIEQY 198
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
EP P T + E + +++ ELKQ +EIAIDLE+H+ RSY G
Sbjct: 199 RYPSSVYTHSEPIPYHPFETTTATFVDTEESLAEMLEELKQAKEIAIDLEHHDNRSYIGI 258
Query: 287 TCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
LMQISTRDKD+IVDTLK R L+ LNEV + IVKV HGA D WLQ+D GLY+V
Sbjct: 259 VSLMQISTRDKDWIVDTLKPWRRKLQCLNEVFANPTIVKVLHGAFMDAIWLQRDLGLYLV 318
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
G+FDTH AC+ L SLA+LLK + DVD+ K Q+ DWR RPLP+ YAR+DTHYL
Sbjct: 319 GLFDTHYACRALGYAGGSLAFLLKKFADVDAQKQHQMADWRVRPLPKELFDYARSDTHYL 378
Query: 406 LYVYDCM------KLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE---GYMNIF 456
LY++DCM + D S H L S + +YE P ++ E G M +
Sbjct: 379 LYIFDCMRNELIERSDFSKPDHEGDKL-WDVLQKSTEVALQRYEHPQYDAELGQGAMGWY 437
Query: 457 ----RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
R+ AL + +Q + ++ WRDR+AR++D+S +V+PNH + +A+++P +
Sbjct: 438 KLLSRTPALFSPEQFAVFKAVHHWRDRVAREQDDSIHFVMPNHQIFSLAKAMPPTRLALM 497
Query: 513 ACCNPVPQTVKEHVLDIHAIILKAR 537
P QTV+ ++ ++I++A+
Sbjct: 498 GIAQPTTQTVRLRADELLSVIVRAQ 522
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 45/73 (61%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q + ++ WRDR+AR++D+S +V+PNH + +A+++P + P QTV+
Sbjct: 450 EQFAVFKAVHHWRDRVAREQDDSIHFVMPNHQIFSLAKAMPPTRLALMGIAQPTTQTVRL 509
Query: 632 HVLDIHAIILKAR 644
++ ++I++A+
Sbjct: 510 RADELLSVIVRAQ 522
>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 1631
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 185/557 (33%), Positives = 288/557 (51%), Gaps = 53/557 (9%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E S+ F Q ++V ++A S S +P+ S + +++++ L + L
Sbjct: 2 EASEDFRSQQQKIQAALVAVNRSANSITSEDLTFQRTVNPDVASQLDDNAERLLRLTNKL 61
Query: 77 LKTQNISKSM-SKLYLEGQKDI------LTEANDKLLESINTRIDVMAG------TKTPS 123
LK S + L LE D+ + + D LLE +T +D G T
Sbjct: 62 LKASAASTGRKAPLELEDADDVDLNWQGVVDVIDALLEKADTSLDEYTGMLKRKDAPTTE 121
Query: 124 VLPS--QPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVD 181
V P +PK E + + + +N I +PQ F+ K D
Sbjct: 122 VGPESKKPKPTTERLDWSIRRAN------------------------IAKPQELFEHKPD 157
Query: 182 NSYEQLFEPKLKEKPNALKPLAILLEKY---DAIESFCHPYEYELDLYVPKEDFLKCEEP 238
N + ++P L KP+A PLA L + + + HPYE E+ E EP
Sbjct: 158 NFDKGPWKPLLTTKPHATVPLAESLTTFVDENGSVQYKHPYETEITKMRYPEAVYHKSEP 217
Query: 239 KQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 298
P T + + E V ++ EL+Q IA+DLE+H++R+Y G LMQISTR+KD
Sbjct: 218 ILYQPTEGTKAIWVDTFEGVQAMLEELRQADVIAVDLEHHDFRTYTGLLSLMQISTREKD 277
Query: 299 YIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL 357
++VDTL R LE+LNEV D +KVFHGA SDI WLQ+D GLY+VG+FDT+ AC L
Sbjct: 278 WVVDTLTPWRHRLEILNEVFADPTKIKVFHGATSDIVWLQRDLGLYIVGLFDTYFACDCL 337
Query: 358 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417
P +SLAYLLK + D D+DK +Q+ DWR RPLPE + YAR+DTH+LLYVYD ++ +L+
Sbjct: 338 EYPARSLAYLLKKFVDFDADKKYQMADWRIRPLPEEMLYYARSDTHFLLYVYDMVRNELA 397
Query: 418 AAAHG---KQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQQK 467
+ + +L S+ L++E + + E G++N + R++++LN+ Q
Sbjct: 398 EKSEKLLPEASLTGYVLRRSKETSMLRHEVALCDPETGLGSRGWLNSLMRTYSMLNSSQF 457
Query: 468 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVL 527
+ +++WRD +AR DES GYV+P + +A+ +P D + +++ N + K +
Sbjct: 458 AVFKAIFRWRDDLARRLDESPGYVMPIRSVGDIARILPSDRKAMWSLLNNAARETKSSME 517
Query: 528 DIHAIILKARLQSLTKP 544
+I +I +A+L+ P
Sbjct: 518 EIFLLIQQAKLRGADGP 534
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+ Q + +++WRD +AR DES GYV+P + +A+ +P D + +++ N +
Sbjct: 453 NSSQFAVFKAIFRWRDDLARRLDESPGYVMPIRSVGDIARILPSDRKAMWSLLNNAARET 512
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K + +I +I +A+L+ P
Sbjct: 513 KSSMEEIFLLIQQAKLRGADGP 534
>gi|403344491|gb|EJY71591.1| hypothetical protein OXYTRI_07421 [Oxytricha trifallax]
Length = 967
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 232/402 (57%), Gaps = 48/402 (11%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA--------------ILLEKY----- 209
+++ Q+Q+ +DNSY + F P L KPN+ PL+ +L ++
Sbjct: 179 LKKSQIQWWTSIDNSY-RPFVPTLASKPNSKYPLSEDIVTAQRQIAANPLLNRQFQLGDH 237
Query: 210 ----DAIESFCHPYEYELDLYVPKEDFLKC--EE--PKQALPLSDTPLMMITEPEQVTQL 261
DA+ S HPY E++ + + ++ EE P++ L DTP + + E++ ++
Sbjct: 238 KQQKDAV-SLSHPYYQEIEEFQEEVGNMQTLQEEIVPQKYKALEDTPFEFVDDEEKLDEM 296
Query: 262 VSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDK 320
V L +EIAIDLE+HN+RSYQG+TCLMQIS R DY+VDTLKLR+ L L + TD
Sbjct: 297 VKILSGSREIAIDLEHHNHRSYQGFTCLMQISNRTHDYVVDTLKLRQSLGPKLLPLFTDP 356
Query: 321 NIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTF 380
I KV HGAD D++WLQKDF LYVV MFDT QA + L P LA+LL+ YC V +DK +
Sbjct: 357 QITKVLHGADYDVEWLQKDFSLYVVNMFDTGQAARILQKPGFGLAFLLQSYCGVLTDKKY 416
Query: 381 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN------LVLSTFTNS 434
QL DWR RP+PE ++YAR DTHYLLYVYD M+ +L A KQN + S
Sbjct: 417 QLADWRQRPIPEEMLKYAREDTHYLLYVYDLMRKELIQNA-VKQNASNPLSMYRQVLIKS 475
Query: 435 RNICKLKYEKPVFNEEG-YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLP 493
+C+ +YEKP+ + YM + R+ + + +Q L+ L K RD IAR +DES+ Y +P
Sbjct: 476 NQLCQKQYEKPIVKDYNYYMIVGRNKTIQSMKQISVLKMLVKLRDYIARLEDESSQYAIP 535
Query: 494 NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
NH++ QM + +P I CC +I IILK
Sbjct: 536 NHIMFQMGKDLPTTRNQIKDCCRS----------NITGIILK 567
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 635
L+ L K RD IAR +DES+ Y +PNH++ QM + +P I CC +
Sbjct: 511 VLKMLVKLRDYIARLEDESSQYAIPNHIMFQMGKDLPTTRNQIKDCCRS----------N 560
Query: 636 IHAIILK 642
I IILK
Sbjct: 561 ITGIILK 567
>gi|425768291|gb|EKV06818.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
Pd1]
gi|425770373|gb|EKV08846.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
PHI26]
Length = 754
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 175/530 (33%), Positives = 277/530 (52%), Gaps = 37/530 (6%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYL 91
++V+ T+T S N +S + + S +++ L +++K +++ L
Sbjct: 16 ALVQVTRTVGQLSSEDLNFHRTSSAEFSESLDEQSARIIALTSAVIKAATAGTDVTEPAL 75
Query: 92 EGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNV 145
++ + + + D LLE + +D G + PSQ
Sbjct: 76 HDEESVEDNWRGVVDVIDSLLEKADACLDEFTGV-IKKLSPSQ----------------- 117
Query: 146 WQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAI 204
E KK N+ + + G +I +PQL F K DN+ F+P LK KP+A+ PL
Sbjct: 118 --EEQAPIKKPPNFPTIYDYGPSKIPKPQLLFDRKPDNTDMGPFKPLLKSKPHAIVPLEK 175
Query: 205 LLE--KYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLV 262
L+ K + + HPYE E+ + + P + LP T + + V +++
Sbjct: 176 CLKTKKMEGGIGYPHPYETEILASEYPKPVYQVSPPVEYLPFESTTATFVDTLDGVKEML 235
Query: 263 SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKN 321
ELK+ +EIAIDLE+H+ SY G LMQISTR KD+++DTL+ REDL++LNEV D
Sbjct: 236 KELKKAKEIAIDLEHHDVHSYHGLVSLMQISTRGKDWVIDTLQPWREDLQILNEVFADPK 295
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 381
I+KV HG+ DI WLQ+D GLYVVGMFDT A L P++SL +LL + + ++DK +Q
Sbjct: 296 ILKVLHGSTMDIIWLQRDLGLYVVGMFDTFHAASALGFPKRSLKFLLSKFVNFEADKRYQ 355
Query: 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLK 441
DWR RPLP YAR+DTHYLLY+YD ++ DL + + + + S++ +
Sbjct: 356 TADWRARPLPPAMFDYARSDTHYLLYIYDRLRNDLIDNSTEEASHIDYVNERSKHEALQR 415
Query: 442 YEKPVF---NEEG----YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
YE+PV+ N G Y ++R+ L +Q + +++WRD +AR +DE V P
Sbjct: 416 YERPVYDAVNGHGPGGWYDLLWRNSGNLPKEQFAVFKAVHQWRDEVARAEDEGWQCVFPK 475
Query: 495 HMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
HML ++A +P D+ +F +P+ KE D+ +I +A++ S+ P
Sbjct: 476 HMLFKLATIMPLDMGSLFRTLSPMTPIAKERSHDLLEVIKQAKVSSVDGP 525
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q + +++WRD +AR +DE V P HML ++A +P D+ +F +P+ KE
Sbjct: 446 EQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATIMPLDMGSLFRTLSPMTPIAKE 505
Query: 632 HVLDIHAIILKARLQPLTKP 651
D+ +I +A++ + P
Sbjct: 506 RSHDLLEVIKQAKVSSVDGP 525
>gi|426195548|gb|EKV45477.1| hypothetical protein AGABI2DRAFT_186278 [Agaricus bisporus var.
bisporus H97]
Length = 870
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 231/415 (55%), Gaps = 40/415 (9%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFC--HPYEYEL 223
A ++ +PQL FK K DN + + P L K NAL PL + D + HPY YE+
Sbjct: 178 ASQLPKPQLSFKYKADND-DAPWYPSLTHKYNALVPLGHVYTDADDDTTVIANHPYRYEI 236
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ P L++TP I+ P+ + ++++L+ EIA+DLE+H+YR+Y
Sbjct: 237 NHITYPSHVYAPANPSPPASLAETPYSWISNPDGLQNMLTKLRAASEIAVDLEHHSYRTY 296
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G+ CLMQISTR++D++VD + LR+++EVLNEV TD IVKVFHGA+SDI WLQ+DF LY
Sbjct: 297 LGFLCLMQISTREEDFVVDVIALRDEMEVLNEVFTDPKIVKVFHGAESDIVWLQQDFNLY 356
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV +FDT+ A K L PR LA LL+ YCD DK +QL DWR RPLP+ ++YAR+DTH
Sbjct: 357 VVNLFDTYHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDTH 416
Query: 404 YLLYVYDCMK---LDLSAAA-----------HGKQNLVLS-------------------- 429
+LL++YD ++ LD A H N VL+
Sbjct: 417 FLLFIYDNLRNALLDRGGPASRSPHASKNPLHASINHVLTRSSETCLRVYVKEVYDRSSG 476
Query: 430 TFTNSRNICKLKYEKPVFN--EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
T +N + K+ KP+F Y + + QK R ++ WR+ ++R++DES
Sbjct: 477 TGSNGWDTLARKWNKPLFTALSFSYQSSSDEGHSVPEMQKAVYRAVHWWRESVSREEDES 536
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFAC-CNPVPQTVKEHVLDIHAIILKARLQSL 541
T YVLPN L ++A++ P D+ + + VP VK ++ ++ A +SL
Sbjct: 537 TRYVLPNQYLFRIAEAPPGDLGNLLRLFGSSVPVVVKRRAKELLDVVRDAVKRSL 591
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 549 QPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 608
+P + Q H QK R ++ WR+ ++R++DEST YVLPN L ++A
Sbjct: 491 KPLFTALSFSYQSSSDEGHSVPEMQKAVYRAVHWWRESVSREEDESTRYVLPNQYLFRIA 550
Query: 609 QSIPRDIQGIFAC-CNPVPQTVKEHVLDIHAIILKA 643
++ P D+ + + VP VK ++ ++ A
Sbjct: 551 EAPPGDLGNLLRLFGSSVPVVVKRRAKELLDVVRDA 586
>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 237/416 (56%), Gaps = 40/416 (9%)
Query: 148 EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE 207
EVHD ++AN ++ I +PQ FK K+DNS F+PKL KP+ALK
Sbjct: 122 EVHD--MEAANALARSR----IIKPQQFFKTKIDNSESAPFKPKLTSKPHALKSFEESCN 175
Query: 208 KYDAIES--------FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 259
++ F HPYEYE+D E L+ EPK+ + T + + ++
Sbjct: 176 LRSGADTEFGKDPDYFPHPYEYEIDTLEYPESVLEISEPKKPKDWTSTSAIWVETESDLS 235
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
Q+VS+L Q EIA+DLE+H+YRSY G CLMQIS+R+KD+I+DTLKLR+ L VLNE+ +
Sbjct: 236 QMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKDWIIDTLKLRDSLVVLNEIFAN 295
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
NIVKVFHGA DI WLQ+D GLYVV +FDT+ A K L +PR SLAYLL++Y + + K
Sbjct: 296 PNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLGLPRFSLAYLLENYANFKTSKK 355
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
+QL DWR RPL P + YAR+DTH+LLYVYD ++ L ++ K VL SR + K
Sbjct: 356 YQLADWRMRPLSGPMLSYARSDTHFLLYVYDQLRNQLLSSGSQKMKEVLH---ESRQVAK 412
Query: 440 LKYEKPVFN------------------EEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
++E F +E Y +I L N + + LY WRD A
Sbjct: 413 RRFEFTRFRPTSVSGSKVSCPIMAPNAKEPYSSIMNQFN-LPNHTRPIVEALYLWRDAKA 471
Query: 482 RDKDESTGYVLPNHMLLQMA-QSIPRDIQGIFA---CCNPVPQTVKEHVLDIHAII 533
++ DES YV+PN +L+ + ++P D + I + V +V E V +++++
Sbjct: 472 KECDESVRYVMPNQLLVNFSLLALPVDKETILRNPYITDQVRNSVDELVTLLNSVM 527
>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 786
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/410 (37%), Positives = 235/410 (57%), Gaps = 17/410 (4%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDL 225
I +PQL+F+ N+ F P L KP+A PL L+ + +E + HPY+ E++
Sbjct: 122 IPKPQLKFEHLPTNNETGGFRPLLTSKPHAKIPLEECLKTFKDRRGLEQYPHPYQTEIEQ 181
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
Y + EP+Q P T ++ PE + +++ELK +EIAIDLE+H+ R+Y G
Sbjct: 182 YEYPPTLYETAEPQQYAPFDSTTATLVDTPEALAAMLAELKTAKEIAIDLEHHDNRTYIG 241
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
CLMQISTRDKD+IVDTLK R LE LNEV D +I+KV HGA DI WLQ+D GLY+
Sbjct: 242 MVCLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFMDIVWLQRDLGLYI 301
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT A + L SLAYLL+ + + + K +QL DWR RPL + +YAR DTH+
Sbjct: 302 VGLFDTFHAARALGYQAASLAYLLELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHF 361
Query: 405 LLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------YMN 454
LLY++D M+ +L S ++ ++N V NS+ +YE P+++ E Y
Sbjct: 362 LLYIFDNMRNELVNKSDFSNPEKNKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKL 421
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
I R+ QQ R +++WRD + R +DES +++PNH + +A+ +P + G+F
Sbjct: 422 ISRTPVQFTRQQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNA 481
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTKPV--EKLQPSLDGMKKKQQQQ 562
V + H ++ ++ +A+ + + P E LQ D M++ Q+ +
Sbjct: 482 IQHVGHITRAHADELVGVVAEAKERGASGPELHEVLQAVAD-MQRAQRAE 530
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPV 625
P QQ R +++WRD + R +DES +++PNH + +A+ +P + G+F V
Sbjct: 426 PVQFTRQQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHV 485
Query: 626 PQTVKEHVLDIHAIILKARLQPLTKPV--EKLQPSLDGMKKKKQQQQVS 672
+ H ++ ++ +A+ + + P E LQ D + ++ + + +
Sbjct: 486 GHITRAHADELVGVVAEAKERGASGPELHEVLQAVADMQRAQRAESEAA 534
>gi|296815198|ref|XP_002847936.1| exosome component 3'-5' exonuclease [Arthroderma otae CBS 113480]
gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
113480]
Length = 810
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/395 (38%), Positives = 232/395 (58%), Gaps = 13/395 (3%)
Query: 161 MLNKGAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPLAILLEKY--DAIESFCH 217
M + G+ +I +PQL F V+V+N + F+P LK KP+AL PL L D + + H
Sbjct: 155 MYSHGSSKIAKPQLGFDVRVNNLDDGSAFKPLLKSKPHALVPLEESLGGSLSDPTKPYHH 214
Query: 218 PYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEY 277
PYE E+ + EP+ P+ +T + E V +++ELK+ +EIA+DLE+
Sbjct: 215 PYEKEIGESTYPASVYEKREPQMYQPVENTKATFVETMEDVHAMLAELKKAKEIAVDLEH 274
Query: 278 HNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
H+ Y G CLMQISTR++D+IVDTLK R+ L+VLNEV D +IVKV HG+ D+ WL
Sbjct: 275 HDAHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIVKVLHGSSMDVIWL 334
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+D GLY+VG+FDT A L +P++SL +LL+ Y D+DK +Q DWR RPL +
Sbjct: 335 QRDLGLYLVGLFDTFHAASMLQLPKKSLKFLLQQYVGFDADKQYQTADWRIRPLLPGMLD 394
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE------E 450
YAR+DTH+LLY++D ++ +L A+ ++ + S+ +YE+P ++
Sbjct: 395 YARSDTHFLLYIFDRLRNELIEAS--GRDAIEYVLERSKECALQRYERPTYDSLRGRGNG 452
Query: 451 GYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
G+ ++ S LL +Q R L++WRD+ AR DEST VL L ++AQ +P D
Sbjct: 453 GWHDMLSNSPVLLTREQFAVFRALHEWRDKTARTDDESTQTVLSKRSLFRIAQEMPVDKF 512
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+ +PV +++ ++ A+I KA+ S T P
Sbjct: 513 AVLQLASPVSASLRSRTEEVAALIAKAKKNSSTGP 547
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R L++WRD+ AR DEST VL L ++AQ +P D + +PV +++
Sbjct: 468 EQFAVFRALHEWRDKTARTDDESTQTVLSKRSLFRIAQEMPVDKFAVLQLASPVSASLRS 527
Query: 632 HVLDIHAIILKARLQPLTKP 651
++ A+I KA+ T P
Sbjct: 528 RTEEVAALIAKAKKNSSTGP 547
>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
Length = 807
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 191/521 (36%), Positives = 279/521 (53%), Gaps = 44/521 (8%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E S+ F L +N KS+V KT + + +PN + + +++ L L
Sbjct: 2 EKSQDFKSLQENVQKSLVSTIKTVNRIAAEDLSFQRTVNPNVGQQLDDRTSRILELSTRL 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L++ + + LE +DI + + D LE +T +D G
Sbjct: 62 LQSTGKACGVKAPKLEDVEDIEMKWRGVVDVVDSSLEKADTALDEYTG------------ 109
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+VK K AS+ Q K KS + N I +PQLQF+ K DN ++P
Sbjct: 110 LVKR---KEPPASDYNQA---KKPKSTTKVIRN---ANISKPQLQFERKPDNFAPPPWKP 160
Query: 191 KLKEKPNAL----KPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSD 246
LK KP+A + L I+L + + HPYE+E+ + + EP P+
Sbjct: 161 ILKAKPHASVSLKESLNIVLNEA-GTPQYQHPYEHEIVRMAYPKRVSREAEPIMYQPVDT 219
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK- 305
T + E V +++ EL + +EIA+DLE+H++RSY G LMQISTR+KD+IVDTL+
Sbjct: 220 TEATYVDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQP 279
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
R LEVLN+V T+ IVKVFHGA DI WLQ+D GLYV G+FDT AC L P +SLA
Sbjct: 280 WRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAKSLA 339
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA---HG 422
YLL + D D+DK +QL DWR RPLP+ + YAR+DTHYLLY+YD ++ +L AA+
Sbjct: 340 YLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDKTDA 399
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFR-SHALLNNQQKYALRELY 474
++L+ SR +YE P ++EE G+ + IF+ SH +++Q R L+
Sbjct: 400 DKDLIGRALEKSREQSLSRYEHPDYDEETGEGSRGWSSYIFKNSHMAFDSEQFSVFRALW 459
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
KWRD AR +DEST +VL N + ++A+ P D + + +
Sbjct: 460 KWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLL 500
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 622
+++Q R L+KWRD AR +DEST +VL N + ++A+ P D + + +
Sbjct: 448 DSEQFSVFRALWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLL 500
>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
Length = 824
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 234/406 (57%), Gaps = 18/406 (4%)
Query: 153 KKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPLAILLEKY- 209
KK++A + M + G+ +I +PQLQF VK+DN+ + + F P LK KP+AL L L
Sbjct: 143 KKETAGFPRMYSHGSSKIAKPQLQFDVKLDNADDGRAFRPLLKSKPHALVGLEESLGGSI 202
Query: 210 -DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
D + + HPYE E++ + EP P++D+ + + E V ++S+LKQ
Sbjct: 203 EDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKAIFVETLEDVHAMLSQLKQA 262
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFH 327
+EIA+DLE+H+ Y G CLMQISTR++D+IVDTLK R+ L+VLNEV D +I+KV H
Sbjct: 263 EEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLH 322
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
G+ D+ WLQ+D GLY+VG+FDT A L +P++SL +LL Y D+DK +Q DWR
Sbjct: 323 GSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRI 382
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMK---LDL---SAAAHGKQNLVLSTFTNSRNICKLK 441
RPL + YAR+DTH+LLY++D ++ LDL S G + + S+ +
Sbjct: 383 RPLLAGMLDYARSDTHFLLYIFDRLRNQLLDLPSESGFGAGGREAIEYVLERSKECALQR 442
Query: 442 YEKPVFNEEGYMNIFRSHALLNN-------QQKYALRELYKWRDRIARDKDESTGYVLPN 494
YE+P ++ H +L+N +Q R L++WRD+ AR DES VL
Sbjct: 443 YERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVFRALHEWRDKTARADDESPQTVLSK 502
Query: 495 HMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
L ++AQ +P D + +PV +++ ++ +I +AR Q
Sbjct: 503 RALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVAGLIREARQQG 548
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+Q R L++WRD+ AR DES VL L ++AQ +P D + +PV ++
Sbjct: 471 TREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASL 530
Query: 630 KEHVLDIHAIILKARLQ 646
+ ++ +I +AR Q
Sbjct: 531 RSRTDEVAGLIREARQQ 547
>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
Length = 796
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 227/390 (58%), Gaps = 14/390 (3%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDL 225
I +PQL+F+ N+ F P L KP+A PL L+ + E + HPY+ E++
Sbjct: 132 IPKPQLKFEHLPTNNETGGFRPLLTSKPHAKIPLEECLKTFKDRRGWEQYPHPYQTEIEQ 191
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
Y + EP+Q P + T ++ PE + +++ELK +EIAIDLE+H+ R+Y G
Sbjct: 192 YEYPSALYETAEPQQYAPFNSTTATLVDTPEALAAMLAELKTAKEIAIDLEHHDNRTYIG 251
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
CLMQISTRDKD+IVDTLK R LE LNEV D +I+KV HGA DI WLQ+D GLY+
Sbjct: 252 MVCLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFMDIIWLQRDLGLYI 311
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT A + L SLAYLL+ + + + K +QL DWR RPL + +YAR DTH+
Sbjct: 312 VGLFDTFHAARALGYQAASLAYLLELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHF 371
Query: 405 LLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------YMN 454
LLY++D M+ +L S ++ ++N V NS+ +YE P+++ E Y
Sbjct: 372 LLYIFDNMRNELVNKSDFSNPEKNKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKL 431
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
I R+ A +Q R +++WRD + R +DES +++PNH + +A+ +P + G+F
Sbjct: 432 ISRTPAQFTREQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNA 491
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
V + H ++ ++++A+ + + P
Sbjct: 492 IQHVGHITRAHADELVGVVVEAKERGASGP 521
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPV 625
P +Q R +++WRD + R +DES +++PNH + +A+ +P + G+F V
Sbjct: 436 PAQFTREQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHV 495
Query: 626 PQTVKEHVLDIHAIILKARLQPLTKPV--EKLQPSLDGMKKKKQQQQVSP 673
+ H ++ ++++A+ + + P E LQ D + ++ + + +P
Sbjct: 496 GHITRAHADELVGVVVEAKERGASGPELHEVLQAIADMQRAERVESETAP 545
>gi|295659299|ref|XP_002790208.1| exosome component 3'-5' exonuclease [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 827
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 175/547 (31%), Positives = 287/547 (52%), Gaps = 36/547 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E+++ F + A ++VK ++A S N + + V S ++++L +S+
Sbjct: 2 EIAEDFASHEEQAKTALVKTVRSATQVSSQDLNFHRSLNKDISESVDEQSARLLSLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
LK + L + D+ + + D+LLE + +D G
Sbjct: 62 LKVATSGSGLRIPELHNEDDLEDNWRSIVDVIDELLEKADACLDEFTGV----------- 110
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYEQLF 188
I K S ++ +++ V +K+ + F + + G +I +PQL F + +N+ F
Sbjct: 111 IKKLSPSQEQRSAAV------SKRPATAQFPSVYDFGPSKISKPQLLFISRPNNNDTSPF 164
Query: 189 EPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
+P L+ KP+A+ PL+ L + I + HPYE E+ + P +
Sbjct: 165 KPLLRSKPHAITPLSESLGETGPNGTITFYKHPYETEIRNSPYPQSIYSISPPVEYKSFD 224
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
T + E V +++ELK+ EIAIDLE+H+ SY G CLMQISTR++D+IVDTLK
Sbjct: 225 ATTATFVDTLEGVHSMLAELKEATEIAIDLEHHDVHSYHGLVCLMQISTREQDWIVDTLK 284
Query: 306 -LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
RE+L+VLNEV TD I+KV HG+ DI WLQ+D GLY+VG+FDT+ L P++SL
Sbjct: 285 PWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDTYHGSVALNYPKRSL 344
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
+LL+ + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ L +
Sbjct: 345 KFLLEKFVNFKAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVENSTPAH 404
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWR 477
NLV SR +YE+PV+N E G+ ++ R+ L + +Q + +++WR
Sbjct: 405 NLVDYVLEKSRQEALQRYERPVYNAETGEGGGGWHDMLIRNSTLFSREQFAVFKAVHQWR 464
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D++AR +DE Y+L L ++A ++P D + +PV V+ + ++ +I +A+
Sbjct: 465 DKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLLRTISPVSPPVRARMSELVQVIKEAK 524
Query: 538 LQSLTKP 544
L T P
Sbjct: 525 LAGATGP 531
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+ +Q + +++WRD++AR +DE Y+L L ++A ++P D + +PV V
Sbjct: 450 SREQFAVFKAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLLRTISPVSPPV 509
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
+ + ++ +I +A+L T P
Sbjct: 510 RARMSELVQVIKEAKLAGATGP 531
>gi|342880534|gb|EGU81622.1| hypothetical protein FOXB_07858 [Fusarium oxysporum Fo5176]
Length = 860
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 191/524 (36%), Positives = 278/524 (53%), Gaps = 43/524 (8%)
Query: 14 ANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLV 73
AN E S+ F L ++ KS++ KT + + +P+ + + +++ L
Sbjct: 22 ANMEQSQDFKSLQESVQKSLISTIKTVNRIAAEDLSFQRTVNPSVGQLLEDRTSRILELS 81
Query: 74 DSLLKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPS 127
LL T + + LE +DI + + D LE +T +D G V
Sbjct: 82 TRLLLTAGKACGVKAPKLEDVEDIEMKWRGVVDVVDSSLEKADTALDEYTGL----VKRK 137
Query: 128 QPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQL 187
+P + + NK+ K KS N + N + +PQL F+ K DN
Sbjct: 138 EPPLPDPA-NKS------------KKPKSTNKVIRN---ANMTKPQLLFERKPDNFAPAP 181
Query: 188 FEPKLKEKPNA---LKPLAILLEKYDAIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALP 243
++P L KPNA L+ ++ + HPYE+E+ + PK F K EP P
Sbjct: 182 WKPMLTSKPNAKLSLEESLKVVPNEAGTPQYQHPYEHEIVRMSYPKRVF-KESEPIMYQP 240
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
+ T + E V +++ ELK +EIAIDLE+H++RSY G LMQISTR+KD+IVDT
Sbjct: 241 VETTEATFVDTYEGVLEMLEELKGAKEIAIDLEHHDFRSYVGLVSLMQISTREKDWIVDT 300
Query: 304 LK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
L+ R LEVLN+V TD N+VKVFHGA D+ WLQ+D GLYV G+FDT AC+ L P +
Sbjct: 301 LQPWRHKLEVLNQVFTDPNVVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACEQLHYPAK 360
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
SLAYLL + D D+DK +QL DWR RPLPE + YAR+DTHYLLY+YD ++ +L AA+
Sbjct: 361 SLAYLLSKFVDFDADKQYQLADWRIRPLPEEMMYYARSDTHYLLYIYDRVRNELVAASDR 420
Query: 423 ---KQNLVLSTFTNSRNICKLKYEKPVFNEEG-------YMNIFR-SHALLNNQQKYALR 471
++ + S+ +YE P ++EE Y IF+ SH +++Q R
Sbjct: 421 GDVDKDYIGRAVEKSKEQSLSRYEHPGYDEETGEGSRGWYGYIFKNSHLAFDSEQFAVFR 480
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
L+KWRD AR +DEST YVL + ++A+ P D + + +
Sbjct: 481 ALWKWRDNTARKEDESTNYVLSTRDITEIARINPPDAKALHSLL 524
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 622
+++Q R L+KWRD AR +DEST YVL + ++A+ P D + + +
Sbjct: 472 DSEQFAVFRALWKWRDNTARKEDESTNYVLSTRDITEIARINPPDAKALHSLL 524
>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
Length = 882
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 178/511 (34%), Positives = 277/511 (54%), Gaps = 44/511 (8%)
Query: 55 SPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDI------LTEANDKLLES 108
+PN + + +++ L SLLK+ ++ LE D+ + + D +LE
Sbjct: 40 NPNIGEDLDAKTTRILELSTSLLKSAADVCGLNAPELEDADDVDMRWRSIVDIVDSVLEK 99
Query: 109 INTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVE 168
+T ID G K+A A++ +KK ++ +
Sbjct: 100 ADTSIDEYTGALK---------------RKDAPATDA---TPQSKKPKTTGTVIR--SAN 139
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA---ILLEKYDAIESFCHPYEYE-LD 224
I +PQL F VDN+ ++P + EKP+A PL + E D + HPYE E L+
Sbjct: 140 ITKPQLHFTRIVDNN--TTWKPIITEKPHATVPLEKSLVTSETDDGFIQYKHPYETEILE 197
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
P + + E P P+ T + E V +++ +LK+ EIA+DLE+H++R+Y
Sbjct: 198 AKYPDRVYEQAE-PIPWQPVETTEATYVDTYEGVLEMLEDLKKANEIAVDLEHHDFRTYV 256
Query: 285 GYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G T LMQISTR+KD+IVDTLK RE L+VLNEV D +I+KVFHGA D+ WLQ+D GLY
Sbjct: 257 GLTSLMQISTREKDWIVDTLKPWREQLQVLNEVFADPSIIKVFHGAFMDMVWLQRDLGLY 316
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
V G+FDT AC+ L P++SLA+LLK + + D+DK +QL DWR RPL E + YAR+DTH
Sbjct: 317 VNGLFDTGMACEVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTH 376
Query: 404 YLLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN------EEGYMN 454
YLLY+YD M+ +L S + + + +T S+ + +Y F+ +G+ N
Sbjct: 377 YLLYIYDKMRNELVMKSDRGNPSTDYIEATLQKSKTLSLSRYGGETFDPKTGKGNKGWYN 436
Query: 455 IFRSHALLNNQQKYAL-RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
H + + Q++A+ R ++ WRD +AR +DEST +V+PN ++ +A+ +P D + + A
Sbjct: 437 TLLRHPMPFSGQQFAVYRAIWAWRDEVARREDESTPFVMPNAIIGDIAKHMPPDAKALHA 496
Query: 514 CCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+ +V +I +AR Q + +P
Sbjct: 497 LIPNHAFIARRNVTEIWKRYQEAREQGINEP 527
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 529 IHAIILKARLQSLTK-PVEKLQPSLD-GMKKKQQQQVSPPHDSNNQQKYALRELYKWRDR 586
I A + K++ SL++ E P G K + P + QQ R ++ WRD
Sbjct: 403 IEATLQKSKTLSLSRYGGETFDPKTGKGNKGWYNTLLRHPMPFSGQQFAVYRAIWAWRDE 462
Query: 587 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 646
+AR +DEST +V+PN ++ +A+ +P D + + A + +V +I +AR Q
Sbjct: 463 VARREDESTPFVMPNAIIGDIAKHMPPDAKALHALIPNHAFIARRNVTEIWKRYQEAREQ 522
Query: 647 PLTKP 651
+ +P
Sbjct: 523 GINEP 527
>gi|363750290|ref|XP_003645362.1| hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888996|gb|AET38545.1| Hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
Length = 747
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/386 (39%), Positives = 228/386 (59%), Gaps = 24/386 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL----AILLEKYDAIESFCHPYEYELD 224
I +PQLQFK+ VDNS F+P LK KP+ALKPL ++ +E + HPYEYE+D
Sbjct: 131 IVKPQLQFKIPVDNSECHPFKPLLKVKPHALKPLEEVSSLTVETECVPAHYPHPYEYEID 190
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L +EP + + + + + +++ LK +EIA+DLE+H+YRSY
Sbjct: 191 NQPYDDSVLTIKEPIEPSNWDENEPIWVDNITALNDMLNGLKNVKEIAVDLEHHDYRSYY 250
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR+ D++VDT+ LR+DL+VLNE+ TD +I+KVFHGA DI WLQ+D GLYV
Sbjct: 251 GLVCLMQISTRESDWLVDTIALRQDLQVLNEIFTDPSILKVFHGAFMDIIWLQRDLGLYV 310
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT+ A + L P+ SLAYLL+ + + + K +QL DWR RPL +P YAR DTH+
Sbjct: 311 VSLFDTYHASRALGFPKHSLAYLLETFANFKTSKKYQLADWRIRPLSKPMKTYARADTHF 370
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------KPVFNEE 450
LL +YD ++ L K++ + SRN+ K ++E P+ ++
Sbjct: 371 LLNIYDKLRNSLI-----KEDKLSGVLHASRNVAKRRFEYTSFRPKVLSPTVFSPIEKDD 425
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + + + ++ +R+LYKWRD +AR DES YV+PN +L+ + P D G
Sbjct: 426 PWRTLMSQYNVPDIKEPL-MRKLYKWRDMVARKDDESVRYVMPNQLLVSLVTLAPSDPSG 484
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKA 536
+ + +P V+ + + II K
Sbjct: 485 LLTVKSYIPDHVRANARVLCNIINKT 510
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
+R+LYKWRD +AR DES YV+PN +L+ + P D G+ + +P V+ + +
Sbjct: 444 MRKLYKWRDMVARKDDESVRYVMPNQLLVSLVTLAPSDPSGLLTVKSYIPDHVRANARVL 503
Query: 637 HAIILKA 643
II K
Sbjct: 504 CNIINKT 510
>gi|407923871|gb|EKG16934.1| hypothetical protein MPH_05915 [Macrophomina phaseolina MS6]
Length = 817
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 182/546 (33%), Positives = 287/546 (52%), Gaps = 46/546 (8%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKT 79
+ F VQ+A +V+ T++A S + P+ + + + ++++L + LL +
Sbjct: 5 QAFQKTVQHA---LVQTTRSATSLCAEDLRFHRSLDPSLGTALDRENARLLSLAERLLGS 61
Query: 80 QNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVK 133
+ LE Q + + + D LLE +T +D G + PS+
Sbjct: 62 AAAGSEVVGPKLEDQDAVDASWRSVVDVVDSLLERADTSLDEFTGI-VKRLTPSK----- 115
Query: 134 ESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK 193
+ + A + K + N F N+ ++ +PQ+ F+ N ++P +
Sbjct: 116 ----EQSPAPAL-------KPRGGNSFR-NQ---DLPKPQVLFEHVPKNDETGPWKPLIT 160
Query: 194 EKPNALKPLAILLEKYD---AIESFCHPYEYELDLY-VPKEDFLKCEEPKQALPLSDTPL 249
KP+A PL L Y I+ + HPY+ E++ Y P + K + P LP T
Sbjct: 161 SKPHATVPLEQSLITYTDETGIQHYQHPYQKEIEDYQYPSSVYTKAD-PIPYLPFESTTA 219
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRE 308
+ PE + ++++ELK +EIAIDLE+H+ R+Y G CLMQISTR+KD+IVDTLK R
Sbjct: 220 TFVDTPEALDEMLAELKSAKEIAIDLEHHDTRTYIGIVCLMQISTRNKDWIVDTLKPWRR 279
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
L+ LNEV TD +I+KV HGA D WLQ+D GLY+VG+FDTH A + L SLA+LL
Sbjct: 280 RLQALNEVFTDPHILKVLHGAYMDAIWLQRDLGLYLVGLFDTHHAARALGYSGGSLAFLL 339
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAAAHGKQN 425
+ + ++ K +Q DWR RPLP+ YAR+DTH+LLY+YD M+ +D S+ +Q+
Sbjct: 340 QKFIHFNAQKQYQTADWRMRPLPQELFDYARSDTHFLLYIYDNMRNELVDKSSFDDPEQD 399
Query: 426 LVLSTFTNSRNICKLKYEKPVFN-EEG------YMNIFRSHALLNNQQKYALRELYKWRD 478
VL S+ YE P+++ +EG Y ++R+ N +Q + +++WRD
Sbjct: 400 RVLRVLEKSKETALQTYENPIYDAKEGSGPMGWYKALYRNPNAFNKEQFSVFKAVHQWRD 459
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
+AR +DEST YV+ NH L +A+SIP D +F P+ V+ ++ II +A+
Sbjct: 460 TVARQEDESTHYVMANHALFSVARSIPLDKAALFNVAQPISPIVRLRADELVGIITRAKE 519
Query: 539 QSLTKP 544
P
Sbjct: 520 AGADGP 525
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPV 625
P+ N +Q + +++WRD +AR +DEST YV+ NH L +A+SIP D +F P+
Sbjct: 440 PNAFNKEQFSVFKAVHQWRDTVARQEDESTHYVMANHALFSVARSIPLDKAALFNVAQPI 499
Query: 626 PQTVKEHVLDIHAIILKAR 644
V+ ++ II +A+
Sbjct: 500 SPIVRLRADELVGIITRAK 518
>gi|451855365|gb|EMD68657.1| hypothetical protein COCSADRAFT_157073 [Cochliobolus sativus
ND90Pr]
Length = 791
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 222/390 (56%), Gaps = 14/390 (3%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDL 225
I +PQLQF+ N F P KP+A PL L+ + E + HPY+ E++
Sbjct: 132 IPKPQLQFEHVPTNDETGGFRPLATSKPHAKIPLEECLKTFRDKRGREQYPHPYQTEIEE 191
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
Y + + EP+Q P T ++ PE + ++SELK +EIA+DLE+H+ RSY G
Sbjct: 192 YEYPANVYEYAEPQQYKPFESTTATLVDTPEALATMLSELKTAKEIAVDLEHHDNRSYIG 251
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
LMQISTRDKD+IVDTLK R LE LNEV D +I+KV HGA DI WLQ+D GLY+
Sbjct: 252 MVSLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYI 311
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A + L P SLAYLL+ + + K +QL DWR RPL +YAR DTH+
Sbjct: 312 VGLFDTYHAARALGYPGASLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHF 371
Query: 405 LLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------YMN 454
LLY+YD M+ +L S ++ +N V S+ +YE P+++ E Y
Sbjct: 372 LLYIYDNMRNELVEKSDFSNPDKNKVHDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKL 431
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
I R+ +Q R +++WRD + R +DES +++PNH + +A+++P D +F
Sbjct: 432 ISRTPVQFTPEQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNA 491
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
V ++ H ++ ++++A+ + L P
Sbjct: 492 IQHVSHIIRSHAEELVGVVVEAKKEGLHGP 521
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R +++WRD + R +DES +++PNH + +A+++P D +F V ++
Sbjct: 442 EQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHVSHIIRS 501
Query: 632 HVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSP 673
H ++ ++++A+ + L P +L +L ++ + ++ P
Sbjct: 502 HAEELVGVVVEAKKEGLHGP--ELHTTLQTIEDMLKAERAGP 541
>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
Length = 1069
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 155/411 (37%), Positives = 233/411 (56%), Gaps = 23/411 (5%)
Query: 153 KKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPLAILLEKY- 209
KK++A + M + G+ +I +PQLQF VK+DN+ + + F P LK KP+AL L L
Sbjct: 330 KKETAGFPRMYSHGSSKIAKPQLQFDVKLDNADDGRAFRPLLKSKPHALVGLEESLGGSI 389
Query: 210 -DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
D + + HPYE E++ + EP P++D+ + + E V ++S+LKQ
Sbjct: 390 QDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKAIFVETLEDVHAMLSQLKQA 449
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFH 327
+EIA+DLE+H+ Y G CLMQISTR++D+IVDTLK R+ L+VLNEV D +I+KV H
Sbjct: 450 KEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLH 509
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
G+ D+ WLQ+D GLY+VG+FDT A L +P++SL +LL Y D+DK +Q DWR
Sbjct: 510 GSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRI 569
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMKLDL-----------SAAAHGKQNLVLSTFTNSRN 436
RPL + YAR+DTH+LLY++D ++ L S G + + S+
Sbjct: 570 RPLLAGMLDYARSDTHFLLYIFDRLRNQLLELPPSSEEKESGPGGGGREAIEYVLERSKE 629
Query: 437 ICKLKYEKPVFNEEGYMNIFRSHALLNN-------QQKYALRELYKWRDRIARDKDESTG 489
+YE+P ++ H +L+N +Q R L++WRDRIAR DES
Sbjct: 630 CALQRYERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVFRALHEWRDRIARADDESPQ 689
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
VL L ++AQ +P D + +PV +++ ++ +I +AR Q
Sbjct: 690 TVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVAGLIREARQQG 740
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R L++WRDRIAR DES VL L ++AQ +P D + +PV +++
Sbjct: 665 EQFAVFRALHEWRDRIARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRS 724
Query: 632 HVLDIHAIILKARLQ 646
++ +I +AR Q
Sbjct: 725 RTDEVAGLIREARQQ 739
>gi|452004410|gb|EMD96866.1| hypothetical protein COCHEDRAFT_1085740 [Cochliobolus
heterostrophus C5]
Length = 792
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 221/390 (56%), Gaps = 14/390 (3%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDL 225
I +PQLQF+ N F P + KP+A PL L+ + E + HPY+ E++
Sbjct: 132 IPKPQLQFEHVPTNDETGGFRPLVTSKPHAKIPLEECLKTFRDKRGREQYPHPYQTEIEE 191
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
Y + EP+Q P T ++ PE + ++SELK +EIA+DLE+H+ RSY G
Sbjct: 192 YEYPPSVYEYAEPQQYKPFESTTATLVDTPEALATMLSELKTAKEIAVDLEHHDNRSYIG 251
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
LMQISTRDKD+IVDTLK R LE LNEV D +I+KV HGA DI WLQ+D GLY+
Sbjct: 252 MVSLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYI 311
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A + L P SLAYLL+ + + K +QL DWR RPL +YAR DTH+
Sbjct: 312 VGLFDTYHAARALGYPGASLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHF 371
Query: 405 LLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------YMN 454
LLY+YD M+ +L S + +N V S+ +YE P+++ E Y
Sbjct: 372 LLYIYDNMRNELIEKSDFSDPDKNKVQDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKL 431
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
I R+ +Q R +++WRD + R +DES +++PNH + +A+++P D +F
Sbjct: 432 ISRTPVQFTPEQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNA 491
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
V ++ H ++ ++++A+ + L P
Sbjct: 492 IQHVSHIIRSHAEELVGVVVEAKKEGLHGP 521
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 46/80 (57%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R +++WRD + R +DES +++PNH + +A+++P D +F V ++
Sbjct: 442 EQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHVSHIIRS 501
Query: 632 HVLDIHAIILKARLQPLTKP 651
H ++ ++++A+ + L P
Sbjct: 502 HAEELVGVVVEAKKEGLHGP 521
>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 881
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 161/385 (41%), Positives = 229/385 (59%), Gaps = 22/385 (5%)
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEKYDAIESFC----------- 216
E+PQ FK +DNS E F P +KEK NA PL I+ + + ESF
Sbjct: 150 EKPQNHFKDCIDNSIEHPFIPVIKEKLNADVPLDDVIVQVQREGAESFFKTIQDPLQYEF 209
Query: 217 -HPYEYELDLYVPKEDFLKCEEPKQALPLS-DTPLMMITEPEQVTQLVSELKQQQEIAID 274
HPY YE++ + E L+ + P+S L+ + + + + +++ LKQ E+AID
Sbjct: 210 PHPYAYEIENFNFSEQQLQTDNIIVQEPISLKEELVFVDKEDILDEMIESLKQCSEVAID 269
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
LE+H+YRS+ G TCLMQIS+R KDYIVD + + L LN V TDKNIVKV HGAD DI+
Sbjct: 270 LEHHSYRSFNGITCLMQISSRTKDYIVDVFSVWKSLHKLNAVTTDKNIVKVLHGADMDIQ 329
Query: 335 WLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
WLQ+DFG+Y+V +FDT QA + L MP +LAYLL+ V +DK +QL DWR RPLP
Sbjct: 330 WLQRDFGIYIVNLFDTGQAARTLSMPSYALAYLLQSISKVPTDKKYQLADWRIRPLPREM 389
Query: 395 IQYARTDTHYLLYVYDCMKLDL-SAAAHGKQN---LVLSTFTNSRNICKLKYEKPVFNEE 450
I YAR+DTHYLL +YD +++ L S A QN + S SR IC KY KP+ ++E
Sbjct: 390 ISYARSDTHYLLSIYDNLRIQLVSKALQQGQNASHFIESVLNKSRAICLKKYVKPILDDE 449
Query: 451 GYMNIFRSHALLNNQQKY-ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
Y +I ++ ++ + +K+ L+ L +WR ++A DE+ +VL N +L + +P+ Q
Sbjct: 450 KYHSILQNQRIILSDRKFRILKRLLEWRYKMAAKYDENPTFVLANDILFNIVNRLPQ-TQ 508
Query: 510 GIFACCN-PVPQTVKEHVLDIHAII 533
FA N + + H +I +II
Sbjct: 509 KEFASSNLKLSYVCQYHANEILSII 533
>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans CBS 6340]
Length = 735
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 166/428 (38%), Positives = 246/428 (57%), Gaps = 38/428 (8%)
Query: 162 LNKGAVE-IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL----AILLEKYDAIESFC 216
L+ GA + I +PQL FK +DNS F+P LK+KP+AL+ L + E+ D +
Sbjct: 123 LHDGAPKKILKPQLLFKRPIDNSESHPFKPLLKKKPHALRSLDESLRLTAEQEDVPAHYP 182
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
PYEYE+D E L+ EP +LP +T + + + +++EL EIAIDLE
Sbjct: 183 QPYEYEIDHQEYNESVLQISEPVPSLPWDETEAEWVDNTDALKLMLNELLLANEIAIDLE 242
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
+H+YR+Y G TCLMQISTR+KD+++DT+ LR+DL +LNEV TD I KV HGA DI WL
Sbjct: 243 HHDYRTYYGITCLMQISTREKDWLIDTIALRDDLWILNEVFTDPKITKVLHGAFMDIIWL 302
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+D GLY+V +FDT+ A + L P+ SLAYLL+ Y + K +QL DWR RPLP+
Sbjct: 303 QRDLGLYIVSLFDTYHASRLLGSPKHSLAYLLERYAHFKTSKKYQLSDWRVRPLPKALKA 362
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE------------- 443
YAR DTH+LL +YD M+ L +QN + +SRN+ K ++E
Sbjct: 363 YARADTHFLLNIYDNMRNSLI-----EQNKLSQVLHDSRNVAKRRFEFTTFRPKIVTSHV 417
Query: 444 -KPVFNEEGY------MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
P+ E+ + NI +S +LL +R LY+WRD +AR DES YV+PN +
Sbjct: 418 FSPIEREDPWRTLMFQYNIPQSKSLL-------VRRLYEWRDMVARRDDESPRYVIPNQL 470
Query: 497 LLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMK 556
L+ +A + P I A V + ++++ + A+++K L+S + +L S + ++
Sbjct: 471 LVSLAVNAPTTPALIMATSTFVTEHIRQNAKSL-ALLIKKSLESSSNEFGQLLNSANTVQ 529
Query: 557 KKQQQQVS 564
++S
Sbjct: 530 NSSPTKMS 537
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
+R LY+WRD +AR DES YV+PN +L+ +A + P I A V + ++++ +
Sbjct: 444 VRRLYEWRDMVARRDDESPRYVIPNQLLVSLAVNAPTTPALIMATSTFVTEHIRQNAKSL 503
Query: 637 HAIILKARLQ 646
A+++K L+
Sbjct: 504 -ALLIKKSLE 512
>gi|408396401|gb|EKJ75559.1| hypothetical protein FPSE_04202 [Fusarium pseudograminearum CS3096]
Length = 1034
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 190/519 (36%), Positives = 278/519 (53%), Gaps = 42/519 (8%)
Query: 14 ANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLV 73
A E S+ F L ++ KS+V TKT + + +PN + + +++ L
Sbjct: 226 ATMEKSQDFKSLQESVQKSLVSTTKTVNRIAAEDLSFQRTVNPNVGQQLDDRTSRILELS 285
Query: 74 DSLLKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPS 127
LL++ + + LE +DI + + D LE +T +D G
Sbjct: 286 TRLLQSTGKACGVKAPKLEDVEDIEMKWRGVVDVVDSSLEKADTALDEYTG--------- 336
Query: 128 QPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQL 187
+VK K AS+ Q K KS + N I +PQLQF+ K DN
Sbjct: 337 ---LVKR---KEPPASDSNQA---KKPKSTTKVIRN---ANISKPQLQFERKPDNFAPPP 384
Query: 188 FEPKLKEKPNA---LKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPL 244
++P LK KP+A LK ++ + HPYE+E+ + + EP P+
Sbjct: 385 WKPILKAKPHASVSLKESLNIVPNEAGTPQYQHPYEHEIVRMAYPKRVSREAEPIMYQPV 444
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
T + E V +++ EL + +EIA+DLE+H++RSY G LMQISTR+KD+IVDTL
Sbjct: 445 DTTEATYVDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTL 504
Query: 305 K-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
+ R LEVLN+V T+ IVKVFHGA DI WLQ+D GLYV G+FDT AC L P +S
Sbjct: 505 QPWRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAKS 564
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA--- 420
LAYLL + D D+DK +QL DWR RPLP+ + YAR+DTHYLLY+YD ++ +L AA+
Sbjct: 565 LAYLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDKT 624
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMN-IFR-SHALLNNQQKYALRE 472
++L+ SR +YE P +++E G+ + IF+ SH +++Q R
Sbjct: 625 DADKDLIGRALEKSREQSLSRYEHPDYDQETGEGSRGWSSYIFKNSHMAFDSEQFSVFRA 684
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
L+KWRD AR +DEST +VL N + ++A+ P D + +
Sbjct: 685 LWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKAL 723
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 618
+++Q R L+KWRD AR +DEST +VL N + ++A+ P D + +
Sbjct: 675 DSEQFSVFRALWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKAL 723
>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
Length = 805
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 154/413 (37%), Positives = 232/413 (56%), Gaps = 15/413 (3%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDL 225
I +PQL F+ N F P + KP+A PL L+ + E + HPYE E++
Sbjct: 149 IAKPQLLFEHVPANHQTGGFRPLMSTKPHAQVPLEQCLKTFQDSRGREQYPHPYETEINS 208
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
Y + EP P T + PE V ++++ELK +EIA+DLE+H+ RSY G
Sbjct: 209 YDYPPSVYEISEPTPYQPFDSTTATYVDTPEAVAEMLAELKTAKEIAVDLEHHDNRSYIG 268
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
LMQISTRDKD+IVDTLK R LE LNEV D NI+KV HGA DI WLQ+D GLY+
Sbjct: 269 MVSLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPNILKVLHGAYMDIMWLQRDLGLYI 328
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDTH A + L P SLAYLL+ + + K +QL DWR RPL + +YAR DTH+
Sbjct: 329 VGLFDTHHAARSLGYPGGSLAYLLERHVQFKAQKQYQLADWRIRPLGKELFEYARADTHF 388
Query: 405 LLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN------- 454
LLY++D M+ +L S + ++N V S+ + +YE PV++ + +
Sbjct: 389 LLYIFDNMRNELVERSDFSDPEKNKVQDVLIKSKEVALQRYEHPVYDAKLGLGSAGWHKL 448
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
I R+ QQ R +++WRD ++R +DES +++PNH + +A+++P D +F
Sbjct: 449 IMRTPVQFTPQQFSVFRAVHQWRDSLSRKEDESPLFIMPNHAVFSVARAMPVDKAALFNA 508
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTKP-VEKLQPSLDGMKKKQQQQVSPP 566
V ++ ++ ++I +A+ +T P + + +++ MK+ + Q P
Sbjct: 509 IQHVSHIIRGKADELVSVITEAKASGVTGPELNDVLKTIEDMKEARYAQFETP 561
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ R +++WRD ++R +DES +++PNH + +A+++P D +F V ++
Sbjct: 459 QQFSVFRAVHQWRDSLSRKEDESPLFIMPNHAVFSVARAMPVDKAALFNAIQHVSHIIRG 518
Query: 632 HVLDIHAIILKARLQPLTKP-VEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPVF 690
++ ++I +A+ +T P + + +++ MK+ + Q +P PPV
Sbjct: 519 KADELVSVITEAKASGVTGPELNDVLKTIEDMKEARYAQFETP--------KKTAAPPVA 570
Query: 691 PN 692
P+
Sbjct: 571 PS 572
>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
Length = 744
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 222/379 (58%), Gaps = 24/379 (6%)
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHP 218
NK + IE+PQL FK VDN+ F+P L+ KP++L+P I L+ ES + HP
Sbjct: 123 NKPSKRIEKPQLSFKTPVDNTELHPFKPLLEYKPHSLQPFEISLKMVPEEESIPSHYPHP 182
Query: 219 YEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
YEYE+D + L EP + +T + + E + ++ EL + E+AIDLE+H
Sbjct: 183 YEYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKATELAIDLEHH 242
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
+YRSY G CLMQIS R+ D+IVDT+ LRE+L +LN++ TD N+ KV HGA DI WLQ+
Sbjct: 243 DYRSYYGIVCLMQISDREHDWIVDTIALREELYILNDIFTDPNVTKVLHGAFMDIIWLQR 302
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
D GLY+VG+FDT+ A + L P+ SLAYLL+ + + + K +QL DWR RPL +P + YA
Sbjct: 303 DLGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLAYA 362
Query: 399 RTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------K 444
R DTH+LL ++D ++ L +QN + SR + K ++E
Sbjct: 363 RADTHFLLNIFDKLRNSL-----LEQNKMSDVLHESRKVAKRRFEYSSFRPKVPSSAVFS 417
Query: 445 PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
P+ +E + NI + + +++ LR LY+WRD IAR DES YV+PN +L+ +
Sbjct: 418 PIEKDEPWKNIMFQYNIPASKE-LLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGA 476
Query: 505 PRDIQGIFACCNPVPQTVK 523
P + + + + V + ++
Sbjct: 477 PTEPINVLSVSSYVSEHLR 495
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 630
LR LY+WRD IAR DES YV+PN +L+ + P + + + + V + ++
Sbjct: 442 LRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGAPTEPINVLSVSSYVSEHLR 495
>gi|410081706|ref|XP_003958432.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
gi|372465020|emb|CCF59297.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
Length = 735
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 225/393 (57%), Gaps = 28/393 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL----AILLEKYDAIESFCHPYEYELD 224
I +PQL+F +DNS F P LKEKPNALK + ++ + E + HPYEYE+D
Sbjct: 129 INKPQLKFVPPIDNSESHPFIPLLKEKPNALKTIDESTKLINSDENVPEHYAHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ EP + S+T + + E + +++++K+ EIAIDLE+H+YR+Y
Sbjct: 189 NQPYNDSILQVREPIPSKSWSETEGVWVDNVESLNHMLNDIKKYTEIAIDLEHHDYRTYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR+ DY+VDT+ LR DL+VLNEV TD ++VKV HGA DI WLQ+D GLY+
Sbjct: 249 GIVCLMQISTRETDYLVDTIALRNDLKVLNEVFTDPSVVKVLHGAFMDIIWLQRDLGLYI 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT A + L PR SLAYLL+ + + + K +QL DWR RPL + YAR DTH+
Sbjct: 309 VSLFDTFHASRALGFPRHSLAYLLEEFANFKTSKKYQLADWRVRPLSKAMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN--------------EE 450
LL +YD ++ L + N ++ SRN+ K ++E F E+
Sbjct: 369 LLNIYDQLRNRLV-----ETNKLVGVLNESRNVAKRRFEYSKFRPRVPSPNVYSALEKED 423
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + + + ++ L+ L++WRD IAR DES Y++PN +++ + P D G
Sbjct: 424 PWRTLMFQYNIPSEREDL-LKGLFEWRDMIARRDDESPRYIMPNQLMVTLVAYTPTDPAG 482
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
+ + Q V ++V II +LT+
Sbjct: 483 VISAS----QVVTDYVRSNSKIIANLIKNALTR 511
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
L+ L++WRD IAR DES Y++PN +++ + P D G+ + V V+ + I
Sbjct: 442 LKGLFEWRDMIARRDDESPRYIMPNQLMVTLVAYTPTDPAGVISASQVVTDYVRSNSKII 501
Query: 637 HAIILKA 643
+I A
Sbjct: 502 ANLIKNA 508
>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 786
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/418 (39%), Positives = 235/418 (56%), Gaps = 34/418 (8%)
Query: 148 EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE 207
E DN K S + N+ A +IE+PQL+FKV +DNS F+PKL KP+AL P L
Sbjct: 121 EYLDNGKTSTTTTISNEKASKIEKPQLKFKVPIDNSESGPFKPKLSSKPHALVPFNDSLI 180
Query: 208 K-----YDAIE-----SFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQ 257
D+IE + PYEYE+D + L +P S T + + E+
Sbjct: 181 NPEPVYEDSIEIIDPPFYAQPYEYEIDNQPYPDAILAKSDPIPPKDWSSTKAIWVDTVEE 240
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ ++V ELK+ EIA+DLE+H+YRSY G CLMQIS R++D+I+DTL LR+DL VLNEV
Sbjct: 241 LQKMVQELKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLALRDDLTVLNEVF 300
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD 377
D +IVKVFHGA DI WLQ+D GLYVV +FDT A + L PR SLAYLL+ Y +
Sbjct: 301 ADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALGFPRFSLAYLLEVYAHFKTS 360
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNI 437
K +QL DWR RPL P + YAR+DTH+LL++YD +K L A Q L +SR +
Sbjct: 361 KQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKLSQVLY-----DSRQV 415
Query: 438 CKLKYE----KPV--------------FNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
K ++E +P+ FN + S + + ++ + LYKWRD
Sbjct: 416 AKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDL 475
Query: 480 IARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
+A+ +DES Y++PN +L+ +A P D+ + + V+ + ++ +I K
Sbjct: 476 MAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKELANLIEKT 533
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHA 638
LYKWRD +A+ +DES Y++PN +L+ +A P D+ + + V+ + ++
Sbjct: 469 LYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKELAN 528
Query: 639 IILKA 643
+I K
Sbjct: 529 LIEKT 533
>gi|327308500|ref|XP_003238941.1| exosome component 3'-5' exonuclease [Trichophyton rubrum CBS
118892]
gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
Length = 867
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/418 (36%), Positives = 232/418 (55%), Gaps = 26/418 (6%)
Query: 149 VHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPLAIL 205
V + +KK F M + G+ +I +PQLQF VK+DN+ + + F P LK KP+AL L
Sbjct: 138 VQEAQKKETAGFPRMYSHGSSKIAKPQLQFDVKLDNADDGRAFRPLLKSKPHALVGLEES 197
Query: 206 LEKY--DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVS 263
L D + + HPYE E++ + EP P++D+ + + E V ++S
Sbjct: 198 LGGSFQDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKAIFVETLEDVHAMLS 257
Query: 264 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNI 322
+LKQ +EIA+DLE+H+ Y G CLMQISTR++D+IVDTLK R+ L+VLNEV D +I
Sbjct: 258 QLKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSI 317
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 382
+KV HG+ D+ WLQ+D GLY+VG+FDT A L +P++SL +LL Y D+DK +Q
Sbjct: 318 IKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFDADKQYQT 377
Query: 383 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-------------SAAAHGKQNLVLS 429
DWR RPL + YAR+DTH+LLY++D ++ L S G + +
Sbjct: 378 ADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLESPSSSPEEKQESGLGGGGREAIEY 437
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNN-------QQKYALRELYKWRDRIAR 482
S+ +YE+P ++ H +L+N +Q R L++WRD+ AR
Sbjct: 438 VLERSKECALQRYERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVFRALHEWRDKTAR 497
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
DES VL L ++AQ +P D + +PV +++ ++ +I +AR Q
Sbjct: 498 ADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVAGLIREARQQG 555
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R L++WRD+ AR DES VL L ++AQ +P D + +PV +++
Sbjct: 480 EQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRS 539
Query: 632 HVLDIHAIILKARLQ 646
++ +I +AR Q
Sbjct: 540 RTDEVAGLIREARQQ 554
>gi|389740502|gb|EIM81693.1| hypothetical protein STEHIDRAFT_171972 [Stereum hirsutum FP-91666
SS1]
Length = 910
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 179/564 (31%), Positives = 271/564 (48%), Gaps = 94/564 (16%)
Query: 57 NYISGVAGTSDKVMTLVDSLLKTQNIS------KSMSKLYLEGQKDI-------LTEAND 103
++ + + SD+ ++LV+ LL + + K K LE Q D+ + E+ D
Sbjct: 50 DFANNLDACSDRALSLVNRLLSLASTADSSRSGKGKGKARLEDQDDLVDRFESTIVESMD 109
Query: 104 KLLESINTRIDVMAG-TKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFML 162
+LLE + +D +G TK P++ A A V H
Sbjct: 110 QLLERADISLDQFSGRTKAPAIAVKP-PPPVPKRTALAPAPVVQHAAH------------ 156
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD-----AIESFCH 217
+ +PQL+FK K N+ ++ P+L+ K NA PL D AI H
Sbjct: 157 ------LPKPQLKFKRKPVNTNGAVWYPQLRHKYNAQVPLGFNFNPNDPESEKAIPP--H 208
Query: 218 PYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEY 277
PY +E+ + + P ++TP ++ ++ +L+ QEIA+DLEY
Sbjct: 209 PYRHEITNITYPSRMFETQSPITPKSFAETPFTWVSTSIDFATMLDKLRNAQEIAVDLEY 268
Query: 278 HNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 337
H+YR++ G+ CLMQIS+R++D+IVD +LR+++E LNEV TD IVK+FHGA+SD+ WLQ
Sbjct: 269 HSYRTFGGFVCLMQISSREEDWIVDPFELRDEMEDLNEVFTDPKIVKIFHGAESDVAWLQ 328
Query: 338 KDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQY 397
+DF LY+V +FDT A K L PR LA LL+ YCD +DK +QL DWR RPLP+ ++Y
Sbjct: 329 QDFNLYIVNLFDTFHASKVLDFPRHGLASLLEMYCDFTADKRYQLADWRVRPLPQEMLEY 388
Query: 398 ARTDTHYLLYVYDCMKLDL----------------------------------SAAAHGK 423
AR+DTH+LLY+YD ++ L + G
Sbjct: 389 ARSDTHFLLYIYDNLRNALLDRFLSRSQSRAQSPQSSSTPPPPSTINPSSTVTALIPPGP 448
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL---------RELY 474
V + S YE+ ++ EG + K AL RE+Y
Sbjct: 449 DGYVREVLSRSAETSLRVYEREYYDVEGGSGPGGWDTMAKKWNKVALVADGPGGVQREVY 508
Query: 475 K----WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH---VL 527
+ WRDR AR++DES YVL NH + Q+A+ P D+ + + VP ++ +L
Sbjct: 509 RAVHAWRDRTAREEDESVRYVLANHFVFQLAERPPNDMAALLHMFHSVPPVIRRRAKELL 568
Query: 528 DIHAIILKARLQSLT----KPVEK 547
D + LK L + T P+E+
Sbjct: 569 DCIRVALKRGLSATTPQTPAPIEQ 592
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 553 DGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
D M KK + Q+ R ++ WRDR AR++DES YVL NH + Q+A+ P
Sbjct: 484 DTMAKKWNKVALVADGPGGVQREVYRAVHAWRDRTAREEDESVRYVLANHFVFQLAERPP 543
Query: 613 RDIQGIFACCNPVPQTVKEH---VLDIHAIILKARLQPLT----KPVEK 654
D+ + + VP ++ +LD + LK L T P+E+
Sbjct: 544 NDMAALLHMFHSVPPVIRRRAKELLDCIRVALKRGLSATTPQTPAPIEQ 592
>gi|367017047|ref|XP_003683022.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
gi|359750685|emb|CCE93811.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
Length = 735
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 155/395 (39%), Positives = 236/395 (59%), Gaps = 23/395 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL-AILLEKYDAI-ESFCHPYEYELDLY 226
I +PQL FK V+N+ Q F P LKEKP AL+PL + ++ DA+ E + PYEYE++
Sbjct: 129 ISKPQLNFKNPVNNTEIQPFVPLLKEKPFALRPLISDIVPGNDAVPEHYAQPYEYEIEHQ 188
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
E + EP + P T + + E + ++S+LK EIA+DLE+H+YRSY G
Sbjct: 189 EYGESVIVKSEPIPSKPWETTEALWVDNIEVLKTMISDLKSVTEIAVDLEHHDYRSYYGI 248
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 346
CLMQISTR++DY++DT+ LR+DL++LNEV + I+KVFHGA DI WLQ+D GLYVV
Sbjct: 249 VCLMQISTRERDYLIDTIALRDDLQILNEVFANPKILKVFHGAFMDIIWLQRDLGLYVVS 308
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+FDT A + + +PR SLAYLL+ + + + K +QL DWR RPL + YAR DTH+LL
Sbjct: 309 LFDTFHASRAIGLPRHSLAYLLEKFANFKTSKKYQLADWRLRPLSKAMNAYARADTHFLL 368
Query: 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK--------------PVFNEEGY 452
+YD ++ L +QN + SRN+ K ++E P+ + +
Sbjct: 369 NIYDQLRNTLI-----EQNKLAGVLAESRNVAKRRFEYSKFRPIAPSPTVYCPIDKPDPW 423
Query: 453 MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
+ +++ N+++ +++LY WRD IAR DES YV+PN +L+++A+ P + +
Sbjct: 424 KVLMFQYSISPNREEL-VKKLYDWRDTIARRDDESPRYVMPNQLLVELARQAPTEPINVI 482
Query: 513 ACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEK 547
+ + V V+ + L + A ++K L S K +K
Sbjct: 483 SVNSIVTDHVRSNSL-VLAHLIKNTLASSDKESDK 516
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
+++LY WRD IAR DES YV+PN +L+++A+ P + + + + V V+ + L +
Sbjct: 440 VKKLYDWRDTIARRDDESPRYVMPNQLLVELARQAPTEPINVISVNSIVTDHVRSNSLVL 499
Query: 637 HAII 640
+I
Sbjct: 500 AHLI 503
>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
ARSEF 23]
Length = 830
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 176/534 (32%), Positives = 275/534 (51%), Gaps = 47/534 (8%)
Query: 31 KSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLY 90
KS+V K+ + + L +P+ + S +++ L LL++ + +
Sbjct: 16 KSLVSTVKSVNRLAAEDLSFLRTVNPDVAGQLDDRSARILHLSTRLLQSAAKACGVKAPR 75
Query: 91 LEGQKDI------LTEANDKLLESINTRIDVMAG---TKTPSVLPSQPKIVKESWNKNAK 141
LE +DI + + D +LE +T +D G K P + PK
Sbjct: 76 LEDAEDIDMSWPSIEDIVDSVLEKADTAVDEYTGLIKRKEPPSADTGPKA---------- 125
Query: 142 ASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKP 201
+ + + N I +PQ F+ K DN ++P L KP+A
Sbjct: 126 ----------KRPRPTGKLVRN---ANITKPQAMFEKKPDNFPTGPWKPILANKPHATVS 172
Query: 202 LAILL---EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQV 258
L L D + HPYE E+ E + +P + P+ T + E V
Sbjct: 173 LEQSLFTAPGEDGTAQYKHPYETEISTMKYPEWVFQKHDPIPSQPIDSTKATWVDTYEGV 232
Query: 259 TQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVL 317
+++ EL++ +EIA+DLE+H++R+Y G CLMQ+STRD+D+IVDTL+ R LEVLN+V
Sbjct: 233 LEMLEELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDRDWIVDTLQPWRHKLEVLNDVF 292
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD 377
D ++VKVFHGA D+ WLQ+D GLYV G+FDT+ AC L P +SLA+LL + D+D
Sbjct: 293 ADPSVVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACNLLNYPGRSLAFLLSKFVGFDAD 352
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---KQNLVLSTFTNS 434
K +QL DWR RP+PE + YAR+DTHYLLY+YD ++ +L A+ +++ + S
Sbjct: 353 KQYQLADWRIRPIPEDMLYYARSDTHYLLYIYDNVRNELIEASDKSDPEKDYINQALERS 412
Query: 435 RNICKLKYEKPVFNE------EGYMN-IFR-SHALLNNQQKYALRELYKWRDRIARDKDE 486
R + ++E P +NE G+ N +F+ SH LN +Q + L+KWRD AR +DE
Sbjct: 413 RELALSRHENPDYNETTGEGARGWYNYVFKHSHLALNGEQFSIFKALWKWRDETARQEDE 472
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
S +VL + ++A+ P D++ + + + K + DI A I +A+ Q
Sbjct: 473 SPNFVLGPTNVTEIARVNPPDVKALHSLLPLTARLAKARLNDIWARIQEAKTQG 526
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q + L+KWRD AR +DES +VL + ++A+ P D++ + + +
Sbjct: 449 NGEQFSIFKALWKWRDETARQEDESPNFVLGPTNVTEIARVNPPDVKALHSLLPLTARLA 508
Query: 630 KEHVLDIHAIILKARLQ 646
K + DI A I +A+ Q
Sbjct: 509 KARLNDIWARIQEAKTQ 525
>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 854
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 202/619 (32%), Positives = 306/619 (49%), Gaps = 77/619 (12%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFP---STHENSLLIASPNYISGVAGTSDKVMTLVDS 75
S +FDV S +K T++A P + H + P + V S +V+ L +
Sbjct: 9 SSSFDVFNSQLQASALKATRSAVGLPVDIAFHRS----IDPAFAKDVDAFSSRVLLLTNK 64
Query: 76 LLKTQNI------SKSMSKLYLEGQKDIL-------TEANDKLLESINTRIDVMAGTKTP 122
LL + SK K L+ Q D++ ++ D+LLE + +D G P
Sbjct: 65 LLNFVSTADESQRSKGKGKAKLQNQDDVVDNFHSLVVDSMDQLLERTDICLDEFLGRHKP 124
Query: 123 SVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDN 182
+ P I K + + + D + A+ + +PQ++FK K DN
Sbjct: 125 PAIAINPPIGKTEKPRKEPKQHTSRGYLDPALQHAS---------HLPKPQVKFKRKPDN 175
Query: 183 SYEQLFEPKLKEKPNALKPLAILLEKY--DAIESFCHPYEYELD-LYVPKEDFLKCEEPK 239
S + + P + K NA PL + D + HPY YE+ L P F C P+
Sbjct: 176 S-DAPWYPTISHKFNAKVPLGHVYHDVGSDGVVG-NHPYRYEISHLSYPPYLFKSCT-PQ 232
Query: 240 QALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDY 299
Q L +T + I+ P+++ ++++LK+ EIA+DLE+H+YRSY G+ CLMQIS R+ D+
Sbjct: 233 QPPSLEETSAIWISTPDELQAMLAKLKKATEIAVDLEHHSYRSYTGFLCLMQISDRENDW 292
Query: 300 IVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM 359
IVD L LR+++E LNE+ TD IVKV HGA+SD+ WLQ+DF +Y+V +FDT A K L
Sbjct: 293 IVDLLALRDEIEQLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLFDTFHASKLLDF 352
Query: 360 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDL 416
PR LA LL+ YCD DK +QL DWR RPLP+ + YAR+DTH+LL++YD ++ LD
Sbjct: 353 PRHGLANLLEMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFIYDNLRNALLDR 412
Query: 417 SAA--------------AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI----FRS 458
S + A Q L S T+ R K Y+ + G + +
Sbjct: 413 SRSRSSSPSSSSQKPQHALLTQVLTRSAETSLRVYVKEPYDAADGSGPGGWDTLAKKWNK 472
Query: 459 HALLNNQQKYAL----RELY----KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
AL+ + RE+Y WR+R+AR++DEST Y +PN L Q+A+ P D+
Sbjct: 473 GALMAGGPGVGIGAMQREVYVRVHGWRERVAREEDESTRYTMPNQYLFQLAEQPPADMAA 532
Query: 511 IFACC-NPVPQTVKEHVLDIHAIILKARLQSL-TKPVEKL--QPSLDG---------MKK 557
+ + VP V+ ++ +I + + L K V K+ +PS G K+
Sbjct: 533 LLGVFKSSVPALVRRRAKELLEVIREGVKRGLEGKQVAKVEEEPSKTGSEVVAPDAASKE 592
Query: 558 KQQQQVSPPHDSNNQQKYA 576
K PP S++Q +
Sbjct: 593 KMDVDSVPPQASSSQSFWG 611
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 578 RELY----KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC-NPVPQTVKEH 632
RE+Y WR+R+AR++DEST Y +PN L Q+A+ P D+ + + VP V+
Sbjct: 489 REVYVRVHGWRERVAREEDESTRYTMPNQYLFQLAEQPPADMAALLGVFKSSVPALVRRR 548
Query: 633 VLDIHAIILKARLQPL-TKPVEKL--QPSLDG---------MKKKKQQQQVSPPHDSMDC 680
++ +I + + L K V K+ +PS G K+K V P S
Sbjct: 549 AKELLEVIREGVKRGLEGKQVAKVEEEPSKTGSEVVAPDAASKEKMDVDSVPPQASSSQS 608
Query: 681 LNYKGLPPVFPNNIICAPSNTHLSSYDPQDK 711
KG P ++ AP ++ S P +
Sbjct: 609 FWGKGQPSTSSTSVPLAPKSSLFGSTIPTSR 639
>gi|303310683|ref|XP_003065353.1| exosome component 3'-5' exonuclease [Coccidioides posadasii C735
delta SOWgp]
gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 766
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 171/546 (31%), Positives = 280/546 (51%), Gaps = 34/546 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
+L+ F + ++V+ TKT + +P+ + + S + + L +S+
Sbjct: 2 DLATEFSPFQEKLTAALVQATKTTSQLLAQDIAFQRSVNPSLSNSLDEQSARFLGLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L+ ++ LE + + + + D+LLE + +D G + PSQ
Sbjct: 62 LRFATSGSDLNAPSLEDEDGVDDNWRGVVDVIDELLEKADACLDEFTGI-IKKLGPSQ-- 118
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
QE++ K+ N + +I +PQL FK + +N F P
Sbjct: 119 ------------DERGQELNKRASKAQFPGAYNFASSKIPKPQLSFKTRPNNHASSPFRP 166
Query: 191 KLKEKPNALKPLAILLEKYDA---IESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSD 246
L++KP+AL PL + E+ +E HPY +E+ D + P + P+ P
Sbjct: 167 ILRQKPHALIPLPPVAEQTSTNGDVEQSEHPYAHEIKDCHYPASTY-SSSTPQLYKPFES 225
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL-K 305
T + E V ++ ELK +EIA+DLE+H+ SY G CLMQISTR+KD+IVDTL
Sbjct: 226 TTATFVNTIEGVKVMLEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLP 285
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
RE+L++LNEV D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++SL
Sbjct: 286 WREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNYPKKSLK 345
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
+LL + +++++K +Q DWR RPL YAR+DTHYLLY+YD ++ +L + N
Sbjct: 346 FLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEKSTPDTN 405
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWRD 478
L+ S+ +YE+PV++ E G+ ++ RS +LLN +Q + +++WRD
Sbjct: 406 LIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSRSPSLLNREQLAVFKAVHRWRD 465
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
+ AR DE VL L +A +P D G+ PV ++++ + ++ +I A+
Sbjct: 466 QTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIPVSPSLRKRLSELLKVIKDAKA 525
Query: 539 QSLTKP 544
+ P
Sbjct: 526 SGVDGP 531
Score = 46.6 bits (109), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q + +++WRD+ AR DE VL L +A +P D G+ PV ++
Sbjct: 450 NREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIPVSPSL 509
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
++ + ++ +I A+ + P
Sbjct: 510 RKRLSELLKVIKDAKASGVDGP 531
>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
Silveira]
Length = 772
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 173/548 (31%), Positives = 282/548 (51%), Gaps = 38/548 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
+L+ F + ++V+ TKT + +P+ + + S + + L +S+
Sbjct: 2 DLATEFSPFQEKLTAALVQATKTTSQLLAQDIAFQRSVNPSLSNSLDEQSARFLGLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L+ ++ LE + + + + D+LLE + +D G + PSQ +
Sbjct: 62 LRFATSGSDLNAPSLEDEDGVDDNWRGVVDVIDELLEKADACLDEFTGI-IKKLGPSQDE 120
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYEQLF 188
+E NK+ S F N + +I +PQL FK + +N F
Sbjct: 121 RGQEL----------------NKRASKAQFPGAYNFASSKIPKPQLSFKTRPNNHASSPF 164
Query: 189 EPKLKEKPNALKPLAILLEKYDA---IESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPL 244
P L++KP+AL PL + E+ +E HPY +E+ D + P + P+ P
Sbjct: 165 RPILRQKPHALIPLPPVAEQTSTNGDVEQSEHPYAHEIKDCHYPASTY-SSSTPQLYKPF 223
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
T + E V ++ ELK +EIA+DLE+H+ SY G CLMQISTR+KD+IVDTL
Sbjct: 224 ESTTATFVNTIEGVKVMLEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTL 283
Query: 305 -KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
RE+L++LNEV D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++S
Sbjct: 284 LPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNYPKKS 343
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
L +LL + +++++K +Q DWR RPL YAR+DTHYLLY+YD ++ +L +
Sbjct: 344 LKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEKSTPD 403
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKW 476
NL+ S+ +YE+PV++ E G+ ++ RS +LLN +Q + +++W
Sbjct: 404 TNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSRSPSLLNREQLAVFKAVHRW 463
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RD+ AR DE VL L +A +P D G+ PV ++++ + ++ +I A
Sbjct: 464 RDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIPVSPSLRKRLSELLKVIKDA 523
Query: 537 RLQSLTKP 544
+ + P
Sbjct: 524 KASGVDGP 531
Score = 47.0 bits (110), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q + +++WRD+ AR DE VL L +A +P D G+ PV ++
Sbjct: 450 NREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIPVSPSL 509
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
++ + ++ +I A+ + P
Sbjct: 510 RKRLSELLKVIKDAKASGVDGP 531
>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
Length = 881
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 232/412 (56%), Gaps = 24/412 (5%)
Query: 153 KKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPLAILLEKY- 209
KK++A + M + G+ +I +PQLQF VK+DN+ + + F P LK KP+AL L L
Sbjct: 146 KKETAGFPRMYSHGSSKIAKPQLQFDVKLDNADDGRAFRPLLKSKPHALVGLEESLGGSI 205
Query: 210 -DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
D + + HPYE E++ + EP P++D+ + + E V ++S+LKQ
Sbjct: 206 QDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKAIFVETLEDVHAMLSQLKQA 265
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFH 327
+EIA+DLE+H+ Y G CLMQISTR++D+IVDTLK R+ L+VLNEV D +I+KV H
Sbjct: 266 KEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLH 325
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
G+ D+ WLQ+D GLY+VG+FDT A L +P++SL +LL Y D+DK +Q DWR
Sbjct: 326 GSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRI 385
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMKLDL------------SAAAHGKQNLVLSTFTNSR 435
RPL + YAR+DTH+LLY++D ++ L S G + + S+
Sbjct: 386 RPLLAGMLDYARSDTHFLLYIFDRLRNQLLELLPSSSEEKESGPGGGGREAIEYVLERSK 445
Query: 436 NICKLKYEKPVFNEEGYMNIFRSHALLNN-------QQKYALRELYKWRDRIARDKDEST 488
+YE+P ++ H +L+N +Q R L++WRD+ AR DES
Sbjct: 446 ECALQRYERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVFRALHEWRDKTARADDESP 505
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
VL L ++AQ +P D + +PV +++ ++ +I +AR Q
Sbjct: 506 QTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVAGLIREARQQG 557
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R L++WRD+ AR DES VL L ++AQ +P D + +PV +++
Sbjct: 482 EQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRS 541
Query: 632 HVLDIHAIILKARLQ 646
++ +I +AR Q
Sbjct: 542 RTDEVAGLIREARQQ 556
>gi|396483292|ref|XP_003841672.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
Length = 783
Score = 278 bits (712), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 223/390 (57%), Gaps = 14/390 (3%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY---DAIESFCHPYEYELDL 225
I +PQLQF+ N F P + KP+A PL L+ + E + HPY+ E++
Sbjct: 132 IPKPQLQFEYVPTNDESGGFRPLVTAKPHAKIPLEKCLQTFKDKHGREQYPHPYQTEIET 191
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
Y K EP++ P T + + PE + +++ELK +EIA+DLE+H+ RSY G
Sbjct: 192 YEYPPSLYKHAEPQRYEPFESTTAIFVDTPEALASMLAELKTAKEIAVDLEHHDNRSYIG 251
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
LMQISTR++D+IVDTLK R LE LNEV + +I+KV HGA DI WLQ+D GLYV
Sbjct: 252 IVSLMQISTRNQDWIVDTLKPWRRKLECLNEVFANPDIIKVLHGAYMDIMWLQRDLGLYV 311
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A + L P SLAYLL + + K +Q+ DWR RPL + +YAR DTH+
Sbjct: 312 VGLFDTYHAARSLGYPGASLAYLLDRFIGFKAQKQYQIADWRIRPLGKELFEYARADTHF 371
Query: 405 LLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE-------GYMN 454
LLY++D M+ +L S ++ ++N V S+ +YE PV++E+ Y
Sbjct: 372 LLYIFDNMRNELVEKSDLSNVEKNKVRDVLEKSKETALQRYEHPVYDEKFGLGTGGWYKL 431
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
I R+ QQ R +++WRD ++R +DES +++PNH + +A+++P D ++
Sbjct: 432 ISRTPVQFTPQQFAVFRAVHQWRDELSRQEDESPLFIMPNHAVFSVARAMPSDKSALYNA 491
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
V ++ D+ +I KA+ + + P
Sbjct: 492 VQHVSHIIRARADDLVRVITKAKQEGVNGP 521
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ R +++WRD ++R +DES +++PNH + +A+++P D ++ V ++
Sbjct: 442 QQFAVFRAVHQWRDELSRQEDESPLFIMPNHAVFSVARAMPSDKSALYNAVQHVSHIIRA 501
Query: 632 HVLDIHAIILKARLQPLTKP 651
D+ +I KA+ + + P
Sbjct: 502 RADDLVRVITKAKQEGVNGP 521
>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 785
Score = 278 bits (712), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 168/421 (39%), Positives = 238/421 (56%), Gaps = 40/421 (9%)
Query: 148 EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE 207
E DN K S + N+ A +IE+PQL+FKV +DNS F+PKL KP+AL P L
Sbjct: 121 EYLDNGKTSTTTTISNEKASKIEKPQLKFKVPIDNSESGPFKPKLSSKPHALVPFNDSLI 180
Query: 208 K-----YDAIE-----SFCHPYEYELDLYVPKEDFLKCEEPKQALP---LSDTPLMMITE 254
D+IE + PYEYE+D P D + + A+P S T + +
Sbjct: 181 NPEPVYEDSIEIIDPPFYAQPYEYEID-NQPYPDAILAKS--DAIPPKDWSTTKAIWVDT 237
Query: 255 PEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLN 314
E++ ++V ELK+ EIA+DLE+H+YRSY G CLMQIS R++D+I+DTL LR+DL VLN
Sbjct: 238 VEELQKMVQELKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLALRDDLTVLN 297
Query: 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV 374
EV D +IVKVFHGA DI WLQ+D GLYVV +FDT A + L PR SLAYLL+ Y
Sbjct: 298 EVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALGFPRFSLAYLLEVYAHF 357
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
+ K +QL DWR RPL P + YAR+DTH+LL++YD +K L A Q L +S
Sbjct: 358 KTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKLSQVLY-----DS 412
Query: 435 RNICKLKYE----KPV--------------FNEEGYMNIFRSHALLNNQQKYALRELYKW 476
R + K ++E +P+ FN + S + + ++ + LYKW
Sbjct: 413 RQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKW 472
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
RD +A+ +DES Y++PN +L+ +A P D+ + + V+ + ++ +I K
Sbjct: 473 RDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKELANLIEK 532
Query: 536 A 536
Sbjct: 533 T 533
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHA 638
LYKWRD +A+ +DES Y++PN +L+ +A P D+ + + V+ + ++
Sbjct: 469 LYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKELAN 528
Query: 639 IILKA 643
+I K
Sbjct: 529 LIEKT 533
>gi|354544046|emb|CCE40768.1| hypothetical protein CPAR2_108030 [Candida parapsilosis]
Length = 771
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 183/539 (33%), Positives = 275/539 (51%), Gaps = 68/539 (12%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISK 84
L +N +++ + A + + N PN + ++T+ + LL+T +
Sbjct: 8 LFKNVLPNLMGTIRAATALAAQDVNFYKSVDPNISEEIDKRGRNLLTITNDLLRTASSQT 67
Query: 85 SMSKLYLEGQKDILTEAN----DKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNA 140
+ GQ++I +E++ +++SI +ID K
Sbjct: 68 NPVDPIRFGQENISSESSWNPVSNVIDSIFEKIDYTFDQIN---------------RKQT 112
Query: 141 KASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALK 200
Q + D N + N A +E+PQ +FKV VDNS ++ F+PK+ KPNAL+
Sbjct: 113 GGGEQKQYLED-----GNSLISNDQAQRVEKPQSKFKVSVDNSEQEPFKPKITGKPNALQ 167
Query: 201 PL---------AILLEKYDAIES-----FCHPYEYELDLYVPKEDFLKCEEPKQALPLSD 246
P A + E D+IE + HPYEYE+D + L +P S
Sbjct: 168 PWESVNKLTNPAPVYE--DSIEVVDPPFYAHPYEYEIDTQPYPKSILSKSDPVPPKDWSS 225
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
T + + E + +++ EL+Q EIA+DLE+H+YRSY G CLMQIS R+KD+I+DTL L
Sbjct: 226 TSAIWVDTTEGLNKMIDELQQSTEIAVDLEHHDYRSYYGIVCLMQISNREKDWIIDTLVL 285
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
R+DL VLN+V TD I+KV HGA DI WLQ+D GLY+V +FDT+ A + L + SL Y
Sbjct: 286 RDDLSVLNKVFTDPKIIKVLHGAFMDIIWLQRDLGLYIVSLFDTYHASRQLGFSKFSLQY 345
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LL + + K +QL DWR RPLP+P + YAR+DTH+LLY++D ++ L + Q L
Sbjct: 346 LLDTFAHFRTSKKYQLADWRIRPLPKPMLAYARSDTHFLLYIFDQLRNKLIDSDKLAQVL 405
Query: 427 VLSTFTNSRNICKLKYE----KPVFNEEG--------YMNIFRSHALLNNQ------QKY 468
+SR + K ++E +P+ N G N L Q ++
Sbjct: 406 F-----DSRQVAKRRFEYTKFRPLSNNLGSKVSCPVMAANPKEPWGSLMYQYNVPAFKRP 460
Query: 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHV 526
+ +LYKWRD IAR +DES Y++PN +L+ +A P D+ + VP V EHV
Sbjct: 461 VVEQLYKWRDLIARKEDESVRYIMPNQLLVSLATLESPVDVGKVLN----VPSYVSEHV 515
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHV 633
+ +LYKWRD IAR +DES Y++PN +L+ +A P D+ + VP V EHV
Sbjct: 461 VVEQLYKWRDLIARKEDESVRYIMPNQLLVSLATLESPVDVGKVLN----VPSYVSEHV 515
>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
Length = 737
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/363 (42%), Positives = 214/363 (58%), Gaps = 24/363 (6%)
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA----ILLEKYDAIESFCHP 218
N + I +PQL FK VDNS F+P L EKPNALK + ++L D E F P
Sbjct: 123 NDPSRRISKPQLNFKTPVDNSESHPFKPLLIEKPNALKSIEESTQLVLATEDIPEHFQQP 182
Query: 219 YEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
YEYE+ D L+ +EP + DT + + + ++ ELK+ EIA+DLE+H
Sbjct: 183 YEYEILNQEYNNDILEKKEPIPSTSWVDTNAIWVDNINSLQDMMQELKKSSEIAVDLEHH 242
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
++RSY G CLMQISTR +DYIVDT+ LR+DL++LNEV T+ I KVFHGA DI WLQ+
Sbjct: 243 DFRSYYGLVCLMQISTRTQDYIVDTIALRDDLKMLNEVFTNPLITKVFHGAFMDIIWLQR 302
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
D GLY+V +FDT A K L +P+ SLAYLL+ Y + + K +QL DWR RPL + + YA
Sbjct: 303 DLGLYIVSLFDTFHASKALGLPKHSLAYLLEKYANFKTSKKYQLADWRRRPLSKAMMAYA 362
Query: 399 RTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------K 444
R DTH+LL ++D M+ L ++ GK VL SRN+ ++E
Sbjct: 363 RADTHFLLNIFDQMRNGLISS--GKLAGVLR---ESRNVALRRFEYSKYKPKIPVANIFT 417
Query: 445 PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
PV E + + + + +++ +RELY+WRD +AR DES YV+PN +L+ +
Sbjct: 418 PVEKESPWRTLMYQYNIPVDKEPL-IRELYEWRDMMARRDDESPRYVMPNQLLVSLVAYG 476
Query: 505 PRD 507
P D
Sbjct: 477 PVD 479
Score = 46.6 bits (109), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 614
+RELY+WRD +AR DES YV+PN +L+ + P D
Sbjct: 442 IRELYEWRDMMARRDDESPRYVMPNQLLVSLVAYGPVD 479
>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 786
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/421 (39%), Positives = 238/421 (56%), Gaps = 40/421 (9%)
Query: 148 EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE 207
E DN K S + N+ A +IE+PQL+FKV +DNS F+PKL KP+AL P L
Sbjct: 121 EYLDNGKTSTTTTISNEKASKIEKPQLKFKVPIDNSESGPFKPKLSSKPHALVPFNDSLI 180
Query: 208 K-----YDAIE-----SFCHPYEYELDLYVPKEDFLKCEEPKQALP---LSDTPLMMITE 254
D+IE + PYEYE+D P D + + A+P S T + +
Sbjct: 181 NPEPVYEDSIEIIDPPFYAQPYEYEID-NQPYPDAILAKS--DAIPPKDWSTTKAIWVDT 237
Query: 255 PEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLN 314
E++ ++V ELK+ EIA+DLE+H+YRSY G CLMQIS R++D+I+DTL LR+DL VLN
Sbjct: 238 VEELQKMVQELKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLALRDDLTVLN 297
Query: 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV 374
EV D +IVKVFHGA DI WLQ+D GLYVV +FDT A + L PR SLAYLL+ Y
Sbjct: 298 EVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALGFPRFSLAYLLEVYAHF 357
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
+ K +QL DWR RPL P + YAR+DTH+LL++YD +K L A Q L +S
Sbjct: 358 KTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKLSQVLY-----DS 412
Query: 435 RNICKLKYE----KPV--------------FNEEGYMNIFRSHALLNNQQKYALRELYKW 476
R + K ++E +P+ FN + S + + ++ + LYKW
Sbjct: 413 RQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKW 472
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
RD +A+ +DES Y++PN +L+ +A P D+ + + V+ + ++ +I K
Sbjct: 473 RDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKELANLIEK 532
Query: 536 A 536
Sbjct: 533 T 533
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHA 638
LYKWRD +A+ +DES Y++PN +L+ +A P D+ + + V+ + ++
Sbjct: 469 LYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKELAN 528
Query: 639 IILKA 643
+I K
Sbjct: 529 LIEKT 533
>gi|389640871|ref|XP_003718068.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
gi|351640621|gb|EHA48484.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
Length = 828
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 234/393 (59%), Gaps = 20/393 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD---AIESFCHPYEYELDL 225
I +PQ F+V N + ++P L +KP+A+ PL L +D A + HPYE E+
Sbjct: 148 IIKPQKAFEVPPKNHDKGPWKPLLTKKPHAIVPLDKSLATFDNEDAETQYKHPYETEILQ 207
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
E + +P P++ + + E V +++ +LKQ +EIA+DLE+H++R+Y G
Sbjct: 208 SRHPESVYQKRDPIPYTPIAKSSPTYVDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHG 267
Query: 286 YTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
LMQISTR+KD+IVDTLK R+ LE+LNEV D +IVKVFHGA DI WLQ+D GLYV
Sbjct: 268 LLSLMQISTREKDWIVDTLKPWRQQLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYV 327
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT A + L P +SLAYLLK + D ++DK +Q DWR RPLPE + YAR+DTHY
Sbjct: 328 VGLFDTFHAAEALMYPSKSLAYLLKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHY 387
Query: 405 LLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE------GYMN- 454
LLYVYD M+ +L S + ++L+ T S++ +YE + E G+ N
Sbjct: 388 LLYVYDMMRNELLRQSVSGDPHRDLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNL 447
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGI 511
I R + +Q R L+KWRD +AR +DES +++ N +L+ +A+++P D++ +
Sbjct: 448 IHRLPNTFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLVDIARAMPETANDLRRL 507
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
F P + + ++D +I +R + T P
Sbjct: 508 FTNVGPPVRNAVDELVD---LIQDSRQKGATGP 537
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACC 622
P+ + +Q R L+KWRD +AR +DES +++ N +L+ +A+++P D++ +F
Sbjct: 452 PNTFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNV 511
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTKP 651
P + + ++D +I +R + T P
Sbjct: 512 GPPVRNAVDELVD---LIQDSRQKGATGP 537
>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 186/503 (36%), Positives = 271/503 (53%), Gaps = 57/503 (11%)
Query: 65 TSDKVMTLVDSLLKTQNIS--KSMSKLYLEGQKDILTEAN--DKLLESINTRIDVMAGTK 120
TSD++ L D +L+ + S K S L +KD +N D + E + D + T+
Sbjct: 48 TSDRLKRLADEMLQLVSSSERKPNSSESLVFRKDWKGYSNKLDNIFEVVEHMFDRL-NTQ 106
Query: 121 TPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKV 180
P++ + + +S EVHD ++AN ++ I +PQ FK K+
Sbjct: 107 DPTIEAKENMLHLDS------------EVHD--MEAANALARSR----IIKPQQFFKTKI 148
Query: 181 DNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES--------FCHPYEYELDLYVPKEDF 232
DNS F+PKL KP+ALK ++ F HPYEYE+D E
Sbjct: 149 DNSELAPFKPKLTSKPHALKSFEESCNLRSGADTEFGKDPDYFPHPYEYEIDTLEYPELV 208
Query: 233 LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQI 292
L+ EPK+ + T + + ++Q+VS+L Q EIA+DLE+H+YRSY G CLMQI
Sbjct: 209 LEILEPKKPKDWTSTSAIWVETESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQI 268
Query: 293 STRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQ 352
S+R+KD+I+DTLKLR+ L VLNE+ + NIVKVFHGA DI WLQ+D GLYVV +FDT+
Sbjct: 269 SSREKDWIIDTLKLRDSLVVLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYH 328
Query: 353 ACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412
A K L +PR SLAYLL++Y + + K +QL DWR RPL P + YAR+DTH+LLYVYD +
Sbjct: 329 ASKKLGLPRFSLAYLLENYANFKTSKKYQLADWRMRPLLGPMLSYARSDTHFLLYVYDQL 388
Query: 413 KLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN------------------EEGYMN 454
+ L ++ K VL SR + K ++E F +E Y +
Sbjct: 389 RNQLLSSGSQKMKEVLH---ESRQVAKRRFEFTRFRPTLVSGSKVSCPIMAPNAKEPYSS 445
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA-QSIPRDIQGIFA 513
I L N + + LY WRD A++ DE YV+PN +L+ + ++P D + I
Sbjct: 446 IMNQFN-LPNHTRPIVEALYLWRDAKAKECDELVRYVMPNQLLVNFSLLALPVDKETILR 504
Query: 514 ---CCNPVPQTVKEHVLDIHAII 533
+ V +V E V +++++
Sbjct: 505 NPYITDQVRNSVDELVTLLNSVM 527
>gi|403218486|emb|CCK72976.1| hypothetical protein KNAG_0M01230 [Kazachstania naganishii CBS
8797]
Length = 738
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/509 (33%), Positives = 268/509 (52%), Gaps = 58/509 (11%)
Query: 57 NYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDI------LTEANDKLLESIN 110
N S V ++V+ +++ +L + + SK + E + + T D L E +
Sbjct: 37 NVASSVKELGNEVLEMINDILFSID---ENSKPFAESAEQVGESWRDFTNLTDNLFEKSD 93
Query: 111 TRIDVMA-GTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEI 169
+D++A GT+ KN +A + Q + D ++ I
Sbjct: 94 RSMDIIAQGTR-----------------KNGQAGSEVQYLDDLVGNDSS------SGKRI 130
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELDL 225
+PQL F VDNS Q F+P L EKPNALKPL L+ A E+ + +PY+YE+
Sbjct: 131 TKPQLHFSRPVDNSESQPFKPLLTEKPNALKPLKESLQMVPATENIPSHYPNPYDYEISN 190
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
D L+ P + P ++ + + E + L+ +LK+ +E+AIDLE+H+YRSY G
Sbjct: 191 QEYNNDILETRAPIPSTPWHESEPVWVDSTEGLQSLLKDLKKYKELAIDLEHHDYRSYYG 250
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
CLMQISTRD DY+VDT+ LR++L +LN+V TD + KVFHGA DI WLQ+D GLY+V
Sbjct: 251 IVCLMQISTRDTDYLVDTIALRDELHILNQVFTDPMVTKVFHGAFMDIIWLQRDLGLYIV 310
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT A K L P+ SLAYLL+ + + K +QL DWR RPL +P YAR DTH+L
Sbjct: 311 SLFDTFHASKALGFPKHSLAYLLETLANFKTSKKYQLADWRIRPLSKPMSVYARADTHFL 370
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------KPVFNEEG 451
L ++D M+ L K N + SR + K ++E P+ E
Sbjct: 371 LNIFDQMRNQLI-----KDNKLAGVLGESRKVAKRRFEYSKFRPKLAQPDVFTPIEKESP 425
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ + + + +++ ++ LY+WRD IAR DES Y++PN +L+ ++ P D +
Sbjct: 426 WRTLMFQYNVTPEKEEL-VKALYEWRDTIARRDDESPRYIMPNQLLISLSAYTPTDPVSL 484
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQS 540
+ + V V+ + + A ++K+ ++S
Sbjct: 485 VSVNSYVTDCVRSNS-KVLANLIKSFVES 512
Score = 46.6 bits (109), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
++ LY+WRD IAR DES Y++PN +L+ ++ P D + + + V V+ +
Sbjct: 443 VKALYEWRDTIARRDDESPRYIMPNQLLISLSAYTPTDPVSLVSVNSYVTDCVRSN 498
>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
Length = 838
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/527 (31%), Positives = 270/527 (51%), Gaps = 40/527 (7%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYL 91
++V KT+ + + ++ + + +++++ + + LL + +S L
Sbjct: 26 AVVATVKTSSGLAAEDVDFHRASNSEFGPSLDDCNERILAITNRLLASATCGSGISVPGL 85
Query: 92 EGQKDI------LTEANDKLLESINTRIDVMAGT---KTPSVLPSQPKIVKESWNKNAKA 142
+ D+ + E D LLE +T +D G + P P A+A
Sbjct: 86 KEVDDVENHWTKIVEVIDDLLEKADTCLDEYTGAIKERNPVPFP------------GARA 133
Query: 143 SNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL 202
+ + + +KS + + I +PQL F K+DN ++P+L KP+A+ PL
Sbjct: 134 AGMVPKPSRPSRKSI------QRSANIPKPQLLFNEKIDNFDSAPWKPRLTSKPHAVTPL 187
Query: 203 A---ILLEKYDAIESFCHPYEYELD-LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQV 258
L + I + HPY+ E++ + PKE + EP + + P + P +
Sbjct: 188 GESIYLFKNELGINEYAHPYQAEIESMEYPKEVY-SWMEPIPSRDWDEIPPTWVDTPRAL 246
Query: 259 TQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLT 318
+++ ++++ EIA+DLE+H+ R+Y G TCLMQ+STRD DYIVDTLKLR LE LNE+ T
Sbjct: 247 QEMIKDMRRCTEIAVDLEHHDTRTYIGLTCLMQLSTRDDDYIVDTLKLRGQLEPLNEIFT 306
Query: 319 DKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK 378
+ ++KV HGA DI WLQ+D GLY+VG+FDT A + L R LA++LK Y + D+DK
Sbjct: 307 NPRVIKVLHGAFMDIIWLQRDLGLYIVGLFDTFYAAQALEFARFGLAHILKKYVNFDADK 366
Query: 379 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNIC 438
+Q+ DWR RPLP+ + YAR+DTHYLLY +DCM+ L + G VL S+
Sbjct: 367 QYQMADWRLRPLPKEMLDYARSDTHYLLYCFDCMRNSLVEKSRGDVEHVLQ---KSKETA 423
Query: 439 KLKYEKPVFNEEGYMNIFRSHALL-----NNQQKYALRELYKWRDRIARDKDESTGYVLP 493
+Y + ++ F + + N Q++ + ++ WRD+ AR++DES +V
Sbjct: 424 LRRYIRDTYDAATGEGTFGWASQIIKFKFNRTQEFVFKAVHAWRDQAAREEDESPTFVCS 483
Query: 494 NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
L ++ ++P D G+ C + K + +I I A Q+
Sbjct: 484 RSTLGALSTAMPTDYDGVAKCIHDTNHLAKSRIGEIVEAIKGALEQA 530
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q++ + ++ WRD+ AR++DES +V L ++ ++P D G+ C +
Sbjct: 453 NRTQEFVFKAVHAWRDQAAREEDESPTFVCSRSTLGALSTAMPTDYDGVAKCIHDTNHLA 512
Query: 630 KEHVLDI 636
K + +I
Sbjct: 513 KSRIGEI 519
>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
Length = 741
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 220/388 (56%), Gaps = 22/388 (5%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA----ILLEKYDAIESFCHPYEY 221
A I +PQ++F+ +DN+ F+P L+ KP+AL+PL+ ++ D E + PYEY
Sbjct: 125 AKRILKPQVRFQRPIDNTETHPFKPLLENKPHALRPLSDCVRLVQADEDIPEHYPQPYEY 184
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
E++ E LK EP + P + + + E + ++ +LK+ EIA+DLE+H+YR
Sbjct: 185 EIENQEYNESILKIAEPIPSKPWDGSEPVWVDNKESLDSMLQDLKKSTEIAVDLEHHDYR 244
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
SY G CLMQ+STR DY+VDTL LR+DL VLNEV + IVKVFHGA DI WLQ+D G
Sbjct: 245 SYYGIVCLMQVSTRQTDYLVDTLALRDDLVVLNEVFANPLIVKVFHGAFMDIIWLQRDLG 304
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LY+V +FDT+ A + L PR SLAYLL+ + + K +QL DWR RPL + YAR D
Sbjct: 305 LYIVSLFDTYHASRALGFPRHSLAYLLETFASFKTSKKYQLADWRVRPLSKAMSAYARAD 364
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKL-----KYEKPVFNEEGYMNIF 456
TH+LL +YD ++ L +N + SRN+ K KY V N Y +
Sbjct: 365 THFLLNIYDQLRNKLII-----ENKLAGVLAESRNVAKRSFQYSKYRPKVPNSSVYSPVD 419
Query: 457 RSHA--LLNNQQKYAL------RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
R+ +L NQ L + LY+WRD IAR DES YV+PN +L + P D
Sbjct: 420 RADGWKVLMNQYNIPLEKEILVKNLYEWRDTIARRDDESPRYVMPNQLLAYLVDYTPLDP 479
Query: 509 QGIFACCNPVPQTVKEHVLDIHAIILKA 536
G+ + V V+ + + +I+K+
Sbjct: 480 TGVISVSPTVTDHVRTNAKALANLIVKS 507
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
++ LY+WRD IAR DES YV+PN +L + P D G+ + V V+ + +
Sbjct: 441 VKNLYEWRDTIARRDDESPRYVMPNQLLAYLVDYTPLDPTGVISVSPTVTDHVRTNAKAL 500
Query: 637 HAIILKA 643
+I+K+
Sbjct: 501 ANLIVKS 507
>gi|453081050|gb|EMF09100.1| 3_5_exonuc-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 782
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 160/461 (34%), Positives = 247/461 (53%), Gaps = 37/461 (8%)
Query: 91 LEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVH 150
+EG + + D LLE +T +D G +V P + + NK +++
Sbjct: 80 VEGNWKAVVDVVDSLLERADTALDEFTG----AVKRLSPGVEQTKSNKAGRSA----PQR 131
Query: 151 DNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEK 208
D + I +PQL F N+ F+P L+ KP+A PL A L
Sbjct: 132 DQR---------------IAKPQLLFDHVPTNNDVPPFKPLLETKPHATTPLETAPTLAP 176
Query: 209 YDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
++ PY++E++ Y + +P P T ++ E +++++ ELKQ
Sbjct: 177 GATHPAYAQPYQHEIENYQYPPSIYQWSQPVMYHPFDQTTATLVDTEEALSEMLEELKQA 236
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFH 327
+EIAIDLE+H+ RSY G LMQISTRDKD+IVDTLK R L+ LNEV D I+KV H
Sbjct: 237 KEIAIDLEHHDSRSYIGIVSLMQISTRDKDWIVDTLKPWRRKLQCLNEVFADPGIIKVLH 296
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
GA DI WLQ+D GLY+VG+FDT A L +SLA+LLK + +VD+ K +Q DWR
Sbjct: 297 GAFMDIMWLQRDLGLYIVGLFDTFHAASVLGYTGRSLAFLLKKFANVDAQKQYQTADWRV 356
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA-----HGKQNLVLSTFTNSRNICKLKY 442
RPLP YAR+DTH+LLY++D M+ +L + + + + + S +Y
Sbjct: 357 RPLPTELFDYARSDTHFLLYIFDNMRNELIHRSNLELPNHEGDKIYDVLQRSSEEALQRY 416
Query: 443 EKPVFNEE-----GYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
E PV++ E G+ + R+ A+L +Q R +++WRD +AR++D+S Y++PNH
Sbjct: 417 EYPVYDAELGQGAGWYRLLSRTSAMLTKEQFSVFRAVHQWRDEVAREQDDSVNYIMPNHQ 476
Query: 497 LLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+ +A+++P + P QTV+ ++ + I+KA+
Sbjct: 477 IFSIARAMPPSRLALLGVATPASQTVRLRADELLSRIVKAK 517
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 44/73 (60%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
+Q R +++WRD +AR++D+S Y++PNH + +A+++P + P QTV+
Sbjct: 445 EQFSVFRAVHQWRDEVAREQDDSVNYIMPNHQIFSIARAMPPSRLALLGVATPASQTVRL 504
Query: 632 HVLDIHAIILKAR 644
++ + I+KA+
Sbjct: 505 RADELLSRIVKAK 517
>gi|409075144|gb|EKM75528.1| hypothetical protein AGABI1DRAFT_79866 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 882
Score = 276 bits (705), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 231/441 (52%), Gaps = 66/441 (14%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFC--HPYEYEL 223
A ++ +PQL FK K DN + + P L K NAL PL + D + HPY YE+
Sbjct: 158 ASQLPKPQLSFKYKADND-DAPWYPSLTHKYNALVPLGHVYADADDDTTVIANHPYRYEI 216
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ P L++TP I+ P+ + ++++L+ EIA+DLE+H+YR+Y
Sbjct: 217 NHITYPSHVYAPANPSPPASLAETPYSWISTPDGLQNMLTKLRAASEIAVDLEHHSYRTY 276
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G+ CLMQISTR++D++VD + LR+++EVLNEV TD IVKVFHGA+SDI WLQ+DF LY
Sbjct: 277 LGFLCLMQISTREEDFVVDVIALRDEMEVLNEVFTDPKIVKVFHGAESDIVWLQQDFNLY 336
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV +FDT+ A K L PR LA LL+ YCD DK +QL DWR RPLP+ ++YAR+DTH
Sbjct: 337 VVNLFDTYHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDTH 396
Query: 404 YLLYVYDCMK---LDLSAAA-------------------------------------HGK 423
+LL++YD ++ LD A H
Sbjct: 397 FLLFIYDNLRNALLDRGGPASRSRSSSPPNASTSLSTPPANILRTPPPTAHASKNPLHAS 456
Query: 424 QNLVLS--------------------TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLN 463
N VL+ T +N + K+ KP+F + S N
Sbjct: 457 INHVLTRSSETCLRVYVKEVYDRSSGTGSNGWDTLARKWNKPLFTALSFSYQSSSDEGHN 516
Query: 464 --NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC-CNPVPQ 520
QK R ++ WR+ ++R++DEST YVLPN L ++A++ P D+ + + VP
Sbjct: 517 VPEMQKAVYRAVHWWRESVSREEDESTRYVLPNQYLFRIAEAPPGDLGNLLRLFGSSVPV 576
Query: 521 TVKEHVLDIHAIILKARLQSL 541
VK ++ ++ A +SL
Sbjct: 577 VVKRRAKELLDVVRNAVKRSL 597
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 549 QPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 608
+P + Q H+ QK R ++ WR+ ++R++DEST YVLPN L ++A
Sbjct: 497 KPLFTALSFSYQSSSDEGHNVPEMQKAVYRAVHWWRESVSREEDESTRYVLPNQYLFRIA 556
Query: 609 QSIPRDIQGIFAC-CNPVPQTVKEHVLDIHAIILKA 643
++ P D+ + + VP VK ++ ++ A
Sbjct: 557 EAPPGDLGNLLRLFGSSVPVVVKRRAKELLDVVRNA 592
>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 746
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 224/386 (58%), Gaps = 25/386 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKP----LAILLEKYDAIESFCHPYEYELD 224
+ +PQLQF VDNS + F P L +KP+++K L I+ E + + HPYE E+D
Sbjct: 129 VTKPQLQFSRPVDNSESKPFMPLLNDKPHSIKSFTDSLIIIPESEELPSHYAHPYEVEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
L+ EP ++ P + + T E + ++ +LK+ EIA+DLE+H+YRSY
Sbjct: 189 KQEYNASVLQVAEPLKSQPWNSESTWVDTS-EALQSMLDKLKECTEIAVDLEHHDYRSYY 247
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR +D++VDTL LR++L +LNEV D NI+KV HGA DI WLQ+D GLYV
Sbjct: 248 GIVCLMQISTRKEDFLVDTLALRDELHILNEVFADPNILKVLHGAFMDIIWLQRDLGLYV 307
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT+ A + L PR SLAYLL+ Y + + K +QL DWR RPL +P YAR DTH+
Sbjct: 308 VSLFDTYHASRALGFPRHSLAYLLEKYANFKTSKKYQLADWRVRPLSKPMHAYARADTHF 367
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE--------------KPVFNEE 450
LL +YD ++ L ++N + SRN+ K ++E P+ EE
Sbjct: 368 LLNIYDQIRNQLI-----RENKLAEVLFESRNVAKRRFEYSRFRPKVPSPAVFTPIEKEE 422
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + + + + + L+ +++WRD IAR DES Y++PN +++ + + P D G
Sbjct: 423 PWRTLVYQYNVPSTKIEL-LKRIWEWRDMIARRDDESPRYIMPNQLMISLVEYTPIDPAG 481
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKA 536
+ + N + V+ + I +I K+
Sbjct: 482 VISVSNVMTDHVRSNSKVIANLIKKS 507
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
L+ +++WRD IAR DES Y++PN +++ + + P D G+ + N + V+ + I
Sbjct: 441 LKRIWEWRDMIARRDDESPRYIMPNQLMISLVEYTPIDPAGVISVSNVMTDHVRSNSKVI 500
Query: 637 HAIILKA 643
+I K+
Sbjct: 501 ANLIKKS 507
>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
Length = 833
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 180/520 (34%), Positives = 274/520 (52%), Gaps = 41/520 (7%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E S+ F L ++ KS+V KT + +P + + +++ L L
Sbjct: 2 EPSQDFKSLQESVQKSLVSTVKTVNRIAAEDLGFQRTVNPEVGQQLEDRTARLLELATRL 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L++ + ++ LE +DI + + D LE +T +D G V +P
Sbjct: 62 LQSSGKACNVKAPKLEDVEDIEMNWRGVVDVVDSTLEKADTALDEYTGL----VKRKEPP 117
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+ + +A S + KS N + N I +PQL F+ + DN ++P
Sbjct: 118 V-----SDSATTSK--------RSKSMNKVIRN---ANISKPQLLFERQPDNFPSGPWKP 161
Query: 191 KLKEKPNA---LKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
L EKP+A L+ ++ + HPYE E+ V + K EP P+ T
Sbjct: 162 ILSEKPHAKVSLEESLKIVPNESGAPQYQHPYEREIASMVYPKRVYKEAEPVMYQPVDTT 221
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-L 306
+ E V +++ ELK+ +EIA+DLE+H++RSY G LMQISTR+KD+IVDTL+
Sbjct: 222 QATWVDTYEGVLEMLKELKKAKEIAVDLEHHDFRSYIGLVSLMQISTREKDWIVDTLQPW 281
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
R LEVLNEV T+ I+KVFHGA D+ WLQ+D GLYV G+FDT AC L P +SLA+
Sbjct: 282 RHKLEVLNEVFTNPKIIKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACDQLHYPAKSLAF 341
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ-- 424
LL + D D+DK +QL DWR RP+PE + YAR+DTHYLLY+YD ++ +L A + +
Sbjct: 342 LLSKFVDFDADKQYQLADWRIRPIPEEMMYYARSDTHYLLYIYDKVRNELVATSDKSKPE 401
Query: 425 -NLVLSTFTNSRNICKLKYEKPVFNEEG-------YMNIFR-SHALLNNQQKYALRELYK 475
NL+ SR + +YE P ++EE Y +F+ SH L+++Q + ++K
Sbjct: 402 TNLIERALEKSRELSLSRYENPGYDEETGEGSRGWYGYVFKNSHMALDSEQFAVFKAVWK 461
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
WRD AR +DE+ YVL + ++A+ P D + + +
Sbjct: 462 WRDDTARAEDENPNYVLSTRDITEIARLNPPDAKALHSLL 501
>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
Length = 898
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/406 (37%), Positives = 231/406 (56%), Gaps = 30/406 (7%)
Query: 153 KKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPLAILLEKY- 209
KK++A + M + G+ +I +PQLQF VK+DN+ + + F P LK KP+AL L L
Sbjct: 133 KKETAGFPRMYSHGSSKIVKPQLQFDVKLDNADDGRAFRPLLKSKPHALVGLEESLGGSI 192
Query: 210 -DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
D + + HPYE E++ + EP P++D+ + + E V ++S+LKQ
Sbjct: 193 EDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKAIFVETLEDVHAMLSQLKQA 252
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFH 327
+EIA+DLE+H+ Y G CLMQISTR++D+IVDTLK R+ L+VLNEV D +I+KV H
Sbjct: 253 EEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLH 312
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
G+ D+ WLQ+D GLY+VG+FDT A L +P++SL +LL Y D+DK +Q DWR
Sbjct: 313 GSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRI 372
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMK---LDL---SAAAHGKQNLVLSTFTNSRNICKLK 441
RPL + YAR+DTH+LLY++D ++ LDL S G + + T
Sbjct: 373 RPLLAGMLDYARSDTHFLLYIFDRLRNQLLDLPSESGFGAGGREAIDCT----------- 421
Query: 442 YEKPVFNEEGYMNIFRSHALLNN-------QQKYALRELYKWRDRIARDKDESTGYVLPN 494
E+P ++ H +L+N +Q R L++WRD+ AR DES VL
Sbjct: 422 -ERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVFRALHEWRDKTARADDESPQTVLSK 480
Query: 495 HMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
L ++AQ +P D + +PV +++ ++ +I +AR Q
Sbjct: 481 RALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVAGLIREARQQG 526
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+Q R L++WRD+ AR DES VL L ++AQ +P D + +PV ++
Sbjct: 449 TREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASL 508
Query: 630 KEHVLDIHAIILKARLQ 646
+ ++ +I +AR Q
Sbjct: 509 RSRTDEVAGLIREARQQ 525
>gi|366995964|ref|XP_003677745.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
gi|342303615|emb|CCC71396.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
Length = 755
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 220/381 (57%), Gaps = 32/381 (8%)
Query: 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA----ILLEKYDAIESFCHPYEYEL 223
+I +PQL+F +DN+ F P LKEKP ALKPL ++ E + + PYEYE+
Sbjct: 131 QILKPQLKFTTPIDNTESHPFIPLLKEKPFALKPLEESMQMIPEDETSPMHYPQPYEYEI 190
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + L+ ++P + +D + + Q+ ++ +L+ EIA+DLE+H+YR+Y
Sbjct: 191 DHQEYNDLILQKKDPIPSTSWTDNEPIWVDTVSQLQSIMPDLEASTEIAVDLEHHDYRTY 250
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR DY++DTL LREDL++LN V + I KVFHGA DI WLQ+D GLY
Sbjct: 251 YGITCLMQISTRKNDYLIDTLALREDLQILNNVFANPMITKVFHGAFMDIIWLQRDLGLY 310
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VVG+FDT A + + +P+ SLAYLL+ + + K +QL DWR RPL + YAR DTH
Sbjct: 311 VVGLFDTFHASRAMGLPKHSLAYLLEKFAQFKTSKKYQLADWRIRPLSKAMHAYARADTH 370
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLN 463
+LL ++D M+ L +QN + SRN+ K ++E F + + +++ L+
Sbjct: 371 FLLNIFDQMRNSLI-----EQNKLAGVLKESRNVAKRRFEYSSFRPK----VLQTNGLVY 421
Query: 464 N-------------------QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
+ Q++ L+ELY+WRD+IAR DES +V+PN +L+ +
Sbjct: 422 SPIEKDDPWKTIMFQYNIPPQKEPLLKELYQWRDKIARRDDESPRFVMPNQLLVSLVAYT 481
Query: 505 PRDIQGIFACCNPVPQTVKEH 525
P D G+ + N V V+ +
Sbjct: 482 PIDAPGVVSVSNSVTDYVRSN 502
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
Q++ L+ELY+WRD+IAR DES +V+PN +L+ + P D G+ + N V V+
Sbjct: 442 QKEPLLKELYQWRDKIARRDDESPRFVMPNQLLVSLVAYTPIDAPGVVSVSNSVTDYVRS 501
Query: 632 H 632
+
Sbjct: 502 N 502
>gi|241948847|ref|XP_002417146.1| exosome component 3'-5' exonuclease [Candida dubliniensis CD36]
gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
CD36]
Length = 776
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 227/400 (56%), Gaps = 34/400 (8%)
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-----YDAIE---- 213
N+ + E+PQL+FKV +DNS F+PKL KP+AL P L D+IE
Sbjct: 133 NEKPSKTEKPQLKFKVPIDNSEAGPFKPKLSSKPHALVPFNDSLINPEPVYEDSIEIIDP 192
Query: 214 -SFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ PYEYE+D + L +P S T + + E++ ++V ELK+ EIA
Sbjct: 193 PFYAQPYEYEIDNQPYPDAILAKSDPIPPKDWSTTKAIWVDTVEELHKMVPELKKSTEIA 252
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRSY G CLMQIS+R++D+IVDTL LR+DL VLNEV D NIVKVFHGA D
Sbjct: 253 VDLEHHDYRSYYGIVCLMQISSREQDWIVDTLVLRDDLTVLNEVFADPNIVKVFHGAFMD 312
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I WLQ+D GLYVV +FDT+ A + L PR SLAYLL+ Y + K +QL DWR RPL
Sbjct: 313 IIWLQRDLGLYVVSLFDTYHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSP 372
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV-- 446
P + YAR+DTH+LL++YD +K L A N + +SR + K ++E +P+
Sbjct: 373 PMLAYARSDTHFLLFIYDQLKNKLIDA-----NKLAQVLYDSRQVAKRRFEYTKYRPMAN 427
Query: 447 ------------FNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
FN + S + + ++ + LYKWRD +A+ +DES Y++PN
Sbjct: 428 TFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKQQDESVRYIMPN 487
Query: 495 HMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
+L+ + P D+ I + V+ + ++ +I
Sbjct: 488 QLLVSLVNLESPVDLNKILNVSYRISDAVRINAKELANLI 527
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHA 638
LYKWRD +A+ +DES Y++PN +L+ + P D+ I + V+ + ++
Sbjct: 466 LYKWRDLMAKQQDESVRYIMPNQLLVSLVNLESPVDLNKILNVSYRISDAVRINAKELAN 525
Query: 639 II 640
+I
Sbjct: 526 LI 527
>gi|150951537|ref|XP_001387875.2| exosome component 3'-5' exonuclease [Scheffersomyces stipitis CBS
6054]
gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
stipitis CBS 6054]
Length = 792
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/387 (40%), Positives = 224/387 (57%), Gaps = 36/387 (9%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE------KY-DAIE-----SFC 216
I +PQL F+V VDNS F+PKL KPN LK +E Y ++IE +
Sbjct: 141 ITKPQLSFRVPVDNSESHPFKPKLTCKPNGLKSFEESVELKSPEPNYENSIEIVDPAFYP 200
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
PYEYE+D L+ EP + T + E++ ++V ELK+ EIA+DLE
Sbjct: 201 QPYEYEIDTQPYPASILEKSEPIAPQDWTSTTATWVDTVEELQKMVEELKKSSEIAVDLE 260
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
+H+YRSY G CLMQIS RD+D+I+DTL LR+DLE LN V T+ +IVKVFHGA DI WL
Sbjct: 261 HHDYRSYYGIVCLMQISNRDQDWIIDTLALRDDLECLNTVFTNPHIVKVFHGAFMDIIWL 320
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+D GLY+V +FDT+ A K L P+ SLAYLL+ + + K +QL DWR RPL P +
Sbjct: 321 QRDLGLYIVSLFDTYHASKSLGFPKFSLAYLLETFAHFKTSKKYQLADWRIRPLSPPMMA 380
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVFN---- 448
YAR+DTH+LL ++D +K L A + K VL +SR + K ++E +P+ N
Sbjct: 381 YARSDTHFLLSIFDQLKNKLIDAGNEKLQRVL---FDSRQVAKRRFEYTPFRPLTNNINS 437
Query: 449 -----------EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHML 497
E + +I + + + +K + LY WRDRIA+ +DES +V+PN +L
Sbjct: 438 RVSCPVMASNPREPFSSIMVQYN-VPSHKKSVVEALYNWRDRIAKIEDESVRFVMPNQLL 496
Query: 498 LQMAQ-SIPRDIQGIFACCNPVPQTVK 523
+ +A + P D+ + + V + V+
Sbjct: 497 VNLANLNQPVDVAKVLGASHFVSEHVR 523
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 571 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTV 629
+ +K + LY WRDRIA+ +DES +V+PN +L+ +A + P D+ + + V + V
Sbjct: 463 SHKKSVVEALYNWRDRIAKIEDESVRFVMPNQLLVNLANLNQPVDVAKVLGASHFVSEHV 522
Query: 630 K 630
+
Sbjct: 523 R 523
>gi|119195137|ref|XP_001248172.1| exosome component 3'-5' exonuclease [Coccidioides immitis RS]
gi|392862584|gb|EAS36760.2| exosome complex exonuclease Rrp6 [Coccidioides immitis RS]
Length = 766
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 171/548 (31%), Positives = 280/548 (51%), Gaps = 38/548 (6%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
+L+ F + ++V+ TKT + +P+ + + S + + L +S+
Sbjct: 2 DLATEFSPFQEKLTAALVQATKTTSQLLAQDIAFQRSVNPSLSNSLDEQSARFLGLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L+ ++ LE + + + + D+LLE + +D G + PSQ +
Sbjct: 62 LRFATSGSDLNAPSLEDEDGVDENWRGVVDVIDELLEKADACLDEFTGI-IKKLGPSQDE 120
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYEQLF 188
+E NK+ S F N + +I +PQL FK + +N F
Sbjct: 121 RGQEL----------------NKRASRAQFPGAHNFASSKIPKPQLSFKTRPNNHASSPF 164
Query: 189 EPKLKEKPNALKPLAILLEKYDA---IESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPL 244
P L++KP+AL PL + E+ +E HPY +E+ D + P + P+ P
Sbjct: 165 RPILRQKPHALIPLPPVAEQTSTNGDVEQSEHPYAHEIRDCHYPASTY-SSSTPQLYKPF 223
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
T + E V ++ ELK +EIA+DLE+H+ SY G CLMQISTR+KD+IVDTL
Sbjct: 224 ESTTATFVNTIEGVKVMLEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTL 283
Query: 305 -KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
RE+L++LNEV D I+KV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++S
Sbjct: 284 LPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNYPKKS 343
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
L +LL + +++++K +Q DWR RPL YAR+DTHYLLY+YD ++ +L +
Sbjct: 344 LKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEKSTPD 403
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKW 476
NL+ S+ +YE+PV++ E G+ ++ RS +LL +Q + +++W
Sbjct: 404 TNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSRSPSLLKREQLAVFKAVHRW 463
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RD+ AR DE VL L +A +P D + PV ++++ + ++ +I A
Sbjct: 464 RDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAALLKLAIPVSPSLRKRLSELLKVIKDA 523
Query: 537 RLQSLTKP 544
+ + P
Sbjct: 524 KASGVDGP 531
>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
Length = 877
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/346 (43%), Positives = 204/346 (58%), Gaps = 31/346 (8%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
I RPQ ++ VDNS + FE LEK D HP E +P
Sbjct: 171 IPRPQDVHRILVDNS-SKPFEHSW-------------LEKSDDGSRVVHPLEK-----IP 211
Query: 229 KEDFLKCE----EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
E + + EP + L DTP + + + + L ++LK E A+DLE+++YRS+Q
Sbjct: 212 MEQLVDRDFPESEPIKPPALDDTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQ 271
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTLKLR+ L + L E+ D KV HGAD DI WLQ+DFG+Y
Sbjct: 272 GLTCLMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIY 331
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
V +FDT QA + L M R SL +LL H+C V ++K +Q DWR RPLP+ I+YAR DTH
Sbjct: 332 VCNLFDTGQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTH 391
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLN 463
YLLY+YD M+L L + + +L+L + S+ IC YEK + Y+ I H L
Sbjct: 392 YLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYI---HGLKE 448
Query: 464 NQ----QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N+ Q L +YKWRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 449 NEFDARQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMP 494
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
+Q L +YKWRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 454 RQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMP 494
>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
Group]
Length = 902
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/346 (43%), Positives = 204/346 (58%), Gaps = 31/346 (8%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
I RPQ ++ VDNS + FE LEK D HP E +P
Sbjct: 196 IPRPQDVHRILVDNS-SKPFEHSW-------------LEKSDDGSRVVHPLEK-----IP 236
Query: 229 KEDFLKCE----EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
E + + EP + L DTP + + + + L ++LK E A+DLE+++YRS+Q
Sbjct: 237 MEQLVDRDFPESEPIKPPALDDTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQ 296
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTLKLR+ L + L E+ D KV HGAD DI WLQ+DFG+Y
Sbjct: 297 GLTCLMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIY 356
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
V +FDT QA + L M R SL +LL H+C V ++K +Q DWR RPLP+ I+YAR DTH
Sbjct: 357 VCNLFDTGQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTH 416
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLN 463
YLLY+YD M+L L + + +L+L + S+ IC YEK + Y+ I H L
Sbjct: 417 YLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYI---HGLKE 473
Query: 464 NQ----QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N+ Q L +YKWRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 474 NEFDARQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMP 519
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
+Q L +YKWRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 479 RQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMP 519
>gi|448519311|ref|XP_003868060.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis
Co 90-125]
gi|380352399|emb|CCG22625.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis]
Length = 814
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 174/495 (35%), Positives = 262/495 (52%), Gaps = 69/495 (13%)
Query: 69 VMTLVDSLLKTQNISKSMSKLYLEGQKDILTEAN----DKLLESINTRIDVMAGTKTPSV 124
++T+ + LL+T + + L GQ++I +E++ +++SI +ID
Sbjct: 97 LLTITNDLLRTASSQTNPVDPILFGQENISSESSWNPVSNVIDSIFEKIDYTF------- 149
Query: 125 LPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSY 184
+ NK Q + D N + N+ IE+PQL+FKV VDNS
Sbjct: 150 ---------DQINKKQAGGEQKQYLED-----GNSSISNEQTQRIEKPQLKFKVPVDNSE 195
Query: 185 EQLFEPKLKEKPNALKPL---------AILLEKYDAIES-----FCHPYEYELDLYVPKE 230
++ F+PK+ KPNAL+P A + E D+IE + HPYEYE+D +
Sbjct: 196 QEPFKPKITSKPNALQPFESVNKLTNPAPVYE--DSIEVVDPPYYAHPYEYEIDTQPYPD 253
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLM 290
L+ EP S T + + + + +++ EL Q EIA+DLE+H+YRSY G CLM
Sbjct: 254 SILEESEPIPPNDWSSTSAIWVDTVDGLNEMIKELSQSSEIAVDLEHHDYRSYYGIVCLM 313
Query: 291 QISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
QIS R+KD+I+DTL LR DL LN++ TD I+KV HGA DI WLQ+D GLY+V +FDT
Sbjct: 314 QISNREKDWIIDTLVLRGDLSALNKIFTDPKIIKVLHGAFMDIIWLQRDLGLYIVSLFDT 373
Query: 351 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 410
+ A + L + SL YLL + + K +QL DWR RPLP+P + YAR+DTH+LLY++D
Sbjct: 374 YHASRQLGFSKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPKPMLAYARSDTHFLLYIFD 433
Query: 411 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVFNEEGYMNIFRSHALLNNQ- 465
++ L + + + +SR + K ++E +P+ + G A N+
Sbjct: 434 QLRNKLIDS-----DKLARVLFDSRQVAKRRFEYTKFRPLSSNLGSKVSCPVMAANPNEP 488
Query: 466 -------------QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGI 511
++ + +LYKWRD IAR +DES Y++PN +L+ +A P D +
Sbjct: 489 WGSLMYQYNVPAFKRPVVEQLYKWRDLIARQEDESVRYIMPNQLLVSLATLESPVDAGKV 548
Query: 512 FACCNPVPQTVKEHV 526
VP V EHV
Sbjct: 549 LN----VPSYVSEHV 559
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHV 633
+ +LYKWRD IAR +DES Y++PN +L+ +A P D + VP V EHV
Sbjct: 505 VVEQLYKWRDLIARQEDESVRYIMPNQLLVSLATLESPVDAGKVLN----VPSYVSEHV 559
>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
Length = 701
Score = 273 bits (698), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 203/316 (64%), Gaps = 15/316 (4%)
Query: 243 PLSDT-PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
P+ D PL+++ + + +L + L+Q +E A+DLE+H+YRS++G+TCLMQ+STR+KD++V
Sbjct: 112 PMDDEHPLVVVDTEDALEELATHLEQCKEFAVDLEHHSYRSFKGFTCLMQVSTREKDFVV 171
Query: 302 DTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
D L LR + + L + D N +KV HGAD+D++WLQKDFG++V +FDT QA + L +P
Sbjct: 172 DVLALRSLVRDALGKAFADPNTLKVMHGADNDVQWLQKDFGIFVSCLFDTGQAARVLELP 231
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
++LAYLL+HYC + ++K FQL DWR RPL + YAR DTHYLLYVYD +K L AA
Sbjct: 232 SKALAYLLQHYCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLYVYDELKKAL--AA 289
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYM-NIFRSHAL--LNNQQKYALRELYKWR 477
G +N + +T T SR++C KY P F+E Y ++ +++ L LN+ Q L+KWR
Sbjct: 290 RG-ENSIAATLTQSRDVCLKKYLPPTFDEGSYYEDLLKTNNLTNLNDPQLAVYAALFKWR 348
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
D AR+ DES GYV+P ++L++A + P + + C + +H + +I +AR
Sbjct: 349 DAAAREADESLGYVMPRELMLRLAIAAPSTKRALMEECRGQVPLIAKHAETVADLISRAR 408
Query: 538 LQ-------SLTKPVE 546
SL PV+
Sbjct: 409 AMGAPSFKPSLVDPVD 424
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+ Q L+KWRD AR+ DES GYV+P ++L++A + P + + C +
Sbjct: 334 NDPQLAVYAALFKWRDAAAREADESLGYVMPRELMLRLAIAAPSTKRALMEECRGQVPLI 393
Query: 630 KEHVLDIHAIILKAR 644
+H + +I +AR
Sbjct: 394 AKHAETVADLISRAR 408
>gi|406606562|emb|CCH42061.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 744
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 226/396 (57%), Gaps = 30/396 (7%)
Query: 163 NKGA---VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL----AILLEKYDAIESF 215
NKGA E+PQ FK +DNS F+P LKEKPNA+ P + E+ + +
Sbjct: 124 NKGAHLNKRQEKPQKFFKTPIDNSESHPFKPLLKEKPNAMVPFQETFILTTEEENDPAHY 183
Query: 216 CHPYEYELDLYVPKEDFLKCEEPKQALPLSD---TPLMMITEPEQVTQLVSELKQQQEIA 272
PYE E+ + +E K E +P D T + + E++ ++ +L+ EIA
Sbjct: 184 KQPYEIEI---LNQEYNSKILEKSDPIPSKDWQGTEPIWVDTIEELNKMHKDLQSVSEIA 240
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRSY G CLMQISTRD+D+++DTL LREDL++LN V TD I KVFHGA D
Sbjct: 241 VDLEHHDYRSYYGLVCLMQISTRDQDWLIDTLALREDLKILNSVFTDPKITKVFHGAFMD 300
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I WLQ+D GLY+V +FDT+ A + L P+ SLAYLL+ + + K +QL DWR RPL
Sbjct: 301 IIWLQRDLGLYIVSLFDTYHASRQLGFPKHSLAYLLERFAHFKTSKKYQLADWRIRPLTG 360
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
P YAR+DTH+LL ++D ++ L + N + + SRN+ + ++E F
Sbjct: 361 PMKLYARSDTHFLLNIFDQLRNMLIES-----NKLTNVLFESRNVARRRFEYSSFRPLAS 415
Query: 453 MNIFRS------------HALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQM 500
N+ L+ ++ +R LY+WRD+IA+ DES YV+PN +L+ +
Sbjct: 416 TNVVSPIEKPEPWKSLLYQYNLSASREAVVRSLYQWRDQIAKQDDESPRYVMPNQLLVSL 475
Query: 501 AQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
A +P D G+ + N + V+++ +I +I ++
Sbjct: 476 ASLVPTDPAGVLSSSNLISDHVRKNAKEISELIKRS 511
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 635
+R LY+WRD+IA+ DES YV+PN +L+ +A +P D G+ + N + V+++ +
Sbjct: 444 VVRSLYQWRDQIAKQDDESPRYVMPNQLLVSLASLVPTDPAGVLSSSNLISDHVRKNAKE 503
Query: 636 IHAIILKA 643
I +I ++
Sbjct: 504 ISELIKRS 511
>gi|357146328|ref|XP_003573952.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 906
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/345 (43%), Positives = 203/345 (58%), Gaps = 29/345 (8%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ +++ VDN+ + F + + A+ PL L P E D
Sbjct: 200 IARPQDLYRIVVDNTSKPFAHAFLERSDDGCRAIHPLEKL------------PMEQLFDR 247
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP+ EP + L DTP + + + + L ++LK E A+DLE+++YRS+QG
Sbjct: 248 RVPES------EPLKPPALDDTPFTFVEDRKTLEVLATKLKSATEFAVDLEHNHYRSFQG 301
Query: 286 YTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D+IVDTLKLR+ L E L EV D KV HGA DI WLQ+DFG+YV
Sbjct: 302 LTCLMQISTRTEDFIVDTLKLRKYLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYV 361
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L M R SL +LL H+C V ++K +Q DWR RPLP+ +YAR DTHY
Sbjct: 362 CNLFDTGQASRILQMDRNSLEHLLHHFCGVVANKEYQSADWRLRPLPDEMTKYAREDTHY 421
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL--- 461
LLY+YD M+L L + + +L+L S IC YEK + + Y+ I H L
Sbjct: 422 LLYIYDLMRLRLVNESSDENDLLLEVCKRSNEICLQLYEKELLTDSSYLYI---HGLKEN 478
Query: 462 -LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
L+ +Q L LY+WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 479 ELSARQLAVLSGLYQWRDSVARAEDESTGYILPNKALLEIAKQMP 523
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
+Q L LY+WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 483 RQLAVLSGLYQWRDSVARAEDESTGYILPNKALLEIAKQMP 523
>gi|378728924|gb|EHY55383.1| exosome complex exonuclease Rrp6 [Exophiala dermatitidis
NIH/UT8656]
Length = 820
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 183/550 (33%), Positives = 279/550 (50%), Gaps = 50/550 (9%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYIS-GVAGTSDKVMTLVDS 75
+L+ F + S+V T+TA S + S +S +S + + ++ L +
Sbjct: 2 DLTSDFATFRDSVQTSVVNVTRTATQV-SNQDLSFHRSSSEKLSRALERQNAHLLRLTSN 60
Query: 76 LLKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGT---KTPSVLP 126
LLK ++ L+ Q DI + + D LLE ++ +D +G ++P P
Sbjct: 61 LLKAAAKDTNLKAPGLKDQDDIDDNWRRIVDVVDDLLEKADSALDEYSGVIKRQSPGQDP 120
Query: 127 SQPKIVKESWNKNAKASNVWQ-EVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYE 185
P VK K K W EV E+PQ F+ +VDN+
Sbjct: 121 EPP--VKRL--KTGKGPQSWSSEV-------------------TEKPQQFFERQVDNAET 157
Query: 186 QLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
+ ++P LK+KP+A PL + D + HPY +E++ Y + P P
Sbjct: 158 KPWKPLLKQKPHATVPLEESIGDEDT--GYKHPYLHEIEQYAYPPSVYQTSPPIPFAPPE 215
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
+ + I E V ++ ELK EIAIDLE+++ RSY G CLMQISTRDKD+I+DTLK
Sbjct: 216 QSEPIFIDTEEGVRDMLEELKGASEIAIDLEHNDQRSYVGMVCLMQISTRDKDWIIDTLK 275
Query: 306 -LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
RE+L++LNEV D I+KVFHG++ DI WLQ+D GLYVVG+FDT+ AC L P + L
Sbjct: 276 PWRENLQILNEVFADTKILKVFHGSNMDIIWLQRDLGLYVVGLFDTYHACCALQFPGKGL 335
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
+LL + + ++ K +Q DWR RPLP I YAR+DTH+LL +YD ++ L +
Sbjct: 336 KHLLHQFANFEAQKQYQTADWRVRPLPRELIDYARSDTHFLLNIYDNLRNMLIERSTPND 395
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEG-------YMNIFRSHALLNNQQKYALRELYKWR 477
NL T S+ YE+ V++ E + + +N+Q R +++WR
Sbjct: 396 NLTDFVLTQSKKEALQTYERSVYDMESGRGPLGWLGLLLQRTVRFDNEQFGVFRAVHEWR 455
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVPQTVKEHVLDIHAIIL 534
DR AR+ DE YVLPN +L Q+A+++P + +F P P V +H+ +I +
Sbjct: 456 DRKARELDEGLQYVLPNRVLWQIAETMPTSNFNFNAVFRGHLPKP--VLDHLPEIIDAVK 513
Query: 535 KARLQSLTKP 544
+ + + P
Sbjct: 514 RGKFEGRAGP 523
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVP 626
+N+Q R +++WRDR AR+ DE YVLPN +L Q+A+++P + +F P P
Sbjct: 441 DNEQFGVFRAVHEWRDRKARELDEGLQYVLPNRVLWQIAETMPTSNFNFNAVFRGHLPKP 500
Query: 627 QTVKEHVLDIHAIILKARLQPLTKP 651
V +H+ +I + + + + P
Sbjct: 501 --VLDHLPEIIDAVKRGKFEGRAGP 523
>gi|380485396|emb|CCF39387.1| 3'-5' exonuclease [Colletotrichum higginsianum]
Length = 732
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 228/380 (60%), Gaps = 18/380 (4%)
Query: 180 VDNSYEQLFEPKLKEKPNALKPLA---ILLEKYDAIESFCHPYEYEL-DLYVPKEDFLKC 235
VDN+ L++P + +KP+A PL + +E D + HPYE E+ + P + +
Sbjct: 2 VDNN--ALWKPVITKKPHAKVPLEESLVTVETEDGFVQYKHPYETEIIEAKYPNRVYEQA 59
Query: 236 EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR 295
E P P+ T + E V ++ +LK+ +EIA+DLE+H++R+Y G T LMQISTR
Sbjct: 60 E-PIPWQPVETTEATFVDTYEGVLDMLKDLKKAKEIAVDLEHHDFRTYVGLTSLMQISTR 118
Query: 296 DKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
+KD+IVDTLK R LEVLNEV D +IVKVFHGA D+ WLQ+D GLYV G+FDT AC
Sbjct: 119 EKDWIVDTLKPWRGQLEVLNEVFADPSIVKVFHGAFMDMVWLQRDLGLYVNGLFDTGMAC 178
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ L P++SLA+LLK + + D+DK +QL DWR RPL E + YAR+DTHYLLY+YD M+
Sbjct: 179 EVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIYDKMRN 238
Query: 415 DL---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN------EEGYMNIFRSHALLNNQ 465
+L S + + + + S+ + +Y FN +G+ N H + +
Sbjct: 239 ELVMKSDRGNPGSDYIEAALQKSKTLSLSRYGGETFNPKTGKGSKGWYNTLLKHPMPFSG 298
Query: 466 QKYAL-RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
Q++A+ R ++ WRD +AR +DEST +VLPN ++ +A+ +P D + + A K
Sbjct: 299 QQFAVYRAIWAWRDEVARREDESTPFVLPNGIIGDIAKHMPPDAKALHALIPNHAFLAKR 358
Query: 525 HVLDIHAIILKARLQSLTKP 544
+V +I +AR + + +P
Sbjct: 359 NVTEIWKRYQEARERGVNEP 378
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 529 IHAIILKARLQSLTK-PVEKLQPSLD-GMKKKQQQQVSPPHDSNNQQKYALRELYKWRDR 586
I A + K++ SL++ E P G K + P + QQ R ++ WRD
Sbjct: 254 IEAALQKSKTLSLSRYGGETFNPKTGKGSKGWYNTLLKHPMPFSGQQFAVYRAIWAWRDE 313
Query: 587 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 646
+AR +DEST +VLPN ++ +A+ +P D + + A K +V +I +AR +
Sbjct: 314 VARREDESTPFVLPNGIIGDIAKHMPPDAKALHALIPNHAFLAKRNVTEIWKRYQEARER 373
Query: 647 PLTKP 651
+ +P
Sbjct: 374 GVNEP 378
>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
laibachii Nc14]
Length = 770
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 220/378 (58%), Gaps = 15/378 (3%)
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYEL-DL 225
+E+ +PQ F+ +DNS F KL KP+A+ + + + DA SF HPY EL L
Sbjct: 142 MEMPKPQQSFQESIDNSTAP-FVSKLSSKPHAIA-TSFPIHEEDA--SF-HPYYNELVGL 196
Query: 226 YVP--KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+P + + + + + L + + + Q++ L++ +AIDLE+HNYRSY
Sbjct: 197 KIPDWQLEMSEMDHLFDKISLQKASFLWVDSADSFQQMLLILQEAHALAIDLEHHNYRSY 256
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQIST + D++VDTL LR L++LN+V D +KV HGAD DI WLQ+D GLY
Sbjct: 257 LGLTCLMQISTHNHDFLVDTLALRSSLQLLNQVFCDPQKLKVLHGADMDILWLQRDLGLY 316
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDT +A + L +PR SLAYLLK CD+++DK +QL DWR RPL E +YAR DT
Sbjct: 317 VVNMFDTGRAARVLQLPRFSLAYLLKKCCDIEADKQYQLADWRQRPLTEEMTRYAREDTR 376
Query: 404 YLLYVYDCMKLDLSAAAHGK-QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR----- 457
YLL++Y MK +L + NLV +S +C Y KP +E+ +
Sbjct: 377 YLLFIYRKMKEELLLKSDSNAANLVREVHKHSNQLCLQVYSKPQVSEDDCTALVTKLTAS 436
Query: 458 -SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
+ Q+ R LY WRD +AR+ DES+ YVLPN +LLQ+A+ +P + + N
Sbjct: 437 AGVTAFSELQQRVFRRLYFWRDAVARETDESSMYVLPNQLLLQIARHLPSKSEQLLRLRN 496
Query: 517 PVPQTVKEHVLDIHAIIL 534
+P V++H +I +IL
Sbjct: 497 VIPPLVQKHAFEIVQLIL 514
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
Q+ R LY WRD +AR+ DES+ YVLPN +LLQ+A+ +P + + N +P V++H
Sbjct: 446 QQRVFRRLYFWRDAVARETDESSMYVLPNQLLLQIARHLPSKSEQLLRLRNVIPPLVQKH 505
Query: 633 VLDIHAIIL 641
+I +IL
Sbjct: 506 AFEIVQLIL 514
>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
Length = 867
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 212/344 (61%), Gaps = 24/344 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYE--YELDLY 226
I++PQ ++ + V+N+ Q FE + LE+ + + HP E LD +
Sbjct: 191 IKKPQEEYNILVNNA-NQPFE-------------HVWLERSEDDQRVMHPLEKLSVLD-F 235
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
V K+ L EP + LPL +TP + E + + +LV++L+ +E A+DLE++ YRS+QG
Sbjct: 236 VDKD--LNEMEPVKPLPLEETPFKFVQEVKDLKELVAKLRGVEEFAVDLEHNQYRSFQGL 293
Query: 287 TCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +DYIVDT KLR + L E+ D K+ HGAD DI WLQ+DFG+YV
Sbjct: 294 TCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKIMHGADRDIIWLQRDFGIYVC 353
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT QA + L + R SL +LL+H+C V ++K +Q DWR RPLPE +YAR DTHYL
Sbjct: 354 NLFDTGQASRVLNLGRNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYL 413
Query: 406 LYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL- 461
LY+YD M+L+L A ++ +L + S ++C YEK + E Y++++ A
Sbjct: 414 LYIYDVMRLELERMAKDDEHTDSPLLQVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAG 473
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N Q + L +WRD IAR +DESTGYVLPN +LL++A+ +P
Sbjct: 474 FNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMP 517
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N Q + L +WRD IAR +DESTGYVLPN +LL++A+ +P
Sbjct: 475 NAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMP 517
>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
Length = 858
Score = 271 bits (694), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 165/454 (36%), Positives = 239/454 (52%), Gaps = 51/454 (11%)
Query: 96 DILTEANDKLLESINTRIDVMAGTK--TPSVLPSQPKIVKESWNKNAKASNVWQEVHDNK 153
D L ND++ E + ID + T V+ S+ + +V DNK
Sbjct: 104 DWLVNVNDEIFERFDASIDEFRRVREETGRVVVSRA------------GGDSGVKVADNK 151
Query: 154 KKSANWFMLNKGAV-----EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK 208
K W + NK V I RPQ + + V+NS L+ + L+ +
Sbjct: 152 K----WILGNKAKVPFHIPTIRRPQEEHNILVNNSNRAFDHVWLERSEDGLRVI------ 201
Query: 209 YDAIESFCHPYEYELDLYVPKEDFLKCE----EPKQALPLSDTPLMMITEPEQVTQLVSE 264
HP E L DF+ EP LP+ T ++ E + + +L ++
Sbjct: 202 --------HPLERLSVL-----DFMDKSTGDVEPAPPLPIESTSFKLVEEVKDLKELAAK 248
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIV 323
L+ E A+DLE++ YRS+QG TCLMQISTR +D+IVDTLKLR + L EV D
Sbjct: 249 LRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKR 308
Query: 324 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF 383
KV HGAD D+ WLQ+DFG+Y+ +FDT QA + L + R SL +LL H+C V ++K +Q
Sbjct: 309 KVMHGADRDVVWLQRDFGIYICNLFDTGQASRVLKLERNSLEHLLHHFCGVTANKEYQNA 368
Query: 384 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKL 440
DWR RPLP+ I+YAR DTHYLL++YD M+ L + +N +L + S ++C
Sbjct: 369 DWRLRPLPDEMIRYAREDTHYLLHIYDLMRALLLSKPIDNENADPPLLEVYKRSYDVCMQ 428
Query: 441 KYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 499
YEK +F E Y+N++ A N QQ + LY+WRD IAR +DESTGY+LPN LL+
Sbjct: 429 LYEKELFTENSYLNMYGLPSAGFNAQQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLE 488
Query: 500 MAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
+A+ +P I + ++ H+ + +II
Sbjct: 489 IAKEMPVTISKLRQLLKSKHSYIERHLSSVVSII 522
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 565 PPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP 624
P N QQ + LY+WRD IAR +DESTGY+LPN LL++A+ +P I +
Sbjct: 447 PSAGFNAQQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKS 506
Query: 625 VPQTVKEHVLDIHAII 640
++ H+ + +II
Sbjct: 507 KHSYIERHLSSVVSII 522
>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
Length = 855
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/423 (37%), Positives = 232/423 (54%), Gaps = 43/423 (10%)
Query: 96 DILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKK 155
D L ND++ E +T ID + + L + + + +V DNKK
Sbjct: 101 DWLVNVNDEIFERFDTSIDEFKRVREETALSDD--------SASCAGVDSGVKVADNKK- 151
Query: 156 SANWFMLNKGAV-----EIERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLE 207
+ NK V I RPQ + + V+NS +E ++ + ++ A+ PL E
Sbjct: 152 ---GILGNKAKVPFHIPTIRRPQEEHNILVNNSNRGFEHVWLERSEDGSRAIHPL----E 204
Query: 208 KYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQ 267
K ++ +V K + EP LP TP ++ E + + +L ++L+
Sbjct: 205 KLSVLD------------FVDKR--IGDVEPAPPLPTESTPFKLVEEVKDLKELAAKLRG 250
Query: 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVF 326
E A+DLE++ YRS+QG TCLMQISTR +D+IVDTLKLR + L EV D KV
Sbjct: 251 VNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVM 310
Query: 327 HGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWR 386
HGAD DI WLQ+DFG+Y+ +FDT QA + L + R SL YLL H+C V + K +Q +WR
Sbjct: 311 HGADRDIVWLQRDFGIYICNLFDTGQASRVLKLERNSLEYLLHHFCGVTAKKEYQNAEWR 370
Query: 387 HRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYE 443
RPLP+ I+YAR DTHYLL++YD M+ L N ++ + S ++C YE
Sbjct: 371 LRPLPDEMIRYAREDTHYLLHIYDLMRALLLTKHSDNDNGDPPLVEVYKRSYDVCMQLYE 430
Query: 444 KPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 502
K +F E Y+N++ +A N QQ + LY+WRD IAR +DESTGY+LPN LL++A+
Sbjct: 431 KELFTENSYLNMYGLPNAGFNAQQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAK 490
Query: 503 SIP 505
+P
Sbjct: 491 EMP 493
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ + LY+WRD IAR +DESTGY+LPN LL++A+ +P
Sbjct: 451 NAQQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMP 493
>gi|449304144|gb|EMD00152.1| hypothetical protein BAUCODRAFT_366269 [Baudoinia compniacensis
UAMH 10762]
Length = 774
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 198/668 (29%), Positives = 320/668 (47%), Gaps = 86/668 (12%)
Query: 32 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ--NISKSMSKL 89
+++ T++A + S S + S + + +++ L D LL N S S+L
Sbjct: 9 ALLSTTRSASALASEDLAFHRSLSNSLASALDRQNARLLALSDRLLGVAAPNPSAVRSRL 68
Query: 90 ----YLEGQKDILTEANDKLLESINTRIDVMAGTK---TPSVLPSQPKIVKESWNKNAKA 142
EG + + D LLE +T +D G +P + K+ K
Sbjct: 69 SDIDAAEGNWRAVVDVVDSLLERADTALDEFTGAVKRLSPGAVEQMQKVGKR-------- 120
Query: 143 SNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL 202
D + K L+ +IE+PQL F+ N+ F P L+ KP+A++P
Sbjct: 121 -------QDERTK------LDWRKSDIEKPQLLFENVPTNNETGPFLPLLQSKPHAMRP- 166
Query: 203 AILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLV 262
K ++ HPY+ E+ Y + EP P ++ + + + +++
Sbjct: 167 -----KEESAPGL-HPYQSEILDYRWPAELYTTAEPSMYTPFEESTATFVDTEDAMYEML 220
Query: 263 SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKN 321
ELKQ +EIA+DLE+H+ RSY G CLMQISTR+KD+IVDTLK R L LNEV + +
Sbjct: 221 EELKQAKEIAVDLEHHDLRSYVGIVCLMQISTRNKDWIVDTLKPWRRKLSCLNEVFANPS 280
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 381
I+KV HGA D+ WLQ+D GLY+VG+FDTH AC+ L SLA+LLK + +VD+ K +Q
Sbjct: 281 ILKVLHGAYMDVIWLQRDLGLYLVGLFDTHYACRALGYAGASLAFLLKKFANVDAQKQYQ 340
Query: 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-SAAAHGKQNL----VLSTFTNSRN 436
DWR RPLP+ + YAR+DTHYLLY++D M+ +L + GK + + S
Sbjct: 341 TADWRIRPLPQELLDYARSDTHYLLYIFDNMRNELVQRSTFGKMDHEGDKLWDVLQKSSE 400
Query: 437 ICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+YE PV++ + G+ + R+ A L+ +Q R +++WRD +AR++D+S
Sbjct: 401 TALQRYEHPVYDFDLGQGTVGWYKLLARTSATLSKEQFSVFRAVHRWRDNVAREQDDSAH 460
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP----- 544
Y++ NH + +A+S+P + + Q V+ ++ A+I +A+ P
Sbjct: 461 YIMSNHHIFSIAKSMPTTKAELLGIAS--TQNVRLRADELLAVITQAKDDGRDGPELMDV 518
Query: 545 VEKLQPSLDGMKKKQQQQVS------PPHDS----NNQQKYALRELYK--WRDRIARDKD 592
+ K++P + K ++ +S P S N + LR + W ++ + D
Sbjct: 519 LNKVEPQV-ARKPLTKEAISHSVAAFVPRSSAATVNGESSLPLRSMTSGFWGSTLSGNSD 577
Query: 593 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPV 652
+ Y AQS+ A P+P E D I+ + QP +P+
Sbjct: 578 QKRAY--------SAAQSV--------ALTVPLPPLTAEIFADPADIVSQRATQPPEEPL 621
Query: 653 EKLQPSLD 660
+D
Sbjct: 622 SAADGVVD 629
>gi|294654453|ref|XP_456510.2| exosome component 3'-5' exonuclease [Debaryomyces hansenii CBS767]
gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
Length = 776
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/391 (39%), Positives = 229/391 (58%), Gaps = 31/391 (7%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKP--------LAILLEKYDAI--ESFCHPYE 220
+PQ+ F+ KVDNS F+PK+ KPN LK + + E+ + I E + PYE
Sbjct: 143 KPQINFRNKVDNSETHPFKPKISSKPNELKSFDESTKLIVPMKQEESNDIDPEYYVQPYE 202
Query: 221 YELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNY 280
+E+D + L +EP + P S T + + + + +++S L +Q EIAIDLE+H+Y
Sbjct: 203 FEIDSQPYPDSILTKKEPIPSKPWSKTSAIWVDSVDVLNEMISLLSEQSEIAIDLEHHDY 262
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
RSY G CLMQIS+RD+D+I+DTLKLR+DLE LN+V T+ +IVKVFHGA DI WLQ+D
Sbjct: 263 RSYYGIVCLMQISSRDQDWIIDTLKLRDDLESLNKVFTNPDIVKVFHGAFMDIIWLQRDL 322
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
GLY+V +FDT+ A K L P+ SLAYLL+ + + + K +QL DWR RPL P + YAR+
Sbjct: 323 GLYIVSLFDTYHASKKLGFPKFSLAYLLETFANFKTSKKYQLADWRIRPLSPPMLAYARS 382
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVFNEEGYMNI- 455
DTH+LL +YD ++ L A + VL SR + K ++E +P+ G ++
Sbjct: 383 DTHFLLNIYDQLRNKLIDAGANRLQEVL---YESRQVAKRRFEYTKFRPLSTSGGKVSCP 439
Query: 456 ---------FRSHALLNN---QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
F S L N +K + LY WRD +A+ DES Y++ N +L+ ++
Sbjct: 440 VMANNPKEPFSSILLQYNVPYHKKPLIEALYNWRDALAKRDDESVRYIMSNQLLVSLSSL 499
Query: 504 I-PRDIQGIFACCNPVPQTVKEHVLDIHAII 533
P D+Q + N + V+++ D+ +I
Sbjct: 500 SQPVDVQKVLGVSNYISDYVRQNAKDLANLI 530
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI-PRDIQGIFACCNPVPQTVKEHVLD 635
+ LY WRD +A+ DES Y++ N +L+ ++ P D+Q + N + V+++ D
Sbjct: 466 IEALYNWRDALAKRDDESVRYIMSNQLLVSLSSLSQPVDVQKVLGVSNYISDYVRQNAKD 525
Query: 636 IHAII 640
+ +I
Sbjct: 526 LANLI 530
>gi|452823689|gb|EME30697.1| exosome complex exonuclease RRP6 [Galdieria sulphuraria]
Length = 736
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 194/296 (65%), Gaps = 8/296 (2%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
LPL DT + + ++++L++++EIA+D+E H+YRS+QG+ CL+Q STR +D++V
Sbjct: 214 LPLEDTKCTFVNSLSSLEDMITKLEKEKEIAVDIENHSYRSFQGFICLLQFSTRQEDFVV 273
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D ++LR L++L+++L + NI+KV HGADSD++WLQ+DFGLY+V MFDT QA + L P
Sbjct: 274 DAIELRGHLKMLSKILENGNILKVLHGADSDVQWLQRDFGLYIVHMFDTGQASRQLKFPF 333
Query: 362 QSLAYLLKHYCDVDSDKT---FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418
SL+YLLK YC++D+ KT +QL DWR RPLPE YAR DTHYLLY+YD + +L
Sbjct: 334 LSLSYLLKRYCNIDNSKTKKYYQLADWRIRPLPEDMFSYARQDTHYLLYIYDRLCEELRQ 393
Query: 419 AAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWR 477
+++ NL+ + S + L YEKP N Y +I L + +Q ALR L +WR
Sbjct: 394 SSNCNNNLLTCAYRASIQVSMLIYEKPQMNPLEYQSILSRRKLHFDEKQTLALRTLCRWR 453
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC----NPVPQTVKEHVLDI 529
D IAR +DES YVLP ++++A+ IP+ + CC P+ +T + VL +
Sbjct: 454 DEIARIEDESLVYVLPEKCMIEIAKRIPQSESELRGCCPYSIPPLLKTYENEVLKL 509
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC----NPV 625
+ +Q ALR L +WRD IAR +DES YVLP ++++A+ IP+ + CC P+
Sbjct: 439 DEKQTLALRTLCRWRDEIARIEDESLVYVLPEKCMIEIAKRIPQSESELRGCCPYSIPPL 498
Query: 626 PQTVKEHVLDI 636
+T + VL +
Sbjct: 499 LKTYENEVLKL 509
>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 786
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 222/402 (55%), Gaps = 38/402 (9%)
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-----YDAIE---- 213
N+ + I++PQL+FK+ VDNS E F+P+L KPNAL P + D +E
Sbjct: 136 NEKSQRIQKPQLKFKIPVDNSEETPFKPRLTTKPNALVPFKDTMVNPEPVWEDTVEIIDP 195
Query: 214 -SFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ PYEYE+D E L EP S T + E + +++ ELK+ +EIA
Sbjct: 196 PYYAQPYEYEIDNQPYPEKVLTKSEPISPQDWSSTKATWVDTVEALNKMIEELKKSEEIA 255
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H++R+Y G CLMQIS RD+D+I+DTL LR++L LNEV T+ NIVKVFHGA D
Sbjct: 256 VDLEHHDFRTYYGIVCLMQISNRDQDWIIDTLALRDELTELNEVFTNPNIVKVFHGAFMD 315
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I WLQ+D GLY+V +FDT+ A + L + R SLAYLL+HY + K +QL DWR RPL
Sbjct: 316 IIWLQRDLGLYIVSLFDTYHASRALGLSRFSLAYLLEHYAQFKTSKKYQLADWRIRPLSS 375
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
P + YAR+DTH+LLY+YD +K L + + + +SR + K ++E F
Sbjct: 376 PMLAYARSDTHFLLYIYDQLKNKLIDS-----DKLRGVLHDSRQVAKRRFEYTKF--RPL 428
Query: 453 MNIFRSHAL-----LNNQQKYA---------------LRELYKWRDRIARDKDESTGYVL 492
N+F N ++ + + LYKWRD +AR +DES +++
Sbjct: 429 ANLFSKQVTCPVMAFNPKEPWGSIVSQYNVPPFKKPLVEVLYKWRDAMARKEDESVRFIM 488
Query: 493 PNH-MLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
PN ++ P D + N V V+ + +I +I
Sbjct: 489 PNQLLVSLSLLESPVDSIKVLNTPNFVTDAVRINAKEIAQLI 530
>gi|334188034|ref|NP_198440.2| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
Length = 870
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 213/348 (61%), Gaps = 26/348 (7%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I++PQ ++ + V+N+ +E ++ + ++ A+ PL EK+ ++
Sbjct: 195 IKKPQEEYNILVNNANLPFEHVWLERSEDDLRAMHPL----EKFSVLD------------ 238
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+V K+ + EP + LPL TP + E + + +LV++L+ +E A+DLE++ YRS+QG
Sbjct: 239 FVDKD--VNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQG 296
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +DYIVDT KLR + L E+ D KV HGAD DI WLQ+DFG+YV
Sbjct: 297 LTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYV 356
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L + R SL +LL+H+C V ++K +Q DWR RPLPE +YAR DTHY
Sbjct: 357 CNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHY 416
Query: 405 LLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL 461
LLY+YD +KL+L A + +L + S ++C YEK + E Y++++ A
Sbjct: 417 LLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAA 476
Query: 462 -LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
N Q + L +WRD IAR +DESTGYVLPN +LL++A+ +P +
Sbjct: 477 GFNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSV 524
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
N Q + L +WRD IAR +DESTGYVLPN +LL++A+ +P +
Sbjct: 479 NAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSV 524
>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 906
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 150/345 (43%), Positives = 203/345 (58%), Gaps = 30/345 (8%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ ++ VDN+ ++ F + + A+ PL L P E D
Sbjct: 201 IPRPQDVHRIVVDNTSKPFDHAFLERSDDGARAIHPLEKL------------PMEQLFDR 248
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP+ EP + L DTP + + + LV++LK E A+DLE+++YRS+QG
Sbjct: 249 RVPES------EPLKPPALDDTPFTFVEDRRTLEVLVTKLKSATEFAVDLEHNHYRSFQG 302
Query: 286 YTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D+IVDTLKLR L E L EV D KV HGA DI WLQ+DFG+YV
Sbjct: 303 LTCLMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYV 362
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L M R SL +LL+++C V ++K +Q DWR RPLP+ +YAR DTHY
Sbjct: 363 CNLFDTGQASRILQMDRNSLEHLLQYFCGVTANKEYQSADWRLRPLPDEMTKYAREDTHY 422
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL--- 461
LLY+YD M+L L + G +L+L S IC YEK + + Y+ I H L
Sbjct: 423 LLYIYDLMRLRLVNESSG-DDLLLEVCKRSNEICLQLYEKELLTDSSYLYI---HGLKEN 478
Query: 462 -LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
L+ +Q L LY+WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 479 DLSARQLAVLAGLYQWRDGVARAEDESTGYILPNKTLLEIAKQMP 523
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
+D + +Q L LY+WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 478 NDLSARQLAVLAGLYQWRDGVARAEDESTGYILPNKTLLEIAKQMP 523
>gi|393243266|gb|EJD50781.1| hypothetical protein AURDEDRAFT_159928 [Auricularia delicata
TFB-10046 SS5]
Length = 837
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 219/375 (58%), Gaps = 9/375 (2%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
I +PQLQFK VDN + + P L EK +A +PL + D+ + HPY YE+
Sbjct: 176 IHKPQLQFKPPVDN-FATSWRPALSEKAHAKRPLEEDGMEVDSGLPY-HPYRYEITHIEY 233
Query: 229 KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ + E P ++T P + Q++S+L+ +E+A+DLE+H+YR+Y G+ C
Sbjct: 234 ADHMFEAPELSPQKSFEAIPFTLVTTPHEFAQMLSKLRSAREMAVDLEHHSYRTYAGFLC 293
Query: 289 LMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
LMQISTR++D++VD L +RE++ L EV D+NIVKVFHGA+SDI WLQ+DF LY+V +F
Sbjct: 294 LMQISTREEDWVVDLLAVREEVPKLAEVFADENIVKVFHGAESDIVWLQQDFSLYIVNLF 353
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT+ A K L P+ SLA LL+ Y D DK +QL DWR RP+P + YAR+DTH+LL++
Sbjct: 354 DTYHASKVLEFPKHSLASLLEAYTDFTPDKRYQLADWRIRPIPAEMLLYARSDTHFLLHI 413
Query: 409 YDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE--GYMNIFRSHALLNNQQ 466
YD ++ L + G +L+ S Y ++ + N + A N+
Sbjct: 414 YDKLRELLLQRSSGTADLIREVLRRSEETALRTYVLETYDTQRGSGANGWEILAKKWNKG 473
Query: 467 KYAL-----RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 521
+ L + +++WRD +AR DEST YV+ N L ++A + P D+ + A +P+
Sbjct: 474 LHGLPLAVYKAVHEWRDTVARTTDESTRYVMGNSSLFKLADAQPTDMAQLTAALHPMSAI 533
Query: 522 VKEHVLDIHAIILKA 536
V++ D+ +I +A
Sbjct: 534 VRKRGKDLLNVISRA 548
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
+ +++WRD +AR DEST YV+ N L ++A + P D+ + A +P+ V++ D+
Sbjct: 483 KAVHEWRDTVARTTDESTRYVMGNSSLFKLADAQPTDMAQLTAALHPMSAIVRKRGKDLL 542
Query: 638 AIILKA 643
+I +A
Sbjct: 543 NVISRA 548
>gi|339252698|ref|XP_003371572.1| exosome component 10 [Trichinella spiralis]
gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
Length = 827
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 162/454 (35%), Positives = 244/454 (53%), Gaps = 26/454 (5%)
Query: 98 LTEANDKLLESINTRIDVMAGTKTP-----SVLPSQPKIVKESWNKNAKASNVWQEVHDN 152
+ + ND L E I + D + GT + + ++ SWN + S E
Sbjct: 99 IAKINDILDERITSSFDEVRGTSGEYLQDLRIERNAIEVATASWNCISAPSKEAVETERA 158
Query: 153 KKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKP--LAILLEKYD 210
+ ++ + I +PQL+F+ ++DNS F+ KL+ K + + P L+ L+++
Sbjct: 159 VENFSDEMHFHNKRRFIPKPQLKFRDQIDNSLNP-FKSKLRIKHHEISPEKLSSGLQQHA 217
Query: 211 AIESF------CHPYEYELDLYVPKEDFLKCEEPKQ-ALPLSDTPLMMITEPEQVTQLVS 263
HPY YE+ P L +EP+ +PL+ L LV+
Sbjct: 218 DNAGMEYSSEPAHPYYYEIITCEPNSLMLSIKEPQHPIMPLNACKL----------SLVN 267
Query: 264 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIV 323
+L QQ A+DLE+++YRSY G TCL+QISTRD DYIVD + ++ +LNE D NIV
Sbjct: 268 DLNSQQAFAVDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMYILNEPFVDPNIV 327
Query: 324 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF 383
KV HG+ DI+WLQ+DFG+YVV +FDT+ A + L MP++SL +L+K V+ DK++Q
Sbjct: 328 KVMHGSSQDIQWLQRDFGIYVVNLFDTYHAMEVLEMPQRSLKFLVKELVGVNLDKSYQTA 387
Query: 384 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE 443
DWR RPL + YAR+D+HYLLY +D ++ L + +L++ S + C Y+
Sbjct: 388 DWRIRPLGSKMLAYARSDSHYLLYCWDVLRNQLLNRGNEYNDLMMIVLKRSSDTCLQVYK 447
Query: 444 KPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 502
K NE + L+N+QKYALR LY WRD +AR DES Y++ N L +A
Sbjct: 448 KKFPNEFELRKLESKFPFNLDNRQKYALRMLYYWRDGVARITDESVYYIMRNETLRNLAA 507
Query: 503 SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
+PRD+Q + C P+ + H+ +I II A
Sbjct: 508 KLPRDMQLLENACKPITGALMPHLQEIQKIICDA 541
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 528 DIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRI 587
D+ I+LK + + +K P+ ++K + + P + +N+QKYALR LY WRD +
Sbjct: 429 DLMMIVLKRSSDTCLQVYKKKFPNEFELRKLESKF---PFNLDNRQKYALRMLYYWRDGV 485
Query: 588 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 643
AR DES Y++ N L +A +PRD+Q + C P+ + H+ +I II A
Sbjct: 486 ARITDESVYYIMRNETLRNLAAKLPRDMQLLENACKPITGALMPHLQEIQKIICDA 541
>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
Length = 831
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 171/531 (32%), Positives = 271/531 (51%), Gaps = 47/531 (8%)
Query: 31 KSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLY 90
KS+V K+ + + +P+ + S +++ L LL++ + +
Sbjct: 16 KSLVSTVKSVNRIAAEDLSFQRTVNPDAAEQLDDRSARMLHLSTRLLQSAAKACGVKAPR 75
Query: 91 LEGQKDI------LTEANDKLLESINTRIDVMAG---TKTPSVLPSQPKIVKESWNKNAK 141
LE +DI + + D +LE +T +D G K P + PK
Sbjct: 76 LEDSEDIDMSWQSIVDVVDSVLEKADTAMDEYTGLIKRKEPPSSDTGPKA---------- 125
Query: 142 ASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKP 201
K K + N I +PQ F+ K DN ++P L KP+A
Sbjct: 126 ----------KKTKPTGKLVRN---ANITKPQAMFEKKPDNFPTGPWKPILANKPHATVS 172
Query: 202 LA---ILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQV 258
L + D + HPYE E+ E + +P + P T + E V
Sbjct: 173 LEQSLLTAPGEDGTAQYKHPYETEISNMKYPEWVFQKRDPMPSQPPDSTKATWVDTYEGV 232
Query: 259 TQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVL 317
+++ EL++ +EIA+DLE+H++R+Y G CLMQ+STRD+D+IVDTL+ R LEVLN+V
Sbjct: 233 LEMLQELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDQDWIVDTLQPWRHKLEVLNDVF 292
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD 377
+ +IVKVFHGA D+ WLQ+D GLYV G+FDT+ AC L P +SLA+LL + D+D
Sbjct: 293 ANPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACDLLNYPGKSLAFLLSKFVGFDAD 352
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAAAHGKQNLVLSTFTNS 434
K +QL DWR RP+PE + YAR+DTHYLLY++D ++ ++ S + +++ + S
Sbjct: 353 KQYQLADWRIRPIPEEMLYYARSDTHYLLYIFDNVRNELIEASDKSDPEKDYINQALERS 412
Query: 435 RNICKLKYEKPVFNE------EGYMN-IFR-SHALLNNQQKYALRELYKWRDRIARDKDE 486
R + ++E P +NE G+ N +F+ SH LN +Q + L+KWRD AR +DE
Sbjct: 413 RELALSRHENPDYNETTGEGARGWYNYVFKHSHLALNGEQFSIFKALWKWRDETARQEDE 472
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
S +VL + ++A+ P D++ + + + + DI A + +A+
Sbjct: 473 SPNFVLGATNVTEIARVNPPDVKALHSLLPLTAPLARARLNDIWARVQEAK 523
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q + L+KWRD AR +DES +VL + ++A+ P D++ + +
Sbjct: 449 NGEQFSIFKALWKWRDETARQEDESPNFVLGATNVTEIARVNPPDVKALHSLLPLTAPLA 508
Query: 630 KEHVLDIHAIILKAR 644
+ + DI A + +A+
Sbjct: 509 RARLNDIWARVQEAK 523
>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 736
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 173/499 (34%), Positives = 265/499 (53%), Gaps = 54/499 (10%)
Query: 53 IASPNYISGVAGTSDKVMTLVDSLL------KTQNISKSMSKLYLEGQKDILTEANDKLL 106
+A P + + S+ V++L+D + +S + KL + Q+ + EA D LL
Sbjct: 71 MAFPAFRHQITRHSEAVVSLMDKFCQLLPAKRRVTLSSTGGKL-TDPQRAAVMEAADSLL 129
Query: 107 ESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGA 166
E+++ +D + G + L ++ ++ + K + Q V S+++ + N
Sbjct: 130 ENVDGLLDELKGRR----LSAKDQL-------SVKFGSELQGV----VPSSSYSVFNAAG 174
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD------AIESFCHPYE 220
V + RPQL F+ VDNS P +P+ YD E HP+
Sbjct: 175 VSVLRPQLTFEHPVDNS------------PTPFRPV-----YYDEKGVRHVGEPGVHPFA 217
Query: 221 YEL-DLYVPKEDFL-KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
+ + VP E L K E P L L PL + E + LV+ L + EIA+DLE+H
Sbjct: 218 ERIKAVSVPSEQLLLKTETPY--LSLVTCPLTFVDTVEDLEALVAVLLNETEIAVDLEHH 275
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
++ SYQG+TCLMQISTR +D+IVD LK+R ++ ++ V NIVKVFHGA D++WLQK
Sbjct: 276 DFYSYQGFTCLMQISTRTQDFIVDCLKVRANMYLMAPVFLQPNIVKVFHGAREDVRWLQK 335
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
DFGLY+V +FDT A + L MP SLA+ + H+C V +K +Q DWR RP+P + YA
Sbjct: 336 DFGLYIVNLFDTSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYA 394
Query: 399 RTDTHYLLYVYDCMK-LDLSAAAHGK-QNLVLSTFTNSRNICKLKYEKPVFNEEGYMN-- 454
+ DTH+LLYVYD +K L L+ A N++L F SR + +YEKP + +
Sbjct: 395 QQDTHFLLYVYDRLKQLLLNCEARASVGNMLLHVFQESRLLSLERYEKPHLDPDVTYKQA 454
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
+ RS L++ Q RE++ WRD AR+ D+S V+ +L +A +P + C
Sbjct: 455 LGRSLGGLSSSQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKC 514
Query: 515 CNPVPQTVKEHVLDIHAII 533
C+PV V+ +V+ + I+
Sbjct: 515 CSPVSVAVRTNVMKLLQIV 533
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 569 SNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 628
S++Q + A RE++ WRD AR+ D+S V+ +L +A +P + CC+PV
Sbjct: 463 SSSQLQVA-REIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVA 521
Query: 629 VKEHVLDIHAII 640
V+ +V+ + I+
Sbjct: 522 VRTNVMKLLQIV 533
>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
Length = 834
Score = 269 bits (687), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 214/349 (61%), Gaps = 27/349 (7%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I++PQ ++ + V+N+ +E ++ + ++ A+ PL EK+ ++
Sbjct: 158 IKKPQEEYNILVNNANLPFEHVWLERSEDDLRAMHPL----EKFSVLD------------ 201
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+V K+ + EP + LPL TP + E + + +LV++L+ +E A+DLE++ YRS+QG
Sbjct: 202 FVDKD--VNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQG 259
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +DYIVDT KLR + L E+ D KV HGAD DI WLQ+DFG+YV
Sbjct: 260 LTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYV 319
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L + R SL +LL+H+C V ++K +Q DWR RPLPE +YAR DTHY
Sbjct: 320 CNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHY 379
Query: 405 LLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL 461
LLY+YD +KL+L A + +L + S ++C YEK + E Y++++ A
Sbjct: 380 LLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAA 439
Query: 462 LNNQQKYALRE--LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
N + A+ L +WRD IAR +DESTGYVLPN +LL++A+ +P +
Sbjct: 440 GFNAAQLAIVAVGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSV 488
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
L +WRD IAR +DESTGYVLPN +LL++A+ +P +
Sbjct: 453 LCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSV 488
>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
Length = 703
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 178/527 (33%), Positives = 275/527 (52%), Gaps = 55/527 (10%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLL------K 78
LV A+ + + TK + + +A P + + S+ V++L+D +
Sbjct: 11 LVNGAFTLVKEYTKLTADL-AEEDYDYHMAFPAFRHQITRHSEAVVSLMDKFCQLLPAKR 69
Query: 79 TQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNK 138
+S + KL + Q+ + EA D LLE+++ +D + G + L ++ ++
Sbjct: 70 RVTLSSTGGKL-TDPQRAAVMEAADSLLENVDGLLDELKGRR----LSAKDQL------- 117
Query: 139 NAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNA 198
+ K + Q V S+++ + N V + RPQL F+ VDNS P
Sbjct: 118 SVKFGSELQGV----VPSSSYSVFNAAGVSVLRPQLTFEHPVDNS------------PTP 161
Query: 199 LKPLAILLEKYD------AIESFCHPYEYEL-DLYVPKEDFL-KCEEPKQALPLSDTPLM 250
+P+ YD E HP+ + + VP E L K E P L L PL
Sbjct: 162 FRPV-----YYDEKGVRHVGEPGVHPFAERIKAVSVPSEQLLLKTETPY--LSLVTCPLT 214
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ E + LV+ L + EIA+DLE+H++ SYQG+TCLMQISTR +D+IVD LK+R ++
Sbjct: 215 FVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRANM 274
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
++ V NIVKVFHGA D++WLQKDFGLY+V +FDT A + L MP SLA+ + H
Sbjct: 275 YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIALQNLHMP-HSLAFAVDH 333
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK-LDLSAAAHGK-QNLVL 428
+C V +K +Q DWR RP+P + YA+ DTH+LLYVYD +K L L+ A N++L
Sbjct: 334 FCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLLLNCEARASVGNMLL 393
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMN--IFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
F SR + +YEKP + + + RS L++ Q RE++ WRD AR+ D+
Sbjct: 394 HVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSPQLQVAREIFNWRDMAAREADD 453
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
S V+ +L +A +P + CC+PV V+ +V+ + I+
Sbjct: 454 SPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKLLQIV 500
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
RE++ WRD AR+ D+S V+ +L +A +P + CC+PV V+ +V+ +
Sbjct: 438 REIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKLL 497
Query: 638 AII 640
I+
Sbjct: 498 QIV 500
>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 826
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 228/398 (57%), Gaps = 39/398 (9%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY-------DAIES-----FC 216
I +PQL FK +DNS E+ F+PKL+ KPNAL+ L ++ + D++E +
Sbjct: 139 ITKPQLSFKTPIDNSEEEPFKPKLRTKPNALQSLELVSQLVNPEPVYEDSVEVVDPPFYR 198
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
HPYEYE+D L+ P Q + T + + EQ+ ++ ELK EIA+DLE
Sbjct: 199 HPYEYEIDKQPYPSAVLEKSTPIQPQEWTKTEAIWVDNEEQLDAMIEELKAASEIAVDLE 258
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
+H+YRSY G CLMQIS R+KD+++DTL LR++L LN + T+ IVKVFHGA DI WL
Sbjct: 259 HHDYRSYYGLVCLMQISNREKDWVIDTLALRDELSKLNVIFTNHEIVKVFHGAFMDIIWL 318
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+D GLY+V +FDT+ A + L + SL YLL + + K +QL DWR RPLP P +
Sbjct: 319 QRDLGLYIVSLFDTYHASRQLGFAKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPAPMLA 378
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVFNEEG- 451
YAR+DTH+LLY+YD ++ L Q+ + R + K ++E +P+ N G
Sbjct: 379 YARSDTHFLLYIYDQLRNKLI-----DQDKLSKVLFELRQVAKRRFEYTKYRPLSNTPGN 433
Query: 452 ---------------YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
+ +I + + + +K+ + LYK+RD +AR++DES Y++PN +
Sbjct: 434 GQVSCPIMASNPKEPWGSIMYQYN-VPSFKKHIVEVLYKYRDAVAREEDESVRYIMPNQL 492
Query: 497 LLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
L+ ++ P + + + C V + V+ H +I ++I
Sbjct: 493 LVSLSMLEAPVETEKVLNCHVYVSEHVRMHAKEIASLI 530
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKE 631
+K+ + LYK+RD +AR++DES Y++PN +L+ ++ P + + + C V + V+
Sbjct: 462 KKHIVEVLYKYRDAVAREEDESVRYIMPNQLLVSLSMLEAPVETEKVLNCHVYVSEHVRM 521
Query: 632 HVLDIHAII 640
H +I ++I
Sbjct: 522 HAKEIASLI 530
>gi|293334443|ref|NP_001170525.1| uncharacterized protein LOC100384536 [Zea mays]
gi|238005848|gb|ACR33959.1| unknown [Zea mays]
gi|414864884|tpg|DAA43441.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 666
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 208/345 (60%), Gaps = 24/345 (6%)
Query: 169 IERPQLQFKVKVDN--SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLY 226
I RPQ +K++VDN +E ++ + ++ + PL L P E +D
Sbjct: 87 IPRPQDVYKIRVDNYKPFEHVWLERSEDGTRRVHPLENL------------PVEQFVDRN 134
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
VP EP + L DTP ++ + + +T+L +LK E A+DLE++ YRS+QG
Sbjct: 135 VPDR------EPVKPADLEDTPFTLVQDHKGLTELAKKLKSVTEFAVDLEHNQYRSFQGL 188
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +D+IVDTLKLR + + L E D KV HGAD DI WLQ+DF +YV
Sbjct: 189 TCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVC 248
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT QA + L M R SL +LL H+C V + K +Q DWR RPLP+ I+YAR DTHYL
Sbjct: 249 NLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYL 308
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF--RSHALLN 463
LY+YD M+ L + + +L+L S IC YEK + + Y++I+ + H L+
Sbjct: 309 LYIYDLMRQRLQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHE-LD 367
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+Q + L++WRDRIAR +DESTGY+LPN L+++A+ +P D+
Sbjct: 368 ARQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDV 412
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
H+ + +Q + L++WRDRIAR +DESTGY+LPN L+++A+ +P D+
Sbjct: 364 HELDARQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDV 412
>gi|358394505|gb|EHK43898.1| hypothetical protein TRIATDRAFT_172602, partial [Trichoderma
atroviride IMI 206040]
Length = 816
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 165/515 (32%), Positives = 273/515 (53%), Gaps = 38/515 (7%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S+ F+ L + KS+V K+A S + +P+ + + +++ L LL
Sbjct: 4 SQDFNSLQEAIQKSLVSTVKSANRIASQDLSFQRTINPDVAEQLDDKTSRILDLSTRLLS 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+ + + + LE +D+ + + D +LE + ID G +V
Sbjct: 64 SAAQACGLKPIKLEDPEDVDMNWRAVVDVVDSILEKADRAIDEYTG------------LV 111
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
K+ N ++ +++ ++ K N +++PQL F+++ +N ++ ++P L
Sbjct: 112 KQRENGDSDSNSKAKQPKSTGKVIRN--------ANVKKPQLDFEIQPNNFFDGPWKPIL 163
Query: 193 KEKPNALKPL---AILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPL 249
EKP+A PL + + D + HPYE E+ + + ++P P T
Sbjct: 164 TEKPHATVPLDESLVTFVRNDGTTQYRHPYETEISSMQYPDRLFQIQDPILPQPDEATSA 223
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRE 308
+ E V ++ ELK+ +EIA+DLE+H++R+Y G L+QISTR+KD++VDTLK R
Sbjct: 224 TWVDTYEGVLAMLEELKEAKEIAVDLEHHDFRTYIGLVSLLQISTREKDWVVDTLKPWRH 283
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
L+VLNEV D IVKVFHGA D+ WLQ+D GLYV G+FDT A L +SLA+LL
Sbjct: 284 KLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFASDALHYSSRSLAFLL 343
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ + D+DK +QL DWR RPL E + YAR+DTHYLLY+YD ++ +L ++ ++LV
Sbjct: 344 SKFVNFDADKRYQLADWRIRPLSEEMMFYARSDTHYLLYIYDKIRNELVQSSDSDKHLVK 403
Query: 429 STFTNSRNICKLKYEKPVFNEE------GYMN-IFRSHALLNNQQKYAL-RELYKWRDRI 480
SR + ++E P N E G+ N + ++ L +++A+ R L+ WRD
Sbjct: 404 RVLERSRELSLSRHENPECNAETGEGSRGWFNFVLKNSQLGYKSEQFAIFRALWNWRDLT 463
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
AR +DE+ +VL N+ L ++ + P D + + +
Sbjct: 464 ARKEDENPNFVLGNNNLTEIVRVNPPDAKALHSLL 498
>gi|414864885|tpg|DAA43442.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 577
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 208/345 (60%), Gaps = 24/345 (6%)
Query: 169 IERPQLQFKVKVDN--SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLY 226
I RPQ +K++VDN +E ++ + ++ + PL L P E +D
Sbjct: 87 IPRPQDVYKIRVDNYKPFEHVWLERSEDGTRRVHPLENL------------PVEQFVDRN 134
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
VP EP + L DTP ++ + + +T+L +LK E A+DLE++ YRS+QG
Sbjct: 135 VPDR------EPVKPADLEDTPFTLVQDHKGLTELAKKLKSVTEFAVDLEHNQYRSFQGL 188
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +D+IVDTLKLR + + L E D KV HGAD DI WLQ+DF +YV
Sbjct: 189 TCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVC 248
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT QA + L M R SL +LL H+C V + K +Q DWR RPLP+ I+YAR DTHYL
Sbjct: 249 NLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYL 308
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF--RSHALLN 463
LY+YD M+ L + + +L+L S IC YEK + + Y++I+ + H L+
Sbjct: 309 LYIYDLMRQRLQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHE-LD 367
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+Q + L++WRDRIAR +DESTGY+LPN L+++A+ +P D+
Sbjct: 368 ARQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDV 412
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
H+ + +Q + L++WRDRIAR +DESTGY+LPN L+++A+ +P D+
Sbjct: 364 HELDARQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDV 412
>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
gambiense DAL972]
Length = 738
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 172/499 (34%), Positives = 265/499 (53%), Gaps = 54/499 (10%)
Query: 53 IASPNYISGVAGTSDKVMTLVDSLL------KTQNISKSMSKLYLEGQKDILTEANDKLL 106
+A P + + S+ V++L+D + +S + KL + Q+ + EA D LL
Sbjct: 71 MAFPAFRHQITRHSEAVVSLMDKFCQLLPAKRRVTLSSTGGKL-TDPQRAAVMEAADSLL 129
Query: 107 ESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGA 166
E+++ +D + G + L ++ ++ + K + Q V S+++ + N
Sbjct: 130 ENVDGLLDELKGRR----LSAKDQL-------SVKFGSELQGV----VPSSSYSVFNAAG 174
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD------AIESFCHPYE 220
V + RPQL F+ VDNS P +P+ YD E HP+
Sbjct: 175 VSVLRPQLTFEHPVDNS------------PTPFRPV-----YYDEKGVRHVGEPGVHPFA 217
Query: 221 YEL-DLYVPKEDFL-KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
+ + VP E L K E P L L PL + E + +V+ L + EIA+DLE+H
Sbjct: 218 ERIKAVSVPSEQLLLKTETPY--LSLVTCPLTFVDTVEDLEAVVAVLLNETEIAVDLEHH 275
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
++ SYQG+TCLMQISTR +D+IVD LK+R ++ ++ V NIVKVFHGA D++WLQK
Sbjct: 276 DFYSYQGFTCLMQISTRTQDFIVDCLKVRANMYLMAPVFLQPNIVKVFHGAREDVRWLQK 335
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
DFGLY+V +FDT A + L MP SLA+ + H+C V +K +Q DWR RP+P + YA
Sbjct: 336 DFGLYIVNLFDTSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYA 394
Query: 399 RTDTHYLLYVYDCMK-LDLSAAAHGK-QNLVLSTFTNSRNICKLKYEKPVFNEEGYMN-- 454
+ DTH+LLYVYD +K L L+ A N++L F SR + +YEKP + +
Sbjct: 395 QQDTHFLLYVYDRLKQLLLNCEARASVGNMLLHVFQESRLLSLERYEKPHLDPDVTYKQA 454
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
+ RS L++ Q RE++ WRD AR+ D+S V+ +L +A +P + C
Sbjct: 455 LGRSLGGLSSSQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKC 514
Query: 515 CNPVPQTVKEHVLDIHAII 533
C+PV V+ +V+ + I+
Sbjct: 515 CSPVSVAVRTNVMKLLQIV 533
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 569 SNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 628
S++Q + A RE++ WRD AR+ D+S V+ +L +A +P + CC+PV
Sbjct: 463 SSSQLQVA-REIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVA 521
Query: 629 VKEHVLDIHAII 640
V+ +V+ + I+
Sbjct: 522 VRTNVMKLLQIV 533
>gi|344234698|gb|EGV66566.1| hypothetical protein CANTEDRAFT_128954 [Candida tenuis ATCC 10573]
Length = 737
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 219/392 (55%), Gaps = 30/392 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL-----AILLEKYDAIE-----SFCHP 218
+E+PQL+F + VDNS F+PKL KPNAL P + E D + + HP
Sbjct: 121 MEKPQLEFSIPVDNSELNPFKPKLTSKPNALIPFEESVKLVQPENSDGSDIVDPPFYPHP 180
Query: 219 YEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
YEYE+D + + +P + P T + I +PEQ+ +LV+EL EIA+DLE+H
Sbjct: 181 YEYEIDNQPYRNSIISKCDPIPSNPWESTNAIWIDQPEQIDELVNELSNSSEIAVDLEHH 240
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
+YR+Y G CLMQISTR KD+I+DTL LR+DL+ LN V T+ IVKVFHGA DI WLQ+
Sbjct: 241 DYRTYYGLVCLMQISTRKKDWIIDTLALRDDLQKLNVVFTNPQIVKVFHGAFMDIIWLQR 300
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
D GLY+V +FDT+ A K L P+ SLAYLL+ + + K +QL DWR RPL + YA
Sbjct: 301 DLGLYIVSLFDTYHASKKLGFPKFSLAYLLETFAKFKTSKKYQLADWRIRPLSTSMLAYA 360
Query: 399 RTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS 458
R+DTH+LL ++D +K L +GK VL +SR + K ++E F ++
Sbjct: 361 RSDTHFLLNIFDHLKNKLIDQGNGKMQSVLH---DSRLVAKRRFEYTKFRPLKGTSLVTC 417
Query: 459 HALLNN----------------QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 502
+ +N K + LY WRD +AR DES Y++ N L +A
Sbjct: 418 PVMSSNPLEPFLPIVVQYNIPYHIKPVVEVLYNWRDNLARQFDESVRYIMSNQALALLAT 477
Query: 503 -SIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
S P D + I + + ++++ ++ +I
Sbjct: 478 LSRPVDPKKILSIPTFITDFIRKNADELAFLI 509
>gi|340518928|gb|EGR49168.1| predicted protein [Trichoderma reesei QM6a]
Length = 818
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 174/544 (31%), Positives = 283/544 (52%), Gaps = 43/544 (7%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S+ F+ L + K+++ K+A S +P+ + + +++ L LL
Sbjct: 4 SQDFNSLQEGIQKALISTIKSANRIASHDLAFQRTVNPDVAEQLDDQTSRILDLSTRLLS 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+ + + LE +D+ + + D +LE + +D G ++
Sbjct: 64 SAAKACGVKAPKLEDPEDVDMNWRKVVDVVDSVLEKADRALDEYTG------------LI 111
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
K+ N ++ +++ ++ K N +++PQL F++ +N + ++P L
Sbjct: 112 KQRDNGDSDSNSKTKQAKSTSKVIRN--------ANVKKPQLDFEIPPNNFPDGPWKPLL 163
Query: 193 KEKPNALKPLAILLEKY---DAIESFCHPYEYE-LDLYVPKEDFLKCEEPKQALPLSDTP 248
EKP+A PL L + + + HPYE E L + P F + +P P+ T
Sbjct: 164 TEKPHAKVPLEDSLVTFVGDNGTTQYKHPYEPEILSMQYPDRVF-QVLDPIPPQPVETTS 222
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LR 307
+ E V +++ ELKQ +EIA+DLE+H++R+Y G L+QISTR+KD+IVDTLK R
Sbjct: 223 ATWVDTYEGVLEMLQELKQAKEIAVDLEHHDFRTYIGLVSLLQISTREKDWIVDTLKPWR 282
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
L+VLNEV D IVKVFHGA D+ WLQ+D GLYV G+FDT A L +SLA+L
Sbjct: 283 HKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFASDALHYSSRSLAFL 342
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQ 424
L + + D+DK +QL DWR RP+PE + YAR+DTH+LLY+YD ++ DL S ++ +
Sbjct: 343 LSKFVNFDADKRYQLADWRIRPIPEEMLFYARSDTHFLLYIYDKIRNDLVQVSDRSNPDK 402
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF--RSHALLNNQQKYALRELYKW 476
+L+ SR + ++E P FNEE G+ N SH ++Q R L+KW
Sbjct: 403 DLIGRVLEKSRELSLSRHEHPEFNEETGEGSRGWYNFVLKNSHLGYKSEQFAVFRALWKW 462
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RD AR +DE+ +VL + L+ +A++ P D + + + + V +I + I +
Sbjct: 463 RDVTARTEDENPNFVLGTNNLVDIARANPPDAKALHSLLPLTAALARSRVNEIWSQIQEL 522
Query: 537 RLQS 540
+ Q
Sbjct: 523 KAQG 526
>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
Length = 681
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 177/496 (35%), Positives = 265/496 (53%), Gaps = 46/496 (9%)
Query: 20 KTFDVLVQNAY-KSIVKCTKTAQSFPSTHENSLLIASPNY---ISGVAGTSDKVMTLVDS 75
K+ + L+ ++ ++ K + ++++ P+ + L S + I +A TS V
Sbjct: 10 KSLEALIGGSFPANLSKLSSSSRTIPTNRDFHSLYKSDEFKRPIDEIARTSQCV------ 63
Query: 76 LLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKES 135
L+T KSM+ + + L + ND++LE + ID + + K++
Sbjct: 64 -LETIGGKKSMTFPGDDDAYESLVKVNDEILEKFDDSIDEFKRNR------KMEEDSKKA 116
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
+ SN E H K F L I +PQ ++K+ V+N
Sbjct: 117 IDVKVAESNKRFEKHGKAKAP---FHLPT----ITKPQEEYKILVEN------------- 156
Query: 196 PNALKPL-AILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITE 254
A KP +LLEK + F HP E +L + + L P + LPL +TP ++ E
Sbjct: 157 --ANKPFDHVLLEKSEDGLRFVHPLE-KLSVMDFVDKNLTEIIPVKPLPLEETPFKLVDE 213
Query: 255 PEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV-L 313
+ + L + L+ +E A+DLE++ YRS+QG TCLMQISTR +DYIVDT KL + + L
Sbjct: 214 VKDLEDLAATLQSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLWDHIGPHL 273
Query: 314 NEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCD 373
E+ D KV HGAD DI WLQ+DFG+YV +FDT QA + L + R+SL +LLKHYC
Sbjct: 274 RELFKDPKKKKVMHGADHDIIWLQRDFGIYVCNLFDTGQASRVLKLERKSLEFLLKHYCG 333
Query: 374 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ---NLVLST 430
V +DK +Q DWR RPLP+ +YAR DTHYLLY+YD M++DL A + + ++
Sbjct: 334 VAADKQYQNADWRIRPLPDVMTRYAREDTHYLLYIYDVMRIDLHTMAKEDEQSDSPLVEA 393
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTG 489
+ S ++C YEK + + Y++ + + LN Q + L +WRDRIAR DESTG
Sbjct: 394 YKGSYDVCMQLYEKELLTGDSYLHTYGVRSGNLNAVQLSIVAGLCEWRDRIARADDESTG 453
Query: 490 YVLPNHMLLQMAQSIP 505
YVLPN L +A+ +P
Sbjct: 454 YVLPNKTLFDIAKDMP 469
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N Q + L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 427 NAVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKDMP 469
>gi|414871320|tpg|DAA49877.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 901
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 148/345 (42%), Positives = 200/345 (57%), Gaps = 29/345 (8%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ + + VDNS +E + + ++ + PL L P E +
Sbjct: 198 IPRPQDVYCIVVDNSSKPFEHILLDRSEDGTRVVHPLEKL------------PVEQIISR 245
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP EP + L +TP + + + + L ++LK E A+DLE+++YRS+QG
Sbjct: 246 NVPDN------EPVKPPALDNTPFTFVEDLKTLEVLATKLKDATEFAVDLEHNHYRSFQG 299
Query: 286 YTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D+IVDTLKLR+ L + L E D KV HGA DI WLQ+DF +YV
Sbjct: 300 LTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYV 359
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA K L M R SL +LL H+C V ++K +Q DWR RPLP+ I+YAR DTHY
Sbjct: 360 CNLFDTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHY 419
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL--- 461
LLY+YD M+L L + + +L+L S IC YEK + Y++I H L
Sbjct: 420 LLYIYDLMRLRLVNGSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHI---HGLKEN 476
Query: 462 -LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
LN Q L LY+WRD IAR +DESTGY+LPN LL++A+ +P
Sbjct: 477 ELNATQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMP 521
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N Q L LY+WRD IAR +DESTGY+LPN LL++A+ +P
Sbjct: 479 NATQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMP 521
>gi|358058978|dbj|GAA95376.1| hypothetical protein E5Q_02030 [Mixia osmundae IAM 14324]
Length = 768
Score = 265 bits (678), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 253/478 (52%), Gaps = 71/478 (14%)
Query: 103 DKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFML 162
D LLE+ + ++D+++G P L + ++ ++ AS ++
Sbjct: 97 DHLLEAADAQLDLLSGRHKPKPL----QTTSQTTDQRLPAS-----------------LM 135
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYE 222
N A ++E+PQ+ F V+N+ QLF P L KP+AL +A YD ES +PY +E
Sbjct: 136 N--AKDLEKPQIHFSRPVNNARGQLFRPLLTSKPHAL--VAYDPATYDTSES--NPYSHE 189
Query: 223 LDLY--VPKEDFLKCEEPKQAL-PLSDTPLMMITEPEQVTQLVSELKQ--QQEIAIDLEY 277
++ + D L E K+A+ S TP + EQ+ +L+ ELK+ EIAIDLE+
Sbjct: 190 IEALPLLASPDNLPSEISKKAIDSFSSTPFTYVDTAEQLDRLLQELKRPDHAEIAIDLEH 249
Query: 278 HNYRSYQGYTCLMQISTRDKDYIVDTL--KLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
H++RSY G+ CLMQISTR D+IVDTL ++R+ LE LNEV D VKV HGA SD+ W
Sbjct: 250 HDFRSYVGFVCLMQISTRSHDWIVDTLVSEVRDRLESLNEVFADPAKVKVMHGAQSDVIW 309
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+DFGLY+V +FDT+ A L ++SLA LL Y DK +QL DWR RPLP+ I
Sbjct: 310 LQRDFGLYIVNLFDTYHATVVLSYGQRSLASLLTKYTHFVPDKRYQLADWRLRPLPQEMI 369
Query: 396 QYARTDTHYLLYVYDCMKLDLSA---------AAHGKQNLVLSTFTNSRNICKLKYEKPV 446
YAR+DTHYLL +YD ++ L A A G + L+ SR + Y
Sbjct: 370 DYARSDTHYLLNIYDHLRRALIATKLDPTPEHALDGSETLLQRVDRRSRIVASQAYHGSD 429
Query: 447 FNEE------GYMNIFRSHALLNNQQKY------------------ALRELYKWRDRIAR 482
++ E G+ + R ++N +Y A R + WRD++AR
Sbjct: 430 YDYESGLGANGWRGLVR---VMNKGAEYRVNLAKGETSSGRGPEFAAFRAAHSWRDQLAR 486
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
+ DES Y++ +H++ ++ P + ACC+ QTV ++ A ++KA L +
Sbjct: 487 ELDESPRYIMSHHLVCRLGTVRPTRPADVLACCSVASQTVLRRASEL-AQVIKAALDT 543
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 635
A R + WRD++AR+ DES Y++ +H++ ++ P + ACC+ QTV +
Sbjct: 473 AFRAAHSWRDQLARELDESPRYIMSHHLVCRLGTVRPTRPADVLACCSVASQTVLRRASE 532
Query: 636 IHAIILKARL 645
+ A ++KA L
Sbjct: 533 L-AQVIKAAL 541
>gi|358385873|gb|EHK23469.1| hypothetical protein TRIVIDRAFT_123406, partial [Trichoderma virens
Gv29-8]
Length = 821
Score = 265 bits (677), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 170/520 (32%), Positives = 270/520 (51%), Gaps = 41/520 (7%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E S+ F+ L + KS++ K+A S + +P+ + + +++ L L
Sbjct: 2 ESSQDFNSLQEEVQKSLISTIKSANRIASHDLSFQRTVNPDVAEQLDDKTSRILDLSTRL 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L + + + LE +D+ + + D +LE + ID G
Sbjct: 62 LNSAARACGLKPPKLEDPEDVDMNWRKVVDVVDSVLEKADRAIDEYTG------------ 109
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+VK+ N ++ +++ ++ K N +++PQL F++K +N + ++P
Sbjct: 110 LVKQRENGDSDSNSKAKQTKPTGKVIRN--------ANVKKPQLDFELKPNNFPDGPWKP 161
Query: 191 KLKEKPNA---LKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
L EKP+A L + + + HPYE E+ + + ++P P+ T
Sbjct: 162 LLTEKPHADVSLDDSLVTFVADNGAPQYKHPYEAEISSMQYPDRVFQIQDPMPPQPVEST 221
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-L 306
+ E V ++ ELK+ +EIA+DLE+H++R+Y G LMQISTR+KD+IVDTLK
Sbjct: 222 AATWVDTYEGVVDMLQELKKAKEIAVDLEHHDFRTYIGLVSLMQISTREKDWIVDTLKPW 281
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
R L+VLNEV D IVKVFHGA D+ WLQ+D GLYV G+FDT A + L +SLA+
Sbjct: 282 RHKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFASEALHYSSRSLAF 341
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD---LSAAAHGK 423
LL + + ++DK +QL DWR RPLPE + YAR+DTHYLLY+YD ++ D LS ++
Sbjct: 342 LLSKFVNFEADKRYQLADWRIRPLPEEMMYYARSDTHYLLYIYDKIRNDLVQLSDRSNPD 401
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF--RSHALLNNQQKYALRELYK 475
++L+ SR + ++E FNEE G+ N SH + Q R L+K
Sbjct: 402 KDLISIVLEKSRGLSLSRHENLEFNEETGEGSRGWYNFVLKNSHFGYKSDQFAIFRALWK 461
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
WRD AR +DE+ +VL L ++A++ P D + +
Sbjct: 462 WRDVTARTEDENPNFVLGTSNLTEIARANPPDAKAFHSLL 501
>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
Length = 332
Score = 265 bits (677), Expect = 1e-67, Method: Composition-based stats.
Identities = 129/299 (43%), Positives = 189/299 (63%), Gaps = 9/299 (3%)
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
TP + + PE + +V+ L + E+A+DLE+H+YRS+QG+TC++Q+STR D++VD L+L
Sbjct: 33 TPCVFVDTPEALEDMVAHLDKSNEMAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALEL 92
Query: 307 REDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
R + + L V+ D ++KVFHGAD D++WLQ+DFG+YVVGMFDT QA + L +P + LA
Sbjct: 93 RGLIRDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMFDTGQAARVLELPSKGLA 152
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK-- 423
YLL HYC V +DK FQL DWR RPL E I YAR DTH+LLYVYD ++ L A G
Sbjct: 153 YLLDHYCSVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGDGS 212
Query: 424 ---QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH---ALLNNQQKYALRELYKWR 477
++L+ +T SR++C YEKPV + Y +R + L+ + L+ WR
Sbjct: 213 KPFRDLIRTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRDAGDLDLPRLAVYAALHGWR 272
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
D R +DES GYV+P ++L++A+ P + + + A V +H ++ II +A
Sbjct: 273 DERCRAEDESIGYVMPRALMLRLAREAPTNPRALLAVTRGDSPLVAKHSGELVDIISRA 331
Score = 44.3 bits (103), Expect = 0.34, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI 639
L+ WRD R +DES GYV+P ++L++A+ P + + + A V +H ++ I
Sbjct: 268 LHGWRDERCRAEDESIGYVMPRALMLRLAREAPTNPRALLAVTRGDSPLVAKHSGELVDI 327
Query: 640 ILKA 643
I +A
Sbjct: 328 ISRA 331
>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
Length = 578
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 213/348 (61%), Gaps = 26/348 (7%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I++PQ ++ + V+N+ +E ++ + ++ A+ PL EK+ ++
Sbjct: 195 IKKPQEEYNILVNNANLPFEHVWLERSEDDLRAMHPL----EKFSVLD------------ 238
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+V K+ + EP + LPL TP + E + + +LV++L+ +E A+DLE++ YRS+QG
Sbjct: 239 FVDKD--VNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQG 296
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +DYIVDT KLR + L E+ D KV HGAD DI WLQ+DFG+YV
Sbjct: 297 LTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYV 356
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L + R SL +LL+H+C V ++K +Q DWR RPLPE +YAR DTHY
Sbjct: 357 CNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHY 416
Query: 405 LLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL 461
LLY+YD +KL+L A + +L + S ++C YEK + E Y++++ A
Sbjct: 417 LLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAA 476
Query: 462 -LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
N Q + L +WRD IAR +DESTGYVLPN +LL++A+ +P +
Sbjct: 477 GFNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSV 524
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
N Q + L +WRD IAR +DESTGYVLPN +LL++A+ +P +
Sbjct: 479 NAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSV 524
>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
Length = 827
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 178/550 (32%), Positives = 279/550 (50%), Gaps = 42/550 (7%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S+ L + ++V T++ + + P+ + + +D+++ L +LK
Sbjct: 4 SQNLKPLRDRVHSTLVTVTRSVNTLANEDLQFQRTVHPSVAARLDQNTDRLLELARGVLK 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+ + + + LE D+ + + D LLE +T +D G +V
Sbjct: 64 SASKFTAQREPQLEDVDDVEIQWKGVLDVIDSLLEKSDTCLDEYTG------------LV 111
Query: 133 KESWNKNAKASNVWQEVHDNKKKS--ANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
K K+A ++ K + +W M I +PQ F+ K+DN ++P
Sbjct: 112 K---RKDAPTPESGRDTKRPKSTTDRLDWSMKR---ANILKPQNTFEKKIDNFESGPWKP 165
Query: 191 KLKEKPNALKPLAILLE---KYDAIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSD 246
L KP+A PL L + + HPY+ E+ D+ P F K EP PL
Sbjct: 166 LLTSKPHAQTPLDASLTISVNDEGRPQYEHPYKQEIIDMQYPDHVF-KSREPIGYPPLEK 224
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL-K 305
T + + E V +++ ELK+ EIAIDLE+H++RSY G LMQISTR+KD+I+DTL
Sbjct: 225 TTAIWVDTYEGVLEMLEELKKAPEIAIDLEHHDFRSYTGLLSLMQISTREKDWIIDTLVP 284
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
R LEVLNEV D IVKV HGA DI WLQ+D GLYVVG+FDT A L +SLA
Sbjct: 285 WRHKLEVLNEVFADPKIVKVLHGAFMDIIWLQRDLGLYVVGLFDTFYASTALQYAGKSLA 344
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS--AAAHGK 423
+LLK + D D+DK +QL DWR RPLPE YAR+DTH+LLY+YD ++ +L+ A +G
Sbjct: 345 FLLKKFVDFDADKKYQLADWRLRPLPEEMFYYARSDTHFLLYIYDMLRNELAQLATQNGS 404
Query: 424 QNLVLS-TFTNSRNICKLKYEKPVFNEEG-------YMNIFRSHALLNNQQKYALRELYK 475
S+ + +YE + E + + +S L +++Q + ++K
Sbjct: 405 DGHPTDRVIQKSKEVALQRYENSFCDPETGAGNRGWHATLTKSSTLYDSEQFAVYKAVHK 464
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
WRD IAR +DES +++ +L +A+ +P D++ +++ +K + ++ II +
Sbjct: 465 WRDDIARQEDESPFFIMTQQVLSNIARIMPTDMKALWSLLESNTGALKSRLGELFKIITE 524
Query: 536 ARLQSLTKPV 545
A+ Q P
Sbjct: 525 AKAQGANGPT 534
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 46/83 (55%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q + ++KWRD IAR +DES +++ +L +A+ +P D++ +++ +
Sbjct: 452 DSEQFAVYKAVHKWRDDIARQEDESPFFIMTQQVLSNIARIMPTDMKALWSLLESNTGAL 511
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
K + ++ II +A+ Q P
Sbjct: 512 KSRLGELFKIITEAKAQGANGPT 534
>gi|367005124|ref|XP_003687294.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
gi|357525598|emb|CCE64860.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
Length = 743
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 223/394 (56%), Gaps = 23/394 (5%)
Query: 165 GAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYE 220
+ +PQL F V VDNS F P L +KPNA+ PL +L+ D E + PYE
Sbjct: 122 NVTRLSKPQLNFSVPVDNSETHPFRPLLTDKPNAVVPLDEVLKIVDGTEDTPQHYPQPYE 181
Query: 221 YELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNY 280
E+D E L+ +P + +T + + E + +++ELK E+A+DLE+H++
Sbjct: 182 TEIDKQEYNEQVLQFSDPIPSKVWEETEAIWVDNEESLAAMLNELKTATELAVDLEHHDF 241
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
RSY G TCLMQISTR+ DY+VDT+ LR+ L+VLN V TD I K+ HGA DI WLQ+D
Sbjct: 242 RSYYGITCLMQISTRNTDYLVDTIALRDKLQVLNVVFTDPKITKILHGAFMDIIWLQRDL 301
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
GLY+V +FDT+ A + L PR SLAYLL+ + + K +QL DWR RPL + YAR
Sbjct: 302 GLYIVSLFDTYHASRALGFPRHSLAYLLERFAHFKTSKQYQLADWRTRPLSKAMNAYARA 361
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KP------VFNEE 450
DTH+LL ++D ++ L +++ + S SR + K ++E KP VF+
Sbjct: 362 DTHFLLNIFDQLRNMLI-----QEDKLASMLHESRKVAKRRFEYSKYKPTLPSSAVFSPT 416
Query: 451 GYMNIFRSHALLNN---QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
+RS N Q+ ++ L++WRD IAR DES Y++PN ++ + + +P +
Sbjct: 417 ESDMPWRSMIYQYNIPSQKVELVKRLWEWRDTIARRDDESPRYIMPNQLIASLVEYVPTN 476
Query: 508 IQGIFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
G+ + + V+ + I A ++K+ L+ +
Sbjct: 477 PAGVISVNRMMTDPVRSNAKAI-ANLIKSTLEDM 509
Score = 46.2 bits (108), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
++ L++WRD IAR DES Y++PN ++ + + +P + G+ + + V+ + I
Sbjct: 439 VKRLWEWRDTIARRDDESPRYIMPNQLIASLVEYVPTNPAGVISVNRMMTDPVRSNAKAI 498
Query: 637 HAIILKARLQPL 648
A ++K+ L+ +
Sbjct: 499 -ANLIKSTLEDM 509
>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
Length = 512
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 187/288 (64%), Gaps = 6/288 (2%)
Query: 236 EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR 295
+EP + LS+TPL ++ + + ++L+ EIA+DLE H+YRS+QG+ CLMQ+STR
Sbjct: 211 DEPVKPKSLSETPLFIVESLPALETMAAKLRASSEIAVDLENHHYRSFQGFVCLMQVSTR 270
Query: 296 DKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
+D+IVDTL LR + VL V + +I KV HG+D DI WLQ+DFG+YV +FDT QA
Sbjct: 271 SQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAA 330
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ L M R LA+LL+ +C+V DK +QL DWR RPL ++YAR DTHYLLYVYD MK
Sbjct: 331 RVLRMERFGLAFLLQTFCEVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMK- 389
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALREL 473
L A ++L L SR++C YEK +F E +++I+ + L ++ + L
Sbjct: 390 GLLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTPEKLAIVAGL 449
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI---QGIFACCNPV 518
Y WRD++ R +DESTGY+LPN +L ++A+ P+D+ QGI +PV
Sbjct: 450 YAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDVKRLQGILRRGHPV 497
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI---QGIFACCNPV 625
LY WRD++ R +DESTGY+LPN +L ++A+ P+D+ QGI +PV
Sbjct: 449 LYAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDVKRLQGILRRGHPV 497
>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
Length = 431
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 162/405 (40%), Positives = 225/405 (55%), Gaps = 49/405 (12%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 32 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 91
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 92 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 151
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 152 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 201
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 202 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 261
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 262 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 321
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 322 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 381
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR R
Sbjct: 382 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIR 426
>gi|448119348|ref|XP_004203709.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359384577|emb|CCE78112.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 756
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 250/465 (53%), Gaps = 54/465 (11%)
Query: 98 LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV----KESWNKNAKASNVWQEVHDNK 153
+T D L E + ++D ++ T PS +++ KE N N+ S
Sbjct: 87 ITNTIDHLFEKADIKLDELSRTSAGKSEPSDSQLMYLDDKEVLNNNSNVS---------- 136
Query: 154 KKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNAL----KPLAILLEKY 209
+ +PQ F+ KVD + + F+PK+ KPNAL + L +
Sbjct: 137 ----------YPTKVMTKPQDSFRFKVDTTEKSSFKPKISYKPNALVSYDESLRLRNAGD 186
Query: 210 DAIESFC-HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
D SF PYEYE+D E ++ +EP +A +T I + + ++V EL+
Sbjct: 187 DGDFSFYPQPYEYEIDNQPYPEFVIQKKEPIEAQSWKETSATWIDSKDGLLRMVDELRSS 246
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
EIA+DLE+H+YRSY G CLMQIS R D++VDTL LR+DLEVLNE+ T+ I+KVFHG
Sbjct: 247 TEIAVDLEHHDYRSYYGLVCLMQISNRQNDWLVDTLALRDDLEVLNEIFTNPQILKVFHG 306
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
A DI WLQ+D GLY+V +FDT+ A K L + + SLAYLL+ + + K +QL DWR R
Sbjct: 307 AFMDIIWLQRDLGLYIVSLFDTYHAAKKLGLSKFSLAYLLESFAKFKTSKKYQLADWRLR 366
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----K 444
PL YAR+DTH+LLY+YD M+ L GK VL SR + K ++E +
Sbjct: 367 PLSPAMKAYARSDTHFLLYIYDQMRNKL-LENDGKLQEVL---YESRQVAKRRFEYTKFR 422
Query: 445 PVFNEEGYMNIFRSHALLNNQQKYA---------------LRELYKWRDRIARDKDESTG 489
P+ + + ++ + N ++ Y+ + L++WRDR+A+ +DES
Sbjct: 423 PISSTTTAL-VYSPLMVSNPREPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKRQDESVR 481
Query: 490 YVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
Y++PN +L+ +A + P D Q + A + V ++V+ H +I ++
Sbjct: 482 YIMPNQLLVTLASLNHPVDAQKVIAASSYVTESVRTHAEEIANLL 526
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 19/228 (8%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHA 638
L++WRDR+A+ +DES Y++PN +L+ +A + P D Q + A + V ++V+ H +I A
Sbjct: 465 LFEWRDRVAKRQDESVRYIMPNQLLVTLASLNHPVDAQKVIAASSYVTESVRTHAEEI-A 523
Query: 639 IILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPVFPNNIICAP 698
+L L+ + K +L ++ Q P S+D + VF N +
Sbjct: 524 NLLDMTLKQIEKQDWELMNNI--------YDQNEPYRHSIDSVTVLKDQNVF--NKLYRK 573
Query: 699 SNTHLSSYDPQDKKIAQIGLFFEDKMKIGSN---KYQKIK-LKTSRFETPYQRFLKSKEY 754
+ ++ D QD + LF E I +N Y K K T+ + + +++
Sbjct: 574 CSKLFTTID-QDILRQKSVLFSEKIQGIANNFSVSYDKGKPTSTTTLDICNRINFVRQQF 632
Query: 755 AKAIQEKVDKENAEQKKIDALTPQ-VKTEPEENVKITQEPVVLKQIKS 801
+ QEKV + N QK L V T E K ++P + ++KS
Sbjct: 633 KEMYQEKV-QPNILQKDTTTLREAPVHTPAEVQAKPREDPAEIIKLKS 679
>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Komagataella pastoris CBS 7435]
Length = 717
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 223/389 (57%), Gaps = 25/389 (6%)
Query: 164 KGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA----ILLEKYDAIESFCHPY 219
K + ++ +PQ+++ +DN+ F P L +K N++ P ++ E D + HPY
Sbjct: 123 KSSKDMIKPQIEYNYPIDNTESNPFRPLLNQKYNSVVPFEEVHKLVPETDDNPQHHNHPY 182
Query: 220 EYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHN 279
E+E++ + L+ EP P T + + +QV ++ L + IA+DLE+H+
Sbjct: 183 EFEINSQEYPKWILERREPIVNQPWESTTAIYVETEQQVGDMIDTLSKADVIAVDLEHHD 242
Query: 280 YRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKD 339
R+Y G CLMQISTR++DYIVDTLKLR L+ LN+V TD +IVKVFHGA DI WLQ+D
Sbjct: 243 LRTYYGLVCLMQISTRNQDYIVDTLKLRFKLQPLNKVFTDPSIVKVFHGAFMDIIWLQRD 302
Query: 340 FGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYAR 399
GLYVV +FDT A K L P+ SLAYLL+ Y + K +QL DWR RPL +P + YAR
Sbjct: 303 LGLYVVSLFDTFHASKLLGFPKHSLAYLLETYAKFKTSKKYQLADWRVRPLTKPLLAYAR 362
Query: 400 TDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVF-------- 447
+DTH+LLY++D +L+ GK + VL +SR + ++E +P F
Sbjct: 363 SDTHFLLYIFD--QLNNMLIESGKLSQVL---YDSRQVALRRFEYTKFRPNFPTPLVVSP 417
Query: 448 ---NEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
+E + + + + ++Q + LY WRD IAR+ DEST YVLPN +L +
Sbjct: 418 LNDRKEPWKQLLYLYNIPRSRQPVFI-ALYNWRDEIAREDDESTRYVLPNQLLATITSIS 476
Query: 505 PRDIQGIFACCNPVPQTVKEHVLDIHAII 533
P D+ + +C N +K++ ++ II
Sbjct: 477 PTDVSSLMSCSNIRTPYLKKYATELVEII 505
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI 639
LY WRD IAR+ DEST YVLPN +L + P D+ + +C N +K++ ++ I
Sbjct: 445 LYNWRDEIAREDDESTRYVLPNQLLATITSISPTDVSSLMSCSNIRTPYLKKYATELVEI 504
Query: 640 I 640
I
Sbjct: 505 I 505
>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica CLIB122]
Length = 738
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 226/385 (58%), Gaps = 27/385 (7%)
Query: 168 EIERPQL--QFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE---KYDAIESFCHPYEYE 222
EI+ PQ Q +VDNS + F+PKL KPNAL+PL E + D + + PY E
Sbjct: 132 EIKGPQWKPQEMWEVDNSRDTPFKPKLTSKPNALEPLEDAFELVTEDDRRDHYPQPYAKE 191
Query: 223 -LDLYVPKEDFLKCE----EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEY 277
++ P E + + E P +A + + + E++ +V LK Q+EIAID+E+
Sbjct: 192 IMEQPYPDEVYEETEVIPNRPWEAE--GEDEYIYVDTEEKLRDMVDHLKTQEEIAIDVEH 249
Query: 278 HNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 337
H+ R+Y G TCL+Q+S+R++DYI+DT+ LR +LE+ NEVLTD IVKV HGA DI+WLQ
Sbjct: 250 HSMRTYYGITCLVQVSSREQDYIIDTIALR-NLEIFNEVLTDPKIVKVLHGATMDIQWLQ 308
Query: 338 KDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQY 397
+DFGLY+V +FDT A + L + SLA+LL+HY + + K +QL DWR RP+ + Y
Sbjct: 309 RDFGLYIVSLFDTFHAAQALGLKGHSLAFLLQHYANFVTSKKYQLSDWRIRPMSPEQLLY 368
Query: 398 ARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKP---------VFN 448
AR DTH+LL +YD +K L +++ + SR +YE F+
Sbjct: 369 ARADTHFLLNIYDQLKNALV-----QKDKIEGVLEKSRQTASQRYEYTGYDPRYYLKSFD 423
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
EG +N S + + L+ WRD +AR +DESTGYV+PN++L+ +A +P+
Sbjct: 424 YEGGINRLISQFHITGPSVSVAKALFLWRDSMARKEDESTGYVMPNYLLVSLANRMPQTP 483
Query: 509 QGIFACCNPVPQTVKEHVLDIHAII 533
+ +F+ +P V+++V +I +I
Sbjct: 484 EAVFSVSKSLPLLVRKNVEEILDVI 508
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 44/63 (69%)
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
+ L+ WRD +AR +DESTGYV+PN++L+ +A +P+ + +F+ +P V+++V +I
Sbjct: 446 KALFLWRDSMARKEDESTGYVMPNYLLVSLANRMPQTPEAVFSVSKSLPLLVRKNVEEIL 505
Query: 638 AII 640
+I
Sbjct: 506 DVI 508
>gi|448116900|ref|XP_004203126.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359383994|emb|CCE78698.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 757
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 221/389 (56%), Gaps = 28/389 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEKYDAIESFC---HPYEYEL 223
I +PQ F++KVD + + F+PK+ KPNAL ++ L F PYEYE+
Sbjct: 142 ISKPQDNFRLKVDTTEKNPFKPKISYKPNALISYDESLRLRNPGGCSDFSFYPQPYEYEI 201
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D E ++ +EP + P +T + E + +V+ELK EIA+DLE+H+YRSY
Sbjct: 202 DNQPYPEFVIQKKEPIEPKPWKETSATWVDSKEGLLSMVNELKNSTEIAVDLEHHDYRSY 261
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G CLMQIS R D++VDTL LR+DLEV+NE+ T+ I+KVFHGA DI WLQ+D GLY
Sbjct: 262 YGLVCLMQISNRQNDWLVDTLALRDDLEVMNEIFTNPQILKVFHGAFMDIIWLQRDLGLY 321
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
+V +FDT+ A K L + + SLAYLL+ + + K +QL DWR RPL YAR+DTH
Sbjct: 322 IVSLFDTYHAAKKLGLSKFSLAYLLETFAKFKTSKKYQLADWRLRPLSPAMKAYARSDTH 381
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN---IFRSHA 460
+LLY+YD M+ L G+ VL SR + K ++E F ++
Sbjct: 382 FLLYIYDQMRNKL-LENDGRLQEVL---YESRQVAKRRFEYTKFRPTSGTTTALVYSPLM 437
Query: 461 LLNNQQKYA---------------LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SI 504
+ N ++ Y+ + L++WRDR+A+ +DES Y++PN +L+ +A +
Sbjct: 438 VSNPREPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKQQDESVRYIMPNQLLVTLASLNH 497
Query: 505 PRDIQGIFACCNPVPQTVKEHVLDIHAII 533
P D Q + + V ++V+ H +I ++
Sbjct: 498 PVDAQKVITASSYVTESVRTHAEEIANLL 526
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLDIHA 638
L++WRDR+A+ +DES Y++PN +L+ +A + P D Q + + V ++V+ H +I
Sbjct: 465 LFEWRDRVAKQQDESVRYIMPNQLLVTLASLNHPVDAQKVITASSYVTESVRTHAEEIAN 524
Query: 639 II 640
++
Sbjct: 525 LL 526
>gi|429849634|gb|ELA24996.1| exosome complex exonuclease [Colletotrichum gloeosporioides Nara
gc5]
Length = 908
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 185/586 (31%), Positives = 287/586 (48%), Gaps = 85/586 (14%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
F L + ++V T++ + +P + +++++ L +LLK+
Sbjct: 7 FKSLQEKVQSALVATTRSVNRIAAEDLAFQRAVNPGVGDDLDAKTERLLELSTTLLKSAA 66
Query: 82 ISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKES 135
++ LE DI + + D +LE +T ID G P+ S
Sbjct: 67 SVCGLNAPNLEDADDIDMRWRSVVDVVDSVLEKADTSIDEYTGAIKRKDAPT----ADAS 122
Query: 136 WNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
K AK + D ++AN I +PQL F VDN+ ++P L EK
Sbjct: 123 QAKKAKTTGT-----DKVIRNAN----------ISKPQLNFDPPVDNN--ATWKPILTEK 165
Query: 196 PNALKPL--AILLEKYDAIESFC------------------------------------- 216
P+A PL +++ + D ++
Sbjct: 166 PHAKVPLEQSLVSNETDGFVTYDYTIFLPLLYMDKSTDSKHTRSRINKRHKTRGSIKSIN 225
Query: 217 ------HPYEYE-LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ 269
HPYE E L+ P + + E P P+ T + E V +++ ELK+ +
Sbjct: 226 GEIRYKHPYEAEILEAKYPDRVYQQAE-PIPWQPVDKTEATWVDTFEGVLEMLEELKKAK 284
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHG 328
EIA+DLE+H++R+Y G T LMQISTR+KD++VDTLK R+ L+VLN+V D NIVKVFHG
Sbjct: 285 EIAVDLEHHDFRTYVGLTSLMQISTREKDWVVDTLKPWRQQLQVLNQVFADPNIVKVFHG 344
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
+ DI WLQ+D GLYV G+FDT AC+ L P++SLA+LL + + D+DK +Q+ DWR R
Sbjct: 345 SYMDIIWLQRDLGLYVNGLFDTFYACEALHYPQKSLAFLLSKFANFDADKRYQMADWRMR 404
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKP 445
PL + YAR+DTHYLLYVYD ++ +L S + N + + S++ +YE
Sbjct: 405 PLSPEMLYYARSDTHYLLYVYDKVRNELVMKSDRGNPGTNYIETVLQKSKSQSLSRYEGE 464
Query: 446 VFN------EEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
F+ +G+ + H A + QQ R ++ WRD +AR +DEST YVLPN ++
Sbjct: 465 HFDPVSGKGPKGWYGLLLKHPAPFSGQQFAVYRAVWAWRDEVARREDESTAYVLPNAIIG 524
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+A+ +P D + + A P + +V DI +AR + + +P
Sbjct: 525 DIAKRMPPDAKALHALIPPSSHIARRNVSDIWVRYQEARERGVEEP 570
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 529 IHAIILKARLQSLTK-PVEKLQP-SLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDR 586
I ++ K++ QSL++ E P S G K + P + QQ R ++ WRD
Sbjct: 446 IETVLQKSKSQSLSRYEGEHFDPVSGKGPKGWYGLLLKHPAPFSGQQFAVYRAVWAWRDE 505
Query: 587 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 646
+AR +DEST YVLPN ++ +A+ +P D + + A P + +V DI +AR +
Sbjct: 506 VARREDESTAYVLPNAIIGDIAKRMPPDAKALHALIPPSSHIARRNVSDIWVRYQEARER 565
Query: 647 PLTKP 651
+ +P
Sbjct: 566 GVEEP 570
>gi|430811289|emb|CCJ31212.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 767
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 155/389 (39%), Positives = 224/389 (57%), Gaps = 33/389 (8%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK----YDAIESFCHPYEY 221
A + RPQL+F DN + K+ KPNAL PL K + HPYEY
Sbjct: 123 AENVLRPQLRFSTAPDNDPNTPWRRKITVKPNALVPLNSHTSKNNDTWHKTNISSHPYEY 182
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
E++ ++ K ++P +P +D+ + + + + ++V LK EIA+DLE+H+YR
Sbjct: 183 EINNIKYSQELFKEKKPIDPIPFNDSKAIWVNTIQLLEEMVKNLKNATEIAVDLEHHDYR 242
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
SYQG+ CLMQISTR+ D+I+DTL+LRE+LE+LNEV TD NI+KV HGA DI WLQ+DFG
Sbjct: 243 SYQGFVCLMQISTRNIDWIIDTLELREELEILNEVFTDPNIMKVLHGASMDIIWLQRDFG 302
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LY+VG+FDT+ A + L + RPLPE YAR+D
Sbjct: 303 LYIVGLFDTYHATRILGFEGHVI----------------------FRPLPEEMFSYARSD 340
Query: 402 THYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNIC-----KLKYEKPVFNEEGYMNIF 456
TH+LLY+YD +K +L + NL+LS + S N+ K KY+ +G+ NI
Sbjct: 341 THFLLYIYDQLKNELLIKSTLSHNLLLSVLSASNNVALRVFEKDKYDVDGLGVDGWKNIL 400
Query: 457 R--SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
+ S+ L ++ Q L L++WRD++AR +DES YVLPNH+L+Q+A + P D + +
Sbjct: 401 QKWSNCLTSDLQVSVLISLHQWRDKVARQEDESVRYVLPNHILVQIAVNCPEDASSVLSI 460
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTK 543
C+ +P V+ HV +I II + L K
Sbjct: 461 CSHIPPLVRVHVDEIVQIIRSTKQDELKK 489
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 569 SNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 628
+++ Q L L++WRD++AR +DES YVLPNH+L+Q+A + P D + + C+ +P
Sbjct: 408 TSDLQVSVLISLHQWRDKVARQEDESVRYVLPNHILVQIAVNCPEDASSVLSICSHIPPL 467
Query: 629 VKEHVLDIHAIILKARLQPLTK 650
V+ HV +I II + L K
Sbjct: 468 VRVHVDEIVQIIRSTKQDELKK 489
>gi|384247138|gb|EIE20625.1| hypothetical protein COCSUDRAFT_18228, partial [Coccomyxa
subellipsoidea C-169]
Length = 344
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 199/358 (55%), Gaps = 25/358 (6%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE 230
RPQ F VDNS F PKL + E+ HP E L+ ++
Sbjct: 2 RPQDAFNPPVDNS-NTPFRPKLGH--------------WVRREAAVHPLEAALNDLKYED 46
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLM 290
L+ EP+ L +TPL + + + L L +E+A+DLE H++RS+QG+ CLM
Sbjct: 47 KQLEAPEPQLPQGLDETPLTYVDTLDGLKSLAQALSAVREVAVDLEAHSFRSFQGFCCLM 106
Query: 291 QISTRDKDYIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD 349
Q+STR DY+VD + LR + L + D IVKV HG+DSDI WLQ+DFG+YV +FD
Sbjct: 107 QVSTRTADYLVDVIALRSHIGPHLAPMFADTKIVKVLHGSDSDIVWLQRDFGIYVASLFD 166
Query: 350 THQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
T QA + L P LAYLL H+C V +DK +QL DWR RPL A+ YAR DTHYLLY+Y
Sbjct: 167 TGQAARVLAYPSAGLAYLLSHFCSVKADKRWQLADWRVRPLSAEALHYARLDTHYLLYIY 226
Query: 410 DCMK-----LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLN 463
DC+K L G + SR +C +YEK +F+E Y++ +R L
Sbjct: 227 DCLKVLPDHLQEEVPERGPATCMGVVLERSRLLCLQRYEKELFSETSYLDAYRRCQEPLT 286
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP---RDIQGIFACCNPV 518
+Q LY WRDR AR++DESTG+VL +L+++A+ P RD++ + P+
Sbjct: 287 REQLAVFAGLYAWRDRTARERDESTGFVLSRALLVKLAKRAPSNARDLRAVLGKWVPL 344
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 511 IFACCNPVPQTVKEHVLD------IHAIILKARLQSLTKPVEKL---QPSLDGMKKKQQQ 561
I+ C +P ++E V + + ++ ++RL L + ++L LD ++ Q+
Sbjct: 225 IYDCLKVLPDHLQEEVPERGPATCMGVVLERSRLLCLQRYEKELFSETSYLDAYRRCQEP 284
Query: 562 QVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP---RDIQGI 618
+Q LY WRDR AR++DESTG+VL +L+++A+ P RD++ +
Sbjct: 285 L-------TREQLAVFAGLYAWRDRTARERDESTGFVLSRALLVKLAKRAPSNARDLRAV 337
Query: 619 FACCNPV 625
P+
Sbjct: 338 LGKWVPL 344
>gi|356571755|ref|XP_003554038.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 643
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 220/379 (58%), Gaps = 23/379 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYE--YELDLY 226
I++PQ + + VDNS E FE ILLEK D + + HP E LD +
Sbjct: 117 IKKPQYAYNIVVDNSNEP-FE-------------HILLEKSDDGQRYIHPLEKLSVLD-F 161
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
V KE+ L+ P + + TP ++ + + + ++ + L E A+DLE+++YRS+QG
Sbjct: 162 VDKEN-LENLVPVEPPSIECTPFKLVEDVKGLKEVAAMLSSVNEFAVDLEHNHYRSFQGL 220
Query: 287 TCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +D+++DTLK+R + L EV D KV HGAD DI WLQ+DFG+YV
Sbjct: 221 TCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVC 280
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT Q+ + L + R SL YLL+ +C V ++K +Q DWR RPLP+ ++Y R DTHYL
Sbjct: 281 NMFDTGQSSRVLKLDRYSLQYLLQQFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYL 340
Query: 406 LYVYDCMKLDLSAA---AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHAL 461
LY+YD M++ L A + G N +L + S ++C YEK + E+ Y++I+ A
Sbjct: 341 LYIYDLMRIKLFALSKESEGSDNPLLEVYKRSYDVCMQLYEKELLKEDSYLHIWGLRGAG 400
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 521
N QQ + L++WRD +AR DE GYVLPN ++L++A +P I +
Sbjct: 401 FNAQQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHP 460
Query: 522 VKEHVLDIHAIILKARLQS 540
E LD+ I++ +Q+
Sbjct: 461 YVERSLDVIVNIVRHSMQN 479
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ + L++WRD +AR DE GYVLPN ++L++A +P I +
Sbjct: 402 NAQQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHPY 461
Query: 630 KEHVLDIHAIILKARLQ 646
E LD+ I++ +Q
Sbjct: 462 VERSLDVIVNIVRHSMQ 478
>gi|440475179|gb|ELQ43880.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae Y34]
gi|440487108|gb|ELQ66914.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae P131]
Length = 854
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 211/349 (60%), Gaps = 17/349 (4%)
Query: 210 DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ 269
+ + + HPYE E+ E + +P P++ + + E V +++ +LKQ +
Sbjct: 218 NGVFRYKHPYETEILQSRHPESVYQKRDPIPYTPIAKSSPTYVDTYEGVLEMLEDLKQAK 277
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHG 328
EIA+DLE+H++R+Y G LMQISTR+KD+IVDTLK R+ LE+LNEV D +IVKVFHG
Sbjct: 278 EIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQQLEILNEVFADPSIVKVFHG 337
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
A DI WLQ+D GLYVVG+FDT A + L P +SLAYLLK + D ++DK +Q DWR R
Sbjct: 338 AFMDIVWLQRDLGLYVVGLFDTFHAAEALMYPSKSLAYLLKKFVDFEADKRYQTADWRIR 397
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLKYEKP 445
PLPE + YAR+DTHYLLYVYD M+ +L S + ++L+ T S++ +YE
Sbjct: 398 PLPEEMLYYARSDTHYLLYVYDMMRNELLRQSVSGDPHRDLLERTLQRSKDTALQRYEAY 457
Query: 446 VFNEE------GYMN-IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
+ E G+ N I R + +Q R L+KWRD +AR +DES +++ N +L+
Sbjct: 458 TIDGETGRGSRGWFNLIHRLPNTFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLV 517
Query: 499 QMAQSIPR---DIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+A+++P D++ +F P + + ++D +I +R + T P
Sbjct: 518 DIARAMPETANDLRRLFTNVGPPVRNAVDELVD---LIQDSRQKGATGP 563
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACC 622
P+ + +Q R L+KWRD +AR +DES +++ N +L+ +A+++P D++ +F
Sbjct: 478 PNTFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNV 537
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTKP 651
P + + ++D +I +R + T P
Sbjct: 538 GPPVRNAVDELVD---LIQDSRQKGATGP 563
>gi|365985620|ref|XP_003669642.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
gi|343768411|emb|CCD24399.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
Length = 790
Score = 262 bits (669), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 151/374 (40%), Positives = 213/374 (56%), Gaps = 22/374 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEKYD--AIESFCHPYEYELD 224
I +PQL+F V VDN+ F P LK KPNALK L +I L D E + PYEYE+D
Sbjct: 150 IGKPQLEFDVPVDNTETHPFIPLLKSKPNALKSLDESIQLLPVDENVPEHYAQPYEYEID 209
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ +P + P +T + + PE + ++ +L E A+DLE+H+YR+Y
Sbjct: 210 NQPYNDKILQLSDPIPSQPWMETTAIWVDTPESLQSMIKDLNNCTEFAVDLEHHDYRTYY 269
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR +DYIVDTLKLR L+ LNE T+ I KV HGA DI WLQ+D GLY+
Sbjct: 270 GIVCLMQISTRTQDYIVDTLKLRSHLQPLNEPFTNPQITKVLHGAFMDIIWLQRDLGLYI 329
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT A + L P+ SLAYLL+ + + + K +Q+ DWR RPL + YAR+DTH+
Sbjct: 330 VSLFDTFHASRALGFPKNSLAYLLEKFSNFKTSKKYQMADWRIRPLSKAMNSYARSDTHF 389
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVFNEEG-YMNIFRSH 459
LL ++D M+ L GK VL SRN+ K ++E +P+ Y I +
Sbjct: 390 LLNIFDQMRNKL--VQDGKLAGVLK---ESRNVAKRRFEYVKYRPLITSSAVYSPIEKID 444
Query: 460 ALLNNQQKYAL--------RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+Y + +ELY+WRD+IAR DES Y++PN +L+ + P + G+
Sbjct: 445 PWKTLMYQYNIPLAKELLLKELYQWRDKIARRDDESPRYIMPNQLLVSLVAYAPVEPAGV 504
Query: 512 FACCNPVPQTVKEH 525
+ N V V+ +
Sbjct: 505 VSVSNMVTDHVRSN 518
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 581 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
Y+WRD+IAR DES Y++PN +L+ + P + G+ + N V V+ +
Sbjct: 467 YQWRDKIARRDDESPRYIMPNQLLVSLVAYAPVEPAGVVSVSNMVTDHVRSN 518
>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
Length = 512
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 185/288 (64%), Gaps = 6/288 (2%)
Query: 236 EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR 295
+EP + LS+TPL ++ + + ++L EIA+DLE H+YRS+QG+ CLMQ+STR
Sbjct: 211 DEPVKPKSLSETPLFIVESLPALETMAAKLHASSEIAVDLENHHYRSFQGFVCLMQVSTR 270
Query: 296 DKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
+D+IVDTL LR + VL V + +I KV HG+D DI WLQ+DFG+YV +FDT QA
Sbjct: 271 SQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAA 330
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ L M R LA+LL+ +C V DK +QL DWR RPL ++YAR DTHYLLYVYD MK
Sbjct: 331 RVLRMERFGLAFLLQTFCGVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMK- 389
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALREL 473
+ A ++L L SR++C YEK +F E +++I+ + L ++ + L
Sbjct: 390 GMLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTPEKLAIVAGL 449
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD---IQGIFACCNPV 518
Y WRD++ R +DESTGY+LPN +L ++A+ P+D +QGI +PV
Sbjct: 450 YAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDAKRLQGILRRGHPV 497
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD---IQGIFACCNPV 625
LY WRD++ R +DESTGY+LPN +L ++A+ P+D +QGI +PV
Sbjct: 449 LYAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDAKRLQGILRRGHPV 497
>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 175/513 (34%), Positives = 274/513 (53%), Gaps = 42/513 (8%)
Query: 5 NQEIPKSDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAG 64
++E P +AN E++KT VQ+A I + + A+ FP+ + P + + V
Sbjct: 3 DRENPAPLQAN-EVAKTLKGPVQDA---IHRVERLAEEFPADKDFHFYNNFPQFKTPVRR 58
Query: 65 TSDKVMTLVDSLLKTQNISKSMSKL--YLEGQKDILTEANDKLLESINTRIDVMAGTKTP 122
+V L++ L ++ + L+ D L D L+E I+ +D +A K+
Sbjct: 59 IQTQVKDLLNDLGLANHLRPQTAGFPSDLDETYDWLVALQDDLMEGIDAAVDQLAKQKSD 118
Query: 123 SVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDN 182
+ + N+ AKAS ++++S + + + I RPQ +F V VDN
Sbjct: 119 GKRGRPNEKFRTPTNEGAKASK-----GSDERRSVPFHVRS-----IPRPQNKFDVMVDN 168
Query: 183 SYEQLFEP---KLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPK 239
S P KL + + PL +L K + + E L+ P+
Sbjct: 169 SNTPFKHPQVQKLDSQSEDMHPLEDVLTKMEYV----------------NEKMLEAPVPQ 212
Query: 240 QALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDY 299
+ P+ +TPL +I+ ++ + + + EIA+DLE HNYRS+QG+ CLMQ+STR +D+
Sbjct: 213 EPRPVDETPLTVISTASELKDMAMKCRLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDF 272
Query: 300 IVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT-HQACKFL 357
IVD L LR + L ++ D N+ KV HGAD DI+WLQ+DFG+YV MFDT QA + L
Sbjct: 273 IVDALALRSHMGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVL 332
Query: 358 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL- 416
+ LA+L++ + ++ DK +QL DWR RPLP I+YAR DTHYLLY+YD +++ L
Sbjct: 333 QLEGFGLAFLMQRFLKINPDKRYQLADWRIRPLPAEMIKYAREDTHYLLYLYDLLRVVLV 392
Query: 417 ---SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRE 472
S A + + VL + SR+IC Y+K + E Y++++ N++Q L
Sbjct: 393 SMRSTAGNDADDPVLQVYKRSRDICLKMYKKDILTETSYLSLYGLQDKNFNSEQMSVLAG 452
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
LY WRD +AR DESTG+VLPN +L ++A+ +P
Sbjct: 453 LYAWRDNLARKLDESTGFVLPNQLLYKLAEEMP 485
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N++Q L LY WRD +AR DESTG+VLPN +L ++A+ +P
Sbjct: 443 NSEQMSVLAGLYAWRDNLARKLDESTGFVLPNQLLYKLAEEMP 485
>gi|334183304|ref|NP_001185222.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 639
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 204/342 (59%), Gaps = 20/342 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
+ +PQ ++K+ VDN+ FE +LLEK + F HP E EL +
Sbjct: 50 LTKPQEEYKILVDNA-NNPFE-------------HVLLEKSEDGLRFIHPLE-ELSVMDF 94
Query: 229 KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L P + LPL +TP ++ E + + L + L+ +E A+DLE++ YR++QG TC
Sbjct: 95 VDRNLSEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTC 154
Query: 289 LMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
LMQISTR +DYIVD KL + + L E+ D KV HGAD DI WLQ+DFG+YV +
Sbjct: 155 LMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNL 214
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDT QA + L + R SL +LLKHYC V ++K +Q DWR RPLP+ +YAR DTHYLLY
Sbjct: 215 FDTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLY 274
Query: 408 VYDCMKLDLSAAAHGKQ---NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLN 463
+YD M+++L A + + ++ + S ++C YEK ++ + Y++++ LN
Sbjct: 275 IYDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLN 334
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
Q + L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 335 AVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 376
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N Q + L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 334 NAVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 376
>gi|145336746|ref|NP_175846.3| RRP6-like protein 1 [Arabidopsis thaliana]
gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 637
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 204/342 (59%), Gaps = 20/342 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
+ +PQ ++K+ VDN+ FE +LLEK + F HP E EL +
Sbjct: 50 LTKPQEEYKILVDNA-NNPFE-------------HVLLEKSEDGLRFIHPLE-ELSVMDF 94
Query: 229 KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L P + LPL +TP ++ E + + L + L+ +E A+DLE++ YR++QG TC
Sbjct: 95 VDRNLSEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTC 154
Query: 289 LMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
LMQISTR +DYIVD KL + + L E+ D KV HGAD DI WLQ+DFG+YV +
Sbjct: 155 LMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNL 214
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDT QA + L + R SL +LLKHYC V ++K +Q DWR RPLP+ +YAR DTHYLLY
Sbjct: 215 FDTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLY 274
Query: 408 VYDCMKLDLSAAAHGKQ---NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLN 463
+YD M+++L A + + ++ + S ++C YEK ++ + Y++++ LN
Sbjct: 275 IYDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLN 334
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
Q + L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 335 AVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 376
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N Q + L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 334 NAVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 376
>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1016
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 215/388 (55%), Gaps = 51/388 (13%)
Query: 166 AVEIERPQLQFKVKVDNS-YEQLFEPKLKEKPNALKPLAI-------------------L 205
A ++ +PQL F DN+ + ++P L KP+A+ PL
Sbjct: 206 ASDLTKPQLLFHDAPDNARTSESWKPSLTTKPHAMVPLGFKAPLDYELTSEEEMDPSKAA 265
Query: 206 LEKYDAIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSE 264
L + I + HPY YE L P F+ + P +TP + PE++ ++V +
Sbjct: 266 LRREKEIRARTHPYYYETKHLPYPTSLFIDSK-PVPPQSFDETPFEFVDTPEKLHRMVEK 324
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL--EVLNEVLTDKNI 322
LKQ +EIA+DLE+H+ RSY G+TCL+QISTR+ D++VDTL LR+++ + +V TD I
Sbjct: 325 LKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTI 384
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 382
VKVFHGADSDI WLQ+DF ++VV +FDT+ AC L MP++SL+ LL+HYC+ ++DK +Q
Sbjct: 385 VKVFHGADSDIIWLQRDFEIFVVNLFDTYSACVVLEMPQRSLSALLQHYCNFEADKRYQR 444
Query: 383 FDWRHRPLPEPAIQYARTDTHYLLYVYD------------------CMKLDLSAAAHGKQ 424
DWR RPLP+ + YAR+DTH+LL++YD C + L +A Q
Sbjct: 445 ADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSSPANCGTIVLDSARPNPQ 504
Query: 425 NLVLSTFTNSRNICKLKYEKPVFN------EEGYMNIFRS---HALLNNQQKYALRELYK 475
+ S + YE+ ++ G++ + + + + R L+
Sbjct: 505 EAMREVLGKSADTALKMYERDSYDIVTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHD 564
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQS 503
WRDR+AR+ DES Y++PN+ML ++ +
Sbjct: 565 WRDRVAREMDESPFYIMPNNMLRDVSTA 592
Score = 44.3 bits (103), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 610
+ + R L+ WRDR+AR+ DES Y++PN+ML ++ +
Sbjct: 554 ESGWVWRHLHDWRDRVAREMDESPFYIMPNNMLRDVSTA 592
>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
Length = 642
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 206/344 (59%), Gaps = 22/344 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
+ +PQ ++K+ VDN+ FE +LLEK + F HP E EL +
Sbjct: 50 LTKPQEEYKILVDNA-NNPFE-------------HVLLEKSEDGLRFIHPLE-ELSVMDF 94
Query: 229 KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L P + LPL +TP ++ E + + L + L+ +E A+DLE++ YR++QG TC
Sbjct: 95 VDRNLSEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTC 154
Query: 289 LMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
LMQISTR +DYIVD KL + + L E+ D KV HGAD DI WLQ+DFG+YV +
Sbjct: 155 LMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNL 214
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDT QA + L + R SL +LLKHYC V ++K +Q DWR RPLP+ +YAR DTHYLLY
Sbjct: 215 FDTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLY 274
Query: 408 VYDCMKLDLSAAAHGKQ---NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLN 463
+YD M+++L A + + ++ + S ++C YEK ++ + Y++++ LN
Sbjct: 275 IYDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLN 334
Query: 464 NQQK--YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
Q AL+ L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 335 AVQLSIVALQGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 378
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
AL+ L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 342 ALQGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 378
>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/291 (45%), Positives = 188/291 (64%), Gaps = 10/291 (3%)
Query: 218 PYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEY 277
P E +D VP+ EP + + DTP ++ + + +T+LV++LK E A+DLE+
Sbjct: 8 PVEQFIDRNVPES------EPVRPADVDDTPFTLVEDLKGLTELVNKLKDVNEFAVDLEH 61
Query: 278 HNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWL 336
+ YRS+QG TCLMQISTR +D+I+DTLKLR + L E+ D KV HGAD DI WL
Sbjct: 62 NQYRSFQGLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWL 121
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+DF +YV +FDT QA + L M R SL +LL H+C V ++K +Q DWR RPL + I+
Sbjct: 122 QRDFRVYVCNLFDTGQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIK 181
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF 456
YAR DTHYLLY+YD M+L L + + +L+L S +IC YEK + ++ Y++I+
Sbjct: 182 YAREDTHYLLYIYDLMRLRLQRESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIY 241
Query: 457 --RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+ H L Q + L++WRD IARD+DESTGYVLPN L+++A+ +P
Sbjct: 242 GLQEHE-LTAAQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMP 291
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
H+ Q + L++WRD IARD+DESTGYVLPN L+++A+ +P
Sbjct: 246 HELTAAQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMP 291
>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1016
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 215/388 (55%), Gaps = 51/388 (13%)
Query: 166 AVEIERPQLQFKVKVDNS-YEQLFEPKLKEKPNALKPLAI-------------------L 205
A ++ +PQL F DN+ + ++P L KP+A+ PL
Sbjct: 206 ASDLTKPQLLFHDAPDNARTSESWKPSLTTKPHAMVPLGFKAPLDYELTSEEEMDPSKAA 265
Query: 206 LEKYDAIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSE 264
L + I + HPY YE L P F+ + P +TP + PE++ ++V +
Sbjct: 266 LRREKEIRARTHPYYYETKHLPYPTSLFIDSK-PVPPQSFDETPFEFVDTPEKLHRMVEK 324
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL--EVLNEVLTDKNI 322
LKQ +EIA+DLE+H+ RSY G+TCL+QISTR+ D++VDTL LR+++ + +V TD I
Sbjct: 325 LKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTI 384
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 382
VKVFHGADSDI WLQ+DF ++VV +FDT+ AC L MP++SL+ LL+HYC+ ++DK +Q
Sbjct: 385 VKVFHGADSDIIWLQRDFEIFVVNLFDTYSACVVLEMPQRSLSALLQHYCNFEADKRYQR 444
Query: 383 FDWRHRPLPEPAIQYARTDTHYLLYVYD------------------CMKLDLSAAAHGKQ 424
DWR RPLP+ + YAR+DTH+LL++YD C + L +A Q
Sbjct: 445 ADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSSPANCGTIVLDSARPNPQ 504
Query: 425 NLVLSTFTNSRNICKLKYEKPVFN------EEGYMNIFRS---HALLNNQQKYALRELYK 475
+ S + YE+ ++ G++ + + + + R L+
Sbjct: 505 EAMREVLGKSADTALKMYERDSYDIVTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHD 564
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQS 503
WRDR+AR+ DES Y++PN+ML ++ +
Sbjct: 565 WRDRVAREMDESPFYIMPNNMLRDVSTA 592
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 610
+ + R L+ WRDR+AR+ DES Y++PN+ML ++ +
Sbjct: 554 ESGWVWRHLHDWRDRVAREMDESPFYIMPNNMLRDVSTA 592
>gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 936
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 218/381 (57%), Gaps = 28/381 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYE--YELDLY 226
I RPQ +F + V+NS Q FE + L++ + F HP E LD +
Sbjct: 185 IRRPQDEFNILVNNS-NQPFE-------------HVWLQRSEDGIRFVHPLEKLSVLD-F 229
Query: 227 VPK--EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
V K EDF +P L TP I E + +L ++L+ E A+DLE++ YRS+Q
Sbjct: 230 VDKISEDF----QPIYPPSLDCTPFKFIEEVNDLKELAAKLRGVNEFAVDLEHNQYRSFQ 285
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +DY+VDTLKLR + L EV D + KV HGAD D+ WLQ+DFG+Y
Sbjct: 286 GLTCLMQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGIY 345
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
+ +FDT QA + L + R SL YLL H+C V ++K +Q DWR RPLPE ++YAR DTH
Sbjct: 346 ICNLFDTGQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYAREDTH 405
Query: 404 YLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA 460
YLLY+YD M++ L++ + ++ + S ++C YEK + E Y+ ++
Sbjct: 406 YLLYIYDLMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQG 465
Query: 461 LLNNQQKYALRE-LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
+ Q+ A+ L++WRD +AR +DESTGY+LPN LL++A+ +P + +
Sbjct: 466 SGFDAQQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKH 525
Query: 520 QTVKEHVLDIHAIILKARLQS 540
++ ++ I II + L S
Sbjct: 526 PYIERNLASIVTIIRHSMLNS 546
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
QQ L++WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 471 QQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMP 511
>gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 889
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 207/345 (60%), Gaps = 23/345 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
I RPQ ++ + V+N+ FE + L++ D SF HP E +L +
Sbjct: 191 IRRPQDEYNIVVNNA-NMPFE-------------HVWLQRSDDGLSFIHPLE-KLSVLNF 235
Query: 229 KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L P + + TP ++ E + + +L ++L+ E A+DLE++ YRS+QG TC
Sbjct: 236 VDTNLGDVVPVKPPSIESTPFKLVEEVKDLKELAAKLRSVNEFAVDLEHNQYRSFQGLTC 295
Query: 289 LMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
LMQISTR +D+IVDTLKLR + L E+ D KV HGAD DI WLQ+DFG+Y+ +
Sbjct: 296 LMQISTRTEDFIVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIAWLQRDFGIYICNL 355
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDTHQA K L + R SL ++L H+C+V ++K +Q DWR RPLP+ I+YAR DTHYLLY
Sbjct: 356 FDTHQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLY 415
Query: 408 VYDCMKLDLSAAAHGKQNL------VLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHA 460
+YD M++ L A + ++ ++ + S ++C YEK + E Y++I+ A
Sbjct: 416 IYDLMRIKLFALSKESESSESSDTPLVEVYKRSYDVCIQLYEKELLTENSYLHIYGLQGA 475
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N QQ + L +WRD +AR +DESTGYVLPN +L++A+ +P
Sbjct: 476 GFNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMP 520
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ + L +WRD +AR +DESTGYVLPN +L++A+ +P
Sbjct: 478 NAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMP 520
>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
6), putative [Cryptococcus gattii WM276]
Length = 851
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 217/389 (55%), Gaps = 53/389 (13%)
Query: 166 AVEIERPQLQFKVKVDNS-YEQLFEPKLKEKPNALKPLAI-------------------L 205
A ++ +PQL F DN+ + ++P L KP+A+ PL
Sbjct: 49 ASDLTKPQLLFHDAPDNARTSESWKPSLTTKPHAMVPLGFKAPLDYELTSEEEMDPSKAA 108
Query: 206 LEKYDAIESFCHPYEYEL-DLYVPKEDFLKCEE-PKQALPLSDTPLMMITEPEQVTQLVS 263
L + I + HPY YE L P F+ + P Q+ +TP + PE+ ++V
Sbjct: 109 LRREKEIRARTHPYYYETKHLPYPTSLFIDSKPVPPQSF--DETPFEFVDTPEKFHRMVG 166
Query: 264 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL--EVLNEVLTDKN 321
+LKQ +EIA+DLE+H+ RSY G+TCL+QISTR+ D++VDTL LR+++ + +V TD
Sbjct: 167 KLKQAKEIAVDLEHHDMRSYSGFTCLIQISTRENDWVVDTLSLRKEIQQDKFGDVFTDPT 226
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 381
+VKVFHGADSDI WLQ+DF ++VV +FDT+ AC L MP++SL+ LL+HYC+ ++DK +Q
Sbjct: 227 VVKVFHGADSDIVWLQRDFEIFVVNLFDTYNACVVLGMPQRSLSALLQHYCNFEADKRYQ 286
Query: 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK------------------LDLSAAAHGK 423
DWR RPLP+ + YAR+DTH+LL++YD ++ + L +A
Sbjct: 287 RADWRIRPLPDGMLNYARSDTHFLLFIYDNLRNALLHKSSRPSSPAASGTIVLDSAKPNP 346
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIFRS---HALLNNQQKYALRELY 474
Q + S YE+ ++ E G++ + + + + R L+
Sbjct: 347 QEAMREVLDKSAETALKMYERDSYDIETGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLH 406
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQS 503
WRDR+AR+ DES YV+PN+ML ++ +
Sbjct: 407 DWRDRVAREMDESPFYVMPNNMLRDVSTA 435
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 610
+ + R L+ WRDR+AR+ DES YV+PN+ML ++ +
Sbjct: 397 ESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDVSTA 435
>gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 935
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 218/381 (57%), Gaps = 28/381 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYE--YELDLY 226
I RPQ +F + V+NS Q FE + L++ + F HP E LD +
Sbjct: 185 IRRPQDEFNILVNNS-NQPFE-------------HVWLQRSEDGIRFVHPLEKLSVLD-F 229
Query: 227 VPK--EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
V K EDF +P L TP I E + +L ++L+ E A+DLE++ YRS+Q
Sbjct: 230 VDKISEDF----QPIYPPSLDCTPFKFIEEVNDLKELAAKLRGVNEFAVDLEHNQYRSFQ 285
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +DY+VDTLKLR + L EV D + KV HGAD D+ WLQ+DFG+Y
Sbjct: 286 GLTCLMQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGIY 345
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
+ +FDT QA + L + R SL YLL H+C V ++K +Q DWR RPLPE ++YAR DTH
Sbjct: 346 ICNLFDTGQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYAREDTH 405
Query: 404 YLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA 460
YLLY+YD M++ L++ + ++ + S ++C YEK + E Y+ ++
Sbjct: 406 YLLYIYDLMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQG 465
Query: 461 LLNNQQKYALRE-LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
+ Q+ A+ L++WRD +AR +DESTGY+LPN LL++A+ +P + +
Sbjct: 466 SGFDAQQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKH 525
Query: 520 QTVKEHVLDIHAIILKARLQS 540
++ ++ I II + L S
Sbjct: 526 PYIERNLASIVTIIRHSMLNS 546
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
QQ L++WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 471 QQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMP 511
>gi|405119146|gb|AFR93919.1| PM-scl autoantigen [Cryptococcus neoformans var. grubii H99]
Length = 954
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 215/388 (55%), Gaps = 51/388 (13%)
Query: 166 AVEIERPQLQFKVKVDNS-YEQLFEPKLKEKPNALKPLAI-------------------L 205
A ++ +PQL F DN+ ++P L KP+A+ PL
Sbjct: 144 ASDLTKPQLLFHDAPDNARTSDSWKPSLTTKPHAMVPLGFKAPLDYELTSEEEMDSSKAA 203
Query: 206 LEKYDAIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSE 264
L + I + HPY YE L P F+ + P ++TP + PE++ ++V +
Sbjct: 204 LRREKEIRARTHPYYYETKHLPYPTSLFIDSK-PVPPQSFNETPFEFVDTPEKLHRMVEK 262
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL--EVLNEVLTDKNI 322
LK+ +EIA+DLE+H+ RSY G+TCL+QISTR+ D++VDTL LR+++ + +V TD I
Sbjct: 263 LKEAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTI 322
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 382
VKVFHGADSDI WLQ+DF ++VV +FDT+ AC L MP++SL+ LL+HYC ++DK +Q
Sbjct: 323 VKVFHGADSDIIWLQRDFEIFVVNLFDTYSACVVLEMPQRSLSALLQHYCSFEADKRYQR 382
Query: 383 FDWRHRPLPEPAIQYARTDTHYLLYVYD------------------CMKLDLSAAAHGKQ 424
DWR RPLP+ + YAR+DTH+LL++YD C + L +A Q
Sbjct: 383 ADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSSPATCGTIVLDSARPNPQ 442
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIFRS---HALLNNQQKYALRELYK 475
+ S + YE+ ++ E G++ + + + + R L+
Sbjct: 443 EAMREVLERSADTALKMYERDSYDIETGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHD 502
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQS 503
WRDR+AR+ DES YV+PN+ML ++ +
Sbjct: 503 WRDRVAREMDESPFYVMPNNMLRDVSTA 530
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 610
+ + R L+ WRDR+AR+ DES YV+PN+ML ++ +
Sbjct: 492 ESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDVSTA 530
>gi|342180559|emb|CCC90035.1| putative ribosomal RNA processing protein 6 [Trypanosoma congolense
IL3000]
Length = 745
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 178/543 (32%), Positives = 273/543 (50%), Gaps = 54/543 (9%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVD---SLLKTQN 81
LV A+ + TK A + + +A + ++ S+ V+T++D LL ++
Sbjct: 43 LVHGAFSLVKAYTKLAAEL-AAEDYDYHMAFTGFRQQISRHSEAVVTVMDKCCQLLPSKR 101
Query: 82 ---ISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNK 138
+S KL Q+ + EA D LLE+++ +D + G + + K
Sbjct: 102 RVVLSDGTGKLS-SLQRAAVMEAADSLLENVDGLLDELRGRRLSA--------------K 146
Query: 139 NAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNA 198
+ E+ S L V I RPQL F+ VDN+ EK
Sbjct: 147 EQLSVKFGSELQGPAAASGG---LTGSGVNITRPQLTFEHPVDNTATPFCPVYYDEK--G 201
Query: 199 LKPLAILLEKYDAIESFCHPYEYEL--DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPE 256
++ + E HP+ + + LK E P LPL PL + E
Sbjct: 202 IRHVG---------EPGVHPFAERIKNASISSAQLLLKTETPY--LPLDSCPLTFVDAVE 250
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
+ +V+ L ++ EIA+DLE+H++ SYQG+TCLMQIS+R +D+I+D LKLR + +L V
Sbjct: 251 SLQTVVAVLLKETEIAVDLEHHDFYSYQGFTCLMQISSRTEDFIIDCLKLRSHMHLLAPV 310
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
+ +IVKV HGA DI+WLQKDFGLYVV +FDT A + L MP SLA+ + H+C V
Sbjct: 311 FLEPSIVKVLHGAREDIRWLQKDFGLYVVNLFDTSVALQNLHMP-HSLAFAVDHFCQVKL 369
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL----SAAAHGKQNLVLSTFT 432
+K +Q DWR RP+P I YA+ DTH+LLYVYD +K L S A G N+++ F
Sbjct: 370 NKKYQTADWRVRPIPAEMISYAQQDTHFLLYVYDRLKQLLLNCESRATVG--NMLVHVFQ 427
Query: 433 NSRNICKLKYEKPVFNEEGY--MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
SR + +YEKP + + + + RS L+ Q RE++ WRD AR+ D+S
Sbjct: 428 ESRALSLERYEKPQLDPDATYKLALGRSLGGLSLSQLQVAREIFNWRDAAAREADDSPSA 487
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
V+ +L +A +P + CC+PV V+ +V+ + I+ +S+T E ++
Sbjct: 488 VMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTNVMKLLQIV-----KSVTGGTESVKD 542
Query: 551 SLD 553
+D
Sbjct: 543 GVD 545
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
RE++ WRD AR+ D+S V+ +L +A +P + CC+PV V+ +V+ +
Sbjct: 468 REIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTNVMKLL 527
Query: 638 AIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGL 686
I+ + +T E ++ DG+ ++ +P L+Y G+
Sbjct: 528 QIV-----KSVTGGTESVK---DGVDDGAVSRKCAPAGGVGAALHYVGV 568
>gi|402080291|gb|EJT75436.1| exosome complex exonuclease Rrp [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 834
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 186/560 (33%), Positives = 278/560 (49%), Gaps = 53/560 (9%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
E S+ F L ++V T+ + S P+ + K++ L +L
Sbjct: 2 EASQDFKSLQDKIQAALVSTTRRVNAIASQDLGFRRNVDPDSAEQLDEQRTKILELASAL 61
Query: 77 LKTQNISKSMSK-------LYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPS 123
++T S ++ + LE +D+ + +A D LE +T ID G
Sbjct: 62 VQTAASSAGGARAKAKAKPITLEDAEDVDDNWQTIVDALDTALEKADTCIDDYTGLVKRK 121
Query: 124 VLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNS 183
P+ NAK S Q D + AN I +PQ F DN
Sbjct: 122 DAPTA------EMGPNAKKSKPGQ--LDRSLRYAN----------IIKPQKAFDTAPDNF 163
Query: 184 YEQLFEPKLKEKPNALKPLAILLEKY---DAIESFCHPYEYELDLYVPKEDFLKCEEPKQ 240
+ ++P L KP+A PL L + D + HPYE E+ E + EP
Sbjct: 164 GKGPWKPILSTKPHATVPLEQSLSTFQDDDGETQYKHPYETEILHMKYPESTYQTREPIP 223
Query: 241 ALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYI 300
P++ + + + E V +++ +LK+ EIA+DLE+H++R+Y G LMQ+STRDKD++
Sbjct: 224 YTPVTKSKPIYVDTYEGVLEMLEDLKRATEIAVDLEHHDFRTYSGLLSLMQVSTRDKDWV 283
Query: 301 VDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM 359
VDTLK R LEVLN+V D I+KVFHGA DI WLQ+D GLYVVG+FDT A + L
Sbjct: 284 VDTLKPWRRRLEVLNQVFADPKILKVFHGAFMDIIWLQRDLGLYVVGLFDTFHAAEALLY 343
Query: 360 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL--- 416
P +SLAYLLK + D ++DK FQ+ DWR RPL + + YAR+DTHYLLYVYD M+ +L
Sbjct: 344 PSKSLAYLLKKFADFEADKRFQMADWRIRPLSKEMLYYARSDTHYLLYVYDMMRNELVKQ 403
Query: 417 SAAAHGKQNLVLSTFTNSRNICKLKYE----KPVFNE--EGYMN-IFRSHALLNNQQKYA 469
S +LV S+ ++E PV + G+ N I R + ++Q
Sbjct: 404 SRRGDPDGDLVEKALQKSKETSLQRHEPYTSDPVTGKGTRGWFNGISRIPSNFTSEQFAV 463
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI----FACCNPVPQTVKEH 525
REL++WRD AR +DES Y++ +L++ ++++P + F NP +K+
Sbjct: 464 FRELHRWRDETARREDESPMYIMSQQVLVEASRAMPSSPNELRKLFFHPSNP----LKDG 519
Query: 526 VLDIHAIILKARLQSLTKPV 545
V + +I +AR + P
Sbjct: 520 VNQLVRLIKRAREKGAEGPT 539
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI----FAC 621
P + ++Q REL++WRD AR +DES Y++ +L++ ++++P + F
Sbjct: 453 PSNFTSEQFAVFRELHRWRDETARREDESPMYIMSQQVLVEASRAMPSSPNELRKLFFHP 512
Query: 622 CNPVPQTVKEHV 633
NP+ V + V
Sbjct: 513 SNPLKDGVNQLV 524
>gi|346326755|gb|EGX96351.1| exosome complex exonuclease Rrp [Cordyceps militaris CM01]
Length = 852
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 173/540 (32%), Positives = 273/540 (50%), Gaps = 50/540 (9%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
F L KS+V K A + +P+ + S +++ L LL++
Sbjct: 7 FKSLQDGVQKSLVSTVKYANRIAAEDLGFQRTVNPDAAEQLDEKSARLLDLTARLLQSAA 66
Query: 82 ISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGT----KTPSVLPSQPKI 131
+ ++ L+ +DI + + D +LE +T +D G + P S+PK
Sbjct: 67 RACGVTTPALDDAEDIDLNWQGVVDVVDSVLEKADTALDEYTGLIKRKEPPLDASSKPKR 126
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
K + K + +NV +PQ+ F+V+ DN ++P
Sbjct: 127 TKPT-GKVIRNANV------------------------GKPQILFEVQPDNFPTGPWKPI 161
Query: 192 LKEKPNALKPLAILLEKY---DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTP 248
+ +KP+A PL L + D + HPYE E+ + K +P P T
Sbjct: 162 ITKKPHATVPLKDSLVTFIDEDGSTQYKHPYEPEILQGTYPDSVFKVADPIPWQPTETTT 221
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LR 307
+ E V +++ +LK+ EIAIDLE+H++R+Y G LMQISTR +D+IVDTL+ R
Sbjct: 222 AKWVDTYEDVLEMLKDLKRADEIAIDLEHHDFRTYTGLVSLMQISTRQQDWIVDTLQPWR 281
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
LEVLNEV D +IVKVFHGA D+ WLQ+D GLYV G+FDT+ AC+ L +SLA+L
Sbjct: 282 HKLEVLNEVFADPSIVKVFHGAYMDMIWLQRDLGLYVNGLFDTYFACQQLGYSGRSLAFL 341
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---KQ 424
L + D D+DK +QL DWR RP+PE + YAR+DTHYLL++YD ++ DL ++++ +Q
Sbjct: 342 LSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHIYDQVRNDLVSSSNRSVPEQ 401
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIF--RSHALLNNQQKYALRELYKW 476
+L+ SR + ++ +NEE G+ N SH + Q + ++KW
Sbjct: 402 DLISRALEKSRELSLSRHVHSGYNEETGEGSRGWYNYVLKHSHLAYDAAQFTLFKTIWKW 461
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RD AR +DES +VL + L + ++ P D + + + + + +I +L+A
Sbjct: 462 RDDTARKEDESPNFVLGTNHLADVCRASPPDAKALHSLMPLTAPMARSRIDEIWVRVLEA 521
>gi|157876102|ref|XP_001686412.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
Length = 742
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 235/443 (53%), Gaps = 29/443 (6%)
Query: 91 LEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKI-VKESWNKNAKASNVWQEV 149
LE ++ + EA D LLES+++ +D + G K L +Q ++ V A S V
Sbjct: 92 LEAERTTVMEAVDSLLESVDSLLDEVKGRK----LDAQEQLSVTFGSELAASPSREGGVV 147
Query: 150 HDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY 209
D A L I RPQL F VDNS F P + +Y
Sbjct: 148 ADAASTRAGVLRL----AHIRRPQLLFDTPVDNSAAP-FVPHYYDASG----------QY 192
Query: 210 DAIESFCHPYEYELDLY-VPKEDFL-KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQ 267
+ HP+E + + +P L + E P +PL PL + + ++ +L
Sbjct: 193 HVGVAGQHPFESVIKAFSIPASQILPRAEVPP--VPLDACPLTFVDTSAAMQAMIEKLLL 250
Query: 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 327
+EIA+DLE+H++ SYQG+TCLMQISTR++D+IVD LKLR + L V + +I+KV H
Sbjct: 251 SREIAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKLRSSMGALAPVFLNPSILKVLH 310
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
GA DI+WLQKDF LYVV +FDT A + L MP SLA+ + H+C V +K +Q DWR
Sbjct: 311 GAREDIRWLQKDFSLYVVNLFDTGVALQTLHMP-YSLAFAVDHFCQVKLNKKYQTADWRV 369
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMKLDL--SAAAHGKQNLVLSTFTNSRNICKLKYEKP 445
RPL + YAR DTH+LLYV+D +K L S ++++ + S+ + YEKP
Sbjct: 370 RPLSAEMVHYARQDTHFLLYVHDRLKALLLNSEGRASIGSVLVHVYNESKQLSLQIYEKP 429
Query: 446 -VFNEEGY-MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
V EE Y M + RS + LN Q+ R+++ WRD AR+ D+S VL +L +A
Sbjct: 430 NVVPEETYKMALGRSLSGLNKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASK 489
Query: 504 IPRDIQGIFACCNPVPQTVKEHV 526
+P + + CC P V+++V
Sbjct: 490 LPTTAKALLRCCAPATAVVRDNV 512
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC P V
Sbjct: 449 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVV 508
Query: 630 KEHV 633
+++V
Sbjct: 509 RDNV 512
>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
Length = 702
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 205/345 (59%), Gaps = 24/345 (6%)
Query: 169 IERPQLQFKVKVDN--SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLY 226
I RPQ +K+ VDN +E ++ + ++ + PL L P E +
Sbjct: 87 IPRPQDVYKIIVDNYNPFEHVWLERSEDGTRRVHPLEKL------------PVEQFVGRN 134
Query: 227 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
+P+ EP + L DTP ++ + + + +L +LK E A+DLE++ YRS+QG
Sbjct: 135 IPER------EPVKPAALEDTPFTLVEDHKGLVELAKKLKGVTEFAVDLEHNQYRSFQGL 188
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
TCLMQISTR +D+IVDTLKLR + + L E D KV HGAD DI WLQ+DF +YV
Sbjct: 189 TCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVC 248
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT QA + L M R SL +LL H+C V + K +Q DWR RPLP+ I+YAR DTHYL
Sbjct: 249 NLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYL 308
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF--RSHALLN 463
LY+YD M+ L + + +L+L S IC YEK + + Y++I+ + H L+
Sbjct: 309 LYIYDLMRQRLQKESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHE-LD 367
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+Q + L++WRD IAR +DESTGY+LPN L+++A+ +P D+
Sbjct: 368 AKQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIAKQMPTDV 412
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
H+ + +Q + L++WRD IAR +DESTGY+LPN L+++A+ +P D+
Sbjct: 364 HELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIAKQMPTDV 412
>gi|401428763|ref|XP_003878864.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 743
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 183/559 (32%), Positives = 286/559 (51%), Gaps = 39/559 (6%)
Query: 11 SDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVM 70
S A+ L T DV V + S+ + +K + P + +A P + + S+ ++
Sbjct: 3 SKPADGALPVTKDV-VSVVFGSVKEYSKLSAQLP-LDDYDYHLAFPGFRKHIRDDSETLI 60
Query: 71 TLVDSL-----------LKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGT 119
L+D+ L + +S + LE ++ + EA D LLES+++ +D + G
Sbjct: 61 ALMDACTRMLPKRRRTSLSAEADPRSGAFHLLETERTTVMEAVDSLLESVDSLLDEVKGR 120
Query: 120 KTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVK 179
+ L +Q ++ ++ + N V + SA +L I RPQL F
Sbjct: 121 R----LDAQEQLSVTFGSELEVSQNREGGVVVAEAASARAGVLRLA--HIRRPQLLFGTP 174
Query: 180 VDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLY-VPKEDFL-KCEE 237
VDNS F P+ + +Y + HP+E + + VP+ L + E
Sbjct: 175 VDNSAAP-FVPRYYDASG----------QYHVGVAGQHPFESVIKTFSVPESQMLPRAEV 223
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK 297
P +PL PL + + +V++L EIA+DLE+H++ SYQG+TCLMQISTR++
Sbjct: 224 PP--VPLDACPLTFVDTTAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGFTCLMQISTREE 281
Query: 298 DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL 357
D+IVD LKLR + L V + +I+KVFHGA DI+WLQKDF LYVV FDT A + L
Sbjct: 282 DFIVDCLKLRSSMGALAPVFLNPSILKVFHGAREDIRWLQKDFSLYVVNFFDTGVALQTL 341
Query: 358 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL- 416
MP SLA+ + H+C V +K +Q DWR RPL + YAR DTH+LLYV+D +K L
Sbjct: 342 HMP-YSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVHDRLKALLL 400
Query: 417 -SAAAHGKQNLVLSTFTNSRNICKLKYEKP-VFNEEGY-MNIFRSHALLNNQQKYALREL 473
S +L++ + S+ + YEKP V EE Y + + RS + LN Q+ ++
Sbjct: 401 NSEGRASIGSLLVHVYNESKQLSLQIYEKPNVVPEETYKIALGRSLSGLNKVQEKVACDV 460
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
+ WRD AR+ D+S VL +L +A +P + + CC P V+++V + ++
Sbjct: 461 FNWRDSAAREVDDSPMAVLHLSSVLSIASKLPTTAKELLRCCAPATAVVRDNVALLVDLV 520
Query: 534 LKARLQSLTKPVEKLQPSL 552
A + + V L+P+L
Sbjct: 521 KDAVARGEDEVVTNLRPTL 539
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q+ +++ WRD AR+ D+S VL +L +A +P + + CC P V
Sbjct: 450 NKVQEKVACDVFNWRDSAAREVDDSPMAVLHLSSVLSIASKLPTTAKELLRCCAPATAVV 509
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSL 659
+++V + ++ A + + V L+P+L
Sbjct: 510 RDNVALLVDLVKDAVARGEDEVVTNLRPTL 539
>gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera]
Length = 931
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 200/344 (58%), Gaps = 25/344 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYE-YELDLYV 227
I RPQ +F + V+NS Q F+ + L++ D F HP E L +V
Sbjct: 181 IPRPQDEFNILVNNS-NQPFQ-------------HVWLQRSDDGLRFIHPLEKLSLLDFV 226
Query: 228 PKE--DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
K D + P + DTP ++ E + +L ++L E A+DLE++ YRS+QG
Sbjct: 227 DKNIGDLMPVMPPS----IEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQG 282
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D++VDTLKLR + L EV D KV HGAD DI WLQ+DFG+Y+
Sbjct: 283 LTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYI 342
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
MFDT QA + L + R SL +LL HYC V ++K +Q DWR RPLP ++YAR DTHY
Sbjct: 343 CNMFDTGQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHY 402
Query: 405 LLYVYDCMKLDLSAAA--HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHAL 461
LL++YD M+ L + A L+L + S +IC YEK + + Y+ + A
Sbjct: 403 LLHIYDLMRTQLLSMAELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAH 462
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N QQ + L++WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 463 FNAQQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMP 506
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ + L++WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 464 NAQQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMP 506
>gi|388857402|emb|CCF49076.1| related to RRP6-Exonuclease component of the nuclear exosome
[Ustilago hordei]
Length = 1006
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 169/510 (33%), Positives = 258/510 (50%), Gaps = 65/510 (12%)
Query: 98 LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKK--- 154
L E D L+ES +T +D G P + +Q + ++A N K
Sbjct: 161 LGELVDHLMESADTCLDEYTGKLAPRNVAAQENSAGGAQTESANGRMQAMTAVQNGKALP 220
Query: 155 KSANW--FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK-EKPNALKPL--------- 202
K+ N ++LN I PQ F K DNS + L++P LK KPNA+ PL
Sbjct: 221 KTGNLPSWVLN---APIPPPQKNFTTKADNSTDTLWQPNLKYGKPNAMVPLGHTNPQRLG 277
Query: 203 --AILLEKYDAIESFC-------HPYEYELDLYVPKEDFLKCEEPKQ------------- 240
L + +C +PY +E+ P L +P
Sbjct: 278 ADGQTLPRGPRRGMYCAEGDPLDNPYYHEILHSSPPIHALSKPDPATKDNPPPRLNEKDP 337
Query: 241 ALPLSDTPLMMITEPEQVTQLVSELKQQQ--EIAIDLEYHNYRSYQGYTCLMQISTRDKD 298
+L P ++ Q+ QL L + + EIAIDLE+H+YR+YQG CLMQ+STR D
Sbjct: 338 SLSTDACPFQWVSTKAQIEQLRDHLDEDRVKEIAIDLEHHSYRTYQGIVCLMQLSTRWGD 397
Query: 299 YIVDTL--KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF 356
+I+DTL ++R+ E+LN TD + VKV HGA+ D+ WLQ+D GLY+V +FDT+ A
Sbjct: 398 WIIDTLSDEVRQHAELLNSSFTDPSKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHATNV 457
Query: 357 LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
L P L YL+ YC+ D+DK +QL DWR RPLP+ + YAR+DTH LLY+YD ++ +L
Sbjct: 458 LMFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIYDNLRHEL 517
Query: 417 SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE-----EGYMNIFR---SHALLNNQQKY 468
+ G + + F S+++ Y K ++ EG+ +++R A L + +
Sbjct: 518 MES--GGLDAIREVFNRSKDVAMSTYAKEEWDSQGETREGWRSVWRKWGGEAALGTEDRR 575
Query: 469 AL----------RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPV 518
L R L+KWRD +AR++DES Y+L + L+ +A P +G+ AC P
Sbjct: 576 ELSQMKKEERLVRALHKWRDGVAREEDESPRYILGANNLMMLAARAPVKPEGVLACVPPN 635
Query: 519 PQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
+K+ + ++ A ++K +++ K EKL
Sbjct: 636 ASGLKKRIGEL-AKLIKDEVEAWEKHQEKL 664
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
+R L+KWRD +AR++DES Y+L + L+ +A P +G+ AC P +K+ + ++
Sbjct: 587 VRALHKWRDGVAREEDESPRYILGANNLMMLAARAPVKPEGVLACVPPNASGLKKRIGEL 646
Query: 637 HAIILKARLQPLTKPVEKL 655
A ++K ++ K EKL
Sbjct: 647 -AKLIKDEVEAWEKHQEKL 664
>gi|344304844|gb|EGW35076.1| hypothetical protein SPAPADRAFT_53425 [Spathaspora passalidarum
NRRL Y-27907]
Length = 756
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/415 (36%), Positives = 228/415 (54%), Gaps = 49/415 (11%)
Query: 163 NKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYE 222
N+ I +PQL+F+V VDNS F+P+L KP+ALK ++++ F +YE
Sbjct: 127 NESGKRISKPQLKFRVPVDNSESHPFKPRLDSKPHALKSFE------ESVKLFNPEPKYE 180
Query: 223 LDLYV-------------------PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVS 263
+ + P+ EP + S T + + E++T++V+
Sbjct: 181 DSIEIIDPPYYPQPYEYEIDNQPYPEAILQSAVEPIPSKDWSTTEAIWVDTVEELTKMVT 240
Query: 264 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIV 323
L+ EIA+DLE+H+YR+Y G CLMQIS RD+D+I+DTL LR+DL VLN V TD +IV
Sbjct: 241 VLQSSTEIAVDLEHHDYRTYYGIVCLMQISNRDQDWIIDTLALRDDLTVLNTVFTDPSIV 300
Query: 324 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF 383
KVFHGA DI WLQ+D GLY+V +FDT+ A K L P+ SLAYLL+ + + K +QL
Sbjct: 301 KVFHGAFMDIIWLQRDLGLYIVSLFDTYCASKNLGFPKHSLAYLLETFAHFKTSKKYQLA 360
Query: 384 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE 443
DWR RPL P + YAR+DTH+LL +YD ++ L +N + +SR + K ++E
Sbjct: 361 DWRIRPLSHPMMAYARSDTHFLLNIYDQLRNKLI-----HENKLQQVLYDSRQVAKRRFE 415
Query: 444 K--------------PVFN---EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
PV + E + +I + + + +K + LY WRD +A+ +DE
Sbjct: 416 YTKYRPLAPNGKVSCPVMSSNPREPFASIMYQYN-VPSFKKGVVEVLYNWRDLVAKQEDE 474
Query: 487 STGYVLPNHMLLQMA-QSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
S Y++PN +L+ +A P D + C V + V+ H ++ +I K +Q+
Sbjct: 475 SVRYIMPNQLLVTLALLESPVDANKVLNCQTYVSEHVRLHAKELAGLIEKTLVQT 529
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA-QSIPRDIQGIFACCNPVPQTVKE 631
+K + LY WRD +A+ +DES Y++PN +L+ +A P D + C V + V+
Sbjct: 454 KKGVVEVLYNWRDLVAKQEDESVRYIMPNQLLVTLALLESPVDANKVLNCQTYVSEHVRL 513
Query: 632 HVLDIHAIILKARLQ 646
H ++ +I K +Q
Sbjct: 514 HAKELAGLIEKTLVQ 528
>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
Length = 901
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 200/344 (58%), Gaps = 25/344 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYE-YELDLYV 227
I RPQ +F + V+NS Q F+ + L++ D F HP E L +V
Sbjct: 151 IPRPQDEFNILVNNS-NQPFQ-------------HVWLQRSDDGLRFIHPLEKLSLLDFV 196
Query: 228 PKE--DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
K D + P + DTP ++ E + +L ++L E A+DLE++ YRS+QG
Sbjct: 197 DKNIGDLMPVMPPS----IEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQG 252
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D++VDTLKLR + L EV D KV HGAD DI WLQ+DFG+Y+
Sbjct: 253 LTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYI 312
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
MFDT QA + L + R SL +LL HYC V ++K +Q DWR RPLP ++YAR DTHY
Sbjct: 313 CNMFDTGQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHY 372
Query: 405 LLYVYDCMKLDLSAAA--HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHAL 461
LL++YD M+ L + A L+L + S +IC YEK + + Y+ + A
Sbjct: 373 LLHIYDLMRTQLLSMAELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAH 432
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N QQ + L++WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 433 FNAQQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMP 476
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ + L++WRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 434 NAQQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMP 476
>gi|343471692|emb|CCD15945.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 604
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 178/543 (32%), Positives = 273/543 (50%), Gaps = 54/543 (9%)
Query: 25 LVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVD---SLLKTQN 81
LV A+ + TK A + + +A + ++ S+ V+T++D LL ++
Sbjct: 43 LVHGAFSLVKAYTKLAAEL-AAEDYDYHMAFTGFRQQISRHSEAVVTVMDKCCQLLPSKR 101
Query: 82 ---ISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNK 138
+S KL Q+ + EA D LLE+++ +D + G + + K
Sbjct: 102 RVVLSDGTGKLS-SLQRAAVMEAADSLLENVDGLLDELRGRRLSA--------------K 146
Query: 139 NAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNA 198
+ E+ S L V I RPQL F+ VDN+ EK
Sbjct: 147 EQLSVKFGSELQGPATASGG---LTGSGVNITRPQLTFEHPVDNTATPFCPVYYDEK--G 201
Query: 199 LKPLAILLEKYDAIESFCHPYEYEL--DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPE 256
++ + E HP+ + + LK E P LPL PL + E
Sbjct: 202 IRHVG---------EPGVHPFAERIKNASISSAQLLLKTETPY--LPLDSCPLTFVDAVE 250
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
+ +V+ L ++ EIA+DLE+H++ SYQG+TCLMQIS+R +D+I+D LKLR + +L V
Sbjct: 251 SLQAVVAVLLKETEIAVDLEHHDFYSYQGFTCLMQISSRTEDFIIDCLKLRSHMHLLAPV 310
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
+ +IVKV HGA DI+WLQKDFGLYVV +FDT A + L MP SLA+ + H+C V
Sbjct: 311 FLEPSIVKVLHGAREDIRWLQKDFGLYVVNLFDTSVALQNLHMP-HSLAFAVDHFCQVKL 369
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL----SAAAHGKQNLVLSTFT 432
+K +Q DWR RP+P I YA+ DTH+LLYVYD +K L S A G N+++ F
Sbjct: 370 NKKYQTADWRVRPIPAEMISYAQQDTHFLLYVYDRLKQLLLNCESRATVG--NMLVHVFQ 427
Query: 433 NSRNICKLKYEKPVFNEEGY--MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
SR + +YEKP + + + + RS L+ Q RE++ WRD AR+ D+S
Sbjct: 428 ESRALSLERYEKPQLDPDATYKLALGRSLGGLSLSQLQVAREIFNWRDAAAREADDSPSA 487
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
V+ +L +A +P + CC+PV V+ +V+ + I+ +S+T E ++
Sbjct: 488 VMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTNVMKLLQIV-----KSVTGGTESVKD 542
Query: 551 SLD 553
+D
Sbjct: 543 GVD 545
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
RE++ WRD AR+ D+S V+ +L +A +P + CC+PV V+ +V+ +
Sbjct: 468 REIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTNVMKLL 527
Query: 638 AIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGL 686
I+ + +T E ++ DG+ ++ +P L+Y G+
Sbjct: 528 QIV-----KSVTGGTESVK---DGVDDGAVSRKCAPAGGVGAALHYVGV 568
>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
gi|134073021|emb|CAM71740.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
Length = 743
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 168/491 (34%), Positives = 255/491 (51%), Gaps = 37/491 (7%)
Query: 53 IASPNYISGVAGTSDKVMTLVDSL-----------LKTQNISKSMSKLYLEGQKDILTEA 101
IA P + + S+ ++ L+D+ L + +S + LE + + EA
Sbjct: 43 IAFPGFRKHIHDDSETLVALMDACTQMLPKRRRTSLSAEADPRSGALHLLETDRTTVMEA 102
Query: 102 NDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFM 161
D LLES+++ +D + G + L +Q ++ ++ A + N V SA +
Sbjct: 103 VDSLLESVDSLLDEVKGRR----LDAQEQLSVTFGSELAASQNREGGVVVADAASARAGV 158
Query: 162 LNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEY 221
L I RPQL F VDNS F P + + + + HP+E
Sbjct: 159 LRLA--HIRRPQLLFDTPVDNSAAP-FVPYYYDASG---------QSHVGVAG-QHPFES 205
Query: 222 ELDLY-VPKEDFL-KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHN 279
+ + +P+ L + E P +PL PL + + ++++L EIA+DLE+H+
Sbjct: 206 LIKAFSIPESQMLPRAEVPP--VPLDACPLTFVDTSVAMQAMIAKLLLASEIAVDLEHHD 263
Query: 280 YRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKD 339
+ SYQG+TCLMQISTR++D+IVD LKLR + L V + +I+KV HGA DI+WLQKD
Sbjct: 264 FYSYQGFTCLMQISTREEDFIVDCLKLRSSMGALAPVFLNPSILKVLHGAREDIRWLQKD 323
Query: 340 FGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYAR 399
F LYVV FDT A + L MP SLA+ + H+C V +K +Q DWR RPL + YAR
Sbjct: 324 FSLYVVNFFDTGVALQTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYAR 382
Query: 400 TDTHYLLYVYDCMKLDL--SAAAHGKQNLVLSTFTNSRNICKLKYEKP-VFNEEGY-MNI 455
DTH+LLYVYD +K L S +L++ + S+ + YEKP V EE Y + +
Sbjct: 383 QDTHFLLYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSLQIYEKPSVVPEETYKIAL 442
Query: 456 FRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
RS + LN Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC
Sbjct: 443 GRSLSGLNKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCC 502
Query: 516 NPVPQTVKEHV 526
P V+++V
Sbjct: 503 APATAVVRDNV 513
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC P V
Sbjct: 450 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVV 509
Query: 630 KEHV 633
+++V
Sbjct: 510 RDNV 513
>gi|398022862|ref|XP_003864593.1| unnamed protein product [Leishmania donovani]
gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani]
Length = 743
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 168/491 (34%), Positives = 255/491 (51%), Gaps = 37/491 (7%)
Query: 53 IASPNYISGVAGTSDKVMTLVDSL-----------LKTQNISKSMSKLYLEGQKDILTEA 101
IA P + + S+ ++ L+D+ L + +S + LE + + EA
Sbjct: 43 IAFPGFRKHIHDDSETLVALMDACTQMLPKRRRTSLSAEADPRSGALHLLETDRTTVMEA 102
Query: 102 NDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFM 161
D LLES+++ +D + G + L +Q ++ ++ A + N V SA +
Sbjct: 103 VDSLLESVDSLLDEVKGRR----LDAQEQLSVTFGSELAASQNREGGVVVADAASARAGV 158
Query: 162 LNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEY 221
L I RPQL F VDNS F P + + + + HP+E
Sbjct: 159 LRLA--HIRRPQLLFDTPVDNSAAP-FVPYYYDASG---------QSHVGVAG-QHPFES 205
Query: 222 ELDLY-VPKEDFL-KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHN 279
+ + +P+ L + E P +PL PL + + ++++L EIA+DLE+H+
Sbjct: 206 VIKAFSIPESQMLPRAEVPP--VPLDACPLTFVDTSVAMQAMIAKLLLASEIAVDLEHHD 263
Query: 280 YRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKD 339
+ SYQG+TCLMQISTR++D+IVD LKLR + L V + +I+KV HGA DI+WLQKD
Sbjct: 264 FYSYQGFTCLMQISTREEDFIVDCLKLRSSMGALAPVFLNPSILKVLHGAREDIRWLQKD 323
Query: 340 FGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYAR 399
F LYVV FDT A + L MP SLA+ + H+C V +K +Q DWR RPL + YAR
Sbjct: 324 FSLYVVNFFDTGVALQTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYAR 382
Query: 400 TDTHYLLYVYDCMKLDL--SAAAHGKQNLVLSTFTNSRNICKLKYEKP-VFNEEGY-MNI 455
DTH+LLYVYD +K L S +L++ + S+ + YEKP V EE Y + +
Sbjct: 383 QDTHFLLYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSLQIYEKPSVVPEETYKIAL 442
Query: 456 FRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 515
RS + LN Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC
Sbjct: 443 GRSLSGLNKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCC 502
Query: 516 NPVPQTVKEHV 526
P V+++V
Sbjct: 503 APATAVVRDNV 513
Score = 47.4 bits (111), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC P V
Sbjct: 450 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVV 509
Query: 630 KEHV 633
+++V
Sbjct: 510 RDNV 513
>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
Length = 738
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 223/396 (56%), Gaps = 28/396 (7%)
Query: 164 KGAVEIE-RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEKYDAIES------ 214
K A E++ +PQ F+ VDNS F+P+L+ KP ALK L ++ L D +
Sbjct: 124 KKATEVKVKPQENFRSTVDNSDSSPFKPRLENKPYALKSLEESLKLRFPDPTDDGKVSAP 183
Query: 215 -FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 273
+ HPYE+E+ E L+ +P + + T + + + +++ L+ EIAI
Sbjct: 184 HYAHPYEFEIMNQPYPESCLQVNKPVPSTDWATTAAKWVDTVDALQEMIEALRSSTEIAI 243
Query: 274 DLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDI 333
DLE+H+YRSY G TCLMQIS R++D+IVDTL L +DL LNE+ + I+KV HGA+ DI
Sbjct: 244 DLEHHDYRSYYGITCLMQISNREQDWIVDTLALHDDLRDLNEIFANPAILKVLHGANMDI 303
Query: 334 KWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 393
WLQ+D GLY+V +FDT+ A K L P+ SLAYLL+++ + K +QL DWR RPL +
Sbjct: 304 IWLQRDLGLYIVSLFDTYHASKKLGFPKFSLAYLLENFAHFKTSKKYQLADWRIRPLTDA 363
Query: 394 AIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYM 453
+QYAR DTH+LL +YD ++ L A GK VL SR + ++E F ++
Sbjct: 364 MMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVL---YESRKVASRRFEFNSFKQDQTD 420
Query: 454 NIFRSHALLNNQQKYALRE-------------LYKWRDRIARDKDESTGYVLPNHMLLQM 500
N S+ + Q+++ + + L WRD++AR+KDEST Y++ N +L +
Sbjct: 421 NWMHSYGGM-GQERWVMNQYNIEPERIEIVQALINWRDKVAREKDESTRYIMSNQVLANL 479
Query: 501 AQSI-PRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
+ + P D + V+++ ++ +I K
Sbjct: 480 SSLVAPVDASKVHNAAGSQYSIVRQNSKELAELIEK 515
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI-PRDIQGIFACCNPVPQTVKEHVLD 635
++ L WRD++AR+KDEST Y++ N +L ++ + P D + V+++ +
Sbjct: 449 VQALINWRDKVAREKDESTRYIMSNQVLANLSSLVAPVDASKVHNAAGSQYSIVRQNSKE 508
Query: 636 IHAIILK 642
+ +I K
Sbjct: 509 LAELIEK 515
>gi|340053178|emb|CCC47466.1| putative ribosomal RNA processing protein 6 [Trypanosoma vivax
Y486]
Length = 709
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 159/446 (35%), Positives = 233/446 (52%), Gaps = 38/446 (8%)
Query: 94 QKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNK 153
Q+ + EA D LLE+++ +D + G + + ++ + E+
Sbjct: 84 QRAAVMEAADSLLENVDGLLDELRGRRLSA--------------RDQLSVKFGSELEGAL 129
Query: 154 KKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIE 213
SA+ GA + RPQL F VDNS F P ++ + E
Sbjct: 130 VPSAHGI---SGA-HVLRPQLTFDRPVDNSSAP-FCPMYHDENGT----------FHVGE 174
Query: 214 SFCHPYEYEL-DLYVPKEDFL-KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEI 271
HP+ ++ +P+E L K E P LPLS PL + + LV L Q EI
Sbjct: 175 PGVHPFAEQIKSAPIPEEQLLRKAETP--FLPLSSCPLTFVDTVAGLEDLVKVLLIQGEI 232
Query: 272 AIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 331
A+DLE+H++ SYQG+TCL+QISTR +D+I+D LKLR + +L+ V I+KV HGA
Sbjct: 233 AVDLEHHDFYSYQGFTCLVQISTRTQDFIIDCLKLRASMHLLSPVFLSPRIIKVLHGARE 292
Query: 332 DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 391
DI+WLQKDFG+YVV +FDT A + L MP SLA+ + H+C V DK +Q DWR RP+P
Sbjct: 293 DIRWLQKDFGIYVVNLFDTSIALQQLHMP-YSLAFAVDHFCQVKLDKKYQTADWRVRPIP 351
Query: 392 EPAIQYARTDTHYLLYVYD--CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
+ YA+ DTH+LLY+YD C L A NL+L F SR + +YEKPV
Sbjct: 352 IEMVSYAQQDTHFLLYIYDRLCALLLNCEARPSVGNLLLHVFQESRLLSLERYEKPVLEP 411
Query: 450 EGY--MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
+ + + RS L+ Q +E++ WRD AR+ D+S V+ +L +A +P
Sbjct: 412 DVTYKVALGRSLGGLSKAQLQVAQEIFNWRDGAAREADDSPSAVMHLSSVLSIATRLPSS 471
Query: 508 IQGIFACCNPVPQTVKEHVLDIHAII 533
+ CC+PV V+ +V+ + I+
Sbjct: 472 ANDVLRCCSPVSVIVRTNVMKLLQIV 497
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 548 LQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQM 607
L SL G+ K Q Q +E++ WRD AR+ D+S V+ +L +
Sbjct: 419 LGRSLGGLSKAQLQ--------------VAQEIFNWRDGAAREADDSPSAVMHLSSVLSI 464
Query: 608 AQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 640
A +P + CC+PV V+ +V+ + I+
Sbjct: 465 ATRLPSSANDVLRCCSPVSVIVRTNVMKLLQIV 497
>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
Group]
gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
Length = 600
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 213/374 (56%), Gaps = 25/374 (6%)
Query: 169 IERPQLQFKVKVDN---SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ + ++V+N ++ ++ + ++ + PL L P E +D
Sbjct: 80 IPRPQDVYAIRVNNYNVPFDHVWLERTEDGSRPIHPLEKL------------PMEQFIDR 127
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP+ EP + L DTP ++ + + L +LK E A+DLE++ YRS+QG
Sbjct: 128 NVPES------EPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQG 181
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D++VDTLKLR + + L E D KV HGAD DI WLQ+DF +YV
Sbjct: 182 LTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYV 241
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L M R SL +LL+H+C V ++K +Q DWR RPL + I+YAR DTHY
Sbjct: 242 CNLFDTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHY 301
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF--RSHALL 462
LLY+YD M+L L + +L+L S IC YEK + + Y++I+ + H L
Sbjct: 302 LLYMYDLMRLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHD-L 360
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
+ +Q + L++WRD IAR+ DESTGYVLPN L+++A+ +P D + V
Sbjct: 361 DAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFV 420
Query: 523 KEHVLDIHAIILKA 536
E++ + II A
Sbjct: 421 DENLDQVVGIIWNA 434
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 626
HD + +Q + L++WRD IAR+ DESTGYVLPN L+++A+ +P D +
Sbjct: 358 HDLDAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKY 417
Query: 627 QTVKEHVLDIHAIILKA 643
V E++ + II A
Sbjct: 418 PFVDENLDQVVGIIWNA 434
>gi|400601943|gb|EJP69568.1| 3'-5' exonuclease [Beauveria bassiana ARSEF 2860]
Length = 802
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 168/540 (31%), Positives = 275/540 (50%), Gaps = 50/540 (9%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
F L S+V K A + + +P+ + S +++ L LL++
Sbjct: 7 FKSLQDGVQNSLVATVKYANRIAAEDLSFQRTVNPDAAEQLDENSSRLLELSTRLLQSAA 66
Query: 82 ISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGT----KTPSVLPSQPKI 131
+ ++ L+ DI + + D +LE +T +D G + PS +PK
Sbjct: 67 RACGVAAPTLKDADDIDLNWQGVVDVVDSVLEKADTALDEYTGLIKRKEPPSDATPKPKK 126
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
K + NK + +NV +PQ+ F+++ DN ++P
Sbjct: 127 AKPT-NKVIRNANV------------------------VKPQVTFELQPDNFPTGPWKPI 161
Query: 192 LKEKPNALKPLA---ILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTP 248
L +KP+A+ PL I + + HPYE E+ + K +P P+ T
Sbjct: 162 LTKKPHAIVPLEESLITFTDENGSTQYKHPYEPEILQMAYPDSIFKVAKPIPWQPVETTT 221
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LR 307
+ E V +++ ELK+ +E+AIDLE+H++R+Y G LMQISTR +D+IVDTL+ R
Sbjct: 222 AKWVDTYEGVLEMLQELKKSKELAIDLEHHDFRTYTGLVSLMQISTRQQDWIVDTLQPWR 281
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
LE+LNE D +I+KVFHGA D+ WLQ+D GLYV G+FDT AC+ L +SLA+L
Sbjct: 282 HKLEILNEAFADPSIIKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACEQLGYSGRSLAFL 341
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH---GKQ 424
L + D D+DK +QL DWR RP+PE + YAR+DTHYLL++YD ++ DL ++++ +Q
Sbjct: 342 LSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHIYDQVRNDLVSSSNRSAPEQ 401
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEE------GYMNIFRSHALL--NNQQKYALRELYKW 476
+L+ S+++ ++ + EE G+ N H+ L + Q + ++KW
Sbjct: 402 DLIGRALQKSKDLSLSRHVHAGYQEENGEGPRGWYNYLLKHSHLSYDAAQFTMFKTIWKW 461
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RD AR +DES +VL + L + ++ P D + + + + + +I A +L+A
Sbjct: 462 RDDTARKEDESPNFVLGTNHLADICRANPPDAKALHSLMPLTAPLARSRINEIWARVLEA 521
>gi|443898900|dbj|GAC76233.1| exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100
[Pseudozyma antarctica T-34]
Length = 917
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 166/499 (33%), Positives = 250/499 (50%), Gaps = 66/499 (13%)
Query: 98 LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQE---VHDNKK 154
L E D LLES +T +D G P L + A A Q V + K
Sbjct: 153 LGELVDHLLESADTCLDEYTGKLAPRSLANAATADSNGDADAASAHGRMQAMTAVQNGKA 212
Query: 155 --KSANW--FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK-EKPNALKPLAIL---- 205
K+ N ++LN I PQ F K DNS L++P+LK KPNA+ PL +
Sbjct: 213 LPKTGNLPAWVLN---APIPPPQRNFTTKPDNSPHTLWQPRLKYGKPNAVVPLGHINQPR 269
Query: 206 -------LEKYDAIESFC-------HPYEYELDLYVPKEDFLKCEEPKQ----------- 240
L + +C +PY +E+ P L EP+
Sbjct: 270 LGADGQPLPRGPRRGMYCAEGDPLDNPYYHEILHAHPPTHALSKSEPRAKDQPPPPLNEK 329
Query: 241 --ALPLSDTPLMMITEPEQVTQLVSELKQQQ--EIAIDLEYHNYRSYQGYTCLMQISTRD 296
+L +P ++ Q+ L L + + EIAIDLE+H+YR+YQG CLMQ+STR
Sbjct: 330 DPSLSTDTSPFQWVSTKAQIEALRDHLDEPRVTEIAIDLEHHSYRTYQGIVCLMQLSTRW 389
Query: 297 KDYIVDTL--KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
D+I+DTL ++R+ E+LN T + VKV HGA+ D+ WLQ+D GLY+V +FDT+ A
Sbjct: 390 GDWIIDTLSDEVRQHAELLNSAFTHPDKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHAT 449
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
L P L YL+ YC+ D+DK +QL DWR RPLP+ + YAR+DTH LLY+YD ++
Sbjct: 450 NVLLFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIYDNLRH 509
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN-----EEGYMNIFR---SHALLNNQQ 466
+L A G + + F S+ + Y K ++ EG+ +++R A L ++
Sbjct: 510 ELMEA--GGVDAIRDVFVRSKEVAMATYAKEEWDAEGETREGWRSVWRKWGGEAALGTEE 567
Query: 467 KYA----------LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
+ +R L++WRD +AR++DES Y+L + L+ +A P ++G+ AC
Sbjct: 568 RREVGQMKREERLVRALHRWRDGVAREQDESPRYILGANNLMMLAARAPTKVEGVLACIP 627
Query: 517 PVPQTVKEHVLDIHAIILK 535
P +K+ ++ +I K
Sbjct: 628 PNAAQLKKRAAELAQLIAK 646
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
+R L++WRD +AR++DES Y+L + L+ +A P ++G+ AC P +K+ ++
Sbjct: 581 VRALHRWRDGVAREQDESPRYILGANNLMMLAARAPTKVEGVLACIPPNAAQLKKRAAEL 640
Query: 637 HAIILK 642
+I K
Sbjct: 641 AQLIAK 646
>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
Length = 599
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 213/374 (56%), Gaps = 25/374 (6%)
Query: 169 IERPQLQFKVKVDN---SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ + ++V+N ++ ++ + ++ + PL L P E +D
Sbjct: 79 IPRPQDVYAIRVNNYNVPFDHVWLERTEDGSRPIHPLEKL------------PMEQFIDR 126
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP+ EP + L DTP ++ + + L +LK E A+DLE++ YRS+QG
Sbjct: 127 NVPES------EPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQG 180
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D++VDTLKLR + + L E D KV HGAD DI WLQ+DF +YV
Sbjct: 181 LTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYV 240
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L M R SL +LL+H+C V ++K +Q DWR RPL + I+YAR DTHY
Sbjct: 241 CNLFDTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHY 300
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF--RSHALL 462
LLY+YD M+L L + +L+L S IC YEK + + Y++I+ + H L
Sbjct: 301 LLYMYDLMRLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHD-L 359
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
+ +Q + L++WRD IAR+ DESTGYVLPN L+++A+ +P D + V
Sbjct: 360 DAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFV 419
Query: 523 KEHVLDIHAIILKA 536
E++ + II A
Sbjct: 420 DENLDQVVGIIWNA 433
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 626
HD + +Q + L++WRD IAR+ DESTGYVLPN L+++A+ +P D +
Sbjct: 357 HDLDAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKY 416
Query: 627 QTVKEHVLDIHAIILKA 643
V E++ + II A
Sbjct: 417 PFVDENLDQVVGIIWNA 433
>gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 877
Score = 255 bits (652), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 204/348 (58%), Gaps = 29/348 (8%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYE--YELDLY 226
I RPQ ++ + V+N+ FE + L++ D F HP E LD
Sbjct: 187 IRRPQDEYSIVVNNA-NMPFE-------------HVWLQRSDDGLRFIHPLEKLSVLDFV 232
Query: 227 VPK-EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
ED + + P + TP ++ E + + +LV++L+ E A+DLE++ YRS+QG
Sbjct: 233 DTNLEDVVPVKPPS----IESTPFKLVQEVKDLKELVAKLRSVNEFAVDLEHNQYRSFQG 288
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D++VDTLKLR + L E+ D KV HGAD DI WLQ+DFG+Y+
Sbjct: 289 LTCLMQISTRTEDFVVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIVWLQRDFGIYI 348
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDTHQA K L + R SL ++L H+C+V ++K +Q DWR RPLP ++YAR DTHY
Sbjct: 349 CNLFDTHQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPNEMLRYAREDTHY 408
Query: 405 LLYVYDCMKLDLSAAAHGKQNLV------LSTFTNSRNICKLKYEKPVFNEEGYMNIFR- 457
LLY+YD M++ L A + ++ + + S ++C YEK E Y++I+
Sbjct: 409 LLYIYDLMRIRLFALSKESESSESSDTPPVEVYKRSYDVCMQLYEKEFLTENSYLHIYGL 468
Query: 458 SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
A N QQ + L +WRD +AR +DESTGYVLPN +L++A+ +P
Sbjct: 469 QGAGFNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMP 516
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ + L +WRD +AR +DESTGYVLPN +L++A+ +P
Sbjct: 474 NAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMP 516
>gi|356514082|ref|XP_003525736.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 506
Score = 255 bits (652), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 194/308 (62%), Gaps = 6/308 (1%)
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK 297
P +A P+ TP ++ + + +L ++L E A+DLE++ YR++QG TCLMQISTR +
Sbjct: 69 PVKAPPIESTPFKLVETVQDLKELAAKLHSADEFAVDLEHNQYRTFQGLTCLMQISTRTE 128
Query: 298 DYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF 356
D+IVDTLKL + L EV D + KV HGAD+D+ WLQ+DFG+Y+ +FDTHQA K
Sbjct: 129 DFIVDTLKLHSSIGPYLREVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDTHQASKV 188
Query: 357 LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
L + R+SL YLL H+CD+ ++K +Q DWR RPLP ++YAR DTHYLLY+YD M+++L
Sbjct: 189 LKLERKSLEYLLCHFCDITANKEYQSADWRLRPLPYEMLRYAREDTHYLLYIYDFMRIEL 248
Query: 417 SAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRE 472
+ +++ ++ + S +C YEK + E+ ++ I+ A N QQ +
Sbjct: 249 FSMLKEPESVDAPLVEVYKCSYKVCMRLYEKELLTEKSFLRIYGLQGAGFNAQQLAVVSG 308
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI 532
L+KWRD +AR KD+STGYVLPN +L++A+ +P + N V EH LD
Sbjct: 309 LFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYV-EHNLDSLVN 367
Query: 533 ILKARLQS 540
I++ +Q+
Sbjct: 368 IIRHSIQN 375
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ + L+KWRD +AR KD+STGYVLPN +L++A+ +P + N V
Sbjct: 299 NAQQLAVVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYV 358
Query: 630 KEHVLDIHAIILKARLQ 646
EH LD I++ +Q
Sbjct: 359 -EHNLDSLVNIIRHSIQ 374
>gi|388579133|gb|EIM19461.1| hypothetical protein WALSEDRAFT_61456 [Wallemia sebi CBS 633.66]
Length = 789
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 168/525 (32%), Positives = 259/525 (49%), Gaps = 50/525 (9%)
Query: 22 FDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIA-SPNYISGVAGTSDKVMTLVDSLLK-T 79
D+ ++N KS + TK +++ + + S + + S D V+ ++ L+
Sbjct: 8 IDLKIKNLQKSAINLTKISKNLLKSDDLSFQKSIDSGFSSRCEEIEDGVVDNINQLIGFI 67
Query: 80 QNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKN 139
N S+ + L G + E D+LLE + ID ++NK
Sbjct: 68 NNKSRHLDADDLTGDSKAVGELVDQLLEDSSINIDKHTN----------------NYNKP 111
Query: 140 AKASNVWQEVHDNKKKSANWFMLNKGAVEIER-PQLQFKVKVDNSYEQLFEPKLKEKPNA 198
A ++ + ++K I+R PQL++ +DNS + ++P L KPNA
Sbjct: 112 TLAKDLEPSIFNDK--------------SIQRKPQLKWSSSIDNS-DSPWKPLLTHKPNA 156
Query: 199 LKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQV 258
L + HPY+ E++ LK + P + + TP I E +
Sbjct: 157 KADLTWTT----VDDRLSHPYQTEIESIKYPAQQLKTQTPIKQGDFNQTPFKWIDNEESL 212
Query: 259 TQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLT 318
L+ L EIAIDLE+H++RSY+G+ CLMQIS R +D+I+DTL+LR+ L LN+ T
Sbjct: 213 NYLLDRLSTATEIAIDLEHHDFRSYRGFVCLMQISIRGEDFIIDTLELRDQLIKLNDTFT 272
Query: 319 DKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK 378
+ IVKVFHGADSDI WLQ+DFG+Y+V MFDT+ A K L + SLA LL +C DK
Sbjct: 273 NPAIVKVFHGADSDIVWLQRDFGVYIVNMFDTYHATKVLGFSQHSLASLLIKFCGYTPDK 332
Query: 379 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNIC 438
+Q DWR RPL ++YAR+DTHYLLY+YD ++ L + K +++ S +
Sbjct: 333 RYQRADWRKRPLTNKMLEYARSDTHYLLYIYDMLRNTLIEKSSKKNDMLKDVLQRSEQVS 392
Query: 439 KLKYEKPVFNEEGYMNIFRSHALLNNQQKY-------ALRELYKWRDRIARDKDESTGYV 491
+ + ++ + + L K R L++WRD+IAR +DES +
Sbjct: 393 LKTHHRDPYDYDTGKGFGGWYNLATKWNKVVEPPLLEVFRRLHQWRDQIARKEDESVHVI 452
Query: 492 LPNHMLLQMA---QSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
NH L +A P++I +F VPQ V+ H+ D+ I
Sbjct: 453 FSNHQLYDLALKQPKTPQEITNVFQ--KKVPQFVRIHLKDVAQCI 495
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMA---QSIPRDIQGIFACCNPVPQTVKEH 632
R L++WRD+IAR +DES + NH L +A P++I +F VPQ V+ H
Sbjct: 430 VFRRLHQWRDQIARKEDESVHVIFSNHQLYDLALKQPKTPQEITNVFQ--KKVPQFVRIH 487
Query: 633 VLDIHAII 640
+ D+ I
Sbjct: 488 LKDVAQCI 495
>gi|414871321|tpg|DAA49878.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 532
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 144/334 (43%), Positives = 192/334 (57%), Gaps = 29/334 (8%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ + + VDNS +E + + ++ + PL L P E +
Sbjct: 198 IPRPQDVYCIVVDNSSKPFEHILLDRSEDGTRVVHPLEKL------------PVEQIISR 245
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP EP + L +TP + + + + L ++LK E A+DLE+++YRS+QG
Sbjct: 246 NVPDN------EPVKPPALDNTPFTFVEDLKTLEVLATKLKDATEFAVDLEHNHYRSFQG 299
Query: 286 YTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D+IVDTLKLR+ L + L E D KV HGA DI WLQ+DF +YV
Sbjct: 300 LTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYV 359
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA K L M R SL +LL H+C V ++K +Q DWR RPLP+ I+YAR DTHY
Sbjct: 360 CNLFDTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHY 419
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL--- 461
LLY+YD M+L L + + +L+L S IC YEK + Y++I H L
Sbjct: 420 LLYIYDLMRLRLVNGSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHI---HGLKEN 476
Query: 462 -LNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
LN Q L LY+WRD IAR +DESTGY+LPN
Sbjct: 477 ELNATQLSVLSSLYRWRDGIARAEDESTGYILPN 510
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPN 601
N Q L LY+WRD IAR +DESTGY+LPN
Sbjct: 479 NATQLSVLSSLYRWRDGIARAEDESTGYILPN 510
>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
Length = 1027
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 165/504 (32%), Positives = 254/504 (50%), Gaps = 76/504 (15%)
Query: 98 LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSA 157
L E D LLES +T +D G P L S + +NA + N E+ + + A
Sbjct: 150 LGELVDHLLESADTCLDEYTGKLAPRKLGSAAE-------ENAASGNAAGEIGTSSRLQA 202
Query: 158 NWFMLNKGAVE-------------IERPQLQFKVKVDNSYEQLFEPKLK-EKPNALKPLA 203
+ N A+ I PQ F K DNS + ++ P LK KPNA L
Sbjct: 203 MTAVQNGKALPKTGNLPSWVLNAPISPPQRHFTRKPDNSADSIWLPHLKYGKPNAKVALG 262
Query: 204 -ILLEKYDAIES----------FC-------HPYEYELDLYVP------KEDFLKCEEPK 239
+ +++A + +C +PY +E+ P K D + + P
Sbjct: 263 HVHPPRFNADGTPIPRGPRRGMYCAEGDPLDNPYHHEIMHADPPSHALSKPDPVAKDNPP 322
Query: 240 QALPLSD-------TPLMMITEPEQVTQLVSELKQQQ--EIAIDLEYHNYRSYQGYTCLM 290
AL D P ++ +Q+ QL L + + EIAIDLE+H+YR+YQG CLM
Sbjct: 323 PALNEKDPWLSTDACPFQWVSTKQQIEQLRDHLDEPRVNEIAIDLEHHSYRTYQGIVCLM 382
Query: 291 QISTRDKDYIVDTLK--LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
Q+STR D+I+DTL +R+ E+LN T+ + VKV HGA+ D+ WLQ+D GLY+V +F
Sbjct: 383 QLSTRWGDWIIDTLSDDVRQHAELLNSSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNLF 442
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT+ A L P L YL+ YC+ D+DK +QL DWR RPLP+ + YAR+DTH LL++
Sbjct: 443 DTYHATNVLMFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLFI 502
Query: 409 YDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN-----EEGYMNIFR---SHA 460
YD ++ +L A G + + F S+ + Y K ++ EG+ ++R A
Sbjct: 503 YDNLRHELMEA--GGIDAIRQVFIRSKQVATATYAKEQWDTDGETREGWRTVWRKWGGEA 560
Query: 461 LLNNQQK----------YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
L + + +R L++WRD +AR++DES Y+L + L+ +A P QG
Sbjct: 561 ALGTEHRKEVSQMKKEERLVRALHRWRDTVAREEDESPRYILGANNLMMLAARAPTTKQG 620
Query: 511 IFACCNPVPQTVKEHVLDIHAIIL 534
+ AC P +K+ + ++ ++I+
Sbjct: 621 VLACIPPNATGLKKRIDELASLIM 644
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
+R L++WRD +AR++DES Y+L + L+ +A P QG+ AC P +K+ + ++
Sbjct: 580 VRALHRWRDTVAREEDESPRYILGANNLMMLAARAPTTKQGVLACIPPNATGLKKRIDEL 639
Query: 637 HAIIL 641
++I+
Sbjct: 640 ASLIM 644
>gi|407850984|gb|EKG05126.1| hypothetical protein TCSYLVIO_003804 [Trypanosoma cruzi]
Length = 713
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 241/462 (52%), Gaps = 41/462 (8%)
Query: 78 KTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWN 137
K + K+ + E Q+ + +A D LLE+++ +D + G
Sbjct: 74 KRRTAFKTGAGTLTEQQRSAVLDAVDSLLENVDGLLDNLKG------------------- 114
Query: 138 KNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPN 197
K A++ ++ + +++ + G V RPQL F+ VDNS EK
Sbjct: 115 KRLNATDQLSLTFGSELQRSSFAVDGGGCVL--RPQLTFEHPVDNSPTPFCPVYYDEKG- 171
Query: 198 ALKPLAILLEKYDAIESFCHPY-EYELDLYVPKEDFLK-CEEPKQALPLSDTPLMMITEP 255
E++ + HP+ E ++ +P+E ++ E P LPL+ PL +
Sbjct: 172 ---------ERHVG-QPGIHPFAELIKNMSMPEEQLIRRVETPY--LPLAQCPLRFVDAT 219
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
+ ++V+ L +++EIA+DLE+H++ SYQG+TCLMQISTR +D ++D LKLR + +L
Sbjct: 220 VDLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCLKLRSLMHLLAP 279
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 375
V + NI+KV HGA DI+WLQKDFGLY+V FDT A + L MP LA+ + H+C V
Sbjct: 280 VFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIALQTLHMP-HGLAFAVDHFCQVK 338
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL--SAAAHGKQNLVLSTFTN 433
DK +Q DWR RP+P + YAR DTH+LLYVYD +K L S NL++
Sbjct: 339 LDKKYQTADWRIRPIPAEMVTYARQDTHFLLYVYDRLKTLLLNSEGRASIGNLLVHVLNE 398
Query: 434 SRNICKLKYEKPVFNEEGYMNIF--RSHALLNNQQKYALRELYKWRDRIARDKDESTGYV 491
SR + YEKP + + I RS L++ Q RE++ WRD IAR+ D+S V
Sbjct: 399 SRRLSLEIYEKPQLDPDASYKIALGRSLGGLSSVQMQVAREIFNWRDAIAREVDDSPPAV 458
Query: 492 LPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
L +L +A +P + CC PV V+ +V + I+
Sbjct: 459 LRLSAVLAIATKLPTSANDVLKCCTPVSMVVRTNVTRLVQIV 500
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
Q RE++ WRD IAR+ D+S VL +L +A +P + CC PV V+ +
Sbjct: 433 QMQVAREIFNWRDAIAREVDDSPPAVLRLSAVLAIATKLPTSANDVLKCCTPVSMVVRTN 492
Query: 633 VLDIHAII 640
V + I+
Sbjct: 493 VTRLVQIV 500
>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 857
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/342 (39%), Positives = 202/342 (59%), Gaps = 20/342 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
I++PQ ++ + V+NS + L+ + L+ F HP E +L +
Sbjct: 164 IKKPQEEYNILVNNSNQPFEHVWLQRSEDGLR--------------FIHPLE-KLSILDF 208
Query: 229 KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ + EP L TP ++ E + + +L ++L+ E A+DLE++ YRS+QG TC
Sbjct: 209 VDKSIGNAEPVSPPSLECTPFKLVKEVKDLKELAAKLRAVNEFAVDLEHNQYRSFQGLTC 268
Query: 289 LMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
LMQISTR +D+I+DTLKLR + L EV D KV HGAD DI WLQ+DFG+YV +
Sbjct: 269 LMQISTRTEDFIIDTLKLRIHVGPYLREVFKDPTKRKVMHGADRDIIWLQRDFGIYVCNL 328
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDT QA + L + R SL +LL+H+C + ++K +Q DWR RPL + ++Y R DTHYLLY
Sbjct: 329 FDTGQASRVLKLERNSLEHLLRHFCGITANKEYQNADWRLRPLTDEMLRYGREDTHYLLY 388
Query: 408 VYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLN 463
+YD M++ L + + +N + + S ++C YEK + E Y++I+ A N
Sbjct: 389 IYDLMRIMLLSMPNETENSNSPLAEVYKRSYDVCMQLYEKELLTESSYLHIYGLQTAGFN 448
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
QQ + L +WRD IAR +DESTG++LPN LL++A+ +P
Sbjct: 449 AQQLAIVAGLCEWRDVIARTEDESTGFILPNKTLLEIAKQMP 490
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ + L +WRD IAR +DESTG++LPN LL++A+ +P
Sbjct: 448 NAQQLAIVAGLCEWRDVIARTEDESTGFILPNKTLLEIAKQMP 490
>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
Length = 628
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 185/302 (61%), Gaps = 16/302 (5%)
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTL-KLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
+H++R+Y G LMQISTR+KD+IVDTL R LEVLNEV D IVKVFHGA D+ W
Sbjct: 36 HHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHRLEVLNEVFADPGIVKVFHGAFMDVVW 95
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+D G+YVVG+FDTH A L SLA+LLK + ++DK +QL DWR RPLP +
Sbjct: 96 LQRDLGVYVVGLFDTHHASTVLGYGGGSLAFLLKKFVGFEADKRWQLADWRIRPLPAEML 155
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAH-----GKQNLVLSTFTNSRNICKLKYEKPVFNEE 450
YAR DTHYLLYVYD ++ DL+AAAH GK + S+ +YE P F+EE
Sbjct: 156 YYARADTHYLLYVYDMIRNDLAAAAHTVHPDGKP--IERVIAKSKKTALSRYENPAFDEE 213
Query: 451 ------GYMNIFRSHALLNNQQKYAL-RELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
G+ N + + N++++A+ R L+ WRD+ AR++DESTG+V+ H++ ++ +
Sbjct: 214 TGLGDRGWYNYLARSSYVYNKEEFAVFRALWNWRDKTAREEDESTGFVMKEHVMAEIVRV 273
Query: 504 IPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQV 563
+P D + +++ + + +K + ++ ++ + R + L V LQ L G Q QV
Sbjct: 274 MPSDKKALWSLLDGHARNLKGRLDELFGVVQEGREKGLAGGVSLLQ-FLSGGSGLAQAQV 332
Query: 564 SP 565
P
Sbjct: 333 VP 334
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 571 NQQKYAL-RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N++++A+ R L+ WRD+ AR++DESTG+V+ H++ ++ + +P D + +++ + + +
Sbjct: 233 NKEEFAVFRALWNWRDKTAREEDESTGFVMKEHVMAEIVRVMPSDKKALWSLLDGHARNL 292
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQV 671
K + ++ ++ + R + L V LQ L G Q Q V
Sbjct: 293 KGRLDELFGVVQEGREKGLAGGVSLLQ-FLSGGSGLAQAQVV 333
>gi|407404412|gb|EKF29876.1| hypothetical protein MOQ_006321 [Trypanosoma cruzi marinkellei]
Length = 713
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/448 (34%), Positives = 235/448 (52%), Gaps = 41/448 (9%)
Query: 92 EGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHD 151
E Q+ + EA D LLE+++ +D + G K A++
Sbjct: 88 EQQRSAVMEAVDSLLENVDGLLDNLKG-------------------KRLNATDQLSLTFG 128
Query: 152 NKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA 211
++ + +++ + G+V RPQL F+ VDNS EK K
Sbjct: 129 SELQQSSFAVDGGGSVL--RPQLTFEHPVDNSPTPFCPVYYDEKG-----------KRHV 175
Query: 212 IESFCHPY-EYELDLYVPKEDFLK-CEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ 269
+ HP+ E ++ +P+E ++ E P LPL+ PL + + ++V+ L +++
Sbjct: 176 GKPGIHPFAELIKNMSMPEEQLIRRVETPY--LPLAQCPLRFVDATVDLEEVVALLLKEK 233
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
EIA+DLE+H++ SYQG+TCLMQISTR +D ++D LKLR + +L V + NI+KV HGA
Sbjct: 234 EIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCLKLRSSMHLLAPVFLNSNILKVLHGA 293
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
DI+WLQKDFGLY+V FDT A + L MP LA+ + H+C V +K +Q DWR RP
Sbjct: 294 REDIRWLQKDFGLYLVNFFDTGIALQTLHMP-HGLAFAVDHFCQVKLNKKYQTADWRIRP 352
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDL--SAAAHGKQNLVLSTFTNSRNICKLKYEKPVF 447
+P + YAR DTH+LLYVYD +K L S NL++ SR + YEKP
Sbjct: 353 IPAEMVAYARQDTHFLLYVYDRLKTLLLNSEGRASIGNLLVHVLNESRRLSLEIYEKPQL 412
Query: 448 NEEGY--MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+ + + + RS L++ Q RE++ WRD AR+ D+S VL +L +A +P
Sbjct: 413 DPDASYKVALGRSLGGLSSMQLQVAREIFNWRDATAREVDDSPPAVLHLSAVLAIATKLP 472
Query: 506 RDIQGIFACCNPVPQTVKEHVLDIHAII 533
+ CC PV V+ +V + I+
Sbjct: 473 TSANDVLKCCTPVSMVVRTNVTRLVQIV 500
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
++ Q RE++ WRD AR+ D+S VL +L +A +P + CC PV V
Sbjct: 430 SSMQLQVAREIFNWRDATAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVV 489
Query: 630 KEHVLDIHAII 640
+ +V + I+
Sbjct: 490 RTNVTRLVQIV 500
>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
Brener]
gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
Length = 768
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 235/456 (51%), Gaps = 41/456 (8%)
Query: 84 KSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKAS 143
K+ + E Q+ + EA D LLE+++ +D + G + + V E + +
Sbjct: 135 KTGAGTLTEQQRSAVLEAVDSLLENVDGLLDNLKGKRLNATDQLSLTFVSELQHSS---- 190
Query: 144 NVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA 203
F ++ G + RPQL F+ VDNS EK
Sbjct: 191 ----------------FAVDGGGC-VLRPQLTFEHPVDNSPTPFCPVYYDEKG------- 226
Query: 204 ILLEKYDAIESFCHPY-EYELDLYVPKEDFLK-CEEPKQALPLSDTPLMMITEPEQVTQL 261
E++ + HP+ E ++ +P+E ++ E P LPL+ PL + + +
Sbjct: 227 ---ERHVG-QPGIHPFAELIKNMSMPEEQLIRRVETPY--LPLAQCPLRFVDATVDLEDV 280
Query: 262 VSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKN 321
V+ L +++EIA+DLE+H++ SYQG+TCLMQISTR +D ++D LKLR + +L V + N
Sbjct: 281 VALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCLKLRSSMHLLAPVFLNPN 340
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 381
I+KV HGA DI+WLQKDFGLY+V FDT A + L MP LA+ + H+C V DK +Q
Sbjct: 341 ILKVLHGAREDIRWLQKDFGLYLVNFFDTGIALQTLHMP-HGLAFAVDHFCQVKLDKKYQ 399
Query: 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL--SAAAHGKQNLVLSTFTNSRNICK 439
DWR RP+P YAR DTH+LLYVYD +K L S NL++ SR +
Sbjct: 400 TADWRIRPIPAEMATYARQDTHFLLYVYDRLKTLLLNSEGRASIGNLLVHVLNESRRLSL 459
Query: 440 LKYEKPVFNEEGYMNIF--RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHML 497
YEKP + + I RS L++ Q RE++ WRD IAR+ D+S VL +
Sbjct: 460 EIYEKPQLDPDASYKIALGRSLGGLSSMQMKVAREIFNWRDAIAREVDDSPPAVLHLSAV 519
Query: 498 LQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
L +A +P + CC PV V+ +V + I+
Sbjct: 520 LAIATKLPTSANDVLKCCTPVSMVVRTNVTRLVQIV 555
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 569 SNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 628
S+ Q K A RE++ WRD IAR+ D+S VL +L +A +P + CC PV
Sbjct: 485 SSMQMKVA-REIFNWRDAIAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMV 543
Query: 629 VKEHVLDIHAII 640
V+ +V + I+
Sbjct: 544 VRTNVTRLVQIV 555
>gi|154336623|ref|XP_001564547.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 735
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 175/529 (33%), Positives = 265/529 (50%), Gaps = 45/529 (8%)
Query: 18 LSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL- 76
L T DV V + S+ + +K + P + +A P + + S+ ++ L+D+
Sbjct: 10 LPSTKDV-VSAVFGSVKEYSKLSAQLP-LDDYEYHLAFPGFRKHIRDDSETLVALMDACT 67
Query: 77 ----------LKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLP 126
L ++ +S + +E Q+ + EA D LLE++++ +D + G K L
Sbjct: 68 QLLPKRRRTSLCSEEDPRSGAVHLVEAQRTAVMEAIDSLLENVDSLLDEVKGRK----LD 123
Query: 127 SQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAV----EIERPQLQFKVKVDN 182
+Q ++ S + H N +G + I RPQL F DN
Sbjct: 124 AQEQL------SVTFGSELMALQHRNGVAGPAEASSGRGGLVSLAHIRRPQLLFDTPPDN 177
Query: 183 SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQAL 242
S F P + +Y + HP+E + +V E L E +
Sbjct: 178 SVAP-FVPHYCDASG----------QYHLGVAGQHPFEGVIRAFVIPESQLLPREEVPPM 226
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
PL PL + P + +V++L EIA+DLE+H++ SYQG TCLMQISTR++D+IVD
Sbjct: 227 PLDTCPLSFVDTPAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGITCLMQISTREEDFIVD 286
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
L+LR + L V + I+KV HGA DI+WLQKDF LY+V FDT A + L MP
Sbjct: 287 CLQLRSLMGTLAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDTGVALQTLHMP-Y 345
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
SLA+ + H+C V +K FQ DWR RPL + YAR DTH+LLYVYD +K L + G
Sbjct: 346 SLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKA-LLLNSEG 404
Query: 423 KQ---NLVLSTFTNSRNICKLKYEKP-VFNEEGY-MNIFRSHALLNNQQKYALRELYKWR 477
+ NL++ + S+ + YEKP V EE Y + + RS + LN Q+ R+++ WR
Sbjct: 405 RAIVGNLLVHVYKESKQLSLQLYEKPHVVPEETYKIALGRSLSGLNKVQEKVARDVFNWR 464
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
D AR+ D+S VL +L +A +P + + CC P V+++V
Sbjct: 465 DSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDNV 513
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC P V
Sbjct: 450 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVV 509
Query: 630 KEHV 633
+++V
Sbjct: 510 RDNV 513
>gi|449310638|gb|AGE92546.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 175/529 (33%), Positives = 265/529 (50%), Gaps = 45/529 (8%)
Query: 18 LSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL- 76
L T DV V + S+ + +K + P + +A P + + S+ ++ L+D+
Sbjct: 10 LPSTKDV-VSAVFGSVKEYSKLSAQLP-LDDYEYHLAFPGFRKHIRDDSETLVALMDACT 67
Query: 77 ----------LKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLP 126
L ++ +S + +E Q+ + EA D LLE++++ +D + G K L
Sbjct: 68 QLLPKRRRTCLCSEEDPRSGAVHLVEAQRTAVMEAIDSLLENVDSLLDEVKGRK----LD 123
Query: 127 SQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAV----EIERPQLQFKVKVDN 182
+Q ++ S + H N +G + I RPQL F DN
Sbjct: 124 AQEQL------SVTFGSELMALQHRNGVAGPAEASSGRGGLVSLAHIRRPQLLFDTPPDN 177
Query: 183 SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQAL 242
S F P + +Y + HP+E + +V E L E +
Sbjct: 178 SVAP-FVPHYCDASG----------QYHLGVAGQHPFEGVIRAFVIPESQLLPREEVPPM 226
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
PL PL + P + +V++L EIA+DLE+H++ SYQG TCLMQISTR++D+IVD
Sbjct: 227 PLDTCPLSFVDTPAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGITCLMQISTREEDFIVD 286
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
L+LR + L V + I+KV HGA DI+WLQKDF LY+V FDT A + L MP
Sbjct: 287 CLQLRSLMGTLAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDTGVALQTLHMP-Y 345
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
SLA+ + H+C V +K FQ DWR RPL + YAR DTH+LLYVYD +K L + G
Sbjct: 346 SLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKA-LLLNSEG 404
Query: 423 KQ---NLVLSTFTNSRNICKLKYEKP-VFNEEGY-MNIFRSHALLNNQQKYALRELYKWR 477
+ NL++ + S+ + YEKP V EE Y + + RS + LN Q+ R+++ WR
Sbjct: 405 RAIVGNLLVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLNKVQEKVARDVFNWR 464
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
D AR+ D+S VL +L +A +P + + CC P V+++V
Sbjct: 465 DSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDNV 513
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC P V
Sbjct: 450 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVV 509
Query: 630 KEHV 633
+++V
Sbjct: 510 RDNV 513
>gi|392579689|gb|EIW72816.1| hypothetical protein TREMEDRAFT_70822 [Tremella mesenterica DSM
1558]
Length = 955
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 173/553 (31%), Positives = 271/553 (49%), Gaps = 87/553 (15%)
Query: 56 PNYISGVAGTSDKVMTLVDSLL----KTQNISKSMSKLYLEGQKDILTEAN-------DK 104
P++ + S +V+ + + LL TQ + LE ++D+ E D
Sbjct: 80 PSFGKAMDAGSLQVLEMAEKLLGVISATQGGKGKSKRNTLENEEDVTDEYRRAVGGVVDG 139
Query: 105 LLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNK 164
LLE + ++D + G K + V E+ + + + ++++K + +
Sbjct: 140 LLEDADEQLDELRGEKKAVAI-----QVTEAPPQGSSS--------NSQRKRPGYLPAHI 186
Query: 165 GAVEIERPQLQFKVKVDNSYE-QLFEPKLKEKPNALKPLAIL------------------ 205
+I +PQLQF +DN+ ++ L K +++ PL+ +
Sbjct: 187 RDAQIPKPQLQFDPPIDNNNSPSPWQHSLSTKLHSIVPLSYIPPLNIDYTPEEELDPTLA 246
Query: 206 -LEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSE 264
L K I+ HPY +E V + EP P+++TP I PEQ+ ++V+
Sbjct: 247 ELRKAREIKLRTHPYYHETRNLVYPQSLFNRSEPIIPKPMNETPYSFIDTPEQLEEMVTH 306
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL--EVLNEVLTDKNI 322
LK EIA+DLEYH+ S+ G+TCL+QISTR++DYIVD +KLR +L + L V+ D +I
Sbjct: 307 LKSVTEIAVDLEYHSTHSFAGFTCLIQISTRERDYIVDAIKLRSELRRDKLGGVMVDPSI 366
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 382
VKVFHG+ SDI WLQ+DF ++VVG+FDT A L P SLA LLK YC+ D+DK +QL
Sbjct: 367 VKVFHGSQSDIPWLQQDFSIFVVGLFDTFHATLVLNFPAHSLASLLKLYCNFDADKRYQL 426
Query: 383 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LDLSAA-------------------- 419
DWR RPLPE YAR DTH+LLY+YD ++ LD S +
Sbjct: 427 ADWRIRPLPEEMEMYARADTHFLLYIYDKLRNALLDKSVSLLPTPVGDKESKTSDTAENG 486
Query: 420 ----AHGKQNLVLSTFTNSRNICKLKYEKPVFNEE-----GYMNIFRSHALLNNQQKYA- 469
H + + T S + Y+ ++E+ G S L +++ A
Sbjct: 487 TVEEGHLAHSAMKETLERSAQTSLIMYQPNYYDEKTGRGSGGWREACSRWLPSSKDTEAG 546
Query: 470 --LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD---IQGIFACCNPVPQTVKE 524
+ L+ WRD +AR++DES +VLPN L+ +++ P +Q I +P+
Sbjct: 547 AVFKALHSWRDSLARNEDESPVWVLPNDKLVALSKQRPSTLFVVQKIIGNYSPL---ALR 603
Query: 525 HVLDIHAIILKAR 537
H DI ++I +
Sbjct: 604 HAADILSVIASTK 616
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 566 PHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD---IQGIFACC 622
P + + + L+ WRD +AR++DES +VLPN L+ +++ P +Q I
Sbjct: 538 PSSKDTEAGAVFKALHSWRDSLARNEDESPVWVLPNDKLVALSKQRPSTLFVVQKIIGNY 597
Query: 623 NPVPQTVKEHVLDIHAIILKAR 644
+P+ H DI ++I +
Sbjct: 598 SPL---ALRHAADILSVIASTK 616
>gi|357120688|ref|XP_003562057.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 690
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 212/370 (57%), Gaps = 28/370 (7%)
Query: 169 IERPQLQFKVKVDNS---YEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ + ++V+N ++ ++ ++ + PL L P E +D
Sbjct: 86 IPRPQDVYLIRVNNCNLPFDHVWLEPSEDGTRRIHPLEKL------------PLEQLIDR 133
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP+ EP + + D+P ++ + + + +LV +LK E A+DLE++ YRS+QG
Sbjct: 134 NVPEI------EPVRPADVEDSPFTLVEDLKGLMELVDKLKDVNEFAVDLEHNQYRSFQG 187
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D+IVDTLKLR L L + D KV HGAD DI WLQ+DF +YV
Sbjct: 188 LTCLMQISTRTEDFIVDTLKLRIYLGPYLQKHFKDPTKRKVMHGADRDIIWLQRDFRIYV 247
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT QA + L M R SL +LL H+C V ++K +Q DWR RPL + I+YAR DTHY
Sbjct: 248 CNLFDTGQASRVLQMERNSLEHLLHHFCGVTANKVYQNADWRSRPLSDEMIKYAREDTHY 307
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF--RSHALL 462
LLY+YD M+L L + + +L+L S IC YEK + + Y++I+ + H L
Sbjct: 308 LLYIYDLMRLRLQKESTCENDLLLEVQNRSNEICLQLYEKELLTDTSYLHIYGLQEHE-L 366
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVP 519
Q + L++WRD AR +DESTGYVLPN L+++A+ +P ++Q I P
Sbjct: 367 EAAQLAVVSALHQWRDYTARQEDESTGYVLPNKALIEIAKKMPTSTAELQRIVKSKYPFV 426
Query: 520 QTVKEHVLDI 529
+ + +LDI
Sbjct: 427 EANFDVILDI 436
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCN 623
H+ Q + L++WRD AR +DESTGYVLPN L+++A+ +P ++Q I
Sbjct: 364 HELEAAQLAVVSALHQWRDYTARQEDESTGYVLPNKALIEIAKKMPTSTAELQRIVKSKY 423
Query: 624 PVPQTVKEHVLDI 636
P + + +LDI
Sbjct: 424 PFVEANFDVILDI 436
>gi|424513045|emb|CCO66629.1| exosome component 10 [Bathycoccus prasinos]
Length = 911
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 218/397 (54%), Gaps = 46/397 (11%)
Query: 154 KKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQ-----LFEPKLKEKPN--ALK----PL 202
KK+ + + G I RPQ FK VDN E L P+ K K + ALK PL
Sbjct: 124 KKNISNAAFHGGGSSISRPQEAFKDVVDNRTETDMNFVLPPPRGKGKASTSALKESKHPL 183
Query: 203 A-ILLE--KYDAIESFCHP-YEYELDLYVPKEDFLKCEEPKQALPLSD-TPLMMITEPEQ 257
A +LL+ KY++IE + + D + L+C +P P ++ P +
Sbjct: 184 ASVLLDSFKYNSIEDYVDKNHNSAGDRTTAQLWELRCSDPILPTPTNEENPATFVDNENG 243
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE-VLNEV 316
+ +L L + A+DLE+H+YR+Y+G+TCL+QISTR++D++VD L+LR + L
Sbjct: 244 LEELEGVLSKAPIFAVDLEHHSYRTYRGFTCLIQISTREQDFVVDALRLRHLIGPALGRH 303
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
++ +KVFHGA+SD+ WLQ+DFG+YVV MFDT QA + L +P LAYLLK YC + +
Sbjct: 304 FENEEKLKVFHGANSDMIWLQRDFGIYVVNMFDTGQAARILELPSFGLAYLLKQYCGIKA 363
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN 436
+K +QL DWR RPL I YAR+DTH LLYV+D +K +L A G + S F SR+
Sbjct: 364 EKKYQLADWRLRPLSREMINYARSDTHSLLYVHDRLKQELY--AKGGVECIQSVFLKSRD 421
Query: 437 ICKLKYEKPVFNEEGY-------------------MNIFRS--HALLNNQ------QKYA 469
+C L YE V + Y + RS A L+ + + A
Sbjct: 422 VCLLTYEPQVITDLSYHEDLMKSANASSGGGSGHGNTLSRSAQQAQLSQEILKSPVAQAA 481
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
+ L+KWRD AR DES G+V+P H++L++A P+
Sbjct: 482 MEALFKWRDDCARANDESLGFVMPRHLMLRLASEQPK 518
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 556 KKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 613
+ QQ Q+S + + A+ L+KWRD AR DES G+V+P H++L++A P+
Sbjct: 461 RSAQQAQLSQEILKSPVAQAAMEALFKWRDDCARANDESLGFVMPRHLMLRLASEQPK 518
>gi|353243741|emb|CCA75245.1| related to nucleolar 100K polymyositis-scleroderma protein
[Piriformospora indica DSM 11827]
Length = 847
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 224/413 (54%), Gaps = 41/413 (9%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYEL-DLYVPK 229
+PQ +F V+NS + ++ L++K +A + S HPY E+ L P
Sbjct: 166 KPQTRFIEPVNNSNDLVWRHTLQQKWHAAQ------IGSSRPPSSAHPYFKEITSLSHPP 219
Query: 230 EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCL 289
FL P DTP + + L+ +LKQ +EIAIDLEYH+YRSY G+ CL
Sbjct: 220 SMFL-SRPPIPPKSFDDTPFTFVESLNGLHSLLDQLKQSEEIAIDLEYHSYRSYYGFVCL 278
Query: 290 MQISTRDKDYIVDTL--KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
MQ+S R +D++VD L ++R +LE+LNEV TD NIVKV HGA+SDI WLQ++F LY+V +
Sbjct: 279 MQVSNRQQDWVVDCLVPEIRANLEILNEVFTDPNIVKVLHGAESDIVWLQENFHLYIVNL 338
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDT A + L +PR SLA+LL YCD +DK +QL DWR RPLP + YAR+DTH+LL+
Sbjct: 339 FDTFHASRALELPRHSLAFLLSAYCDFTADKRYQLADWRIRPLPAEMLHYARSDTHFLLF 398
Query: 408 VYDCMKLDLSAAA--------------------HGKQNLVLSTFTNSRNICKLKYEK-PV 446
+YD ++ L + ++ L S T+ R + +Y+
Sbjct: 399 IYDQLREALLEKGKNPSTPPAEDAPPLSDPQLRYIRRVLSNSAQTSLREFVRERYDAVEG 458
Query: 447 FNEEGYMNIF----RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ-MA 501
G+ + R L+ ++ ++ WRDR+AR++DES +V+ N +LL M
Sbjct: 459 TGMRGWAGLLKKWNRRSLLVPGVERNIFLAVHAWRDRVAREEDESPVFVISNQLLLSLME 518
Query: 502 QSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE--KLQPSL 552
+ +P ++ +FA P +V + A +LK + P++ K++P L
Sbjct: 519 KPVPVNLTALFAS---FPGSVPSLIRKRGAELLKVMQDAAVAPIDAAKMEPML 568
Score = 47.4 bits (111), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQ-MAQSIPRDIQGIFACC-NPVPQTVKEHVLDIH 637
++ WRDR+AR++DES +V+ N +LL M + +P ++ +FA VP +++ ++
Sbjct: 489 VHAWRDRVAREEDESPVFVISNQLLLSLMEKPVPVNLTALFASFPGSVPSLIRKRGAELL 548
Query: 638 AIILKARLQPLTKPVEKLQPSL 659
++ A + P+ K++P L
Sbjct: 549 KVMQDAAVAPID--AAKMEPML 568
>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1278
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 169/598 (28%), Positives = 284/598 (47%), Gaps = 118/598 (19%)
Query: 25 LVQNAYKSIVKCTKTAQSFPST--HENSLLIAS-PNYISGVAGTSDKVMTLVDSLLK--T 79
V+ ++S++ T+ + + P E+ A+ P + S G +V+ ++ L +
Sbjct: 31 FVRQLFESLLLGTRASNAIPDGEGQEDYAYNATFPEFRSRAEGCGKQVLEVIQIFLNHVS 90
Query: 80 QNISKSMSKLYLEGQKDI---LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESW 136
Q + ++ G ++ + + + LLE +++ +D AG Q +++
Sbjct: 91 QEGELGLPEVGDAGDPEVFQGIADVVETLLEDVDSYLDEAAGKGANQ----QVALMRHQL 146
Query: 137 NKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKP 196
A A+ + A + + V++ +PQ F+ ++DNS + F PKL+EKP
Sbjct: 147 KTVASAA---------RSGPAKYASMVSNVVDMPKPQEAFQEEIDNSRDTPFVPKLREKP 197
Query: 197 NALKP------------LAILLEKY--DAIES-------FCHPYEYELDL--YVPKEDFL 233
NA+ P + + LE D++ + HPYE E+ Y+P +
Sbjct: 198 NAVTPLDLAPISTLSTSMGMELEGRAEDSMSGSGLLDFHYPHPYEVEIRAFHYMPAQ--- 254
Query: 234 KCEEPKQALPLSDTPLM-----------MITEPEQVTQLVSEL----------------- 265
+ P + + PL+ + E + ++S++
Sbjct: 255 -VKAPLDSQLVRPVPLVGDEGHKAPAATFVDTVEALDSMISDILGDGAPGGGGGGGGGGG 313
Query: 266 -----------------KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +EIA+DLE+H++R++ G CLMQ+STR++DYIVD LKLR
Sbjct: 314 GSSSGSDDEGGGGGPAREACREIAVDLEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRG 373
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
++ L V +D NIVKVFHG+DSD+ WLQ+D GLY+V MFDT QA + L +P LA+LL
Sbjct: 374 EMGRLLPVFSDPNIVKVFHGSDSDVLWLQRDLGLYLVNMFDTGQAARQLGLPSFGLAHLL 433
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ +CD DK QL DWR RPLP D + +DL + G V
Sbjct: 434 EKFCDFVPDKKHQLSDWRMRPLPA-----------------DMLLIDLERS--GGDVAVK 474
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL------LNNQQKYALRELYKWRDRIAR 482
+ SR IC ++EKP F E+G+ + + + + L L+ WRD IAR
Sbjct: 475 AVLDASREICLRRFEKPAFQEKGWSEVLKRQGGNGVLDDFGDVPRRVLSALWSWRDMIAR 534
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
+DES GYV+ ++++++A+ P + C NP+P+ V++H DI I+ A+ +S
Sbjct: 535 AEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLPRLVQQHAEDILEIVENAKDES 592
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 627
D + + L L+ WRD IAR +DES GYV+ ++++++A+ P + C NP+P+
Sbjct: 513 DFGDVPRRVLSALWSWRDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLPR 572
Query: 628 TVKEHVLDIHAIILKAR 644
V++H DI I+ A+
Sbjct: 573 LVQQHAEDILEIVENAK 589
>gi|356514085|ref|XP_003525737.1| PREDICTED: LOW QUALITY PROTEIN: exosome component 10-like [Glycine
max]
Length = 429
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 192/312 (61%), Gaps = 13/312 (4%)
Query: 238 PKQALPLSDTPLMMITEPEQVTQL----VSELKQQQEIAIDLEYHNYRSYQGYTCLMQIS 293
P + P+ TP ++ E V L +S L E A+DLE++ YR++QG TCLMQIS
Sbjct: 62 PAKPPPIESTPFKLV---ETVQDLKAPPLSMLHSADEFAVDLEHNQYRTFQGLTCLMQIS 118
Query: 294 TRDKDYIVDTLKLREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQ 352
TR +D+IVDTLKL + L EV D + KV HGAD+D+ WLQ+DFG+Y+ +FDTHQ
Sbjct: 119 TRTEDFIVDTLKLHSSIGPYLREVFKDLSNRKVMHGADNDVMWLQRDFGIYICNLFDTHQ 178
Query: 353 ACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412
A K L + R+SL YLL H+CD+ ++K +Q DWR RPLP ++YAR DTHYLLY+YD M
Sbjct: 179 ASKVLKLERRSLKYLLCHFCDITANKEYQSADWRLRPLPYEMVRYAREDTHYLLYIYDLM 238
Query: 413 KLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGYMNIF-RSHALLNNQQKY 468
+++L + + +++ ++ + S +C YEK + E+ ++ I+ A QQ
Sbjct: 239 RIELFSMLNEPESVDAPLVEVYKCSYKVCMRLYEKXLLTEKSFLRIYGLQGAGFTAQQLV 298
Query: 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 528
+ L+KWRD +AR KD+STGYVLPN +L++A+ +P + N V EH LD
Sbjct: 299 IVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYV-EHNLD 357
Query: 529 IHAIILKARLQS 540
I++ +Q+
Sbjct: 358 SLVDIIRHSIQN 369
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ + L+KWRD +AR KD+STGYVLPN +L++A+ +P + N V E
Sbjct: 295 QQLVIVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYV-E 353
Query: 632 HVLDIHAIILKARLQ 646
H LD I++ +Q
Sbjct: 354 HNLDSLVDIIRHSIQ 368
>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/388 (38%), Positives = 218/388 (56%), Gaps = 49/388 (12%)
Query: 56 PNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDV 115
P + S +DK+M +V L + L + + +L EAND++LE + ++D
Sbjct: 52 PAFTSFQRRVNDKIMKIVTDLNALHGRATKREPLPDDLVESML-EANDQILEGVGNKLDE 110
Query: 116 MAGTKTPS--VLP------SQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAV 167
+G + ++P ++ KI+ SWN+ + ++ + D K K A
Sbjct: 111 ASGINKDAGPIMPDGQITNAKEKIIAASWNRRSTST-----IQDKSKM--------KCAE 157
Query: 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL-------------------AILLEK 208
I +PQL F+ K DN+ F P+L EKP+A KPL IL E
Sbjct: 158 TISKPQLLFREKPDNTIIP-FVPRLFEKPHAKKPLPEQLVKINSDRHKTGKPLSMILKEL 216
Query: 209 YDAIES--FCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSEL 265
I++ + HPYE E+ VP + + L DTPL ++ ++ EL
Sbjct: 217 GSQIDTSIYSHPYEEEIKSCGVPS----ASDNVTEYKALDDTPLSVVESSLSFNLMMQEL 272
Query: 266 KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 325
+++ E+A+DLE+H YRSYQG+TCL+QIS+R KDYI+D L + ED+ LNEV + IVK+
Sbjct: 273 REESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYKLNEVFANPKIVKI 332
Query: 326 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDW 385
FHG+ +D+ WLQ+DFG+YVV +FDT A K L + ++SL YLL+HYC + DK FQL DW
Sbjct: 333 FHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADW 392
Query: 386 RHRPLPEPAIQYARTDTHYLLYVYDCMK 413
R RP+P ++YAR DTHYLLYVYD ++
Sbjct: 393 RMRPIPPNMLRYARQDTHYLLYVYDRLR 420
>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
Length = 1092
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 177/315 (56%), Gaps = 23/315 (7%)
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
DTP I + L +E+A+DLE H+YRS+QG+ CLMQ+STR +D ++DTL
Sbjct: 245 DTPFTFIDTVPALRAAAQRLAAARELAVDLEAHSYRSFQGFCCLMQLSTRSEDLVIDTLA 304
Query: 306 LREDLE-VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
LR + L + D +VKV HGADSD+ WLQ+DFGL++ +FDT QA + L M L
Sbjct: 305 LRAHVGPALAPIFADPGVVKVLHGADSDVAWLQRDFGLFLANLFDTGQAARVLGMRGHGL 364
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG-K 423
A+LL YC +DK FQL DWR RPL + YAR+DTH+LLY YD +K L+ A
Sbjct: 365 AHLLDFYCGFKADKRFQLADWRVRPLTPEMLHYARSDTHHLLYCYDKLKAALAEAGDSVP 424
Query: 424 QNLVL--------------------STFTNSRNICKLKYEKPVFNEEGYMNIF-RSHALL 462
++L + + SR +C L+Y+K ++ ++++ + +A L
Sbjct: 425 EHLAVELPPAASTAAAAAGAGAALATVLERSRRLCLLQYDKERYSPLAFLDLASKLNASL 484
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
++Q LY+WRD +AR DESTGY+LP LL++AQ++PR + + +
Sbjct: 485 TDEQLSVFGALYEWRDSVARQLDESTGYLLPRAQLLKLAQAMPRTVLELHKALGRSSPVI 544
Query: 523 KEHVLDIHAIILKAR 537
V ++ A I AR
Sbjct: 545 SRQVAEVLAAIQAAR 559
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
++Q LY+WRD +AR DESTGY+LP LL++AQ++PR + + +
Sbjct: 485 TDEQLSVFGALYEWRDSVARQLDESTGYLLPRAQLLKLAQAMPRTVLELHKALGRSSPVI 544
Query: 630 KEHVLDIHAIILKAR 644
V ++ A I AR
Sbjct: 545 SRQVAEVLAAIQAAR 559
>gi|452835556|gb|AGG14045.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 170/529 (32%), Positives = 257/529 (48%), Gaps = 45/529 (8%)
Query: 18 LSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL- 76
L T DV V + S+ + +K + P + +A P + + S+ ++ L+D+
Sbjct: 10 LPSTKDV-VSAVFGSVKEYSKLSAQLP-LDDYEYHLAFPGFRKHIRDDSETLVALMDACT 67
Query: 77 ----------LKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLP 126
L ++ +S + +E Q+ + EA D LLE++++ +D + G K L
Sbjct: 68 QLLPKRRRTSLCSEEDPRSGAVHLVEAQRTAVMEAIDSLLENVDSLLDEVKGRK----LD 123
Query: 127 SQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAV----EIERPQLQFKVKVDN 182
+Q ++ S + H N +G + I RPQL F
Sbjct: 124 AQEQL------SVTFGSELMALQHRNGVAGPAEASSGRGGLVSLAHIRRPQLLFDT---- 173
Query: 183 SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQAL 242
P HP+E + +V E L E +
Sbjct: 174 -------PPXXXXXXXXXXXXXXXXXXXXXXXXQHPFEGVIRAFVIPESQLLPREEVPPM 226
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
PL PL + P + +V++L EIA+DLE+H++ SYQG TCLMQISTR++D+IVD
Sbjct: 227 PLDTCPLSFVDTPAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGITCLMQISTREEDFIVD 286
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
L+LR + L V + I+KV HGA DI+WLQKDF LY+V FDT A + L MP
Sbjct: 287 CLQLRSLMGTLAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDTGVALQTLHMP-Y 345
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
SLA+ + H+C V +K FQ DWR RPL + YAR DTH+LLYVYD +K L + G
Sbjct: 346 SLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKA-LLLNSEG 404
Query: 423 KQ---NLVLSTFTNSRNICKLKYEKP-VFNEEGY-MNIFRSHALLNNQQKYALRELYKWR 477
+ NL++ + S+ + YEKP V EE Y + + RS + LN Q+ R+++ WR
Sbjct: 405 RAIVGNLLVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLNKVQEKVARDVFNWR 464
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
D AR+ D+S VL +L +A +P + + CC P V+++V
Sbjct: 465 DSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDNV 513
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N Q+ R+++ WRD AR+ D+S VL +L +A +P + + CC P V
Sbjct: 450 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVV 509
Query: 630 KEHV 633
+++V
Sbjct: 510 RDNV 513
>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
Length = 434
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 233/431 (54%), Gaps = 31/431 (7%)
Query: 27 QNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSM 86
Q S+V+ T+T + + +S + S ++++L SLLK +
Sbjct: 12 QQLTSSLVQMTRTVGQLSAEDLSFHRTSSAELSESIDEQSGRILSLTSSLLKAATAGTDL 71
Query: 87 SKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNA 140
L+ + I + + D LLE + +D G + PSQ + A
Sbjct: 72 PVPTLQDEDSIEDNWRGVVDVIDALLERADACLDEFTGV-IKRLSPSQQE------QSAA 124
Query: 141 KASNVWQEVHDNKKKSANWF--MLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNA 198
KA+ KK+ + F + + G +I +PQL F+ +VDN+ + F+P L+ KP+A
Sbjct: 125 KAT----------KKTTSKFPTIYDYGPSKIPKPQLYFERQVDNADDSPFKPLLRTKPHA 174
Query: 199 LKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQV 258
+ PL +E D +PYE E+ E P P T + E V
Sbjct: 175 VVPLEKSVESSDR-----NPYETEIRAARYPESTYAVSSPVPYQPWESTTATFVDTLEGV 229
Query: 259 TQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVL 317
+++ ELK +EIAIDLE+H+ SYQG LMQISTRDKD++VDTLK RE+L++LNEV
Sbjct: 230 KEMLEELKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVF 289
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD 377
D +I+KVFHG+ DI WLQ+D GLYVVGMFDT+ A L P++SL +LL+ + + ++D
Sbjct: 290 ADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRSLKFLLQKFVNFEAD 349
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNI 437
K +Q+ DWR RP+PE YAR+DTHYLL+++D ++ +L + + NL+ S++
Sbjct: 350 KRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIENSTPENNLIDYVLEKSKDE 409
Query: 438 CKLKYEKPVFN 448
++E+ ++
Sbjct: 410 ALQRFERSPYD 420
>gi|343427876|emb|CBQ71402.1| related to RRP6-Exonuclease component of the nuclear exosome
[Sporisorium reilianum SRZ2]
Length = 921
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 242/494 (48%), Gaps = 65/494 (13%)
Query: 98 LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKK--K 155
L E D LLES +T +D G P + + + + V + K K
Sbjct: 141 LGELVDHLLESADTCLDEYTGKLAPRKVGASGDDAAAA--GTGSRTQAMAAVQNGKALPK 198
Query: 156 SANW--FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK-EKPNALKPLAIL------- 205
+ N ++LN I PQ F K DNS ++P+L KPNA L +
Sbjct: 199 TGNLPSWVLN---APIPPPQKHFTTKPDNSASTQWQPRLTYGKPNAQVALGHVNPPRVGA 255
Query: 206 ----LEKYDAIESFC-------HPYEYELDLYVP------KEDFLKCEEPKQALPLSD-- 246
L + +C +PY +E+ P K D + P L D
Sbjct: 256 DGQPLPRGPRRGMYCAEGDPLDNPYYHEIVHASPPTHALTKPDATAKDTPPPPLNEKDPS 315
Query: 247 -----TPLMMITEPEQVTQLVSELKQQQ--EIAIDLEYHNYRSYQGYTCLMQISTRDKDY 299
P I+ Q+ QL L + + EIAIDLE+H+YR+YQG CLMQ+STR D+
Sbjct: 316 LSTDACPFQWISTKAQLEQLRDHLDEPRVTEIAIDLEHHSYRTYQGIVCLMQLSTRWGDW 375
Query: 300 IVDTL--KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL 357
IVDTL ++RE +LN T VKV HGA+ D+ WLQ+D GLY+V +FDT+ A L
Sbjct: 376 IVDTLADEVREHAALLNTSFTHPEKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHATNVL 435
Query: 358 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417
P L YL+ YC D+DK +QL DWR RPLP+ + YAR+DTH LLY+YD ++ +L
Sbjct: 436 LFPSHGLNYLMARYCRFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIYDNLRWELM 495
Query: 418 AAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE-----EGYMNIFR---SHALLNNQQKYA 469
A G + F S+++ Y K ++ EG+ +++R A L +++
Sbjct: 496 EA--GGVAAIRDVFERSKDVAMATYAKEEWDSDGESREGWRSVWRKWGGEAALGTEERKD 553
Query: 470 LRE----------LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
+R+ L++WRD +AR++DES YVL L+ +A P +G+ AC P
Sbjct: 554 VRDMKREERLVRVLHRWRDGVAREEDESPRYVLGASHLMMLATRAPTGREGVLACIPPNA 613
Query: 520 QTVKEHVLDIHAII 533
+K+ V +I A+I
Sbjct: 614 TGLKKRVDEIGALI 627
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 636
+R L++WRD +AR++DES YVL L+ +A P +G+ AC P +K+ V +I
Sbjct: 564 VRVLHRWRDGVAREEDESPRYVLGASHLMMLATRAPTGREGVLACIPPNATGLKKRVDEI 623
Query: 637 HAII 640
A+I
Sbjct: 624 GALI 627
>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
truncatula]
Length = 341
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 163/241 (67%), Gaps = 7/241 (2%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGA 329
+ +DLE++ YRS+QG TCLMQISTR +D+IVDTLKLR+ + + L +V D KV HGA
Sbjct: 14 LLVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGA 73
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D DI WLQ+DFG+Y+ MFDT QA + L M R SL +LL+H+C V ++K +Q DWR RP
Sbjct: 74 DRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARP 133
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKL---DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPV 446
LP+ I+Y R DTHYLLY+YD M++ +LS + + +L + S N+C YEK +
Sbjct: 134 LPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDL 193
Query: 447 FNEEGYMNI--FRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
E ++NI R A N QQ + LY+WRD +AR +DESTGY+LPN ++L +A+ +
Sbjct: 194 LTENSFLNIKGLRG-AGFNGQQLAVVSGLYEWRDVLARAEDESTGYILPNKVILLIAKHM 252
Query: 505 P 505
P
Sbjct: 253 P 253
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N QQ + LY+WRD +AR +DESTGY+LPN ++L +A+ +P
Sbjct: 211 NGQQLAVVSGLYEWRDVLARAEDESTGYILPNKVILLIAKHMP 253
>gi|406699611|gb|EKD02812.1| hypothetical protein A1Q2_02887 [Trichosporon asahii var. asahii
CBS 8904]
Length = 906
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 223/447 (49%), Gaps = 46/447 (10%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSL-LIASPNYISGVAGTSDKVMTLVDSLL 77
S F V N K++ T A FP + + + G+ T +V+ L D LL
Sbjct: 44 STDFAGFVDNMTKALEASTSAAAGFPDKSDLAFHRTLDRKFAKGLDATGQRVLDLTDRLL 103
Query: 78 KTQNISKSMSKLYLEGQK-----------DILTEANDKLLESINTRIDVMAGTKTPSVLP 126
+ + S K G K D++ ++E I+ ++ G+ ++L
Sbjct: 104 QLA-VEGSQEKTKAAGGKVKPRRKVTDEDDVVDSFQATVIEPIDALLEDAVGSGCRTLLT 162
Query: 127 SQPKIVKESWNKNAKAS---------NVWQEVHDNKKKSANWFMLNK--GAVEIERPQLQ 175
+ + E K KA+ Q++ +++ + A I +PQL
Sbjct: 163 LKDSNLDEVNGKKQKAAIDIKPSLAAKAGQKLPGPFSQTSQARLPTHLFNAPGIAKPQLL 222
Query: 176 FKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA-------------------IESF- 215
F+ VDNS + + P L K +A+ PL + + D+ I F
Sbjct: 223 FQDGVDNSPDARWSPTLPVKEHAMVPLGHTISEDDSWPMGEMDDDPKKVAARREKIAKFE 282
Query: 216 CHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPY YE P + DTP I PEQ+ L LK+ +EIA+DL
Sbjct: 283 QHPYYYETRHLPYPTSMFTSSTPIRPKSFEDTPFEFIDTPEQLAALTETLKKAKEIAVDL 342
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV--LNEVLTDKNIVKVFHGADSDI 333
E+HN RSY G+TCLMQISTR+ D+I+DTL LR +L L V D ++VKVFHGADSDI
Sbjct: 343 EHHNQRSYYGFTCLMQISTREGDWIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDI 402
Query: 334 KWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 393
WLQ+DF +Y+V +FDT+ A K L P+ SLA LL+ YCD + DK +Q+ DWR RP+P+
Sbjct: 403 VWLQEDFDIYIVNLFDTYHATKVLEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDE 462
Query: 394 AIQYARTDTHYLLYVYDCMKLDLSAAA 420
++YAR+DTH+LL++YD ++ L A A
Sbjct: 463 MMKYARSDTHFLLFIYDNLRNALIARA 489
>gi|401887667|gb|EJT51646.1| hypothetical protein A1Q1_07058 [Trichosporon asahii var. asahii
CBS 2479]
Length = 906
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 223/447 (49%), Gaps = 46/447 (10%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSL-LIASPNYISGVAGTSDKVMTLVDSLL 77
S F V N K++ T A FP + + + G+ T +V+ L D LL
Sbjct: 44 STDFAGFVDNMTKALEASTSAAAGFPDKSDLAFHRTLDRKFAKGLDATGQRVLDLTDRLL 103
Query: 78 KTQNISKSMSKLYLEGQK-----------DILTEANDKLLESINTRIDVMAGTKTPSVLP 126
+ + S K G K D++ ++E I+ ++ G+ ++L
Sbjct: 104 QLA-VEGSQEKTKAAGGKVKPRRKVTDEDDVVDSFQATVIEFIDALLEDAVGSGCRTLLT 162
Query: 127 SQPKIVKESWNKNAKAS---------NVWQEVHDNKKKSANWFMLNK--GAVEIERPQLQ 175
+ + E K KA+ Q++ +++ + A I +PQL
Sbjct: 163 LKDSNLDEVNGKKQKAAIDIKPSLAAKAGQKLPGPFSQTSQARLPTHLFNAPGIAKPQLL 222
Query: 176 FKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA-------------------IESF- 215
F+ VDNS + + P L K +A+ PL + + D+ I F
Sbjct: 223 FQDGVDNSPDARWSPTLPVKEHAMVPLGHTISEDDSWPMGEMDDDPKKVAARREKIAKFE 282
Query: 216 CHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPY YE P + DTP I PEQ+ L LK+ +EIA+DL
Sbjct: 283 QHPYYYETRHLPYPTSMFTSSTPIRPKSFEDTPFEFIDTPEQLAALTETLKKAKEIAVDL 342
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV--LNEVLTDKNIVKVFHGADSDI 333
E+HN RSY G+TCLMQISTR+ D+I+DTL LR +L L V D ++VKVFHGADSDI
Sbjct: 343 EHHNQRSYYGFTCLMQISTREGDWIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDI 402
Query: 334 KWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 393
WLQ+DF +Y+V +FDT+ A K L P+ SLA LL+ YCD + DK +Q+ DWR RP+P+
Sbjct: 403 VWLQEDFDIYIVNLFDTYHATKVLEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDE 462
Query: 394 AIQYARTDTHYLLYVYDCMKLDLSAAA 420
++YAR+DTH+LL++YD ++ L A A
Sbjct: 463 MMKYARSDTHFLLFIYDNLRNALIARA 489
>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii GT1]
Length = 1353
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 205/382 (53%), Gaps = 45/382 (11%)
Query: 197 NALKPLAILLEKYDAIESFCHPYEYEL-------------DLYVPKEDFLKCEEPKQALP 243
L P A + + E H YE EL D D +P++ P
Sbjct: 396 TGLSPSARMSNGGEETEPLPHVYEAELLALTWTGPNGEAVDGVYGGPDLFTVSKPRRWKP 455
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQE--IAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
L DTPL+ I E E++ +LV EL +AIDLE+H++ SY+G+TCL+Q+STR+KDYI+
Sbjct: 456 LKDTPLVRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYII 515
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP- 360
D L + L VLN + + I+K+FHGADSDI WLQ+DF +YVV MFDT A + L +P
Sbjct: 516 DPFALFDHLHVLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPG 575
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM------KL 414
SLA LL+ YC V+++K +QL DWR RPL YAR+DTHYL +++D M K
Sbjct: 576 GASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKP 635
Query: 415 DLSAAAH----------------GKQNLVLSTFTNSRNIC-KLKYEKPVFN--EEGYMNI 455
+L AA GKQ +++ T SR++C KL E P F+ E +
Sbjct: 636 ELGAALSPSAVTDFDGTLEVTEAGKQ-IMMFTMERSRDVCLKLHVEAP-FDAPAEAEALL 693
Query: 456 FRSHALLNNQQKYALRELYKWRDRIARDKDES-TGYVLPNHMLLQMAQSIPRDIQGIFAC 514
R+ A L+ EL KWRD +AR D S P H+LL +AQ P A
Sbjct: 694 KRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLL-LAQKRPTSAVEFAAA 752
Query: 515 CNPVPQTVKEHVLDIHAIILKA 536
P P T+++H+ ++ +I ++
Sbjct: 753 MRPAPPTLRQHMPELIQLIQRS 774
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 579 ELYKWRDRIARDKDES-TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
EL KWRD +AR D S P H+LL +AQ P A P P T+++H+ ++
Sbjct: 710 ELLKWRDTLARRLDRSPVSLATPAHLLL-LAQKRPTSAVEFAAAMRPAPPTLRQHMPELI 768
Query: 638 AIILK---------------ARLQPLTKPVEKLQPS--LDGMKKKKQQQQ 670
+I + + L PL P PS D K+K++ +
Sbjct: 769 QLIQRSLSDSEAAQRAASCSSLLSPLVAPEASPPPSDFFDDKKRKRRSTE 818
>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii VEG]
Length = 1353
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 205/382 (53%), Gaps = 45/382 (11%)
Query: 197 NALKPLAILLEKYDAIESFCHPYEYEL-------------DLYVPKEDFLKCEEPKQALP 243
L P A + + E H YE EL D D +P++ P
Sbjct: 396 TGLSPSARMSNGGEETEPLPHVYEAELLALTWTGPNGEAVDGVYGGPDLFTVSKPRRWKP 455
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQE--IAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
L DTPL+ I E E++ +LV EL +AIDLE+H++ SY+G+TCL+Q+STR+KDYI+
Sbjct: 456 LKDTPLVRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYII 515
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP- 360
D L + L VLN + + I+K+FHGADSDI WLQ+DF +YVV MFDT A + L +P
Sbjct: 516 DPFALFDHLHVLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPG 575
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM------KL 414
SLA LL+ YC V+++K +QL DWR RPL YAR+DTHYL +++D M K
Sbjct: 576 GASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKP 635
Query: 415 DLSAAAH----------------GKQNLVLSTFTNSRNIC-KLKYEKPVFN--EEGYMNI 455
+L AA GKQ +++ T SR++C KL E P F+ E +
Sbjct: 636 ELGAALSPSAVTDFDGTLEVTEAGKQ-IMMFTMERSRDVCLKLHVEAP-FDAPAEAEALL 693
Query: 456 FRSHALLNNQQKYALRELYKWRDRIARDKDES-TGYVLPNHMLLQMAQSIPRDIQGIFAC 514
R+ A L+ EL KWRD +AR D S P H+LL +AQ P A
Sbjct: 694 KRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLL-LAQKRPTSAVEFAAA 752
Query: 515 CNPVPQTVKEHVLDIHAIILKA 536
P P T+++H+ ++ +I ++
Sbjct: 753 MRPAPPTLRQHMPELIQLIQRS 774
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 579 ELYKWRDRIARDKDES-TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
EL KWRD +AR D S P H+LL +AQ P A P P T+++H+ ++
Sbjct: 710 ELLKWRDTLARRLDRSPVSLATPAHLLL-LAQKRPTSAVEFAAAMRPAPPTLRQHMPELI 768
Query: 638 AIILKA 643
+I ++
Sbjct: 769 QLIQRS 774
>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
Length = 1353
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 205/382 (53%), Gaps = 45/382 (11%)
Query: 197 NALKPLAILLEKYDAIESFCHPYEYEL-------------DLYVPKEDFLKCEEPKQALP 243
L P A + + E H YE EL D D +P++ P
Sbjct: 396 TGLSPSARMSNGGEETEPLPHVYEAELLALTWTGPNGEAVDGVYGGPDLFTVSKPRRWKP 455
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQE--IAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
L DTPL+ I E E++ +LV EL +AIDLE+H++ SY+G+TCL+Q+STR+KDYI+
Sbjct: 456 LKDTPLVRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYII 515
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP- 360
D L + L VLN + + I+K+FHGADSDI WLQ+DF +YVV MFDT A + L +P
Sbjct: 516 DPFALFDHLHVLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPG 575
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM------KL 414
SLA LL+ YC V+++K +QL DWR RPL YAR+DTHYL +++D M K
Sbjct: 576 GASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKP 635
Query: 415 DLSAAAH----------------GKQNLVLSTFTNSRNIC-KLKYEKPVFN--EEGYMNI 455
+L AA GKQ +++ T SR++C KL E P F+ E +
Sbjct: 636 ELGAALSPSAVTDFDGTLEVTEAGKQ-IMMFTMERSRDVCLKLHVEAP-FDAPAEAEALL 693
Query: 456 FRSHALLNNQQKYALRELYKWRDRIARDKDES-TGYVLPNHMLLQMAQSIPRDIQGIFAC 514
R+ A L+ EL KWRD +AR D S P H+LL +AQ P A
Sbjct: 694 KRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLL-LAQKRPTSAVEFAAA 752
Query: 515 CNPVPQTVKEHVLDIHAIILKA 536
P P T+++H+ ++ +I ++
Sbjct: 753 MRPAPPTLRQHMPELIQLIQRS 774
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 579 ELYKWRDRIARDKDES-TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
EL KWRD +AR D S P H+LL +AQ P A P P T+++H+ ++
Sbjct: 710 ELLKWRDTLARRLDRSPVSLATPAHLLL-LAQKRPTSAVEFAAAMRPAPPTLRQHMPELI 768
Query: 638 AIILKA 643
+I ++
Sbjct: 769 QLIQRS 774
>gi|401413034|ref|XP_003885964.1| Ribonuclease D, related [Neospora caninum Liverpool]
gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
Length = 1387
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 194/353 (54%), Gaps = 34/353 (9%)
Query: 218 PYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE--IAIDL 275
P + +D D EP++ PL DTPL+ I+E E++ LV EL +AIDL
Sbjct: 427 PEGHAVDGICGGPDLFTVGEPQRWKPLKDTPLVRISEKEELQHLVDELSTGAHPLVAIDL 486
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E+H++ SY+G+TCL+Q+STR+KDY++D L E L VLN + + I+K+FHGADSDI W
Sbjct: 487 EHHSFHSYRGFTCLLQLSTREKDYLIDPFPLFEHLHVLNAITANPKILKIFHGADSDIIW 546
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
LQ+DF +YVV MFDT A + L +P SLA LL YC V+++K +QL DWR RPL
Sbjct: 547 LQRDFSVYVVNMFDTCVAARALAVPGGASLANLLHTYCGVEANKQYQLADWRRRPLTPEM 606
Query: 395 IQYARTDTHYLLYVYDCMK------------------------LDLSAAAHGKQNLVLST 430
YAR+DTHYL +++D MK L+++ A G+Q + T
Sbjct: 607 EAYARSDTHYLPFIFDVMKNQLLSKPELGGALSPPAVTGLEEGLEVTEA--GQQAMQF-T 663
Query: 431 FTNSRNIC-KLKYEKPV-FNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES- 487
SR++C KL E P E + R+ A L+ EL KWRD +AR D S
Sbjct: 664 LDRSRDVCLKLHVEAPFDAPAEAEALLKRNRAGLSPLSYVVFIELLKWRDTLARRLDRSP 723
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
P H+LL +AQ P A P P T+++H ++ +I ++ L S
Sbjct: 724 VSLATPAHLLL-LAQKRPTSTIEFNAAMRPAPPTLRQHTQELIQLIQRSLLGS 775
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 579 ELYKWRDRIARDKDES-TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
EL KWRD +AR D S P H+LL +AQ P A P P T+++H ++
Sbjct: 707 ELLKWRDTLARRLDRSPVSLATPAHLLL-LAQKRPTSTIEFNAAMRPAPPTLRQHTQELI 765
Query: 638 AIILKARL 645
+I ++ L
Sbjct: 766 QLIQRSLL 773
>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
Length = 854
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 187/346 (54%), Gaps = 50/346 (14%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
I RPQ ++ VDNS + FE LEK D HP E +P
Sbjct: 167 IPRPQDVHRILVDNS-SKPFEHSW-------------LEKSDDGSRVVHPLEK-----IP 207
Query: 229 KEDFLKCE----EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
E + + EP + L L DTP + + + + L ++LK E AI
Sbjct: 208 MEQLVDRDFPESEPIKPLALDDTPFTHVEDLKSLEVLATKLKSATEFAI----------- 256
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
STR +D+IVDTLKLR+ L + L E+ D KV HGAD DI WLQ+DFG+Y
Sbjct: 257 --------STRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIY 308
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
V +FDT QA + L M R SL +LL H+C V ++K +Q DWR RPLP+ I+YAR DTH
Sbjct: 309 VCNLFDTGQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTH 368
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLN 463
YLLY+YD M+L L + + +L+L + S+ IC YEK + Y+ I H L
Sbjct: 369 YLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYI---HGLKE 425
Query: 464 NQ----QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
N+ Q L +YKWRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 426 NEFDARQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMP 471
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
+Q L +YKWRD +AR +DESTGY+LPN LL++A+ +P
Sbjct: 431 RQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMP 471
>gi|342319925|gb|EGU11870.1| Hypothetical Protein RTG_02115 [Rhodotorula glutinis ATCC 204091]
Length = 966
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 183/328 (55%), Gaps = 39/328 (11%)
Query: 215 FCHPYEYELDLYVPKEDFLKCEE---PKQALPLSDTPLMMITEPEQVTQLVSELKQQQE- 270
+ HPY EL P F + P A + TP + + + + ++V+ ++Q E
Sbjct: 236 YAHPYASELASLRPPSSFFNKPQKPAPHPADSFTKTPFEWVGDEKALEKMVAGIRQVGEE 295
Query: 271 ----IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL--KLREDLEVLNEVLTDKNIVK 324
+AIDLE+H++R++ G TCL+Q+STR KDYI+D + +RE+LE LNE T+ +K
Sbjct: 296 GMKDLAIDLEHHDFRTWSGMTCLIQLSTRKKDYIIDAIDPGVRENLESLNEFFTNPEWIK 355
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
V HGA SDI WLQ+DFGLY+VG+FDT+ A L + SLA LL Y D + DK +QL D
Sbjct: 356 VLHGAKSDIVWLQRDFGLYIVGLFDTYHATHVLGYAQHSLASLLDMYTDFEPDKRYQLAD 415
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQNLVLSTFTNSRNICKLK 441
WR RPLP+ +QYAR+DTHYLL +YD ++L L AA+ + + F S + +
Sbjct: 416 WRIRPLPKEMLQYARSDTHYLLSIYDHLRLALHAKGAASKETPSPIEDVFNRSIPVSAIT 475
Query: 442 YEKPVFN------EEGYMNIFRSHALL--------------------NNQQKYALRELYK 475
+ P F+ E G++ H L + LRE+ +
Sbjct: 476 FSLPPFDHETGHFESGFLVPLARHGQLKAYSTALAVPTLPIKTGWGPGEAKLEVLREVTR 535
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQS 503
WR+++AR++DEST YVL +LQ+ ++
Sbjct: 536 WREKVAREEDESTRYVLSLQGVLQITET 563
>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 635
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 236/444 (53%), Gaps = 26/444 (5%)
Query: 17 ELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSL 76
++S F + ++V+ TKT + +P+ S + S + +TL +S+
Sbjct: 2 DISAEFTPFQERLTTALVQATKTTSQLLAEDIAFQRSINPSLSSSLDEQSSRFLTLTNSI 61
Query: 77 LKTQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPK 130
L+ S ++ LE ++ + + + D+LLE + +D G + PSQ +
Sbjct: 62 LRFATSSSDLNVATLEDEETVDENWRAVVDVIDELLEKADACLDEFTGV-IKKLTPSQDE 120
Query: 131 IVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEP 190
+ ++K A S + V+D + ++ +PQL F + +N F P
Sbjct: 121 -RGQDFSKRASRSQ-FPSVYDF------------SSAKLPKPQLSFNNRPNNHDSSPFRP 166
Query: 191 KLKEKPNALKPLAILLEKYDAI--ESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDT 247
L++KP+A+ L + + I E HPY +E+ + P + K E P+ P T
Sbjct: 167 ILRQKPHAIVSLPLSPDPAAGIGTEPSEHPYAHEIRNCRYPPSVYYKSE-PQMYQPFEST 225
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL-KL 306
+ E V ++ ELK +EI IDLE+H+ SY G CLMQISTRDKD+IVDTL
Sbjct: 226 SATFVNTMEGVQAMLKELKCAKEIGIDLEHHDTHSYYGLVCLMQISTRDKDWIVDTLLPW 285
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
RE+L++LNEV + IVKV HG+ D+ WLQ+D GLY+VG+FDT+ A L P++SL +
Sbjct: 286 REELQILNEVFANPQIVKVLHGSSMDVIWLQRDLGLYLVGLFDTYHAAAALHYPKKSLKF 345
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LL + + ++K +Q+ DWR RPL YAR+DTHYLLY+YD ++ +L + +NL
Sbjct: 346 LLDKFVNFQAEKKYQIADWRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERSTPGENL 405
Query: 427 VLSTFTNSRNICKLKYEKPVFNEE 450
+ NS+ +YE+PV++ E
Sbjct: 406 IDYVQENSKEEALQRYERPVYDTE 429
>gi|13278238|gb|AAH03952.1| Exosc10 protein, partial [Mus musculus]
Length = 517
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 147/209 (70%), Gaps = 1/209 (0%)
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQKDFGLYVV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE +
Sbjct: 5 LQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEML 64
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 455
YAR DTHYLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ +
Sbjct: 65 SYARDDTHYLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLEL 124
Query: 456 FRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
+R LN+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI AC
Sbjct: 125 YRKQKKHLNSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIAC 184
Query: 515 CNPVPQTVKEHVLDIHAIILKARLQSLTK 543
CNPVP V++ + ++H +I +AR L K
Sbjct: 185 CNPVPPLVRQQINEMHLLIQQAREMPLLK 213
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 133 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 192
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 193 RQQINEMHLLIQQAREMPLLK 213
>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
Length = 882
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 185/347 (53%), Gaps = 52/347 (14%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA-ILLEKYDAIESFCHPYEYELDLYV 227
I RPQ +++ VDNS KP +LLE+ + HP E +
Sbjct: 198 IPRPQDVYRIVVDNSS---------------KPFEHVLLERSEDGTRVMHPLEK-----L 237
Query: 228 PKEDFLKC----EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
P E + EP + L DTP + + + + L ++LK E AI
Sbjct: 238 PVEQQINRNVLDSEPVKPPALVDTPFTFVEDLKTLEVLATKLKDATEFAI---------- 287
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGL 342
STR +D+IVDTLKLR+ L + L E D KV HGA DI WLQ+DF +
Sbjct: 288 ---------STRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSI 338
Query: 343 YVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDT 402
YV +FDT QA K L M R SL +LL H+C V ++K +Q DWR RPLP+ I+YAR DT
Sbjct: 339 YVCNLFDTGQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDT 398
Query: 403 HYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL- 461
HYLLY+YD M+L L + G+ +L+L S IC YEK + Y++I H L
Sbjct: 399 HYLLYIYDLMRLRLVNESSGENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHI---HGLK 455
Query: 462 ---LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
LN +Q L LY+WRD IAR +DESTGY+LPN LL++A+ +P
Sbjct: 456 ENELNARQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMP 502
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
N +Q L LY+WRD IAR +DESTGY+LPN LL++A+ +P
Sbjct: 460 NARQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMP 502
>gi|195328901|ref|XP_002031150.1| GM25821 [Drosophila sechellia]
gi|194120093|gb|EDW42136.1| GM25821 [Drosophila sechellia]
Length = 532
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 150/227 (66%), Gaps = 6/227 (2%)
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
MFDTH+A K L M R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+
Sbjct: 1 MFDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLI 60
Query: 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQ 465
YVY+ M DL + L+ S + S ++CK +Y KP E ++++ R + +N+
Sbjct: 61 YVYERMTNDL-LQQQAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNR 119
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++
Sbjct: 120 QLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQ 179
Query: 526 VLDIHAIILKARLQSLTKPV----EKLQPSLDGMKKKQQQQVSPPHD 568
+ +H I+LKAR Q L KP+ Q SL K ++ PHD
Sbjct: 180 LHTLHQIVLKARDQPLVKPILEARSSTQASLPPSTKDFSSKLYCPHD 226
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 68/83 (81%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 117 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 176
Query: 630 KEHVLDIHAIILKARLQPLTKPV 652
++ + +H I+LKAR QPL KP+
Sbjct: 177 RQQLHTLHQIVLKARDQPLVKPI 199
>gi|414886886|tpg|DAA62900.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 960
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 200/368 (54%), Gaps = 22/368 (5%)
Query: 164 KGAVEIERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYE 222
+ E E+PQ +FK V DNSY P+ K L + HP+E E
Sbjct: 52 RACEEEEKPQDRFKRVLADNSYSPFKHPRRKSAQLGSAEGEAPLPPPQELSQKGHPFEEE 111
Query: 223 LDLYVPK----EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
+ + F+ C+ Q +S T + TE Q+ L L +++ A+D E H
Sbjct: 112 ITSLLKNPPGFHSFMLCD---QCPEMSATYNWVHTE-TQLEHLARLLGEERAFAVDTEQH 167
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
+ RS+ GYT LMQIST+++DY++DT+ L + + +L V + +I K+FHGAD+DI WLQ+
Sbjct: 168 SIRSFLGYTALMQISTQNEDYLIDTIALHDVMGILRPVFANSSICKIFHGADNDILWLQR 227
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
DF +YVV MFDT +AC+ L P++SLAYLL+ YC+V +DKT Q DWR RPL I+YA
Sbjct: 228 DFHIYVVNMFDTAKACEILLKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYA 287
Query: 399 RTDTHYLLYVYDCMKLDLSAAAH---GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 455
RTD HYLLY+ +C+ +L A A+ K N S +C Y K + + G +
Sbjct: 288 RTDAHYLLYIANCLASELHAKAYTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSA 347
Query: 456 -------FRSHAL---LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
++H +++ K + + WRD +AR DES YVLP+ + +A S+P
Sbjct: 348 TSILSRNLQTHGFDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
Query: 506 RDIQGIFA 513
+ +FA
Sbjct: 408 KGPTEVFA 415
>gi|414886885|tpg|DAA62899.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 951
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 200/368 (54%), Gaps = 22/368 (5%)
Query: 164 KGAVEIERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYE 222
+ E E+PQ +FK V DNSY P+ K L + HP+E E
Sbjct: 52 RACEEEEKPQDRFKRVLADNSYSPFKHPRRKSAQLGSAEGEAPLPPPQELSQKGHPFEEE 111
Query: 223 LDLYVPK----EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
+ + F+ C+ Q +S T + TE Q+ L L +++ A+D E H
Sbjct: 112 ITSLLKNPPGFHSFMLCD---QCPEMSATYNWVHTE-TQLEHLARLLGEERAFAVDTEQH 167
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
+ RS+ GYT LMQIST+++DY++DT+ L + + +L V + +I K+FHGAD+DI WLQ+
Sbjct: 168 SIRSFLGYTALMQISTQNEDYLIDTIALHDVMGILRPVFANSSICKIFHGADNDILWLQR 227
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
DF +YVV MFDT +AC+ L P++SLAYLL+ YC+V +DKT Q DWR RPL I+YA
Sbjct: 228 DFHIYVVNMFDTAKACEILLKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYA 287
Query: 399 RTDTHYLLYVYDCMKLDLSAAAHG---KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 455
RTD HYLLY+ +C+ +L A A+ K N S +C Y K + + G +
Sbjct: 288 RTDAHYLLYIANCLASELHAKAYTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSA 347
Query: 456 -------FRSHAL---LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
++H +++ K + + WRD +AR DES YVLP+ + +A S+P
Sbjct: 348 TSILSRNLQTHGFDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
Query: 506 RDIQGIFA 513
+ +FA
Sbjct: 408 KGPTEVFA 415
>gi|164655640|ref|XP_001728949.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
gi|159102837|gb|EDP41735.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
Length = 849
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 229/456 (50%), Gaps = 64/456 (14%)
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLK-EKPNALKPL------------AILLEKYDA-I 212
+I +PQ +F + DN +E + KPNA P+ AI+ +Y
Sbjct: 143 ADIPKPQDKFSRQPDNRANTPWERTFQFGKPNARVPIGWRDPSWNVSSDAIIEGQYGTEG 202
Query: 213 ESFCHPYEYELD-LYVPKEDF----------LKCEEPKQALPLSDTPLMMITEPEQVTQL 261
+ PY E+ VP+ F L+ E P + P + + E+V QL
Sbjct: 203 DPRLGPYYVEIQQTPVPESAFHVGNAEAPVPLRIENPGSSQPCD---FVWVDSAEKVRQL 259
Query: 262 VSELKQQQ--EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL--KLREDLEVLNEVL 317
L++++ EIA+DLE+HN RSYQG CLMQISTR D+IVDTL ++RE E+LN
Sbjct: 260 QKHLEEERVTEIAVDLEHHNQRSYQGIVCLMQISTRWGDWIVDTLVDEVRESAELLNTAF 319
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD 377
T + V V HGAD DI WLQ+D GLYV +FDT QA + L SLA+LL Y + ++D
Sbjct: 320 THPDKVLVLHGADHDILWLQRDLGLYVTNLFDTFQAARALQFGALSLAFLLLRYTNFEAD 379
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNI 437
K FQ DWR RPLP + YAR+DTH LLYVYDC++ +L G V F S+
Sbjct: 380 KRFQTADWRIRPLPREMLFYARSDTHALLYVYDCLRNEL--LQRGGPLAVKEVFDRSKPT 437
Query: 438 CKLKYEKPVFNEEGYM-------------NIFRSH------ALLNNQQKYALRELYKWRD 478
Y K ++E G ++ R+ A L +++ +R L+ WRD
Sbjct: 438 ASKVYAKEPWDERGNSRGGWKSLWIRMGGDLARASQDAPPDAPLGREERI-VRRLHHWRD 496
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI--------H 530
++AR +DES +V+P +L+Q+A P ++ A P + V+ + ++ H
Sbjct: 497 QVARKEDESPAFVMPPRVLIQLALRPPLNLSEAKARTPPSLKFVRSRLDELVKTVKDEWH 556
Query: 531 AIILKARLQSLT--KPVEKLQPSLDGMKKKQQQQVS 564
A + R +SL V+KL L K + ++ +
Sbjct: 557 AYLSDVRPESLGDESTVDKLGEPLSSSKTEAEEDLG 592
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 554 GMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 613
G + Q +PP +++ +R L+ WRD++AR +DES +V+P +L+Q+A P
Sbjct: 465 GGDLARASQDAPPDAPLGREERIVRRLHHWRDQVARKEDESPAFVMPPRVLIQLALRPPL 524
Query: 614 DIQGIFACCNP 624
++ A P
Sbjct: 525 NLSEAKARTPP 535
>gi|449493231|ref|XP_004159228.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101225221 [Cucumis sativus]
Length = 877
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 206/399 (51%), Gaps = 50/399 (12%)
Query: 170 ERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYE----LD 224
++PQ FK V DNSY KL + + S HPYE E L+
Sbjct: 44 QKPQYAFKRVLADNSYSAFKHLKLNMNKGIYN---------NDVNS--HPYESEILSLLE 92
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
P+ +F+ + L LSDT + Q+ +LV L ++ A+D E H+ RS+
Sbjct: 93 NSSPEFNFIS---ERTDLTLSDT-YAWVETVSQLEELVDVLNKEMVFAVDTEQHSLRSFL 148
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G+T L+QIST +DY+VDT+ L + L +L V + I KVFHGAD+DI WLQ+DF +YV
Sbjct: 149 GFTALIQISTHKEDYLVDTIALHDSLNLLRPVFANSRICKVFHGADNDILWLQRDFHIYV 208
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT +AC+ L P++SLAYLL+ YC V ++K Q DWR RPLP +QYARTD HY
Sbjct: 209 VNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHY 268
Query: 405 LLYVYDCMKLDL-----SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------- 451
LLY+ +C+ ++L +++ K N +L S C Y K G
Sbjct: 269 LLYIANCLLVELKQVNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIW 328
Query: 452 --YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
++N AL++ + + +R L WRD +AR DES YVL + ++ +A +P++
Sbjct: 329 SRHLNSQGGSALISCKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTG 388
Query: 510 GIFACCNPV---------------PQTVKEHVLDIHAII 533
++A V V H+ DIH ++
Sbjct: 389 ELYATIAQVDLNVDLSSSLFLPSPSSVVCSHLDDIHCLL 427
>gi|449453692|ref|XP_004144590.1| PREDICTED: uncharacterized protein LOC101204374 [Cucumis sativus]
Length = 877
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/399 (34%), Positives = 206/399 (51%), Gaps = 50/399 (12%)
Query: 170 ERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYE----LD 224
++PQ FK V DNSY KL + + S HPYE E L+
Sbjct: 44 QKPQYAFKRVLADNSYSAFKHLKLNMNKGIYN---------NDVNS--HPYESEILSLLE 92
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
P+ +F+ + L LSDT + Q+ +LV L ++ A+D E H+ RS+
Sbjct: 93 NSSPEFNFIS---ERTDLTLSDT-YAWVETVSQLEELVDVLNKEMVFAVDTEQHSLRSFL 148
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G+T L+QIST +DY+VDT+ L + + +L V + I KVFHGAD+DI WLQ+DF +YV
Sbjct: 149 GFTALIQISTHKEDYLVDTIALHDSMNLLRPVFANSRICKVFHGADNDILWLQRDFHIYV 208
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
V +FDT +AC+ L P++SLAYLL+ YC V ++K Q DWR RPLP +QYARTD HY
Sbjct: 209 VNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHY 268
Query: 405 LLYVYDCMKLDL-----SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG-------- 451
LLY+ +C+ ++L +++ K N +L S C Y K G
Sbjct: 269 LLYIANCLLVELKQVNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIW 328
Query: 452 --YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
++N AL++ + + +R L WRD +AR DES YVL + ++ +A +P++
Sbjct: 329 SRHLNSQGGSALISCKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTG 388
Query: 510 GIFACCNPV---------------PQTVKEHVLDIHAII 533
++A V V H+ DIH ++
Sbjct: 389 ELYATIAQVDLNVDLSSSLFLPSPSSVVCSHLDDIHCLL 427
>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704625|gb|EMD44835.1| exosome complex exonuclease RRP6, putative [Entamoeba histolytica
KU27]
Length = 517
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 196/359 (54%), Gaps = 20/359 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYEL-DLYV 227
I +PQL F K DN + ++PK +K ++ P +++ HPY E+ +L
Sbjct: 118 INKPQLNFTDKPDN-FSVEYKPKCIKKYHSKYP----------VDAQPHPYINEIHELKQ 166
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
KC P+ L TPL+ + E + +++ L + A+D+E+H+ SY G+
Sbjct: 167 MDWQLEKCT-PQPPLSFEKTPLIYVNTLELLQEMIVSLNHVNQFAVDVEHHSEHSYYGFV 225
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CL+QISTR DYI+DT+ LR+ + +LN+ T+ NI KVFHG D D+ WL +FGLYVV
Sbjct: 226 CLLQISTRSSDYIIDTITLRDSITLLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNC 285
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
D+ Q + L + SL YLL+ YC+VD+DK +QL DWR RPL + I+YAR DTHYLLY
Sbjct: 286 IDSGQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLY 345
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQK 467
+ D ++ + A VL N N L+ +P + + + + Q
Sbjct: 346 IIDQLRNECIDAG------VLEEVLNKSNELCLRLFRPTVCSDDVIERVARRSWIKKTQF 399
Query: 468 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP-VPQTVKEH 525
++LY RD+IAR +DES V+ ML + +P D++ + CC P VP V+ H
Sbjct: 400 DTFKKLYLLRDKIARIEDESPEAVINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMH 458
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP-VPQTVKEH 632
++LY RD+IAR +DES V+ ML + +P D++ + CC P VP V+ H
Sbjct: 401 TFKKLYLLRDKIARIEDESPEAVINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMH 458
>gi|407036010|gb|EKE37956.1| exosome component 10, putative [Entamoeba nuttalli P19]
Length = 517
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 196/359 (54%), Gaps = 20/359 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYEL-DLYV 227
I +PQL F K DN + ++PK +K ++ P +++ HPY E+ +L
Sbjct: 118 INKPQLNFTDKPDN-FSVEYKPKCIKKYHSKYP----------VDAQPHPYINEIHELKQ 166
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
KC P+ L TPL+ + E + +++ L + A+D+E+H+ SY G+
Sbjct: 167 MSWQLEKCT-PQPPLSFEKTPLIYVNTLELLQEMIISLNHVNQFAVDVEHHSEHSYYGFV 225
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CL+QISTR DYI+DT+ LR+ + +LN+ T+ NI KVFHG D D+ WL +FGLYVV
Sbjct: 226 CLLQISTRSSDYIIDTITLRDSITLLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNC 285
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
D+ Q + L + SL YLL+ YC+VD+DK +QL DWR RPL + I+YAR DTHYLLY
Sbjct: 286 IDSGQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLY 345
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQK 467
+ D ++ + A VL N N L+ +P + + + + Q
Sbjct: 346 IIDQLRNECIDAG------VLEEVLNKSNELCLRLFRPTVCSDDVIERVARRSWIKKTQF 399
Query: 468 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP-VPQTVKEH 525
++LY RD+IAR +DES ++ ML + +P D++ + CC P VP V+ H
Sbjct: 400 DTFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMH 458
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP-VPQTVKEH 632
++LY RD+IAR +DES ++ ML + +P D++ + CC P VP V+ H
Sbjct: 401 TFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMH 458
>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 148/224 (66%), Gaps = 4/224 (1%)
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTLKLR + L E+ D KV HGAD DI WLQ+DF +Y
Sbjct: 1 GLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVY 60
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
V +FDT QA + L M R SL +LL H+C V ++K +Q DWR RPL + I+YAR DTH
Sbjct: 61 VCNLFDTGQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTH 120
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF--RSHAL 461
YLLY+YD M+L L + + +L+L S +IC YEK + ++ Y++I+ + H
Sbjct: 121 YLLYIYDLMRLRLQRESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHE- 179
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
L Q + L++WRD IARD+DESTGYVLPN L+++A+ +P
Sbjct: 180 LTAAQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMP 223
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
H+ Q + L++WRD IARD+DESTGYVLPN L+++A+ +P
Sbjct: 178 HELTAAQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMP 223
>gi|440292006|gb|ELP85248.1| exosome complex exonuclease RRP6, putative [Entamoeba invadens IP1]
Length = 517
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 204/361 (56%), Gaps = 20/361 (5%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYEL-DLYVPK 229
+PQ +F K DN + + PK +K ++ P + + HPY E+ +L + +
Sbjct: 119 KPQTKFTDKPDN-FATTYTPKCLKKYHSDYP----------VNTVPHPYINEIRNLQLSE 167
Query: 230 EDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCL 289
+ C P+ L +TPL+ + +++ +L+ L + A+D+E+H+ SY G+ CL
Sbjct: 168 WQKVPCN-PQAPLSFENTPLLFVQNMDELNRLIKTLNNVDQFAVDVEHHSEHSYNGFACL 226
Query: 290 MQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD 349
MQISTR +D++VD + LR+ + +LNE T+ I KVFHG D D+ WL +FGLYVV FD
Sbjct: 227 MQISTRSEDFVVDVITLRDSIHLLNEPFTNPKIEKVFHGCDFDMVWLSYNFGLYVVNNFD 286
Query: 350 THQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
+ QA + L + SL +LL+ Y V++DK +QL DWR RPL + I YAR DTHYLLY+
Sbjct: 287 SGQAARCLKLQHFSLKFLLEKYVGVEADKKYQLADWRIRPLTQEMINYARGDTHYLLYIC 346
Query: 410 DCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA 469
D M+ + +QN++ S +C ++ ++N+ I + + +Q K A
Sbjct: 347 DLMRNECL-----EQNVLYEVQAKSNELCLRLFKPTIYNDAAVERIAKKSWIKKSQFK-A 400
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI-FACCNPVPQTVKEHVLD 528
++L+ RD+IAR++DES ++ +L + +P D + + AC +P V+ H ++
Sbjct: 401 FKKLFLLRDKIAREEDESPHSIMSQSVLNSILSEVPTDFEKLKMACLPKIPYFVEMHSME 460
Query: 529 I 529
I
Sbjct: 461 I 461
Score = 40.4 bits (93), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI-FACCNPVPQTVKEHVL 634
A ++L+ RD+IAR++DES ++ +L + +P D + + AC +P V+ H +
Sbjct: 400 AFKKLFLLRDKIAREEDESPHSIMSQSVLNSILSEVPTDFEKLKMACLPKIPYFVEMHSM 459
Query: 635 DI 636
+I
Sbjct: 460 EI 461
>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
SAW760]
Length = 517
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/359 (35%), Positives = 195/359 (54%), Gaps = 20/359 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYEL-DLYV 227
I +PQL F K DN + ++PK +K ++ P +++ HPY E+ +L
Sbjct: 118 INKPQLNFTDKPDN-FSVEYKPKCIKKYHSKYP----------VDTQPHPYINEIHELKQ 166
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
KC P+ L TPL+ + E + +++ L + A+D+E+H+ SY G+
Sbjct: 167 MGWQLEKCT-PQPPLSFEKTPLVYVNTLELLQEMIISLNHVNQFAVDVEHHSEHSYYGFV 225
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CL+QISTR DYI+DT+ LR+ + +LN+ T+ NI KVFHG D D+ WL +FGLYVV
Sbjct: 226 CLLQISTRSSDYIIDTITLRDSITLLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNC 285
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
D+ Q + L + SL YLL+ YC+VD+DK +QL DWR RPL + I+YAR DTHYLLY
Sbjct: 286 IDSGQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLY 345
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQK 467
+ D ++ + +L N N L+ +P + + + + Q
Sbjct: 346 IIDQLRNECIDVG------ILEEVLNKSNELCLRLFRPTVCSDDVIERVARRSWIKKTQF 399
Query: 468 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP-VPQTVKEH 525
++LY RD+IAR +DES ++ ML + +P D++ + CC P VP V+ H
Sbjct: 400 DTFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMH 458
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP-VPQTVKEH 632
++LY RD+IAR +DES ++ ML + +P D++ + CC P VP V+ H
Sbjct: 401 TFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMH 458
>gi|385304629|gb|EIF48639.1| putative nuclear exosome component rrp6p [Dekkera bruxellensis
AWRI1499]
Length = 607
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/379 (35%), Positives = 205/379 (54%), Gaps = 47/379 (12%)
Query: 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYE- 222
+IE+PQ +F KVDN + F+PK+ KPNA+ P +E A E+ + +PYEYE
Sbjct: 108 KIEKPQTKFVPKVDNFEKHPFKPKIDSKPNAVIPFEKSMELVPASEAIPQHYINPYEYEI 167
Query: 223 LDLYVPKEDFLKCEEPKQALPLSDTPL-MMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
++ P F E P ++P +P + EQ+ L+SEL++ + I +DLE+H+YR
Sbjct: 168 MNAKYPDWIFSPIEHPYTSVPWKSSPQPGWVDNVEQLKALLSELEKCKVIGVDLEHHDYR 227
Query: 282 SYQGYTCLMQIST-RDKDYIVDTL--KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
+Y G T LMQIST KDYIVD L +LR L +LN V T+ +I+KVFHGA D+ WLQ+
Sbjct: 228 TYHGLTSLMQISTDTGKDYIVDPLSAQLRPHLSLLNIVFTNPDIIKVFHGAFMDMMWLQR 287
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
D GLYVV +FDT+ A K L + + SLA+LL+ Y + K +QL DWR RPL YA
Sbjct: 288 DLGLYVVSLFDTYWAAKELTLGKYSLAFLLEKYIHFRTSKKWQLADWRIRPLGPEMRNYA 347
Query: 399 RTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVF----------- 447
+ DTH+L+ ++ ++ +L + ++ +SR + ++E +
Sbjct: 348 KADTHFLIELFGKIQXELIXKPGAMKRVLY----HSRKVSNRRFEYATYKPRNATAFGVV 403
Query: 448 ----------------------NEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
E ++++ RS+ + + + + LYKWRD AR +D
Sbjct: 404 STGGSVPLTPEFQDALFSFDTSRELPWLSLMRSNGIPDTKGP-VVEALYKWRDNKARKED 462
Query: 486 ESTGYVLPNHMLLQMAQSI 504
ES Y++ + +L +A S
Sbjct: 463 ESIRYIMSDFVLTSLANSF 481
>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
Length = 935
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 189/358 (52%), Gaps = 39/358 (10%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPK 229
+PQ FK V DNSY KL E N+ L HPYE E+ +
Sbjct: 47 KPQYSFKLVLADNSYSAFKHLKLGES-NSETSL------------HSHPYEAEISALLEN 93
Query: 230 EDF-LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L +SD+ + + TE Q+ +L L +Q+ A+D E H+ RS+ G+T
Sbjct: 94 AEIEFSFGTESMDLKISDSYVWVETEL-QLKELADVLSKQRVFAVDTEQHSLRSFLGFTA 152
Query: 289 LMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
L+QIST+++DY+VDT+ L + L+VL V + +I KVFHGAD+D+ WLQ+DF +YVV +F
Sbjct: 153 LIQISTQNEDYLVDTIALHDTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLF 212
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT +AC+ L P++SLAYLL+ YC V ++K Q DWR RPL ++YA+TD HYLLY+
Sbjct: 213 DTAKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYI 272
Query: 409 YDCMKLDL-------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVF---NEEGYMNIFRS 458
+C+ +L S K VL S +C Y K + E +I
Sbjct: 273 ANCLIAELRQHDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISR 332
Query: 459 HALLNNQQKYA-----------LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
H LN Q + +R L WRD +AR DES YVL + ++ +A +P
Sbjct: 333 H--LNGQGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVP 388
>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Ogataea parapolymorpha DL-1]
Length = 729
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 207/395 (52%), Gaps = 55/395 (13%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLA----ILLEKYDAIESFCHPYEY 221
+++IE+PQL FK V+N F+P +K KPNAL PL ++ D E + +PY Y
Sbjct: 131 SLKIEKPQLLFKTPVNNFETSPFKPLIKTKPNALIPLQESMQLVSAAPDVPEHYENPYSY 190
Query: 222 ELDLYVPKEDF-LKCEEPKQALPL--SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
E+ + P D+ L+ +E ++P D P I P Q+ L+ EL + + IA+DLE+H
Sbjct: 191 EI-MNQPYPDWILQQQESFDSIPWKECDEP-TWIDNPAQLDDLLVELSKCKVIAVDLEHH 248
Query: 279 NYRSYQGYTCLMQIST-RDKDYIVDTL--KLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
+YR+Y G TCLMQ++T KDY++D L +LR L LN + TD NIVKVFHGA DI W
Sbjct: 249 DYRTYHGITCLMQLTTDTKKDYLIDPLSPELRPHLVNLNVIFTDPNIVKVFHGAFMDIIW 308
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+D GLYVV +FDT+ A + L + R SLA+LL+ Y + K +QL DWR RPL
Sbjct: 309 LQRDLGLYVVSLFDTYHASRELGLGRHSLAHLLETYVKFKTSKKWQLADWRMRPLNSEMK 368
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY--M 453
YA+ DTH+L+ V+ M +L + ++ SR + +YE F
Sbjct: 369 NYAKADTHFLIEVFYKMHSELVQNPDKLKKVLYE----SRKVSNRRYEYSTFKPRNVKSA 424
Query: 454 NIFRSHA--LLNNQ-----------------------------------QKYALRELYKW 476
N F S A + NQ ++ L L+KW
Sbjct: 425 NGFSSGAEVVATNQSVPQLPEFKNGLVSVHNPTNLPWSNLADSNSIPMAKRPLLEVLFKW 484
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
RD AR +DES Y++ + ML+ + + +D + +
Sbjct: 485 RDEQARREDESPRYIMSDFMLVSLVNAFSQDSEEV 519
>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
Length = 1449
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 173/303 (57%), Gaps = 8/303 (2%)
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
HPY E+ + + L E +Q L + P + I E + L L ++ E A+D E
Sbjct: 729 HPYGDEIRALL-EGPVLPLFETEQPLAEMEEPFVWIETKEALEDLAQVLSEESEFAVDTE 787
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
H+ RS+ G+T L+QIST +DY++D + L +++E L V + +I KVFHGADSDI WL
Sbjct: 788 QHSIRSFLGFTALIQISTYKRDYLIDAIALHDEMETLRPVFANASICKVFHGADSDILWL 847
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+DF +YVV +FDT +AC L P++SLAYLL+ YC++ ++K FQ DWR RPLPE +
Sbjct: 848 QRDFHIYVVNLFDTARACDVLGKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILL 907
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFT-NSRNICKLKYEKPVFNEEGYMNI 455
YAR+D H+LLY+ + +L N L T S IC YEK + ++
Sbjct: 908 YARSDAHFLLYIARKLYSELLQGETDLANAPLQMATRRSHLICLQLYEKDASSASAAASL 967
Query: 456 FRSHALLN------NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
F N + LR L +WRD +AR +DES +VL + ++ +A+++PR +
Sbjct: 968 FSKFQESNLDKPREASMRRRLRLLCEWRDAVARIEDESLRFVLSDAAIVAIARTLPRTGK 1027
Query: 510 GIF 512
++
Sbjct: 1028 EVY 1030
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 555 MKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 614
K Q+ + P +++ +++ LR L +WRD +AR +DES +VL + ++ +A+++PR
Sbjct: 968 FSKFQESNLDKPREASMRRR--LRLLCEWRDAVARIEDESLRFVLSDAAIVAIARTLPRT 1025
Query: 615 IQGIF 619
+ ++
Sbjct: 1026 GKEVY 1030
>gi|240254568|ref|NP_850189.5| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 891
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 204/365 (55%), Gaps = 39/365 (10%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP- 228
+PQ FK V DNSY + KL + ++ LEK S HPYE E+ + +
Sbjct: 50 KPQFGFKRVLADNSYSEFKHLKLVDASSSS------LEK----PSNGHPYETEITVLLEN 99
Query: 229 ---KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+ FL+ E +L +SD+ + + TE Q+ +L L ++Q A+D E H+ RS+ G
Sbjct: 100 PQIEFGFLRGE---CSLEMSDSYVWVETES-QLKELAEILAKEQVFAVDTEQHSLRSFLG 155
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+T L+QIST ++D++VDT+ L + + +L V +D NI KVFHGAD+D+ WLQ+DF +YVV
Sbjct: 156 FTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT +AC+ L P++SLAYLL+ C V ++K Q DWR RPL E ++YARTD HYL
Sbjct: 216 NMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYL 275
Query: 406 LYVYDCMKLDL------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN----I 455
LY+ D + +L S++ + + +L S C Y K + G I
Sbjct: 276 LYIADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSII 335
Query: 456 FR--------SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
+R S+ LN ++ +R+L WRD + R DEST YVL + ++ ++ P
Sbjct: 336 YRHLNGHGDKSNISLNAEE--LVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTT 393
Query: 508 IQGIF 512
+ I+
Sbjct: 394 TEEIY 398
>gi|225447009|ref|XP_002268685.1| PREDICTED: uncharacterized protein LOC100261955 [Vitis vinifera]
Length = 936
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 190/356 (53%), Gaps = 37/356 (10%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPK 229
+PQ FK V DNSY KL E + ++ S HPYE E+ +
Sbjct: 47 KPQYSFKLVLADNSYSAFKHLKLGESNSE-----------TSLHS--HPYEAEISALLEN 93
Query: 230 EDF-LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L +SD+ + + TE Q+ +L L +Q+ A+D E H+ RS+ G+T
Sbjct: 94 AEIEFSFGTESMDLKISDSYVWVETEL-QLKELADVLSKQRVFAVDTEQHSLRSFLGFTA 152
Query: 289 LMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
L+QIST+++DY+VDT+ L + L+VL V + +I KVFHGAD+D+ WLQ+DF +YVV +F
Sbjct: 153 LIQISTQNEDYLVDTIALHDTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLF 212
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT +AC+ L P++SLAYLL+ YC V ++K Q DWR RPL ++YA+TD HYLLY+
Sbjct: 213 DTAKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYI 272
Query: 409 YDCMKLDL-------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVF---NEEGYMNIFRS 458
+C+ +L S K VL S +C Y K + E +I
Sbjct: 273 ANCLIAELRQHDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISR 332
Query: 459 HALLNNQQKYA---------LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
H LN Q + +R L WRD +AR DES YVL + ++ +A +P
Sbjct: 333 H--LNGQGGISSKACDLQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVP 386
>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 892
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 40/366 (10%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP- 228
+PQ FK V DNSY + KL + ++ LEK S HPYE E+ + +
Sbjct: 50 KPQFGFKRVLADNSYSEFKHLKLVDASSSS------LEK----PSNGHPYETEITVLLEN 99
Query: 229 ---KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+ FL+ E +L +SD+ + + TE Q+ +L L ++Q A+D E H+ RS+ G
Sbjct: 100 PQIEFGFLRGE---CSLEMSDSYVWVETES-QLKELAEILAKEQVFAVDTEQHSLRSFLG 155
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+T L+QIST ++D++VDT+ L + + +L V +D NI KVFHGAD+D+ WLQ+DF +YVV
Sbjct: 156 FTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT +AC+ L P++SLAYLL+ C V ++K Q DWR RPL E ++YARTD HYL
Sbjct: 216 NMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYL 275
Query: 406 LYVYDCMKLDL-------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN---- 454
LY+ D + +L S++ + + +L S C Y K + G
Sbjct: 276 LYIADSLTTELKQLATEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSI 335
Query: 455 IFR--------SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
I+R S+ LN ++ +R+L WRD + R DEST YVL + ++ ++ P
Sbjct: 336 IYRHLNGHGDKSNISLNAEE--LVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPT 393
Query: 507 DIQGIF 512
+ I+
Sbjct: 394 TTEEIY 399
>gi|334184634|ref|NP_001189656.1| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 872
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 204/365 (55%), Gaps = 39/365 (10%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP- 228
+PQ FK V DNSY + KL + ++ LEK S HPYE E+ + +
Sbjct: 50 KPQFGFKRVLADNSYSEFKHLKLVDASSSS------LEK----PSNGHPYETEITVLLEN 99
Query: 229 ---KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+ FL+ E +L +SD+ + + TE Q+ +L L ++Q A+D E H+ RS+ G
Sbjct: 100 PQIEFGFLRGE---CSLEMSDSYVWVETES-QLKELAEILAKEQVFAVDTEQHSLRSFLG 155
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+T L+QIST ++D++VDT+ L + + +L V +D NI KVFHGAD+D+ WLQ+DF +YVV
Sbjct: 156 FTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT +AC+ L P++SLAYLL+ C V ++K Q DWR RPL E ++YARTD HYL
Sbjct: 216 NMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYL 275
Query: 406 LYVYDCMKLDL------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN----I 455
LY+ D + +L S++ + + +L S C Y K + G I
Sbjct: 276 LYIADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSII 335
Query: 456 FR--------SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
+R S+ LN ++ +R+L WRD + R DEST YVL + ++ ++ P
Sbjct: 336 YRHLNGHGDKSNISLNAEE--LVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTT 393
Query: 508 IQGIF 512
+ I+
Sbjct: 394 TEEIY 398
>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
Length = 760
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 189/342 (55%), Gaps = 18/342 (5%)
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
Q+ L L +++ A+D E H+ RS+ GYT LMQIST++ DY++DT+ L + + +L V
Sbjct: 21 QLEHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNDDYLIDTIALHDVMGILRPV 80
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
+ +I K+FHGAD+D+ WLQ+DF +YVV MFDT +AC+ L P++SLAYLL+ YC+V +
Sbjct: 81 FANSSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACETLSKPQKSLAYLLEVYCEVTT 140
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA----HGKQNLVLSTFT 432
DKT Q DWR RPL I+YARTD HYLLY+ +C+ +L A A K N
Sbjct: 141 DKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSSDKINFFFEASH 200
Query: 433 NSRNICKLKYEKPVFNEEGYMNI-------FRSHAL---LNNQQKYALRELYKWRDRIAR 482
S +C Y K + G + ++H L +++ K + + WRD +AR
Sbjct: 201 RSNMVCMQLYAKEIECPPGASSAASILSRNLQTHGLDSKKSSEVKDLVWKFCAWRDLMAR 260
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV--LDIHAIILKARLQS 540
DES YVL + + +A S+P+ +FA + ++ L + ++ A ++
Sbjct: 261 MHDESLRYVLSDQAIAALAVSLPKGPTEVFAVISETDLSISSMYPSLSSPSPLVVAHVEE 320
Query: 541 LTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYK 582
L ++ + S++G+ K ++ P S + Y R L K
Sbjct: 321 LCYLLDDITTSMEGIFKSLLEKYKDP--SGLCRLYVQRNLAK 360
>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
Length = 669
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 198/357 (55%), Gaps = 31/357 (8%)
Query: 203 AILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLV 262
+ EKY AIE F HPY E+ P +DF+ PK P +MI + + +LV
Sbjct: 148 TLFFEKY-AIEEFTHPYYEEITRLTP-QDFVLDVPPKINRYRDLEPPIMINNADNLGELV 205
Query: 263 SELKQQ------QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL-EVLNE 315
+++ + EIA+DLE+++ SY G TCL+Q+STR +DYI+D L + L ++L+
Sbjct: 206 LKIQNEVDQNGFSEIAVDLEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSV 265
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 375
V T+ IVKVFHGAD+D++WLQ+DFGLY+V +FDT QA K L + + S +LL YC
Sbjct: 266 VFTNPRIVKVFHGADNDVQWLQRDFGLYIVNLFDTFQASKELLLMQNSFQFLLSEYCKKS 325
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL-------VL 428
+DKT+Q DW RPL + I+YA+ DTHYLLY+YD M+ DL +NL +
Sbjct: 326 TDKTYQTADWTQRPLSDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPNENLNNVPNYYIE 385
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-------LRELYKWRDRIA 481
S S++ Y+KP+ +++ + +LN Q + + +L + R+ +
Sbjct: 386 SVLKRSKDTALKIYKKPLQDQDQSL-----QTILNKQDRRMEAKNFDLMVKLLELREELG 440
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGI---FACCNPVPQTVKEHVLDIHAIILK 535
D++ Y LPN L ++ +S P IQ + + + +KE++ I+L+
Sbjct: 441 IQYDQNPRYFLPNPFLFKLVESKPTSIQELKSQLGGDKYIHEIIKENLWQFLKILLE 497
>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 824
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 160/280 (57%), Gaps = 17/280 (6%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
P + P + + Q+ LV LK ++EI +D+E+H+ RS++G+ L+QIST DY+VD
Sbjct: 60 PGMEGPCLWVQTRSQLEALVDVLKGEKEIGVDIEHHHVRSFRGFIPLIQISTYSTDYLVD 119
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
+ L +D+ +L+ + + I+K+FHGAD+D WLQ+DF +Y+V +FDT +AC L P++
Sbjct: 120 AIALHDDMHLLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLFDTARACDVLGKPQR 179
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH- 421
SLAYLL+ YC V + K +Q DWR RPLP YARTD HYLLY+ CM+ +L A +
Sbjct: 180 SLAYLLQLYCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYIAQCMRANLVQACNT 239
Query: 422 ----GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALR------ 471
L+L S +C+ YEK + + L N A+R
Sbjct: 240 PSLLNDNQLLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASILGRLYNNSNSAMRGEEDAY 299
Query: 472 ------ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+L +WRD +AR +DES +V+ + LL +A+ P
Sbjct: 300 LRRLVQKLVEWRDALARAEDESLRFVMSDAALLAVAKERP 339
>gi|356515280|ref|XP_003526329.1| PREDICTED: uncharacterized protein LOC100791485 [Glycine max]
Length = 873
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 182/302 (60%), Gaps = 19/302 (6%)
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQA--LPLSDTPLMMITEPEQVTQLVSELKQQQEIAID 274
HPYE E+ + K + E + L + D+ + + TE Q+ +LV L +++ A+D
Sbjct: 87 HPYEAEITALL-KNPLPEIELGTEIADLEMKDSYVWVHTE-MQLKELVDVLSEERFFAVD 144
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
E H+ RS+ G+T L+QISTR+KDY+VDT+ L + + +L + + +I KVFHGAD+DI
Sbjct: 145 TEQHSLRSFLGFTALVQISTREKDYLVDTIALHDFMGILRPIFANPSICKVFHGADNDIV 204
Query: 335 WLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394
WLQ+DF +YVV +FDT +AC+ L P++SLAYLL+ YC V ++K Q DWR RPL
Sbjct: 205 WLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEM 264
Query: 395 IQYARTDTHYLLYVYDCMKLDL------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVF- 447
+ YARTD HYLLY+ +C+ +L ++++ K + VL S IC ++K +
Sbjct: 265 VHYARTDAHYLLYIANCLINELKQLDNENSSSDDKFHFVLEASRRSNMICLQLFKKEIEA 324
Query: 448 --NEEGYMNIF----RSHAL--LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 499
E +++F SH ++N+ + +R+L WRD +AR DES YVL + ++
Sbjct: 325 SPGESSALSLFSRRVSSHGFPSISNEAQNIVRQLCTWRDLMARIHDESLKYVLSDQAIVA 384
Query: 500 MA 501
+A
Sbjct: 385 LA 386
>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
Length = 891
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 204/366 (55%), Gaps = 41/366 (11%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYV-- 227
+ Q FK V DNSY + KL + ++L+ S HPYE E+ + +
Sbjct: 50 KSQFGFKRVLADNSYSEFKHLKLDDASSSLEN-----------SSNGHPYETEITVLLEN 98
Query: 228 PKEDF--LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
P+ +F L+ E +L +SD+ + + TE Q+ +L L +++ A+D E H+ RS+ G
Sbjct: 99 PRIEFGFLRGE---YSLEMSDSYVWVETEL-QLKELAEILAKEKVFAVDTEQHSLRSFLG 154
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+T L+QIST +KD++VDT+ L + + +L V ++ NI KVFHGAD+D+ WLQ+DF +YVV
Sbjct: 155 FTALIQISTHEKDFLVDTIVLHDAMSILRPVFSEPNICKVFHGADNDVLWLQRDFHIYVV 214
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT +AC+ L P++SLAYLL+ C V ++K Q DWR RPL E ++YARTD HYL
Sbjct: 215 NMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYL 274
Query: 406 LYVYDCMKLDL-------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN---- 454
LY+ D + +L S++ + + +L S C Y K + G
Sbjct: 275 LYIADSLTAELKQLATEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAAASSI 334
Query: 455 IFR--------SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
I+R S+ LN ++ +R+L WRD + R DEST YVL + ++ +A P
Sbjct: 335 IYRHLNGHGDKSNISLNAEE--LVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLACKQPT 392
Query: 507 DIQGIF 512
+ I+
Sbjct: 393 TNEEIY 398
>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 977
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 185/365 (50%), Gaps = 31/365 (8%)
Query: 170 ERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
++PQ FK V DNS+ Q KL N ++ S HPYE E+ +
Sbjct: 48 QKPQCSFKRVLADNSFSQFKHLKLHGNKNGFDAMS-------GNSSSSHPYEREISALIE 100
Query: 229 KEDFLKCEEPKQALPLSDT--PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
E + L + + + Q+ +L EL Q A+D E H+ RS+ G+
Sbjct: 101 NSGIEFGFEINSIVDLKEMKDDYVWVETESQLKELTDELSNQSVFAVDTEQHSLRSFLGF 160
Query: 287 TCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 346
T L+QIST+ +DY++DT+ L + + +L V + I KVFHG D+DI WLQ+DF +YVV
Sbjct: 161 TALVQISTQKEDYLLDTIALHDAMGILGAVFANPKICKVFHGGDNDILWLQRDFHIYVVN 220
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+FDT +AC+ L P++SLAYLL+ YC V ++K Q DWR RPLP +QYA TD HYLL
Sbjct: 221 LFDTAKACEVLSKPQKSLAYLLETYCGVSTNKLLQREDWRQRPLPAEMLQYALTDAHYLL 280
Query: 407 YVYDCMKLDLSAAAHG--------KQNLVLSTFTNSRNICKLKYEKPV--F-NEEGYMNI 455
Y+ C+ +L + K +L S IC Y K V F + ++
Sbjct: 281 YIASCLIAELKQKDNDNSYSYPDVKLKFILEASRRSNMICMQLYTKEVEEFPGDAAASSL 340
Query: 456 FRSHALLNNQQKYA--------LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
F + LN+Q + +R L WR+ +AR DE +VL + ++ +A + +
Sbjct: 341 FSRY--LNDQGGSSVSCEIQDLVRRLCTWRELMARVHDEGLRFVLSDQAIVSLANKVSTN 398
Query: 508 IQGIF 512
I+
Sbjct: 399 AMEIY 403
>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
Length = 191
Score = 205 bits (522), Expect = 9e-50, Method: Composition-based stats.
Identities = 93/164 (56%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL-EVLN 314
E + +VSEL+ +E+A+DLE+H++RS+QG+TCLMQISTR DY+VDTL LR L L
Sbjct: 7 EALAGMVSELEAAEELAVDLEHHSHRSFQGFTCLMQISTRTTDYVVDTLALRNQLGPALA 66
Query: 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV 374
V D +VKVFHGADSD+ WLQ+DF L++V MFDT QA + L +P LAYLL+ C V
Sbjct: 67 RVFADPRVVKVFHGADSDVDWLQRDFSLFLVNMFDTGQAARVLGLPSFGLAYLLESICGV 126
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418
+DK +Q+ DWR RPL P + YAR DTHYLLYVYD ++ L+A
Sbjct: 127 QADKRYQMADWRVRPLSPPMLHYARCDTHYLLYVYDKLREQLAA 170
>gi|357471299|ref|XP_003605934.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
gi|355506989|gb|AES88131.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
Length = 974
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 191/327 (58%), Gaps = 27/327 (8%)
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
HP++ E+ + + E + L ++D+ + + TE Q+ +LV+ L +++ +D E
Sbjct: 123 HPFQAEITALLQNHQ-PEIELGAEKLEMNDSYVWVDTE-MQLKKLVNVLSKEKFFGVDTE 180
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
H+ RS+ G+T L+QIST+ +DY++DT+ L + +E+L V D +I KVFHGAD+D+ WL
Sbjct: 181 QHSLRSFLGFTGLVQISTQQEDYLIDTIALHDSMEILRPVFADPSICKVFHGADNDVLWL 240
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF-----DWRHRPLP 391
Q+DF +YVV +FDT +AC+ L P++SLAYLL+ YC V+++K Q++ DWR RPL
Sbjct: 241 QRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVNTNKLLQVWPNYREDWRQRPLS 300
Query: 392 EPAIQYARTDTHYLLYVYDCMKLDL------SAAAHGKQNLVLSTFTNSRNICKLKYEKP 445
+ YARTD HYLLY+ +C+ +L ++ + K + VL S IC + K
Sbjct: 301 AEMVHYARTDAHYLLYIANCLIDELKQLDNENSCSDDKFHFVLEASRRSNMICLQLFTKE 360
Query: 446 VF---NEEGYMNIFRSHA------LLNNQQKY--ALRELYKWRDRIARDKDESTGYVLPN 494
+ E ++++ H ++N+ ++ +R+L WRD +AR DES YVL +
Sbjct: 361 IEASPGESAALSLYSRHQSNRASPSISNETQFLSIVRQLCTWRDLMARIHDESLKYVLSD 420
Query: 495 HMLLQMAQSIPRDIQGIFACCNPVPQT 521
++ +A +P I+ N + QT
Sbjct: 421 QAIVALASRLPASNSEIY---NSIVQT 444
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 538 LQSLTKPVEKL---QPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDES 594
LQ TK +E +L + Q + SP + Q +R+L WRD +AR DES
Sbjct: 354 LQLFTKEIEASPGESAALSLYSRHQSNRASPSISNETQFLSIVRQLCTWRDLMARIHDES 413
Query: 595 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 628
YVL + ++ +A +P I+ N + QT
Sbjct: 414 LKYVLSDQAIVALASRLPASNSEIY---NSIVQT 444
>gi|357116782|ref|XP_003560156.1| PREDICTED: uncharacterized protein LOC100837522 [Brachypodium
distachyon]
Length = 909
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 193/380 (50%), Gaps = 28/380 (7%)
Query: 164 KGAVEIERPQLQFK-VKVDNSY-------EQLFEPKLKEKPNALKPLAILLEKYDAIESF 215
+ E E+PQ +FK V DNSY Q +P + +P LE + F
Sbjct: 54 RACEEEEKPQARFKRVFADNSYSPFKHLRRQGADPVADGQRGDAQPQP--LESSQKMHPF 111
Query: 216 CHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
LD F Q P T + Q+ L L ++ A+D
Sbjct: 112 GEEITSLLDNPTGFSTFCNFTLSSQC-PEMSTSYNWVNTVAQLEHLAKLLSDEEVFAVDT 170
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E H+ RS+ GYT L+QIST+ +DY++DT+ L + + +L V + +I K+FHGAD+D+ W
Sbjct: 171 EQHSLRSFLGYTALVQISTQKEDYLIDTIALHDAMGILRPVFSSPSICKIFHGADNDVLW 230
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
LQ+DF +YVV +FDT +AC+ L P++SLAYLL+ YC V +DKT Q DWR RPL +
Sbjct: 231 LQRDFHIYVVNIFDTAKACEVLSKPQKSLAYLLEIYCGVTTDKTMQREDWRVRPLTPEMV 290
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAA----HGKQNLVLSTFTNSRNICKLKYEKPVFNEEG 451
+YAR+D HYLL + +C+ +L A A GK N L S +C Y K + G
Sbjct: 291 EYARSDAHYLLKIANCLASELHAKACDSPDGKTNFFLEASRRSNMVCMQLYAKEIECPPG 350
Query: 452 YMNI-------FRSHAL---LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 501
+ ++H L +++ K +R+ WRD +AR DES Y+L + + +A
Sbjct: 351 ASSAASILSRNLQTHGLDSKKSSEVKDLVRKFCAWRDLMARMHDESLRYILSDQAIASLA 410
Query: 502 QSIPRDIQGIFACCNPVPQT 521
S+P+ G C + +T
Sbjct: 411 VSVPK---GPMEMCTVIAET 427
>gi|357508795|ref|XP_003624686.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
gi|355499701|gb|AES80904.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
Length = 832
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 135/203 (66%), Gaps = 7/203 (3%)
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHG 328
EI +DLE++ YRS+QG TCLMQISTR +D+IVDTLKLR+ + + L +V D KV HG
Sbjct: 311 EITVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHG 370
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
AD DI WLQ+DFG+Y+ MFDT QA + L M R SL +LL+H+C V ++K +Q DWR R
Sbjct: 371 ADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRAR 430
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKL---DLSAAAHGKQNLVLSTFTNSRNICKLKYEKP 445
PLP+ I+Y R DTHYLLY+YD M++ +LS + + +L + S N+C YEK
Sbjct: 431 PLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKD 490
Query: 446 VFNEEGYMNI--FRSHALLNNQQ 466
+ E ++NI R A N QQ
Sbjct: 491 LLTENSFLNIKGLRG-AGFNGQQ 512
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
LY+WRD +AR +DESTGY+LPN ++L +A+ +P
Sbjct: 572 LYEWRDVLARAEDESTGYILPNKVILLIAKHMP 604
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
LY+WRD +AR +DESTGY+LPN ++L +A+ +P
Sbjct: 572 LYEWRDVLARAEDESTGYILPNKVILLIAKHMP 604
>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
Length = 676
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 187/329 (56%), Gaps = 30/329 (9%)
Query: 205 LLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT-PLMMITEPEQVTQLVS 263
EKY+ I+ F HPY YE L + +DF+ + P + D P MMIT + + +LV
Sbjct: 150 FFEKYE-IDEFAHPY-YEEILRLTPQDFV-LDVPSKINRYRDLEPPMMITNADHLGELVL 206
Query: 264 ELKQQ------QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL-EVLNEV 316
+++Q+ EIA+DLE+++ SY G TCL+Q+STR +DYI+D L + L ++L+ +
Sbjct: 207 KIQQEVDQNGFSEIAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPFPLWKQLGDMLSVI 266
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDS 376
+ IVKVFHGA++D++WLQ+DFGLY+V +FDT A K L + + S +LL YC +
Sbjct: 267 FANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDTFHASKELQLMQNSFQFLLSEYCKKST 326
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL-------VLS 429
DKT+Q DW RPLP+ I+YA+ DTHYLLY+YD M+ DL N+ + +
Sbjct: 327 DKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPNDNISNIPNYYLEA 386
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-------LRELYKWRDRIAR 482
S+ Y+KP+ +++ + +LN Q + + L + R+ +
Sbjct: 387 VLKRSKETALKIYKKPLQDQDQSL-----QTILNKQDRRMEAKSFELMVRLLELREELGI 441
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
D++ Y LPN L ++ +S P IQ +
Sbjct: 442 KHDQNPRYFLPNPFLFKIVESKPTTIQEL 470
>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
Length = 949
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 198/402 (49%), Gaps = 43/402 (10%)
Query: 168 EIERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESF------CHPYE 220
E E+PQ +F+ V DNSY + + P+ +A + HP+E
Sbjct: 61 EEEKPQARFRRVVADNSYSAFKHLRRQ----GAGPVGSGHHGSEAQPTSQESSQKVHPFE 116
Query: 221 YELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNY 280
E+ + + P P T + Q+ L L ++ A+D E H+
Sbjct: 117 EEITSLLNNPPDFQNFMPGDRCPEMSTSYNWVETDAQLEDLARLLDDEKAFAVDTEQHSL 176
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
RS+ GYT LMQIST+ DY++DT+ L + + +L V + +I K+FHGAD+D+ WLQ+DF
Sbjct: 177 RSFLGYTALMQISTQKADYLIDTIALHDVMSILRPVFANPSICKIFHGADNDVLWLQRDF 236
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
+YVV MFDT +AC+ L P++SLAYLL+ YC V +DKT Q DWR RPL IQYAR
Sbjct: 237 HIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARC 296
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA 460
D HYLLY+ +C+ +L A + + + +N F +
Sbjct: 297 DAHYLLYIANCLASELHAKTYDASD----------------------SPNDKINFFFEAS 334
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
+N + ++ WRD +AR DES YVL + + +A S+PR G C+ + +
Sbjct: 335 HRSNMD--LVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVPR---GPTEVCSAILE 389
Query: 521 TVKEHVLDIHAI-----ILKARLQSLTKPVEKLQPSLDGMKK 557
T + ++ I+ A + L +E + S+D + K
Sbjct: 390 TETSNSTVYPSLPPPSPIVVAHAEELRYLIEDITVSMDAIFK 431
>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
Length = 949
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 198/402 (49%), Gaps = 43/402 (10%)
Query: 168 EIERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESF------CHPYE 220
E E+PQ +F+ V DNSY + + P+ +A + HP+E
Sbjct: 61 EEEKPQARFRRVVADNSYSAFKHLRRQ----GAGPVGSGHHGSEAQPTSQESSQKVHPFE 116
Query: 221 YELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNY 280
E+ + + P P T + Q+ L L ++ A+D E H+
Sbjct: 117 EEITSLLNNPPDFQNFMPGDRCPEMSTSYNWVETDAQLEDLARLLDDEKAFAVDTEQHSL 176
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
RS+ GYT LMQIST+ DY++DT+ L + + +L V + +I K+FHGAD+D+ WLQ+DF
Sbjct: 177 RSFLGYTALMQISTQKADYLIDTIALHDVMSILRPVFANPSICKIFHGADNDVLWLQRDF 236
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
+YVV MFDT +AC+ L P++SLAYLL+ YC V +DKT Q DWR RPL IQYAR
Sbjct: 237 HIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARC 296
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA 460
D HYLLY+ +C+ +L A + + + +N F +
Sbjct: 297 DAHYLLYIANCLASELHAKTYDASD----------------------SPNDKINFFFEAS 334
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
+N + ++ WRD +AR DES YVL + + +A S+PR G C+ + +
Sbjct: 335 HRSNMD--LVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVPR---GPTEVCSAILE 389
Query: 521 TVKEHVLDIHAI-----ILKARLQSLTKPVEKLQPSLDGMKK 557
T + ++ I+ A + L +E + S+D + K
Sbjct: 390 TETSNSTVYPSLPPPSPIVVAHAEELRYLIEDITVSMDAIFK 431
>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
Length = 1029
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 216/439 (49%), Gaps = 62/439 (14%)
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQEI----------------AIDLEYHNYR 281
PK +PLS+TPL+ I + + + ++ ++ Q E+ AIDLE+H+ +
Sbjct: 352 PKMYIPLSNTPLIYIDDLDGLNSMIIDINNQLELQYSESSEYSSKDPFVLAIDLEHHSMQ 411
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
+++G+ CL+Q+STR DYI+D L E+L LNE+ T+ I+K+FHG+D DI WLQ+DF
Sbjct: 412 TFRGFVCLIQMSTRTCDYIIDPFPLFEELSRLNELTTNPRILKLFHGSDYDIIWLQRDFS 471
Query: 342 LYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
+YVV MFDT QA + L P SL LL YC V+++K +QL DWR RPLP+ I+YAR+
Sbjct: 472 VYVVNMFDTGQAARVLNTPGGYSLGNLLNLYCSVEANKQYQLSDWRERPLPQHLIEYARS 531
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA 460
DTHYL Y+YD MK L + L +S + P + +++ +
Sbjct: 532 DTHYLPYIYDIMKNQLLLLGNKSHGLFISL------------KDPFMD----LSVSDNTN 575
Query: 461 LLNNQQKYALRELYKWRDRIAR-DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
L NQ K E I DK E+ Y + + N P
Sbjct: 576 LFINQNKNITIESNSQLLEIGNFDKSETERYSIDKY--------------------NLDP 615
Query: 520 QTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYAL-- 577
+ + I LK ++ +P++ SL+ + K + + H+S N+ L
Sbjct: 616 SALLTVMHKTRLICLKEYIE---QPIDIWNISLNIISKFSKNLL---HNSINKATITLLV 669
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
L WR+ +AR D S YVL + +L ++ Q P + + A P +K H +
Sbjct: 670 YVLILWRETVARLYDISNSYVLKDGILQRLIQKQPLNWNDLIATFPNNPAQIKRHSDTLL 729
Query: 638 AIILKARLQPLTKPVEKLQ 656
+IL + TK ++++
Sbjct: 730 KLILLVKQHIQTKTEKQIE 748
>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
Length = 957
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 186/396 (46%), Gaps = 90/396 (22%)
Query: 227 VPKEDF-LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE--------------- 270
+P F +K P+ LPLS+TPL I EP + +++ ++ E
Sbjct: 243 IPNAHFNIKYSSPELYLPLSNTPLTFIKEPGDLRRMIDDILNLMESHYSQSSMNEESSPF 302
Query: 271 -IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+AID+E+H+ +SY+G+ L+Q+STR DYI+D L ++++LNE+ + I+KV HG+
Sbjct: 303 LLAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFNEIQMLNELTANPKILKVLHGS 362
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDSDKTFQLFDWRHR 388
D DI WLQ+DF +Y+V MFDT QA + L P SL LL YC +D DK FQL DWR R
Sbjct: 363 DYDIIWLQRDFSVYIVNMFDTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRER 422
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMK---------------LDLSAAAHGKQNLV------ 427
PL I+YAR DTHYLLY+YD MK L A K NL+
Sbjct: 423 PLSNELIEYARGDTHYLLYIYDIMKNLLLLHRHKNTEPPVLASDAFMEVKDNLIILKPDI 482
Query: 428 ---------------------------------LSTFTNSRNIC-KLKYEKPV------- 446
L+ NSR IC K +EKP+
Sbjct: 483 IERMDFGSYHNFLIEGENGSKLVKVTDLDPSALLTVLHNSRQICLKEYFEKPLDVWSLCY 542
Query: 447 -----FNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 501
++ Y S A++ Y L+ WRD IAR D S YVL M++++
Sbjct: 543 GVRTKISKSSYKTPIDS-AIVTLVSYY----LFIWRDSIARLLDVSPSYVLKESMIIKIC 597
Query: 502 QSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
Q P + I +P +K+H I I+ +
Sbjct: 598 QKQPMNSVEILGLYPNIPVNIKKHSDHILNIVTTVK 633
Score = 40.0 bits (92), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI 639
L+ WRD IAR D S YVL M++++ Q P + I +P +K+H I I
Sbjct: 569 LFIWRDSIARLLDVSPSYVLKESMIIKICQKQPMNSVEILGLYPNIPVNIKKHSDHILNI 628
Query: 640 ILKAR 644
+ +
Sbjct: 629 VTTVK 633
>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
Length = 421
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 203/387 (52%), Gaps = 27/387 (6%)
Query: 210 DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ 269
D+ ES HPY++ L+ E + E + L +TPL I + +L+++LK +
Sbjct: 36 DSCES--HPYKHLLNFEPTVEQLSRVENIEAPKTLKETPLCDIDTKTSLEELITDLKAWK 93
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
E+ +D+EY ++ Y+ TCL+QIST DKDYI+D + L+++L LNEV T+ +IVK+FH A
Sbjct: 94 ELGVDVEYSDH-GYKALTCLVQISTPDKDYIIDAIALKDELHALNEVFTNPDIVKIFHSA 152
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
+D+KWLQ+D G++VV +FDT A K L + L LL+ Y V DKT Q D+R RP
Sbjct: 153 VNDLKWLQQDLGVFVVNLFDTQIAMKALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRP 211
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP YAR D+HYL+ Y +K +L A NL+ + + N CK+ Y P +
Sbjct: 212 LPPKFKDYARVDSHYLIGFYHKLKNELIEA-----NLLRAVLDDCNNCCKILY--PKVED 264
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E Y+++ R+ ++ +Q L +L WR +IA+ D++ G VL + + +P D
Sbjct: 265 EAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSA 324
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKA---RLQSLTKPVEKLQPSLDGM-------KKKQ 559
I VKEH+ ++ I+ + R ++ K + G KKK
Sbjct: 325 DIMQISQ--SSHVKEHLDEVMQILSEGNPVRFNEFSRNKRKFNQTGFGRNEPSGSNKKKW 382
Query: 560 QQQVSPPHDSNNQQKYALRELYKWRDR 586
Q+ N Q + LR RDR
Sbjct: 383 NNQIG----KNVQNMFDLRNTLPQRDR 405
>gi|428169598|gb|EKX38530.1| hypothetical protein GUITHDRAFT_59898, partial [Guillardia theta
CCMP2712]
Length = 153
Score = 195 bits (495), Expect = 1e-46, Method: Composition-based stats.
Identities = 84/145 (57%), Positives = 112/145 (77%)
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
+E A+DLE+H+ RS+QG+TCLMQISTR++D+IVDT++LR + +L TD I KVFHG
Sbjct: 9 KEFAVDLEHHSLRSFQGFTCLMQISTREQDFIVDTIELRSCIHLLLPAFTDPKITKVFHG 68
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
ADSD++WLQ+DFGLY+V MFDT QA + L P LAYLL +C+ ++DK +QL DWR R
Sbjct: 69 ADSDVRWLQRDFGLYIVNMFDTGQASRVLEFPSYGLAYLLHRFCEEEADKQYQLADWRVR 128
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMK 413
PL ++YAR DTHYLLY+YD ++
Sbjct: 129 PLTPEMLKYARMDTHYLLYIYDQLR 153
>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 377
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 183/324 (56%), Gaps = 13/324 (4%)
Query: 210 DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ 269
D+ ES HPY++ L+ E + E + L +TPL I + +L+++LK +
Sbjct: 36 DSCES--HPYKHLLNFEPTVEQLSRVENIEAPKTLKETPLCDIDTKTSLEELITDLKAWK 93
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
E+ +D+EY ++ Y+ TCL+QIST DKDYI+D + L+++L LNEV T+ +IVK+FH A
Sbjct: 94 ELGVDVEYSDH-GYKALTCLVQISTPDKDYIIDAIALKDELHALNEVFTNPDIVKIFHSA 152
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
+D+KWLQ+D G++VV +FDT A K L + L LL+ Y V DKT Q D+R RP
Sbjct: 153 VNDLKWLQQDLGVFVVNLFDTQIAMKALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRP 211
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP YAR D+HYL+ Y +K +L A NL+ + + N CK+ Y P +
Sbjct: 212 LPPKFKDYARVDSHYLIGFYHKLKNELIEA-----NLLRAVLDDCNNCCKILY--PKVED 264
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E Y+++ R+ ++ +Q L +L WR +IA+ D++ G VL + + +P D
Sbjct: 265 EAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSA 324
Query: 510 GIFACCNPVPQTVKEHVLDIHAII 533
I VKEH+ ++ I+
Sbjct: 325 DIMQISQ--SSHVKEHLDEVMQIL 346
>gi|195328899|ref|XP_002031149.1| GM25820 [Drosophila sechellia]
gi|194120092|gb|EDW42135.1| GM25820 [Drosophila sechellia]
Length = 355
Score = 192 bits (489), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 176/303 (58%), Gaps = 21/303 (6%)
Query: 43 FPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEAN 102
FP +L ++ P Y + + +V+ L+ ++L +++I + K +E Q +++ E N
Sbjct: 52 FPQGTARALYLSYPGYARVIEDLTQRVVALIGNVLHSKDIKGDIKKRQMEEQFEMVQECN 111
Query: 103 DKLLESINTRIDVMAGTK--TPSVLPSQPKIVKESWN----------KNAKASNVWQEVH 150
D L E I T +D+ AG + T V+ +Q ++ S + + + W
Sbjct: 112 DLLFERITTNLDIKAGLRRNTQQVVEAQVDVMTSSTSIEPAVAAPQTQGTPKAGSWNRTT 171
Query: 151 DNKKK---SANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE 207
++ S F A I RPQ QF+ VDNS + F P+LKEKPN+LKPLA+L E
Sbjct: 172 GTPQRNMVSTRLFT----AKNIIRPQTQFREPVDNSAQNPFVPRLKEKPNSLKPLALLPE 227
Query: 208 KYDA--IESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSEL 265
DA ++S+ HPYE+EL + P + L+ ++P +++T LM++ E++ Q + EL
Sbjct: 228 YDDAGNVQSYLHPYEFELLKFEPPTEQLQKQKPVLPALMAETELMVVDTVEKLKQALEEL 287
Query: 266 KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 325
+Q +IAID+E+H+YR++ G TCL+Q+STR KDYI DTL LR+D+ +LN VLTD +K+
Sbjct: 288 RQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMHILNLVLTDPKKLKI 347
Query: 326 FHG 328
HG
Sbjct: 348 LHG 350
>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 176
Score = 191 bits (486), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/169 (49%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
D L ++ + + +L + L++ +E A+DLE+H+YRS++G+TCLMQISTR++D++VD L
Sbjct: 4 DHALQVVETVDALEELAAHLEECKEFAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLA 63
Query: 306 LREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
LR + + L + D + +KV HGAD+D++WLQKDFG++V +FDT QA + L +P + L
Sbjct: 64 LRSHVRDALGKAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDTGQAARVLELPSKGL 123
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413
AYLL HYC + ++K FQL DWR RPL + ++YAR DTH+LLYV+D +K
Sbjct: 124 AYLLHHYCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRLK 172
>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 191 bits (484), Expect = 2e-45, Method: Composition-based stats.
Identities = 97/219 (44%), Positives = 141/219 (64%), Gaps = 8/219 (3%)
Query: 217 HPYEYELDLYVPKED----FLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
HPYE E+ + + FL+ E +L +SD+ + + TE Q+ +L L ++Q A
Sbjct: 23 HPYETEITVLLENPQIEFGFLRGE---CSLEMSDSYVWVETE-SQLKELAEILAKEQVFA 78
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+D E H+ RS+ G+T L+QIST ++D++VDT+ L + + +L V +D NI KVFHGAD+D
Sbjct: 79 VDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADND 138
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
+ WLQ+DF +YVV MFDT +AC+ L P++SLAYLL+ C V ++K Q DWR RPL E
Sbjct: 139 VIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSE 198
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
++YARTD HYLLY+ D + +L A G+ TF
Sbjct: 199 EMVRYARTDAHYLLYIADSLTTELKQLATGRHLCYGETF 237
>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
Length = 181
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 217 HPYEYELDLYVPKEDFLKC-EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPYE+EL + P FL E LP+S TPL+++ E QL+ +L Q I +DL
Sbjct: 7 HPYEFELKKFSPDSKFLIIKHEIPHFLPVSSTPLIVVDTTEAFEQLLQDLLSQTVIGVDL 66
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E+H+ RSY+G TCLMQIST DYI+DTLKL + L+ LN+V D NIVK+F GADSD+ W
Sbjct: 67 EHHSDRSYRGITCLMQISTDKTDYIIDTLKLWDHLQPLNKVFCDPNIVKIFQGADSDVIW 126
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
LQ+DFG+YVV +FDT QA L ++ L++LL+HYC V DK +QL DWR RPL
Sbjct: 127 LQRDFGIYVVNLFDTFQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
Length = 327
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 157/255 (61%), Gaps = 19/255 (7%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP- 228
+PQ FK V DNSY + KL + ++ LEK S HPYE E+ + +
Sbjct: 50 KPQFGFKRVLADNSYSEFKHLKLVDASSSS------LEK----PSNGHPYETEITVLLEN 99
Query: 229 ---KEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+ FL+ E +L +SD+ + + TE Q+ +L L ++Q A+D E H+ RS+ G
Sbjct: 100 PQIEFGFLRGE---CSLEMSDSYVWVETES-QLKELAEILAKEQVFAVDTEQHSLRSFLG 155
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+T L+QIST ++D++VDT+ L + + +L V +D NI KVFHGAD+D+ WLQ+DF +YVV
Sbjct: 156 FTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT +AC+ L P++SLAYLL+ C V ++K Q DWR RPL E ++YAR D HYL
Sbjct: 216 NMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARXDAHYL 275
Query: 406 LYVYDCMKLDLSAAA 420
LY+ D + +L A
Sbjct: 276 LYIADSLTTELKQLA 290
>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
Length = 181
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 217 HPYEYELDLYVPKEDFLKC-EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPYE+EL + P FL E LP+S TPL+M+ E L+ +L Q I +DL
Sbjct: 7 HPYEFELKKFSPDSKFLIIKHEIPHFLPVSSTPLIMVDTTEAFELLLRDLLSQMVIGVDL 66
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E+H+ RSY+G TCLMQIST DYI+DTLKL + L+ LN+V D NIVK+F GADSD+ W
Sbjct: 67 EHHSDRSYRGITCLMQISTDKTDYIIDTLKLWDHLQPLNKVFCDPNIVKIFQGADSDVIW 126
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
LQ+DFG+YVV +FDT QA L ++ L++LL+HYC V DK +QL DWR RPL
Sbjct: 127 LQRDFGIYVVNLFDTFQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
Length = 181
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 121/175 (69%), Gaps = 1/175 (0%)
Query: 217 HPYEYELDLYVPKEDFLKCE-EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPYE+EL+ + P FL + E + P+S TPL+M+ E L+ +L Q I +DL
Sbjct: 7 HPYEFELNKFTPHPKFLTVQREVPRFKPVSSTPLIMVDTTEAFELLLRDLLSQMVIGVDL 66
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E+H+ RSY+G TCLMQIST DYIVDTL+L + L+ LNEV D IVK+F GADSD+ W
Sbjct: 67 EHHSERSYRGITCLMQISTDKTDYIVDTLQLWDHLQPLNEVFCDPKIVKIFQGADSDVIW 126
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
LQ+DFG+YVV +FDT QA L ++SL++LL+HYC V +K +QL DWR RPL
Sbjct: 127 LQRDFGIYVVNLFDTFQAATLLGFEKKSLSFLLQHYCQVHVNKKYQLEDWRIRPL 181
>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
Length = 181
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 217 HPYEYELDLYVPKEDFLKCE-EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDL 275
HPYE+EL+ + P F + E + P+S TPL+M+ E L+ +L Q I +DL
Sbjct: 7 HPYEFELNKFTPHPKFWTVQREVPRFKPVSSTPLIMVDTTEAFEHLLQDLLSQTVIGVDL 66
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
E+H+ RSY+G TCLMQIST DYIVDTL+L + L+ LNEV D IVK+F GADSD+ W
Sbjct: 67 EHHSDRSYRGITCLMQISTEKTDYIVDTLQLWDHLQPLNEVFCDPTIVKIFQGADSDVIW 126
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
LQ+DFG+YVV +FDT QA L ++ L++LL+HYC V DK +QL DWR RPL
Sbjct: 127 LQRDFGIYVVNLFDTFQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386, partial [Cryptosporidium hominis]
Length = 875
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 227 VPKEDF-LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE--------------- 270
+P F +K P+ LPLS+TPL I EP + +++ ++ E
Sbjct: 243 IPNAHFNIKYSSPELYLPLSNTPLTFIKEPGDLRRMIDDILNLMESHYSQSSMNEESSPF 302
Query: 271 -IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+AID+E+H+ +SY+G+ L+Q+STR DYI+D L ++++LNE+ + I+KV HG+
Sbjct: 303 LLAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFNEIQMLNELTANPKILKVLHGS 362
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDSDKTFQLFDWRHR 388
D DI WLQ+DF +Y+V MFDT QA + L P SL LL YC +D DK FQL DWR R
Sbjct: 363 DYDIIWLQRDFSVYIVNMFDTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRER 422
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMK 413
PL I+YAR DTHYLLY+YD MK
Sbjct: 423 PLSNELIEYARGDTHYLLYIYDIMK 447
Score = 40.0 bits (92), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI 639
L+ WRD IAR D S YVL M++++ Q P + I +P +K+H I I
Sbjct: 569 LFIWRDSIARLLDVSPSYVLKESMIIKICQKQPMNSVEILGLYPNIPVNIKKHSDHILNI 628
Query: 640 ILKAR 644
+ +
Sbjct: 629 VTTVK 633
>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
Length = 201
Score = 185 bits (470), Expect = 9e-44, Method: Composition-based stats.
Identities = 88/192 (45%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
HPY E+ + ++ L E +Q L + P + I E + L L ++ E A+D E
Sbjct: 1 HPYGDEIRALL-EDPVLPLSETEQPLAEMEEPFVWIETKEALEDLAEVLSEESEFAVDTE 59
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
H+ RS+ G+T L+QIST +DY++D + L +++E+L V + I KVFHGADSDI WL
Sbjct: 60 QHSIRSFLGFTALIQISTYKRDYLIDAIALHDEMEILRPVFANAAICKVFHGADSDILWL 119
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+DF +YVV +FDT +AC L P++SLAYLL+ YC++ ++K FQ DWR RPLPE +
Sbjct: 120 QRDFHIYVVNLFDTARACDVLGKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILL 179
Query: 397 YARTDTHYLLYV 408
YARTD H+LLY+
Sbjct: 180 YARTDAHFLLYI 191
>gi|428671950|gb|EKX72865.1| 3'-5' exonuclease domain containing protein [Babesia equi]
Length = 742
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 169/321 (52%), Gaps = 50/321 (15%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAIL------------------------- 205
RPQ FK DN + F+PK +K N ++P +
Sbjct: 195 RPQHNFKDCFDNFSSRFFDPKRYKKCNPIRPQVTISSNKKDPGELKVPTTFNPCIYPDYR 254
Query: 206 -LEKY--------DAIESFCHPYEYELDLYVPKEDFL-------KCEEPKQALPLSDTPL 249
E Y SF HPY EL+ ED K ++D +
Sbjct: 255 YFETYKEPYSYLHSGFPSFQHPYSAELNALNWSEDTTLHSHTGKKITGGGTLFKMTDDTI 314
Query: 250 -------MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
++ + + + ++++ LK+++ IA+D+E+H+ +++G+ CL+Q S+ +D+IVD
Sbjct: 315 YERECKYTLVDDVKGLKKMIATLKKEKIIAVDVEHHSEETFRGFVCLVQFSSSKEDWIVD 374
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-R 361
K+ + +LNEV+TD I+KVFHG+D+DI WLQ+DFG+YVV MFDT A + L +P +
Sbjct: 375 PFKIFGSMNLLNEVMTDPEILKVFHGSDNDIIWLQRDFGVYVVNMFDTKAAAEVLKVPGK 434
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
+SL YLL + C V DK++Q DWR RPLP ++YA DTHYL+ +Y +K +L+
Sbjct: 435 RSLDYLLMNLCGVRIDKSYQTADWRKRPLPPEMLKYACGDTHYLIKLYTILK-NLALGME 493
Query: 422 GKQNLVLSTFTNSRNICKLKY 442
+ ++ N ++IC+ +Y
Sbjct: 494 DGREKIIQIMKNGKHICQRQY 514
>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
Length = 703
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 140/246 (56%), Gaps = 11/246 (4%)
Query: 171 RPQLQFKVKVDNSYEQLFEPKLKEKPNALKPL--AILLEKYDAIES--FCHPYEYELDLY 226
RPQ FK VDN Y F P+L+ K N+ P+ AIL + + + H Y E+ +
Sbjct: 459 RPQDNFKELVDN-YRPRFVPRLRVKHNSELPVPKAILDAQNGVVSTDPLPHAYAEEIRTW 517
Query: 227 VPKEDF---LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D E P LP + LM + E V +++ EL + +E+AIDLE+HN +SY
Sbjct: 518 QEMADAEVDGVVEAPSPQLPNKEAELMWVDTVELVDEMLDELAEAREVAIDLEHHNMQSY 577
Query: 284 QGYTCLMQISTRDKDYIVDTLK--LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
+G+TCL+QI+TR KDYIVD L + + N + +D IVKV HGAD D++WLQ+D
Sbjct: 578 RGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQRDLS 637
Query: 342 LYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
Y+ MFDT QA + L + SL LL YC +DK QL DWR RPL E QYAR
Sbjct: 638 AYLCNMFDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYARD 697
Query: 401 DTHYLL 406
D HYLL
Sbjct: 698 DVHYLL 703
>gi|373433349|emb|CCE67262.1| RRP6 protein, partial [Chironomus tentans]
Length = 133
Score = 183 bits (465), Expect = 4e-43, Method: Composition-based stats.
Identities = 78/120 (65%), Positives = 99/120 (82%)
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
E A+D+E+H YR+Y G TCLMQISTR KDYI+DT+ LRE+L VLNE+ T +I+K+FHG+
Sbjct: 2 EFALDVEHHRYRTYLGITCLMQISTRTKDYIIDTIALREELHVLNEIFTRSSIIKIFHGS 61
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D DI+WLQ+D LYVV MFDTHQA K L + R SLA+LLKHYC++++DK+FQL DWR RP
Sbjct: 62 DCDIEWLQRDLCLYVVNMFDTHQAAKRLGLARLSLAFLLKHYCNIEADKSFQLADWRIRP 121
>gi|449016126|dbj|BAM79528.1| similar to polymyositis-scleroderma overlap syndrome associated
autoantigen [Cyanidioschyzon merolae strain 10D]
Length = 492
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 146/269 (54%), Gaps = 31/269 (11%)
Query: 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE----VLNEVLTDKNIV 323
++ +AIDLE H+YRSYQG+ CL+QIS+ D D ++D L LR L +L +V
Sbjct: 131 KKAVAIDLEAHSYRSYQGFVCLVQISSVDCDAVIDALALRSALADPSGAFIRLLRHPRVV 190
Query: 324 KVFHGADSDIKWLQKDF--GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT-- 379
KV HGADSD+ WLQ+DF +V +FDT +A + L P SLA+L+ Y D D+T
Sbjct: 191 KVMHGADSDVLWLQRDFTPAARIVNLFDTARAAQLLGEPSVSLAHLISCYAR-DEDRTAD 249
Query: 380 ------------------FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SA 418
FQ+ DWR RPLP + YAR DTHYLLY+Y + L +
Sbjct: 250 PASLRNGSRDALASEKRVFQVADWRIRPLPSSMLHYARQDTHYLLYLYRVLSTRLVQETD 309
Query: 419 AAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWR 477
+ N + + S ++ +Y + ++ + R + A+L++ LR+L WR
Sbjct: 310 PNSPETNRLQQLWLKSADVALRRYALQEVAADAHLKVARQYKAMLSDTMLPLLRDLIHWR 369
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPR 506
D+IAR+ DES YV PNH L+ + + PR
Sbjct: 370 DQIAREADESPPYVFPNHFLIALVRETPR 398
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 613
LR+L WRD+IAR+ DES YV PNH L+ + + PR
Sbjct: 362 LRDLIHWRDQIAREADESPPYVFPNHFLIALVRETPR 398
>gi|384247627|gb|EIE21113.1| 3'-5' exonuclease, partial [Coccomyxa subellipsoidea C-169]
Length = 165
Score = 180 bits (456), Expect = 5e-42, Method: Composition-based stats.
Identities = 79/165 (47%), Positives = 117/165 (70%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ E++ ++ ELK Q+IA+DLE+H RSY G TCL+Q+ST DK+Y+VD L L + +
Sbjct: 1 VDSAEKLQRVTEELKGAQQIAVDLEHHALRSYLGITCLLQLSTGDKEYLVDALALHDHMH 60
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHY 371
+L +VL D +VKV HG ++DI WLQ+DF LY+V +FDT +AC+ L +SLA+LL+ Y
Sbjct: 61 LLQDVLEDARVVKVLHGGENDISWLQRDFHLYLVNVFDTEKACQVLGYEERSLAHLLQRY 120
Query: 372 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
C V ++K +Q DWR RPL + + YARTD H+L+Y+ D ++ +L
Sbjct: 121 CGVTANKQYQRADWRVRPLAKELVDYARTDVHFLVYIADVLRSEL 165
>gi|308509326|ref|XP_003116846.1| CRE-CRN-3 protein [Caenorhabditis remanei]
gi|308241760|gb|EFO85712.1| CRE-CRN-3 protein [Caenorhabditis remanei]
Length = 488
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 116/187 (62%), Gaps = 3/187 (1%)
Query: 357 LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
L P+ SLAYL + DV DK +QL DWR RPL I YAR DTHYLLY YD ++ L
Sbjct: 4 LKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQL 63
Query: 417 SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKW 476
N+V ++ ++C Y+KPVF +GY+ + N++Q +AL LYKW
Sbjct: 64 LKQDKKDLNVV---YSECNDLCVRVYKKPVFKPKGYLTDLKLRFTFNSRQDHALTSLYKW 120
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RD +AR +DES +VLPNHMLL +A+ +PRD+ GI+ACCNP+P VK+ I II++A
Sbjct: 121 RDVVARQEDESPQFVLPNHMLLALAEQLPRDVGGIYACCNPLPHFVKKLAGQILKIIVEA 180
Query: 537 RLQSLTK 543
R L K
Sbjct: 181 REVKLEK 187
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 111/213 (52%), Gaps = 41/213 (19%)
Query: 439 KLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK-----DESTGYVLP 493
KLKY P F+ Y+ + +L+ Q + A WR R R+ E T Y+L
Sbjct: 3 KLKY--PKFSL-AYLAFRFADVVLDKQYQLA-----DWRARPLRNAMINYAREDTHYLLY 54
Query: 494 NHMLL--QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPS 551
++ +L Q+ + +D+ +++ CN D+ + K KPV K +
Sbjct: 55 SYDMLREQLLKQDKKDLNVVYSECN-----------DLCVRVYK-------KPVFKPKGY 96
Query: 552 LDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 611
L +K + N++Q +AL LYKWRD +AR +DES +VLPNHMLL +A+ +
Sbjct: 97 LTDLKLR--------FTFNSRQDHALTSLYKWRDVVARQEDESPQFVLPNHMLLALAEQL 148
Query: 612 PRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 644
PRD+ GI+ACCNP+P VK+ I II++AR
Sbjct: 149 PRDVGGIYACCNPLPHFVKKLAGQILKIIVEAR 181
>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
Length = 228
Score = 175 bits (444), Expect = 1e-40, Method: Composition-based stats.
Identities = 86/206 (41%), Positives = 124/206 (60%)
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLE 276
HPYE ++ + + L+ + I Q+ L L + + A+D E
Sbjct: 20 HPYEADIKALIENPESLEDYYSDHQKMSEFFSYVWIETETQLKDLAHTLSKHKVFAVDTE 79
Query: 277 YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWL 336
H+ RS+ G+T L+QISTR++DY+VDT+ L + + VL V D I KVFHGAD+D+ WL
Sbjct: 80 QHSLRSFLGFTALIQISTRNEDYLVDTIALHDVMGVLAPVFADPTICKVFHGADNDVLWL 139
Query: 337 QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 396
Q+DF +YVV +FDT +AC+ L P++SLAYLL+ YC V ++K Q DWR RPL ++
Sbjct: 140 QRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSAEMLE 199
Query: 397 YARTDTHYLLYVYDCMKLDLSAAAHG 422
YA+TD HYLLY+ C+ +L G
Sbjct: 200 YAQTDAHYLLYIAGCLIAELKLQDRG 225
>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
Length = 879
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 156/273 (57%), Gaps = 25/273 (9%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++ E++ +++ LK+ +AID+E+H+ +SY+G+ CL+QI+ D D+++D + +++
Sbjct: 318 LVQTLEELESMITLLKKCSIVAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIFDEM 377
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
LN+V TD I+KV HGA+SDI WLQ+DFG+YVV +FDT +A L + SL+ L++
Sbjct: 378 WRLNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLFDTLKAADVLCLSCGHSLSSLVR 437
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC---------MKLDLSAAA 420
H+ + DK++QL DWR RP+P + YA DTHYLL +Y +K ++
Sbjct: 438 HFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLDLYSALKNTALEQDLKYNIPGMV 497
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS-HALLNNQQKYA---------L 470
N + S+ +C +Y PVFNE I R+ AL N+Q + +
Sbjct: 498 GCFDNHIWRIMLASKKVCLRQYRDPVFNE-----IPRAFQALRKNRQCPSKVDSLSLNMM 552
Query: 471 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
L +R+ AR DES ++ P++ + +A +
Sbjct: 553 LNLISFRNYAARVLDESDSFLFPDYAAVIVAMA 585
>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
Length = 951
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 170/358 (47%), Gaps = 68/358 (18%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPK 229
+PQ FK V DNSY KL E + ++ S HPYE E+ +
Sbjct: 47 KPQYSFKXVLADNSYSAFKHLKLGESXSE-----------TSLHS--HPYEAEISALLEN 93
Query: 230 EDF-LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTC 288
+ L +SD+ + + TE Q+ +L L +Q+ A+D E H+ RS+ G+T
Sbjct: 94 AEIEFSFGTESMDLKISDSYVWVETEL-QLKELADVLSKQRVFAVDTEQHSLRSFLGFTA 152
Query: 289 LMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
L+QIST+++DY+VDT+ L + L+VL V + +I KVFHGAD+D+ WLQ+DF + VV +F
Sbjct: 153 LIQISTQNEDYLVDTIALHDTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIXVVNLF 212
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT + R+ DWR RPL ++YA+TD HYLLY+
Sbjct: 213 DTAK--------RE---------------------DWRQRPLSVEMLEYAQTDAHYLLYI 243
Query: 409 YDCMKLDL-------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVF---NEEGYMNIFRS 458
+C+ +L S K VL S +C Y K + E +I
Sbjct: 244 ANCLIAELRQHDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISR 303
Query: 459 HALLNNQQKYA-----------LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
H LN Q + +R L WRD +AR DES YVL + ++ +A +P
Sbjct: 304 H--LNGQGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVP 359
>gi|403223072|dbj|BAM41203.1| uncharacterized protein TOT_030000466 [Theileria orientalis strain
Shintoku]
Length = 820
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 153/266 (57%), Gaps = 6/266 (2%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD 296
E + L L ++ M+ E + ++ +++ ++ID+E+ + +Y+G CL+Q+ST +
Sbjct: 409 EKSEPLELGESKYKMVLTEEDLKAMIEKIQNNTILSIDVEHWSKNTYRGIVCLIQLSTPE 468
Query: 297 KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF 356
++YIVD + L +LN V TD I+KV HG+D+DI+WLQ+DFG+Y+V MFDT QA K
Sbjct: 469 ENYIVDPFDIFTKLNILNVVTTDPRILKVMHGSDNDIEWLQRDFGVYIVNMFDTRQAAKV 528
Query: 357 LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
L + +SL L+ Y +V +K +QL DW RPL E + YA +D++YL+ +Y MK ++
Sbjct: 529 LNLKEESLMKLIDKYFNVKMNKKYQLADWSKRPLDEEMLNYACSDSNYLIPLYIKMKNEI 588
Query: 417 SAAAHGKQNLVLSTFTNSRNICKLKY-EKPVFNEEGYMNIFRSHALLNNQQKYA----LR 471
+ + GK ++ S+NIC +Y + V ++ I + + + + +
Sbjct: 589 LSTSDGKVKMI-RVMNYSKNICLTQYVDNGVEMYRKFIRITKKNKIERKSMSFVQYNFML 647
Query: 472 ELYKWRDRIARDKDESTGYVLPNHML 497
L ++R+ AR D S V+ ++ L
Sbjct: 648 NLLEFRNYAARKLDVSEQMVIRDYQL 673
>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 311
Score = 159 bits (402), Expect = 7e-36, Method: Composition-based stats.
Identities = 90/197 (45%), Positives = 119/197 (60%), Gaps = 27/197 (13%)
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD----------- 296
P I ++ +L L EIA+DLE H+YRS+ G CL+Q+S RD
Sbjct: 114 PATWIDTVDEWRRLGERLAHVTEIALDLEAHSYRSFAGMVCLLQLSFRDHHYHDKDDHDT 173
Query: 297 --------------KDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
++++DT+ L+ L EVL VLT+ ++VKV HGADSDI WLQ+DFG
Sbjct: 174 PNDNDDTNDNSPTVHNFLIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFG 233
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCD-VDSDKTFQLFDWRHRPLPEPAIQYART 400
LY+V +FDT +A + L PR S AY+L+HY D + +DK+ QL DWR RPLPE QYA
Sbjct: 234 LYIVNLFDTMRAARALKFPRASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQ 293
Query: 401 DTHYLLYVYDCMKLDLS 417
DT YLL +YD M+ DLS
Sbjct: 294 DTAYLLDIYDRMRYDLS 310
>gi|321451818|gb|EFX63353.1| hypothetical protein DAPPUDRAFT_35911 [Daphnia pulex]
Length = 143
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 98/140 (70%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
P++ PL+M+ E L+ +L Q I +DLE+H+YRSY+G TCLMQIST DYI+D
Sbjct: 4 PITSIPLIMVGTKEAFEHLLQDLLSQTVIGVDLEHHSYRSYRGITCLMQISTEKTDYIID 63
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
TLKL + L+ LN+V D NIVK+F GADSD+ WLQ+DFG+Y+V +F T QA L ++
Sbjct: 64 TLKLWDHLQPLNKVFGDPNIVKIFQGADSDVIWLQRDFGIYIVNLFYTLQAASLLGFEKK 123
Query: 363 SLAYLLKHYCDVDSDKTFQL 382
L +LL+HYC V +K +QL
Sbjct: 124 GLPFLLQHYCQVHVNKKYQL 143
>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 149
Score = 157 bits (398), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/142 (50%), Positives = 96/142 (67%), Gaps = 9/142 (6%)
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV-LNEV 316
+ L S L E A+DLE+H+YRS++G+TC++Q+STR++D++VD L LR + L
Sbjct: 8 LADLASHLDGVAEFAVDLEHHSYRSFRGFTCVIQVSTRERDFVVDALALRSKMRAHLARH 67
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL--------AYLL 368
D KV HGAD D++WLQ+DFG+YVV MFDT QA + L +P + L AY L
Sbjct: 68 FEDATKQKVMHGADMDVQWLQRDFGIYVVNMFDTGQAARVLELPSKGLGAFYLTDAAYAL 127
Query: 369 KHYCDVDSDKTFQLFDWRHRPL 390
KH+CDVD+DK +QL DWR RPL
Sbjct: 128 KHFCDVDADKRYQLADWRRRPL 149
>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973195|gb|EED91526.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 181
Score = 157 bits (396), Expect = 4e-35, Method: Composition-based stats.
Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 10/179 (5%)
Query: 248 PLMMITEPEQVTQLVSELK------QQQEIAIDLEYHNYRSYQGYTCLMQIS---TRDKD 298
P + I +++T+L + + + +EIA+DLE H++R++ G+ CL+Q+S + D
Sbjct: 2 PGIWIGNEDEMTELATRINDGEQSGEIREIALDLEAHSHRTFAGFVCLIQLSIHISSGYD 61
Query: 299 YIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL 357
+++D L LR + L +L + NI+KV HGADSDI WLQ+DFG YVV +FDT +A + L
Sbjct: 62 FLIDALSLRHVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRAL 121
Query: 358 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
LA+LL+ Y +D DK QL DWR RPLP+ YA DT YLL +YD ++L+L
Sbjct: 122 KFQSAGLAFLLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLEL 180
>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
Length = 350
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 140/270 (51%), Gaps = 18/270 (6%)
Query: 282 SYQGYTCLMQISTRDKDYIVDTLK--LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKD 339
SY+G+TCL+QI+TR KDYIVD L + + N + +D IVKV HGAD D++WLQ+D
Sbjct: 3 SYRGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQRD 62
Query: 340 FGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
Y+ MFDT QA + L + SL LL YC +DK QL DWR RPL E QYA
Sbjct: 63 LSAYLCNMFDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYA 122
Query: 399 RTDTHYLLYVYDCMKLDLSAAAHG---------KQNLVLSTFTNSRNICKLKYEKP--VF 447
R D HYLLY+YD M+ L + G + + ST S ++ Y+ F
Sbjct: 123 RDDVHYLLYIYDRMRAQLLCSGGGVDDGKVTAYGRKMYKSTINRSCDVALKTYKDADSDF 182
Query: 448 NEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP-- 505
E +++ L+ + L L WRD++ R +D +L + + L++A P
Sbjct: 183 MEHAITLSCKTNTPLSLVGRPMLAALMHWRDKLGRQRDVFPNSILTDRLALRIAMDEPVT 242
Query: 506 --RDIQGIFACCNPVPQTVKEHVLDIHAII 533
+ ++ + V + V++ ++ A++
Sbjct: 243 REQLLRALGGGSGGVARQVRDRADEVLAVL 272
>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
Length = 680
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 246 DTPLMMITEPEQVTQLVS---ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
DT + T + V +L + EL +Q A+D+E+H+ +Y G TCL+Q+ST KDY++D
Sbjct: 110 DTFIHSFTWVDTVPKLAAAAMELYEQDRTALDVEHHSTHTYSGLTCLVQLSTGSKDYLID 169
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
+L LR+D+ +L VL++ I KV HG +D WLQ+DFGL++V +FDT +AC+ L ++
Sbjct: 170 SLALRQDMHLLAPVLSNPRICKVIHGGGNDAVWLQRDFGLFLVNVFDTEKACQVLGYHQR 229
Query: 363 SLAYLLKHYCDVDSDKTF-QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418
SL LL+ +C + +DK+ Q DWR RPL I YAR D +LL + D + +L A
Sbjct: 230 SLGALLQRFCGIQADKSLGQRADWRRRPLSAELIDYARRDVQHLLTIADRLGHELLA 286
>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
Length = 996
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 118/192 (61%), Gaps = 1/192 (0%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I ++ +LK + +++D+E+H+ +Y+G+ CL+Q+ST +++YI+D K+ +
Sbjct: 474 IIDNEADFNSMLDKLKNIRVLSLDVEHHDTETYRGFICLVQLSTPEENYIIDPFKIFGKM 533
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
LN + TD I+K+ HGA +D+ WLQ+DF ++VV +FDT +A K L + QSLA L++
Sbjct: 534 NKLNRLTTDPKILKIMHGASNDVVWLQRDFNIFVVNLFDTREAAKVLNLAEQSLAKLIQK 593
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
Y ++ +K FQL DW RPL + YA D+HYL+ +Y +K ++ + G+ ++
Sbjct: 594 YFNIKLNKRFQLSDWSKRPLDAEMLDYACCDSHYLIPLYSALKDEILSKEDGRVK-IIQV 652
Query: 431 FTNSRNICKLKY 442
N R C +Y
Sbjct: 653 MNNGRETCLKQY 664
>gi|300121240|emb|CBK21621.2| unnamed protein product [Blastocystis hominis]
Length = 500
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 190/406 (46%), Gaps = 33/406 (8%)
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALK----------PLAILLEKYD--------- 210
E+PQ +F +VD + + F PKL+EK NA K P + Y
Sbjct: 93 EKPQDRFGDRVD-ALDLNFAPKLREKHNARKEWVYEDISRIPGIFFQDDYQRELGIDPRT 151
Query: 211 -AIESFCHPYEYEL-DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ 268
I + +PY YE+ +L P + + L DT + I E++ L++ LK
Sbjct: 152 QLISIYRNPYSYEIHNLEFPDWEVRGDLGVPPSCSLDDTVVEFIDTEEKIMDLIARLKSF 211
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
+ I++ + H+YRSY GY ++ IS+ + DY +D + LN++ T+ +IVKV
Sbjct: 212 RCISVSVIQHSYRSYLGYCSMIMISSGEIDYAIDAIATHNSCWKLNDLFTNPSIVKVMFN 271
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
A + WLQ+DFG+++V +FD A K L + S + +L + + + F+ DWR R
Sbjct: 272 AGDQLLWLQRDFGVFMVNLFDVQMALKLLDEKQTSFSDVLMNRMNEYINMRFRRADWRTR 331
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV----------LSTFTNSRNIC 438
PL +++AR H LY+ + L + N V + T +C
Sbjct: 332 PLTAGMLRFARQTAHSTLYLSSMVIEQLQNESEKHINRVGDGRVGDGQIVETLAACNELC 391
Query: 439 KLKYEKPVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHML 497
Y KPV E G I + QK LY WRD +AR+ DES YVLP L
Sbjct: 392 LETYHKPVQTYETGESTIAELGQIFQPVQKMLFLSLYYWRDVVARELDESVQYVLPLLPL 451
Query: 498 LQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
L++A ++P+ + + +P+ T ++ + + +I+ R + L +
Sbjct: 452 LKVAHAVPKTKEELRRLLSPLSATAEQRLDRLFSIVESCRSEKLVE 497
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
QK LY WRD +AR+ DES YVLP LL++A ++P+ + + +P+ T ++
Sbjct: 420 QKMLFLSLYYWRDVVARELDESVQYVLPLLPLLKVAHAVPKTKEELRRLLSPLSATAEQR 479
Query: 633 VLDIHAIILKARLQPLTK 650
+ + +I+ R + L +
Sbjct: 480 LDRLFSIVESCRSEKLVE 497
>gi|404491882|ref|YP_006715988.1| ribonuclease D [Pelobacter carbinolicus DSM 2380]
gi|77544021|gb|ABA87583.1| ribonuclease D, putative [Pelobacter carbinolicus DSM 2380]
Length = 375
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 136/264 (51%), Gaps = 12/264 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++ + + +L EL+ + IA+DLE + SYQ CL+QIST + +VD L + EDL
Sbjct: 6 ILVDDVSIARLAQELRDEAVIAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAV-EDL 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
L VL D I K+FH AD DI+ L +DF + V G+FDT AC+ L R LA +L
Sbjct: 65 AALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLFDTMIACQMLGEKRVGLADVLAK 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
Y DV+ DK +Q DW RPL E I YA DT +L + + ++ L G+ +
Sbjct: 125 YLDVELDKRYQRADWSKRPLEEGMILYAMEDTCHLHRLTEILEGRLR--DMGRLSWAEEE 182
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
F + + + P+F + LL +Q L +L +WRD A +D
Sbjct: 183 FALLQKVRHSENNGPLFMR------VKGAGLLERKQLAVLEQLLQWRDEEACRRDRPAFK 236
Query: 491 VLPNHMLLQMAQSIP---RDIQGI 511
V+ N LL +AQ +P R+ +GI
Sbjct: 237 VVGNKTLLGLAQIMPGSLREAKGI 260
>gi|50508632|dbj|BAD31028.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
gi|50509503|dbj|BAD31184.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
Length = 1031
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 127/247 (51%), Gaps = 32/247 (12%)
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 375
LT I +FHGAD+D+ WLQ+DF +YVV MFDT +AC+ L P++SLAYLL+ YC V
Sbjct: 294 ALTAWMIYMIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVT 353
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 435
+DKT Q DWR RPL IQYAR D HYLLY+ +C+ +L A + +
Sbjct: 354 TDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAKTYDASD---------- 403
Query: 436 NICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNH 495
+ +N F + +N + ++ WRD +AR DES YVL +
Sbjct: 404 ------------SPNDKINFFFEASHRSNMD--LVWKICAWRDLMARMHDESLRYVLSDQ 449
Query: 496 MLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI-----ILKARLQSLTKPVEKLQP 550
+ +A S+PR G C+ + +T + ++ I+ A + L +E +
Sbjct: 450 AIASLAVSVPR---GPTEVCSAILETETSNSTVYPSLPPPSPIVVAHAEELRYLIEDITV 506
Query: 551 SLDGMKK 557
S+D + K
Sbjct: 507 SMDAIFK 513
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 168 EIERPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESF------CHPYE 220
E E+PQ +F+ V DNSY + + P+ +A + HP+E
Sbjct: 61 EEEKPQARFRRVVADNSYSAFKHLRRQ----GAGPVGSGHHGSEAQPTSQESSQKVHPFE 116
Query: 221 YELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNY 280
E+ + + P P T + Q+ L L ++ A+D E H+
Sbjct: 117 EEITSLLNNPPDFQNFMPGDRCPEMSTSYNWVETDAQLEDLARLLDDEKAFAVDTEQHSL 176
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNI 322
RS+ GYT LMQIST+ DY++DT+ L + + +L V + +I
Sbjct: 177 RSFLGYTALMQISTQKADYLIDTIALHDVMSILRPVFANPSI 218
>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
Length = 790
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 119/201 (59%), Gaps = 10/201 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I ++ +LK + +++D+E+H+ +Y+G+ CL+Q+ST ++YI+D K+ +
Sbjct: 479 LIDNESDFNAMLDKLKNSRILSMDVEHHDTETYRGFICLLQLSTPQENYIIDPFKIFGKM 538
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
LN + TD I+K+ HGA +D+ WLQ+DF ++VV +FDT +A L +P QSLA L++
Sbjct: 539 NKLNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLNLPEQSLAKLVQK 598
Query: 371 YCDVDSDKTFQLFDWRH---------RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
Y ++ +K FQ+ +W RPL + + YA D+HYL+ +Y+ +K ++ +
Sbjct: 599 YFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEILSKED 658
Query: 422 GKQNLVLSTFTNSRNICKLKY 442
G+ ++ N R C +Y
Sbjct: 659 GRVK-IIQVMNNGRETCLKQY 678
>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
Length = 390
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 174/378 (46%), Gaps = 41/378 (10%)
Query: 245 SDTPLMMITEPEQ-VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
+++P I E ++ + LV +L ++ +A DLE + Y CL+Q+S + ++D
Sbjct: 15 TNSPAKGIIETQKDLNLLVEQLSRENILAFDLEADSLHHYTEKVCLIQVSNLSQTALIDP 74
Query: 304 LKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
L DL L VL D+ I KVFHGAD D++ L +DFGL V MFDT AC+FL
Sbjct: 75 LA-PVDLSPLAPVLADRGIRKVFHGADYDMRSLYRDFGLEVCNMFDTMIACQFLGEKEVG 133
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
LA LK V+ +K +Q DW RP I+YA+ DT L+ +Y ++L+ A G+
Sbjct: 134 LAAALKKRFGVELNKKYQKADWSKRPFSAEMIEYAKMDTALLIRLY--LQLEEELRAKGR 191
Query: 424 -------QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKW 476
LV SR+ +P+F F+ A L + L EL +
Sbjct: 192 LEWVEEESELVSCVRAASRD------HEPLFIR------FKGAAKLKPRALAVLEELLRM 239
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RD AR KD +L N L ++A+ PR + A N +P ++ + ILK
Sbjct: 240 RDEKARKKDVPPFRILGNEPLRELAELQPRTL----ADLNGIPGLTQKLIETFGREILKV 295
Query: 537 RLQSLTKPVEKLQ--PSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDES 594
+ PV +L PS M + + Q+ L+ L +WR+ A +
Sbjct: 296 VAKGAAIPVARLPHFPSTARMIRDRDQEAR------------LKRLKEWREAKAVELGLG 343
Query: 595 TGYVLPNHMLLQMAQSIP 612
G + N +L +A + P
Sbjct: 344 VGIIANNSLLEALADTAP 361
>gi|414886884|tpg|DAA62898.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 194
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 89/141 (63%), Gaps = 4/141 (2%)
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
+ +L V + +I K+FHGAD+DI WLQ+DF +YVV MFDT +AC+ L P++SLAYLL+
Sbjct: 1 MGILRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDTAKACEILLKPQKSLAYLLE 60
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA----HGKQN 425
YC+V +DKT Q DWR RPL I+YARTD HYLLY+ +C+ +L A A K N
Sbjct: 61 VYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSSDKIN 120
Query: 426 LVLSTFTNSRNICKLKYEKPV 446
S +C Y K +
Sbjct: 121 FFFEASHRSNMVCMQLYSKEI 141
>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
Length = 295
Score = 137 bits (345), Expect = 3e-29, Method: Composition-based stats.
Identities = 81/264 (30%), Positives = 143/264 (54%), Gaps = 7/264 (2%)
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P+++I +P ++ LV +L + +A+D E +++ +Y CL+QIS+ ++DYI+D L L+
Sbjct: 3 PVVVIEKPSELDALVRQLSTARHLAVDTESNSFYAYFDRVCLIQISSPERDYIIDPLSLK 62
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
DL VL + + I KV H A +D+ L++DF G+FDT ACK L + L+ +
Sbjct: 63 -DLSVLGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACKLLGYKQLGLSKI 121
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
L+ + V +K +Q +DW RPL + YAR DTHYL+ + + DL + + L
Sbjct: 122 LETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHMLAADLQS-----RELW 176
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ + + F+ G++ I + + L+ K L+ LY +R++ AR +D +
Sbjct: 177 AEACEAFEKASEQQVPEKTFHPRGFLQINGARS-LDAAGKSILKALYMFREKEARRRDRA 235
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGI 511
++ N LL++A + P + I
Sbjct: 236 PFRIMSNEALLRLADARPDSVDEI 259
>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
Length = 382
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 176/371 (47%), Gaps = 29/371 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT+ ++ ++ + ++E+A+DLE + Y+ CL+QISTR + +++D L L+ DL
Sbjct: 13 MITDGGRLAEVAGSINSEREVAVDLEMDSLHHYREKVCLIQISTRTESWLIDPLALK-DL 71
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
L L +++I+ V HGAD DI+ L +D G+ V +FDT A + L + LA LLK
Sbjct: 72 SPLAAPLGNRDILIVMHGADYDIRSLHRDHGIEVTNLFDTMIASRLLGITEFGLAALLKA 131
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
++ +K +Q DW RPL YA DT LL +YD ++ +L ++ +
Sbjct: 132 RFGIELNKKYQKADWSKRPLSPEMRAYAVADTADLLRLYDMLRDELL-----EKGRLAWL 186
Query: 431 FTNSRNICKLKY---EKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
R +C+ + E P+F R AL L EL + RD AR+ D
Sbjct: 187 EEECRLVCQARVSEKEGPLFLACKGAGKLRGRAL------AVLEELLQLRDSQARELDRP 240
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEK 547
V+ LL++A+ PR + + P ++ + +L A +L P E+
Sbjct: 241 PFKVISGDTLLEIAEKKPRSLAELSFIKGMTPGQIQR----LGERVLSAVADALVLPEER 296
Query: 548 LQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQM 607
L P +++++ P D ++ ++ L WR +R G + PN +L +
Sbjct: 297 L-PRFPRLQREE------PVDGTKER---IKCLKSWRQGESRRLGLEPGVIAPNWLLEGI 346
Query: 608 AQSIPRDIQGI 618
A + P I +
Sbjct: 347 ADANPASIAAL 357
>gi|32564304|ref|NP_871964.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
gi|26985796|emb|CAD59140.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
Length = 594
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 117/203 (57%), Gaps = 13/203 (6%)
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNAL-KPLAILLE------KYDAIESFC--- 216
V +E+PQ + + DNS + F KL K +A+ K I+L + D I +
Sbjct: 185 VVLEKPQKTYNISSDNS-QAPFSSKLTVKHHAIEKRTGIVLHDDDESGRRDWISAETETE 243
Query: 217 --HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAID 274
HPY E+ + E LK E + L DTPL MI E++ L L +E A+D
Sbjct: 244 EEHPYIAEILHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEFAVD 303
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIK 334
LE+H RSY G TCL+QISTRD+D+I+D + + + +LNE + I+KVFHG+DSD+
Sbjct: 304 LEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVGMLNEPFANPRILKVFHGSDSDVL 363
Query: 335 WLQKDFGLYVVGMFDTHQACKFL 357
WLQ+D+G++VV +FDT+ K L
Sbjct: 364 WLQRDYGVHVVNLFDTYVKVKKL 386
>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
Length = 388
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 182/377 (48%), Gaps = 24/377 (6%)
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
D +++ + L L+ Q+ IA+DLE + YQ CL+QI++ +YIVD L
Sbjct: 12 DPDFVLVDNDNALADLTQSLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPL- 70
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
D++ L +L + I K+FHGAD D++ L +DFG+ + +FDT A +FL P+ LA
Sbjct: 71 CDCDVKALAPILENDEIQKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGEPQTGLA 130
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
LL+ V +K +Q +W RPLP + YA DT +LL + + +K +L K
Sbjct: 131 PLLESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKELVE----KDR 186
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNI-FRSHALLNNQQKYALRELYKWRDRIARDK 484
L F L + +P+ +G + + FR L+ + L + RD +A+
Sbjct: 187 L----FWVEEECEILTHARPMPPNDGPLFLRFRGAGKLDPRSLQVLENILHVRDDLAKKW 242
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+ VL N +L+MAQ P + +G+ + P+ K + H +I +A + P
Sbjct: 243 NRPLFKVLGNTPILEMAQKRPLNTKGLVSLHGFSPKQAK---MFGHELI-RAIKAGKSVP 298
Query: 545 VEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHML 604
EKL PS K+ PP + ++ + L WR+++ + + VL N +
Sbjct: 299 DEKL-PSYPRKKR-------PPLNPKAPKRAKV--LKDWREKMGEELGVESSVVLTNAQI 348
Query: 605 LQMAQSIPRDIQGIFAC 621
MA + PR I+ + C
Sbjct: 349 QAMASNKPRSIRELDEC 365
>gi|403371484|gb|EJY85623.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 1077
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 14/186 (7%)
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQE----IAIDLEYHNYRSYQGYTCLMQIS 293
KQ PL TP I +Q+ + E+K++ +++D+EYHN + CL+QIS
Sbjct: 820 AKQIKPLQYTPFQWIDSQQQLEASIKEIKEELSHCNLLSVDIEYHNLAKHTCIVCLIQIS 879
Query: 294 TRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT-- 350
T KDY++D LK +E + + + E+ D +IVK+FHG DSDI+ L D ++VV +FDT
Sbjct: 880 TYSKDYVIDVLKTKEFVAQYIQEIFVDPSIVKIFHGCDSDIQILASDLDIFVVNLFDTAR 939
Query: 351 -HQACKFLP------MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
+QA LP + SL L + + DK FQ+ DWR RPLP+ + YAR+D+H
Sbjct: 940 AYQAIFKLPENAPKHVDLTSLESLCDKFLGIQLDKFFQVSDWRIRPLPQGMMDYARSDSH 999
Query: 404 YLLYVY 409
+L+ +Y
Sbjct: 1000 FLIPLY 1005
>gi|406962736|gb|EKD89001.1| hypothetical protein ACD_34C00239G0001 [uncultured bacterium]
Length = 380
Score = 133 bits (334), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 9/279 (3%)
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P + + + +T+ L+ Q IA+D E ++ SYQ CL+QIS+ + D++ D +
Sbjct: 8 PAVWVNSSQGLTEAFQALESQSRIAVDTESNSLFSYQEKVCLIQISSPETDFVFDPFEF- 66
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
DL +L + + K+FH ++ D+ L++D+ + +FDT A + L P+ L L
Sbjct: 67 SDLSLLGSLFQNPKQEKIFHASEYDLICLKRDYHFKFINIFDTMIASRILGAPQVGLGSL 126
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
L++Y D++ DK +Q +W RPLP + YAR DT+YL + D ++ +LS HG +L
Sbjct: 127 LQNYFDINLDKKYQRANWGLRPLPPEMLDYARLDTYYLFKLRDRLESELS--NHGLLDLA 184
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRS-HALLNNQQKYALRELYKWRDRIARDKDE 486
F N+ CK N+E + + S HA + +Q L+EL +RD AR D
Sbjct: 185 QEDFVNA---CKAAGHSNGNNQEAHWKLAGSGHA--DPRQVTILKELCTYRDEQARKADL 239
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
VL N ML++++ P + + + + VK H
Sbjct: 240 PHFKVLSNDMLVEVSLHRPATLDELSLVPHFSEKLVKRH 278
>gi|383761955|ref|YP_005440937.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381382223|dbj|BAL99039.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 395
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 175/379 (46%), Gaps = 31/379 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK------DYIVDTL 304
+I + +LV L+ Q A+D E ++ SYQG CL+QIST D++VD L
Sbjct: 11 LIYTTSSLRRLVDYLRGQPRFALDTESNSLYSYQGKVCLIQISTYATGKEEILDFLVDPL 70
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
+L+ DL L E+L D I V H AD+DI L + +G +FDT A + L + L
Sbjct: 71 RLK-DLSPLGELLVDPAIEVVMHAADNDILMLYRSYGFRFGRVFDTQLAARILGWKQVGL 129
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
A +L+ + + S+K Q DW RPL I YA+ DTHYLL + D + +L ++
Sbjct: 130 AAILEKHFGIVSNKRMQRTDWGKRPLTPEQIAYAQMDTHYLLPLRDRLAEELRRKGRWEE 189
Query: 425 NL-VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
L +T T+S ++ E+ + R+ + + L L++WR++ A+
Sbjct: 190 ALDAFATLTSSDPATRMPDERTFWQ-------MRAVRTVPQECLGVLEALWRWREQKAQS 242
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
D V+ + L+++A++ P + + P V+ ++ +I R +
Sbjct: 243 LDRPPFKVVNDATLIELAKTQPLTLDALKETPGLSPLQVRRFGEELLQVIHAGRQRPTPT 302
Query: 544 PVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKY-ALRELYKWRDRIARDKDESTGYVLPNH 602
P P +G + P D Q +Y ALR +WR +A+ + VLPN
Sbjct: 303 P-----PDDEGRPE-------PMLDEAVQARYNALR---RWRTEVAQQRGVDADIVLPNS 347
Query: 603 MLLQMAQSIPRDIQGIFAC 621
LL +A P + + A
Sbjct: 348 ALLAIATLNPATLDALAAL 366
>gi|404498237|ref|YP_006722343.1| ribonuclease D [Geobacter metallireducens GS-15]
gi|418065969|ref|ZP_12703338.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
gi|78195834|gb|ABB33601.1| ribonuclease D, putative [Geobacter metallireducens GS-15]
gi|373561476|gb|EHP87711.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
Length = 382
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 179/386 (46%), Gaps = 36/386 (9%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
+P+ +IT P+ V +L L ++ +A DLE + YQ CL+Q + IV
Sbjct: 1 MPVQPVSPEIITTPDGVRRLADRLSREPYVACDLEADSMHHYQEKVCLIQFTVPGLAAIV 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L + DL L V + +I KVFHGAD DI+ L +DFG+ V +FDT AC+FL
Sbjct: 61 DPLAV-ADLAPLAPVFANPSIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQFLGERE 119
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
LA +L+ V+ DK +Q DW RPL I+YA DT L+ + C +L+
Sbjct: 120 FGLAAVLRKRFGVELDKQYQRADWSRRPLTAGMIEYAAKDTTLLIEL--CGRLEAELREK 177
Query: 422 GKQNLV---LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRD 478
G+ V + R + + +P+F F+ + + ++ L E+ +RD
Sbjct: 178 GRIGWVEEECALLARVR-VAQRSDGEPMFLR------FKGASRMASRSLAVLEEILCFRD 230
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVPQTVKEHVLDIHAIILK 535
R A+ D VL + ++A+ PR ++ GI V + E I++
Sbjct: 231 RRAQQMDVPPFKVLGTETVRELAEKKPRSLAELTGITGITERVVERCGEG-------IVR 283
Query: 536 ARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDEST 595
A + L P + L ++++++V ++ ++ L WR+ AR
Sbjct: 284 AVEKGLAVP----EQELPFFPREERRKV------GGDEERRIKALKGWREDKARRFAVEP 333
Query: 596 GYVLPNHMLLQMAQSIPR---DIQGI 618
G++ N +L Q+A PR +++GI
Sbjct: 334 GFLANNALLEQIALVFPRSEVELEGI 359
>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
Length = 294
Score = 130 bits (327), Expect = 3e-27, Method: Composition-based stats.
Identities = 85/283 (30%), Positives = 148/283 (52%), Gaps = 12/283 (4%)
Query: 243 PLSDTPL---MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDY 299
P+S P + +++P+ +T+L+ L ++ +A+D E +++ Y+ CL+Q+STR +D+
Sbjct: 4 PMSAAPRPSPVFVSDPDALTRLLDALAGERVLALDTESNSFHVYRERVCLLQLSTRTQDF 63
Query: 300 IVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM 359
+VD + + D+ L E+L D V V HGAD D++ L +++G + +FDT A + L
Sbjct: 64 VVDPISV--DVRPLGEILCDGREV-VLHGADYDVRCLHREYGWRIPRLFDTMIAARRLGR 120
Query: 360 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
P L+ L++ + V K FQ DW RPL + YA DTH+LL ++D + +L A
Sbjct: 121 PGLGLSALVESHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGEL--A 178
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
A G + + S+ I + + VF+ EG+ + + L+ K LR L+ R+
Sbjct: 179 ARGALD---EAWKESQRIASVVARERVFDPEGWRRV-KGARELDAPGKAVLRALWIAREE 234
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
AR D VL +L++A+ P + + A P +
Sbjct: 235 RARASDRPPFKVLGEPAMLEIARRRPATREALAAIPGVTPSVL 277
>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
Length = 409
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 179/403 (44%), Gaps = 36/403 (8%)
Query: 223 LDLYVPKEDFLKCEEP----KQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH 278
+DL+ P +C KQ +I + + + +LV L + +A DLE
Sbjct: 6 VDLFSPSASIFRCGTADFLQKQTNKYQQESTDIIEDQQALNRLVERLNTETTLAFDLEAD 65
Query: 279 NYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK 338
+ Y CL+Q+ST + ++D L DL L +L + + KVFHGAD D++ L +
Sbjct: 66 SLHHYTEKVCLIQVSTNSETALIDPLA-PLDLSPLAPILANPAVRKVFHGADYDMRSLYR 124
Query: 339 DFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYA 398
DFG V +FDT A +FL LA LK V+ DK +Q DW RP I+YA
Sbjct: 125 DFGFEVRNLFDTMIASQFLGEKEVGLAAALKKRFGVELDKKYQKADWSKRPFSPQMIEYA 184
Query: 399 RTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS 458
DT L+ +Y ++L+ A G+ L+ I NE ++ F+
Sbjct: 185 MKDTSLLIKLY--LQLEDELRAKGR----LAWVEEESEIVSCVRAASRDNEPLFLR-FKG 237
Query: 459 HALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACC 515
A L + L +L +RD AR +D +L N L ++A+ +PR D+ GI
Sbjct: 238 AAKLKPRSLAVLEKLLLFRDERARKRDVPPFRILGNEPLRELAELLPRTAADLTGIPGIS 297
Query: 516 NPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL--QPSLDGMKKKQQQQVSPPHDSNNQQ 573
+ T +L++ A Q L+ P EKL P++ + K + Q
Sbjct: 298 QKLIDTYGREILNVVA-------QGLSIPAEKLPHYPTVQRVIK------------DRYQ 338
Query: 574 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 616
+ L+ L +WR+ S G + N +L ++++ P ++
Sbjct: 339 EERLKRLKEWREGKGAALGLSVGIIANNSLLEALSEAAPDSLE 381
>gi|21397264|gb|AAM51828.1|AC105730_2 Putative nucleolar protein [Oryza sativa Japonica Group]
gi|22773226|gb|AAN06832.1| Putative nucleolar protein [Oryza sativa Japonica Group]
Length = 523
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 162/372 (43%), Gaps = 98/372 (26%)
Query: 169 IERPQLQFKVKVDN---SYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDL 225
I RPQ + ++V+N ++ ++ + ++ + PL L P E +D
Sbjct: 80 IPRPQDVYAIRVNNYNVPFDHVWLERTEDGSRPIHPLEKL------------PMEQFIDR 127
Query: 226 YVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
VP+ EP + L DTP ++ + + L +LK E A+DLE++ YRS+QG
Sbjct: 128 NVPES------EPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQG 181
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
TCLMQISTR +D++VDTLKLR + + L E D KV HGAD DI WLQ+DF +YV
Sbjct: 182 LTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYV 241
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
+FDT Q K ++ QL++ + TDT Y
Sbjct: 242 CNLFDTGQVQK------------------RSNEICLQLYE-----------KELLTDTSY 272
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNN 464
L++Y + DL A KQ V+ R+
Sbjct: 273 -LHIYGLQEHDLDA----KQLAVVYALHQWRD---------------------------- 299
Query: 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
Y RE+ DESTGYVLPN L+++A+ +P D + V E
Sbjct: 300 ---YIAREV-----------DESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDE 345
Query: 525 HVLDIHAIILKA 536
++ + II A
Sbjct: 346 NLDQVVGIIWNA 357
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 626
HD + +Q + L++WRD IAR+ DESTGYVLPN L+++A+ +P D +
Sbjct: 281 HDLDAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKY 340
Query: 627 QTVKEHVLDIHAIILKA 643
V E++ + II A
Sbjct: 341 PFVDENLDQVVGIIWNA 357
>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
Length = 381
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 172/375 (45%), Gaps = 40/375 (10%)
Query: 248 PLMMITEPE---QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
PL+ T E Q+ QL +EL + E+A+DLE + Y+ CL+Q+S R ++VD L
Sbjct: 2 PLLRYTVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAGTWLVDPL 61
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
+L DL L +L + V HG D DI+ L +DFG+ V MFDT A +F L
Sbjct: 62 RL-SDLSPLRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDTMVAAQFTGATEFGL 120
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
A LL+ + ++ DK FQ DW RPL YA DT +LL + D + L G++
Sbjct: 121 AALLREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELADRLHARLEQL--GRR 178
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF---RSHALLNNQQKYALRELYKWRDRIA 481
V C L V E+G +F + L + L L ++RD+ A
Sbjct: 179 EWVAEE-------CALLVGNRV-AEKGNGPLFLNCKGAGKLKPRNLAILEALLQFRDQQA 230
Query: 482 RDKDESTGYVLPNHMLLQMAQSIP---RDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
R+ D V+P LL++A+ +P RD+ GI + E +L + L
Sbjct: 231 READRPAFKVIPAEALLKIAELVPAAVRDMNGIAGLTPRLLGRYGEQLLTVVRQGLAVAE 290
Query: 539 QSLTK-PVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L + P + +P+ G+K + + L +WR+ I+ ++G
Sbjct: 291 ADLPRFPRGRGEPN-PGIKAR------------------ITRLKQWREGISSRMGLASGL 331
Query: 598 VLPNHMLLQMAQSIP 612
+ PN +L ++A+ P
Sbjct: 332 LAPNWLLERIAEQQP 346
>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
Length = 380
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 172/379 (45%), Gaps = 39/379 (10%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ + P + ++++ L ++IA+D E + +YQ CL+Q S DY+VD L +
Sbjct: 10 IWVATPTALRRMMNHLLACEQIAVDTESNGLHAYQEQICLIQFSVPGADYLVDPLA-SVN 68
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L LNE+ ++ I KVFH A+ DI L++DFG +FDT A + L LA LL+
Sbjct: 69 LSGLNEIFSNPGIEKVFHAAEYDILCLKRDFGFTFTHLFDTMIAARILGRSEVGLAALLE 128
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ V DK +Q +W RPLP + YAR DTHYL+ + + + +L A G L
Sbjct: 129 EHFGVTLDKRYQRANWARRPLPPAMLNYARLDTHYLIDLRNHLAKEL--AERGLTALAEE 186
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNN---QQKYALRELYKWRDRIARDKDE 486
F +C E P E ++ A + QQ L+ L ++R++ AR +
Sbjct: 187 DFL---RVC----ETPAAPAESRPPMWWDVAGTTDLPPQQASLLQALVEFREQQARFANL 239
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
VL N +L+Q+A++ P ++ + ++ + L I + + R T+P
Sbjct: 240 PPFRVLSNAVLIQIAEANPMTLEDLAEVQGLSYAHLERYGLGIMEALRRGR----TRPAP 295
Query: 547 KLQPSLDGMKKKQQQQVSPPHDS--NNQQKYALRELYKWRDRIARDKDESTGYVLPN--- 601
+ PP S N+Q L L +WR R + +LP
Sbjct: 296 Q-----------------PPGYSRPNHQILKRLEMLKRWRKDAGRRMGVESDVILPRDTM 338
Query: 602 HMLLQMAQSIPRDIQGIFA 620
H L Q + P DI+ + A
Sbjct: 339 HALAQCDVTTPEDIERLMA 357
>gi|408418343|ref|YP_006759757.1| ribonuclease D Rnd [Desulfobacula toluolica Tol2]
gi|405105556|emb|CCK79053.1| Rnd: ribonuclease D [Desulfobacula toluolica Tol2]
Length = 377
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 141/269 (52%), Gaps = 22/269 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
I ++ + +L +++ IA+DLE + ++ CL+QI++ + ++VD ++++
Sbjct: 5 FIESESELNHVCDDLLKEKIIAVDLEADSMHCFKEKICLIQIASAKEAFLVDPFEIKKIS 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
LN VL + +++KVFHG+D DI+ L +D+ + V +FDT AC+FL + + LA LLK
Sbjct: 65 SFLN-VLENNDVMKVFHGSDFDIRSLDRDYHVQVNNLFDTEIACRFLGIKERGLAALLKR 123
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG--KQNLVL 428
DVD+DK FQ DW RPL + I+Y+ D YL+ + D + HG K+ L
Sbjct: 124 NFDVDADKKFQKVDWAQRPLKQAMIEYSVGDVAYLVELQDII--------HGRLKEKKRL 175
Query: 429 STFTNSRNI-CKLKYEK----PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
+ I +++YE P+F + F+ ++N+ L L + R IA+
Sbjct: 176 AWAKEEFEIQAQVRYENNHTFPLFKK------FKGAGKMDNRSLAVLENLLQMRLSIAQK 229
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
KD+ V+ N L+ MA P I I
Sbjct: 230 KDQPLFKVISNPSLMTMACEKPLTIDRIL 258
>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
Length = 377
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 172/366 (46%), Gaps = 28/366 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I E + LK ++ +A DLE + ++ CL+Q++ + ++VD L + +DL
Sbjct: 6 LIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLSI-DDL 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
VL V D I KVFHG+D DI+ L +DF ++V +FDT AC+FL + ++SLA LL+
Sbjct: 65 SVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFLGIQKRSLAALLEK 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQNLV 427
+ D+ DK FQ DW RPL + I Y+ D YLL + D +K L A ++
Sbjct: 125 HFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGRLAWAEEEFE 184
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
L T N +P+F + F+ + + L L ++R +A +KD+
Sbjct: 185 LQTRVRHDN----NGNEPLFLK------FKGSGKMGRRSLAVLESLLQFRKTLAVEKDKP 234
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEK 547
++ + + +MA + P + + P+ +D++ A + K EK
Sbjct: 235 LFKIISSEAIAKMAANQPETLHSLKELRALSPRQ-----MDMYGTQCVAAIVGALKTPEK 289
Query: 548 LQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQM 607
P +K+ +++P Q +R L + R + G++L N M+ +
Sbjct: 290 ELPV---YPRKRLPEMAP------QVPERIRSLKEMRITASNKTRIEPGFLLNNTMITAI 340
Query: 608 AQSIPR 613
A + PR
Sbjct: 341 AIASPR 346
>gi|189238221|ref|XP_970385.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 336
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 46/283 (16%)
Query: 210 DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ 269
D+ ES HPY++ L+ E + E + L +TPL I + +L+++LK +
Sbjct: 92 DSCES--HPYKHLLNFEPTVEQLSRVENIEAPKTLKETPLCDIDTKTSLEKLITDLKAWK 149
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
E+ +D+EY ++ Y+ TCL+QIST DKDYI+D + L+++L LNEV T K+
Sbjct: 150 ELGVDVEYSDH-GYKALTCLVQISTPDKDYIIDAIALKDELHALNEVFTKKS-------- 200
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
L + L LL+ Y V DKT Q D+R RP
Sbjct: 201 ---------------------------LGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRP 232
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP YAR D+HYL+ Y +K +L A NL+ + + N CK+ Y P +
Sbjct: 233 LPPKFKDYARVDSHYLIGFYHKLKNELIEA-----NLLRAVLDDCNNCCKILY--PKVED 285
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVL 492
E Y+++ R+ ++ +Q L +L WR +IA+ D++ G VL
Sbjct: 286 EAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVL 328
>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
Length = 288
Score = 126 bits (317), Expect = 6e-26, Method: Composition-based stats.
Identities = 80/273 (29%), Positives = 143/273 (52%), Gaps = 9/273 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ +++P+ +++L+ L ++ +A+D E +++ Y+ CL+Q+STR +D++VD + + D
Sbjct: 10 VFVSDPDALSRLLDALAGERVLALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISV--D 67
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
+ L E+L D V V HGAD D++ L +++G + +FDT A + L P L+ L++
Sbjct: 68 VRPLGEILCDGREV-VLHGADYDVRCLHREYGWRIPRLFDTMIAARRLGRPGLGLSALVE 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ V K FQ DW RPL + YA DTH+LL ++D + +L+ + +
Sbjct: 127 AHFGVRLSKAFQRSDWGRRPLTPDQLAYASLDTHFLLPLFDLLTGELAT-----RGALEE 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ S+ I + + VF+ EG+ I S L+ K LR L+ R+ AR D
Sbjct: 182 AWKESQRIASVVARERVFDPEGWRRIKGSRE-LDAPGKAVLRALWIAREDRARASDRPPF 240
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
VL +L++A+ P + + A P +
Sbjct: 241 KVLGEPAMLEIARRRPATREALAAIPGVTPSVL 273
>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
Length = 288
Score = 126 bits (316), Expect = 7e-26, Method: Composition-based stats.
Identities = 80/273 (29%), Positives = 143/273 (52%), Gaps = 9/273 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ +++P+ +++L+ L ++ +A+D E +++ Y+ CL+Q+STR +D++VD + + D
Sbjct: 10 VFVSDPDALSRLLDALAGERVLALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISV--D 67
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
+ L E+L D V V HGAD D++ L +++G + +FDT A + L P L+ L++
Sbjct: 68 VRPLGEILCDGREV-VLHGADYDVRCLHREYGWRIPRLFDTMIAARRLGRPGLGLSALVE 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ V K FQ DW RPL + YA DTH+LL ++D + +L+ + +
Sbjct: 127 AHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGELAT-----RGALEE 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ S+ I + + VF+ EG+ I S L+ K LR L+ R+ AR D
Sbjct: 182 AWKESQRIASVVARERVFDPEGWRRIKGSRE-LDAPGKAVLRALWIAREDRARASDRPPF 240
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
VL +L++A+ P + + A P +
Sbjct: 241 KVLGEPAMLEIARRRPATREALAAIPGVTPSVL 273
>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
Length = 296
Score = 125 bits (313), Expect = 2e-25, Method: Composition-based stats.
Identities = 83/261 (31%), Positives = 133/261 (50%), Gaps = 10/261 (3%)
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
TPL+ + + +++LV E++ + +A+D E +++ Y+ CL+Q+STR DYIVD L +
Sbjct: 9 TPLL-VADSSSLSRLVEEVRAEPVVALDTESNSFHVYRERICLLQVSTRAADYIVDPLAV 67
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
D L EVL D V HGAD D++ L++++G ++ +FDT A + L L+
Sbjct: 68 --DPSPLGEVLCDGR-ETVLHGADYDVRCLRREYGWHLPRLFDTMAAARRLGRQGLGLSA 124
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
L++ + V KTFQ DW RPL + YA DTHYLL + D + +L +Q
Sbjct: 125 LVEAHFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQ-- 182
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
I + + VF+ EG+ + R L+ LR +Y R+ A D
Sbjct: 183 ---ARREFERIAAVVARERVFDPEGFRRL-RGARELDPAGLAVLRAIYVAREERASGLDR 238
Query: 487 STGYVLPNHMLLQMAQSIPRD 507
VL ++ +A+ +PRD
Sbjct: 239 PPFKVLGEDAMIAIARRLPRD 259
>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
Length = 382
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 21/275 (7%)
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P + P + Q+V L++ +A+DLE + + CL+QI +++D L L
Sbjct: 8 PFTFVNTPSGLAQVVHRLERVPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLAL- 66
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
DL L D ++KV HGAD D++ L +DFG+ + G+FD+ A +FL + L +
Sbjct: 67 SDLSSLKPFFADPGVIKVLHGADYDVRSLYRDFGITITGLFDSEIASRFLGVQSTGLNDV 126
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ V DK + DW RPLPE + YA D YL+ +Y ++ +L G+ V
Sbjct: 127 VNRRFGVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQ--QMGRAEWV 184
Query: 428 LSTFTNSRNICKLKY----EKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
+ +++Y + P+F F+ L+ + L L R ++AR
Sbjct: 185 AE---ECELLSRVRYANGEDTPLFVR------FKGAGRLSRRTLAVLEALLVARQKMARK 235
Query: 484 KDESTGYVLPNHMLLQMAQSIPR-----DIQGIFA 513
KD V+ N LL++AQ PR + G+F+
Sbjct: 236 KDRPPFKVMGNDALLRLAQERPRNRKALEAMGVFS 270
>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
Length = 381
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 131/259 (50%), Gaps = 14/259 (5%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ + E +T +V L+++ IA+DLE + YQ CL+Q ST K+ +VD L ++ D
Sbjct: 9 LHVESGEALTSIVGILQKETAIAVDLEADSMFHYQEKVCLLQFSTPSKNILVDPLAVK-D 67
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L L + I K+FHGAD DI+ L +DF + V +FDT A +FL + LA LL+
Sbjct: 68 LSPLAPIFKSFGICKIFHGADYDIRSLYRDFKIEVNALFDTQIAARFLGLTDIGLASLLQ 127
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH---GKQNL 426
++ K +Q DW RPLP P +QYA DT +L+ + ++ +L ++
Sbjct: 128 GKLNITLKKKYQKKDWSQRPLPAPMLQYAVHDTCHLIPLAQNLREELVKTGRLPFVEEEC 187
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
L T S + ++P+F + F L+ + L + ++RDR AR +D
Sbjct: 188 QLQTTVRSAS----PGDEPLFLK------FNGAGKLDRRSLAVLEAILQYRDRTARRRDV 237
Query: 487 STGYVLPNHMLLQMAQSIP 505
V+ N ++ +A+ P
Sbjct: 238 PLFKVMGNAQVMALAKQKP 256
>gi|409910998|ref|YP_006889463.1| ribonuclease D [Geobacter sulfurreducens KN400]
gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
Length = 381
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 170/379 (44%), Gaps = 32/379 (8%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
+PL +IT + V +L L ++ +A DLE + YQ CL+Q + IV
Sbjct: 1 MPLLPVSPEIITTVDGVRRLADRLGREPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIV 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L D+ L + + I KVFHGAD DI+ L +DFG+ V +FDT AC+ L
Sbjct: 61 DPLAA-PDISPLAPLFANAAIRKVFHGADYDIRSLHRDFGMEVNNLFDTMIACQLLGERE 119
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
LA L+ V+ DK +Q DW RPL I+YA DT L+ + C +L A
Sbjct: 120 FGLAAQLRKRFGVELDKQYQRADWSRRPLTPGMIEYAVKDTTLLIEL--CWQLATDLEAK 177
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVF--NEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
G++ V C+L V +E + F+ + ++ + L EL +RD
Sbjct: 178 GRRGWV-------EEECELLSRVRVAERGDEPFFLRFKGASRMDGRTLAVLEELLAFRDG 230
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
AR D VL + ++A+ PR ++QGI + V E IL+A
Sbjct: 231 RARQVDVPPFKVLGTDTVRELAERRPRLPEELQGITGLTDKVAARHGEG-------ILRA 283
Query: 537 RLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTG 596
+ P ++L P+ ++++ ++ ++ L+ L +WR A G
Sbjct: 284 VERGCAVPAQQL-PAYPREERRKMER---------GEEERLKRLKEWRAEQAGRLGIEPG 333
Query: 597 YVLPNHMLLQMAQSIPRDI 615
Y+ N +L +A + PR +
Sbjct: 334 YIANNALLELVAVNAPRTM 352
>gi|403368461|gb|EJY84065.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 547
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 35/347 (10%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLREDL 310
I P ++ +++ L + + +DLE H +SY G+ CL+QI+T D + Y++D LKLRE++
Sbjct: 85 IDTPNKLQEILRSLYKYSVLGVDLENHQTKSYHGFLCLIQITTPDYQTYLIDCLKLREEI 144
Query: 311 EV-LNEVLTDKNIVKVFHGA-DSDIKWLQKDFGLYVVGMFDTHQAC-KFLPMPRQSLAYL 367
+ L + +K+FHG +SDI WLQ+DFG V +FDT ++ K R SL +L
Sbjct: 145 KTYLGAIFESHTTLKIFHGCVNSDITWLQRDFGFATVNVFDTQESYKKLFKGQRVSLLHL 204
Query: 368 LKHYC------DVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
YC + FQ DW RPL + YA D+HYL+Y+ ++ +
Sbjct: 205 WTTYCKDRVKISKEQKNMFQKADWSMRPLSSEMLNYAAHDSHYLIYIAKRLQKNFENQNQ 264
Query: 422 GKQNLVLSTFTNSRNI-CKLKYEKP---VFN-EEGYMNIFR---------SHALLNNQQK 467
++ L+ N NI C + KP FN +E Y FR S L +
Sbjct: 265 LQE---LADICNQVNIQCVSQLFKPRDITFNKDEEYKTPFRKILDGFDPESEEFLLTE-- 319
Query: 468 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVL 527
Y + +Y R+ +A+ D + + + ML +++ P + Q N + + K+
Sbjct: 320 YIFKRIYNLREHLAQIIDVTPSEICDDSMLYVLSKKRPIEYQ---QTRNMLDEQGKKTTT 376
Query: 528 DIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQK 574
+II ++ + + ++ +D MK+ + P H N+QQ+
Sbjct: 377 YFRSIIENLNIE-IEQAIDDFPKEIDSMKEYYSK--LPNHGWNSQQE 420
>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella novicida U112]
gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella novicida FTE]
gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
Length = 364
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTL ED
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTL---ED 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
Length = 377
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 22/264 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ + + +LV L ++ +A DLE + Y CL+Q+S+ +D ++D L D+
Sbjct: 15 LVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSSASEDRLIDPLA-PIDV 73
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
+VL + + I K+FHGAD D++ L +DFG+ VV +FDT A +FL LA LLK
Sbjct: 74 KVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESEFGLAALLKK 133
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-----AAAHGKQN 425
V+ DK +Q DW RP + + YA DT L+ +Y ++ +L A +
Sbjct: 134 RFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEESE 193
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNI--FRSHALLNNQQKYALRELYKWRDRIARD 483
LV + SR EG + F+ + + ++ L EL ++RD AR
Sbjct: 194 LVAGVRSPSR--------------EGELMCLRFKGASKMKPRELAVLEELLRFRDEKARL 239
Query: 484 KDESTGYVLPNHMLLQMAQSIPRD 507
D +L N +L ++A+ PR+
Sbjct: 240 ADVPPFRILSNDLLRELAEKQPRN 263
>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
Length = 377
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 42/369 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ + + +LV L ++ +A DLE + Y CL+Q+S+ ++ ++D L D+
Sbjct: 15 LVTDQKTLDELVERLSKESVLAFDLEADSLHHYTEKVCLIQVSSESENRLIDPLA-PIDV 73
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
VL + + I K+FHGAD D++ L +DFG+ VV +FDT A +FL LA LLK
Sbjct: 74 RVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESEFGLAALLKK 133
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH-----GKQN 425
V+ DK +Q DW RP + ++YA DT L+ +Y ++ +L A +
Sbjct: 134 RFGVELDKRYQKADWSKRPFSQEMLEYAMKDTSLLIELYRQLEAELLAKGRLAWVEEESE 193
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL--LNNQQKYALRELYKWRDRIARD 483
LV + SR EG + R + ++ L EL K+RD AR
Sbjct: 194 LVAGVRSPSR--------------EGELMCLRFKGANKMKPRELAVLEELLKFRDEKARI 239
Query: 484 KDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
D +L N +L ++A+ PR ++ GI + + + + +L+A
Sbjct: 240 ADVPPFRILSNDLLRELAEKQPRSNFELVGIHTMSSKLIERLGRG-------LLQAIANG 292
Query: 541 LTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLP 600
L P E+L P + ++ P D +K ++ L WR+ + G V
Sbjct: 293 LAVPQERL-PQVQSSRR-------PVLDRLLDEK--VKRLKIWREAKSAQLGLGVGLVAN 342
Query: 601 NHMLLQMAQ 609
N +L +A+
Sbjct: 343 NTLLEALAE 351
>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
Length = 377
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 170/369 (46%), Gaps = 42/369 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ + + +LV L ++ +A DLE + Y CL+Q+S+ +D ++D L D+
Sbjct: 15 LVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSSTSEDRLIDPLA-PIDV 73
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
+VL + + I K+FHGAD D++ L +DFG+ VV +FDT A +FL LA LLK
Sbjct: 74 KVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESEFGLAALLKK 133
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-----AAAHGKQN 425
V+ DK +Q DW RP + + YA DT L+ +Y ++ +L A +
Sbjct: 134 RFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEESE 193
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNI--FRSHALLNNQQKYALRELYKWRDRIARD 483
LV + SR EG + F+ + + ++ L EL ++RD AR
Sbjct: 194 LVAGVRSPSR--------------EGELMCLRFKGASKMKPRELAVLEELLRFRDEKARL 239
Query: 484 KDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
D +L N +L ++A+ PR ++ GI + + + + +L+A
Sbjct: 240 ADVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLIERLGRG-------LLQAVANG 292
Query: 541 LTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLP 600
L P +KL G + P D ++ ++ L WR+ + G V
Sbjct: 293 LAVPQDKLPQVHSGRR--------PVLDRLQDER--VKRLKVWREAKSAQLGLGIGLVAN 342
Query: 601 NHMLLQMAQ 609
N +L +A+
Sbjct: 343 NTLLEALAE 351
>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
Length = 364
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
Length = 364
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
gi|423051113|ref|YP_007009547.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|421951835|gb|AFX71084.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
Length = 363
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|385792618|ref|YP_005825594.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
Length = 364
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 140/270 (51%), Gaps = 27/270 (10%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LLK D++ +K Q DWR+RPL + + YA D YL+ + + + +Q L
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYL----------QQQL 167
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWRDRI 480
V S + + ++ +K FN +I HA + N QK+ + + +WR+ I
Sbjct: 168 VKSEYQDFFEQELIEVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWRETI 222
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
A++K+ ++ N L +A P+ +
Sbjct: 223 AQEKNIPVRFIFNNKTLYTIAHINPKSLNS 252
>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|422939063|ref|YP_007012210.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|407294214|gb|AFT93120.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
Length = 364
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
Length = 364
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|254370381|ref|ZP_04986386.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717133|ref|YP_005305469.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|379725737|ref|YP_005317923.1| ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|385794536|ref|YP_005830942.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|421755410|ref|ZP_16192356.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|377827186|gb|AFB80434.1| Ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|377828810|gb|AFB78889.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|409088212|gb|EKM88289.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
Length = 364
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752196|ref|ZP_16189228.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|421754061|ref|ZP_16191044.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|421757785|ref|ZP_16194655.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|421759628|ref|ZP_16196457.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|424674949|ref|ZP_18111861.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409085560|gb|EKM85698.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|409085718|gb|EKM85850.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|409090457|gb|EKM90474.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|409091730|gb|EKM91720.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|417434204|gb|EKT89163.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
Length = 364
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M++ +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIVNTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|146173426|ref|XP_001018834.2| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|146144882|gb|EAR98589.2| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 634
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 131/269 (48%), Gaps = 10/269 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ I ++ +++ L+ I D+ ++ YRS+ G+ C ++IST D+DYI+D L LR +
Sbjct: 93 LYIKTDQEFNRMLELLRNAGVICWDVHFNTYRSFYGFVCFLEISTIDQDYIIDCLSLRNE 152
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG-LYVVGMFDTHQACKFLPMPRQSLAYLL 368
+ L E+ DK IVK+ I WL +DFG L +V D K L +P ++YL
Sbjct: 153 IHRLKEIFLDKQIVKITLDLQEKINWLYRDFGILNIVNSIDLSLYLKELNLPS-IISYLC 211
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ K Q FD+R RPL I Y R +++ L + + ++ + K +
Sbjct: 212 GTLLNYPFQKILQNFDYRKRPLSLNEINYLRAFSYFPLRILSILTNNILSIEKSK---LE 268
Query: 429 STFTNSR--NICKLKYEKPVFNE---EGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
F S+ + LK + + E E + +F N QQ+Y LR++ KWR + A+
Sbjct: 269 ELFNKSQLASCLSLKQLENLLQENLIEKHFEMFCIDRNYNEQQQYFLRKILKWRIQRAKL 328
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
+DES Y+ P ++ + P Q +
Sbjct: 329 EDESVEYIFPACIIEKFISVYPTSSQQVL 357
>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
Length = 364
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 142/273 (52%), Gaps = 33/273 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + Y+ D YL+ + + ++ L+ + + +
Sbjct: 118 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYSIKDVEYLIQLKEYLQQQLAKSEYQDFFE 177
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 178 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 219
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ IA++K+ ++ N +L +A P+ +
Sbjct: 220 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNS 252
>gi|379057275|ref|ZP_09847801.1| 3'-5' exonuclease [Serinicoccus profundi MCCC 1A05965]
Length = 421
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 134/288 (46%), Gaps = 21/288 (7%)
Query: 228 PKEDFLKCEEPKQALP-LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY 286
P DF + E P + +P + DTP + E + L + +A+D E + Y
Sbjct: 10 PGADFERLEAPPEGVPAVVDTPSGL---EEALAALAGGVGP---VAVDAERASGYRYGQK 63
Query: 287 TCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
L+Q+ +++D + EDL L+E L + V H A DI L + GL
Sbjct: 64 AYLVQLRREGAGTWLIDPVPF-EDLRALDEALASTSWV--LHAATQDIPCL-AELGLRPR 119
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT + +PR L+ +L++Y V K DW RPLPEP ++YA D L
Sbjct: 120 ALFDTELGARLAGLPRVGLSAVLEYYLGVTLAKEHSAVDWSTRPLPEPWLRYAALDVELL 179
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE--EGYMNIFRSHALLN 463
+ + D M+ DL GK + F +C ++ P +E E + H L
Sbjct: 180 VELRDRMERDLR--EQGKLDWAEQEFA---ALC--EFTGPAGSEEPEAWRRTTGVHRLRK 232
Query: 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ALREL++ RD IA+++D G VLP+ LL +AQ +PR +
Sbjct: 233 RRSLAALRELWQTRDTIAQERDVPPGRVLPDGTLLDLAQRMPRQAAAL 280
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 618
ALREL++ RD IA+++D G VLP+ LL +AQ +PR +
Sbjct: 238 ALRELWQTRDTIAQERDVPPGRVLPDGTLLDLAQRMPRQAAAL 280
>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
Length = 399
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 142/274 (51%), Gaps = 33/274 (12%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+Q++T ++ +++DTLK D
Sbjct: 27 MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK---D 83
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
LE L E+ DK+I+K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 84 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKT 143
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---K 423
LLK D++ +K Q DWR+RPL + + YA D YL+ + + ++ L+ + + +
Sbjct: 144 LLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFE 203
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWR 477
Q L+ + +K FN +I HA + N QK+ + + +WR
Sbjct: 204 QELI-------------EVQKTQFN-----SIENIHAKIGNIQKFDEKTQRNAILIAQWR 245
Query: 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ IA++K+ ++ N +L +A P+ +
Sbjct: 246 ETIAQEKNIPVRFIFNNKILYTIAHINPKSLNSF 279
>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
Length = 381
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 163/383 (42%), Gaps = 40/383 (10%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
+PL +IT + V +L L + +A DLE + YQ CL+Q + IV
Sbjct: 1 MPLQPASPEIITTVDGVRRLADRLGSEPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIV 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L D+ L + + I KVFHGAD DI+ L +DFG+ V +FDT AC+ L
Sbjct: 61 DPLAA-PDISPLAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLGERE 119
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
LA L+ V+ DK +Q DW RPL I+YA DT L+ +Y + +L
Sbjct: 120 FGLAAQLRKRFGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELE--EK 177
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVF--NEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
G++ V C+L V +E + F+ + ++ + L EL +RD
Sbjct: 178 GRRGWVEEE-------CELLSRVRVAERGDEPFFLRFKGASRMDGRTLAVLEELLLFRDG 230
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
AR D VL + ++A+ PR ++QGI + V E +L
Sbjct: 231 RARQFDVPPFKVLGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGIL--------- 281
Query: 537 RLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYA----LRELYKWRDRIARDKD 592
+ VE+ G QQ + P + + + L+ L +WR A
Sbjct: 282 ------RAVER------GCAVPAQQLPAYPREERRKMERGEEDRLKRLKEWRTEEAGRLG 329
Query: 593 ESTGYVLPNHMLLQMAQSIPRDI 615
GY+ N +L +A PR +
Sbjct: 330 IEPGYIANNALLELVAVKAPRTM 352
>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
Length = 382
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 143/290 (49%), Gaps = 8/290 (2%)
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P+ +I + + +K++++I DLE + + CL+Q++T++ +++DT+KL+
Sbjct: 8 PVTIIETLSGLKDALVNIKEEKKIGFDLEADSMHHFPEKVCLLQVATKNCIFVIDTIKLK 67
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
E L +L + D I K+FHGAD D++ L +DF + + +FD+ A +FL + L +
Sbjct: 68 E-LSLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLFDSELASRFLGVKETGLEAV 126
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
++H +V +K F DW RPL + + YA D YL+ +Y+ ++ +L+ +
Sbjct: 127 IRHRFNVYLEKKFTKRDWSKRPLIDDMLHYAADDVRYLVPLYEILEKELNDIGR-----L 181
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C ++ + N E F+ L + L L +R IA KD
Sbjct: 182 FWVKEECDILCSVRPDAN--NGEPLFLKFKGAGKLKPENLAVLEALLGFRKEIALKKDVP 239
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
++ N LL++A++ P + I + + + D+ +II KA+
Sbjct: 240 FFKIIGNAALLKLAETRPDSLNKIINTNVLSKRQMDMYGKDLLSIIHKAK 289
>gi|359689033|ref|ZP_09259034.1| ribonuclease D [Leptospira licerasiae serovar Varillal str.
MMD0835]
Length = 372
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 13/242 (5%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q ++ID E Y +Y CL+QIS++ K+YI D ++L +DL L + + NI+K
Sbjct: 6 LSQSDCLSIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRL-DDLNGLGPLFENPNILK 64
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L++DFG + + DT + + L + + SL YL++HY V K Q +
Sbjct: 65 IFHSASDDIKALKRDFGFKFINIADTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSN 124
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV---LSTFTNSRNICKLK 441
W RPL + +QYA DT YL ++ M +L GK+ L+ +S F
Sbjct: 125 WEKRPLEKSQLQYAALDTVYLESIWTKMGEEL-----GKRKLLDEAVSEFAKIAEEEPEP 179
Query: 442 YEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 501
+E N E + N+ L + ++ AL + +RD A+ +++ V N +L++
Sbjct: 180 FEGFSINLEKFPNVLE----LGSDERRALHDTLGFRDEKAKKLNKAPFRVWNNDKVLELV 235
Query: 502 QS 503
+S
Sbjct: 236 KS 237
>gi|389581646|ref|ZP_10171673.1| ribonuclease D [Desulfobacter postgatei 2ac9]
gi|389403281|gb|EIM65503.1| ribonuclease D [Desulfobacter postgatei 2ac9]
Length = 404
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 22/269 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
IT + + Q+ +L+ + I +DLE + + CL+QI+ ++ +++D L D
Sbjct: 33 FITTDKDLAQVCLKLEPCEIIGVDLEADSMHCFSEKICLIQIAGPNQAWLLDPF-LINDF 91
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
+ +L + I+KVFHG+D D++ L ++ + + +FDT AC+FL + + L LLK
Sbjct: 92 LPFSRILENPEIIKVFHGSDFDVRSLDRELSVEIENLFDTEIACRFLNIKERGLGALLKS 151
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL---SAAAHGKQNLV 427
+ D+D DK +Q DW RPL E I Y+ D L+ ++D +K L A ++
Sbjct: 152 FFDIDVDKKYQKVDWSKRPLKEEMIAYSVGDVATLVDLHDLLKERLEKIGRLAWAEEEFE 211
Query: 428 LSTFTNSRNICKLKYE----KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
L ++KYE +P+F F+ L+N+ L L + R A
Sbjct: 212 LQA--------RVKYESNHSRPLFRR------FKGAGKLDNRSLAVLEHLLEVRLSEAEK 257
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
KD ++ N +L M Q P ++ I
Sbjct: 258 KDLPPFKIMSNQSILTMVQHRPTSVESIL 286
>gi|418749157|ref|ZP_13305449.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
gi|418757399|ref|ZP_13313587.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384117070|gb|EIE03327.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404276226|gb|EJZ43540.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
Length = 389
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 13/242 (5%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q ++ID E Y +Y CL+QIS++ K+YI D ++L +DL L + + NI+K
Sbjct: 23 LSQSDCLSIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRL-DDLNGLGPLFENPNILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L++DFG + + DT + + L + + SL YL++HY V K Q +
Sbjct: 82 IFHSASDDIKALKRDFGFKFINIADTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV---LSTFTNSRNICKLK 441
W RPL + +QYA DT YL ++ M +L GK+ L+ +S F
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLESIWTKMGEEL-----GKRKLLDEAVSEFAKIAEEEPEP 196
Query: 442 YEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 501
+E N E + N+ L + ++ AL + +RD A+ +++ V N +L++
Sbjct: 197 FEGFSINLEKFPNVLE----LGSDERRALHDTLGFRDEKAKKLNKAPFRVWNNDKVLELV 252
Query: 502 QS 503
+S
Sbjct: 253 KS 254
>gi|270008688|gb|EFA05136.1| hypothetical protein TcasGA2_TC015251 [Tribolium castaneum]
Length = 317
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 132/283 (46%), Gaps = 65/283 (22%)
Query: 210 DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ 269
D+ ES HPY++ L+ E + E + L +TPL I + +L+++LK +
Sbjct: 92 DSCES--HPYKHLLNFEPTVEQLSRVENIEAPKTLKETPLCDIDTKTSLEKLITDLKAWK 149
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
E+ +D+EY ++ Y+ TCL+QIST DKDYI+D + L+++L LNE
Sbjct: 150 ELGVDVEYSDH-GYKALTCLVQISTPDKDYIIDAIALKDELHALNE-------------- 194
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D H A DKT Q D+R RP
Sbjct: 195 -------------------DYHVA----------------------KDKTMQRQDFRRRP 213
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP YAR D+HYL+ Y +K +L A NL+ + + N CK+ Y P +
Sbjct: 214 LPPKFKDYARVDSHYLIGFYHKLKNELIEA-----NLLRAVLDDCNNCCKILY--PKVED 266
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVL 492
E Y+++ R+ ++ +Q L +L WR +IA+ D++ G VL
Sbjct: 267 EAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVL 309
>gi|347755007|ref|YP_004862571.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
gi|347587525|gb|AEP12055.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
Length = 405
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 118/243 (48%), Gaps = 16/243 (6%)
Query: 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 327
Q E+AIDLE+ Y CL+Q+ RD+ VD R +L L +LT I K+ H
Sbjct: 19 QTELAIDLEFQGEGRYTPLLCLVQLGLRDRCVAVD--PFRVNLTPLAPLLTHPGIRKIVH 76
Query: 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLKHYCDVDSDKTFQLFDWR 386
DI L+++ V +FDT A FL + A L + + V K Q DW
Sbjct: 77 AGGQDIVLLRRETDAIPVSVFDTQIAAAFLGYGEATGYAALAQRFAKVSLSKKQQFTDWT 136
Query: 387 HRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPV 446
RPL I+YA D YL VYD + L A HG+ + VL + C + V
Sbjct: 137 RRPLLPEQIEYALNDVRYLFPVYDGLLEQL--AQHGRTDWVL-------DACADAVAQAV 187
Query: 447 -FNEEG--YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
E G Y+ I + ++ + ++ LRELY+WR+ AR ++ G +L + +L Q+A +
Sbjct: 188 RVRETGQEYLKIGKLGSM-SRRELAVLRELYQWREATARSRNRPVGTILHDDVLRQIAYT 246
Query: 504 IPR 506
+PR
Sbjct: 247 LPR 249
Score = 40.8 bits (94), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD---IQGIFACCNPVPQTVKEHV 633
LRELY+WR+ AR ++ G +L + +L Q+A ++PR ++ + N + V E +
Sbjct: 213 LRELYQWREATARSRNRPVGTILHDDVLRQIAYTLPRTETALRQMRGTTNLSRELVTEIL 272
Query: 634 LDI-HAIILKARLQPLTKPVEKLQPSLDGM 662
I A+ L P V + P+LDG+
Sbjct: 273 ETIQQALALPESEWPEPVTVREYDPTLDGL 302
>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 964
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 6/164 (3%)
Query: 261 LVSELKQQQEIAIDLEYH--NYRSYQGYTCLMQISTRDKDYIVDTLKLREDL-EVLNEVL 317
L E+++ IDLEY+ N G+ C +QIST + D+++D + LR + ++LN+ L
Sbjct: 765 LKEEIEKNSIFGIDLEYYSENKDKNLGFVCTIQISTVNMDFMIDAMALRNQINQLLNKSL 824
Query: 318 -TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS--LAYLLKHYCDV 374
+K +K+ HG ++DIKWL+ DF + +V +FDT A + +QS L L + Y V
Sbjct: 825 FLNKTKIKILHGCENDIKWLKNDFDIDIVNLFDTMFAEMIIKNKQQSYSLKNLSQDYLGV 884
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418
+ DK++Q+ DWR RPLP P + YAR D+ LL ++ MK L++
Sbjct: 885 ELDKSYQISDWRIRPLPTPMMNYARVDSFILLRLFPIMKQMLTS 928
>gi|398334995|ref|ZP_10519700.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 366
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
+ Q I+ID E Y +Y CL+QIS + K+YI+D LKL ++L+ L + DK I+K
Sbjct: 1 MSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLDGLGTLFEDKKILK 59
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG V + DT + + L + SL YL+ +Y + K Q +
Sbjct: 60 IFHSAIDDIKALKKDFGFKFVNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 119
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417
W RPL + +QYA DT YL +++ MK +L+
Sbjct: 120 WEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 152
>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 388
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 166/354 (46%), Gaps = 36/354 (10%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS + K+YI+D LKL ++L+ L + DK I+K
Sbjct: 23 LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLDGLGNLFEDKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
W RPL + +QYA DT YL +++ MK +L+ K+NL F+ I E+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWEKMKEELT-----KRNLYEEAFSEFEKIAS---EE 193
Query: 445 PVFNEEG---YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 501
P EG M+ F + ++ + + +RD +R +++ V N ++ +
Sbjct: 194 P--GAEGNSISMDKFPEILEYSADERRFIYDTLVFRDDKSRKLNKAPFRVFNNEKVILLV 251
Query: 502 QSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQ 561
+S RD+ + V + E + I+A PS ++K +
Sbjct: 252 KS-RRDMAKL---TEIVGKKDAESLFRIYA-----------------NPSGPPIQKSELF 290
Query: 562 QVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+ P + N++ + L WR+ I + S + N M+ ++AQ P+ +
Sbjct: 291 K-KPGENLTNEEGERFKRLRIWRETIMSIRRMSHQMMPSNKMIAELAQRNPKTL 343
>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|386075688|ref|YP_005990008.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|417761741|ref|ZP_12409746.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|417771399|ref|ZP_12419294.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417772941|ref|ZP_12420827.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|417785994|ref|ZP_12433691.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|418667421|ref|ZP_13228833.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671067|ref|ZP_13232422.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|418683302|ref|ZP_13244507.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692063|ref|ZP_13253144.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|418702415|ref|ZP_13263323.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704115|ref|ZP_13264995.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710116|ref|ZP_13270898.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418728912|ref|ZP_13287481.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|421083604|ref|ZP_15544478.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|421101603|ref|ZP_15562215.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115524|ref|ZP_15575929.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421126273|ref|ZP_15586510.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421135637|ref|ZP_15595758.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|353459480|gb|AER04025.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|400324875|gb|EJO77159.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400358126|gb|EJP14242.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|409942474|gb|EKN88086.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|409946596|gb|EKN96605.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409950823|gb|EKO05345.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|410012826|gb|EKO70912.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020301|gb|EKO87105.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410368775|gb|EKP24151.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433965|gb|EKP78302.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|410436223|gb|EKP85342.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410577276|gb|EKQ40272.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|410581930|gb|EKQ49736.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|410757024|gb|EKR18642.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410758584|gb|EKR24813.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766337|gb|EKR37024.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769574|gb|EKR44805.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410776315|gb|EKR56294.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|455667095|gb|EMF32456.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455792168|gb|EMF43937.1| 3'-5' exonuclease [Leptospira interrogans serovar Lora str. TE
1992]
gi|456823784|gb|EMF72221.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966971|gb|EMG08438.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 388
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 251 MITEPEQVTQLV-SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + + QLV L Q I++D E Y +Y CL+QIS + K+YI+D LKL ++
Sbjct: 8 IVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QN 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
LE L + DK I+K+FH A DIK L+KDFG + DT + + L + SL YL+
Sbjct: 67 LESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVD 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+Y + K Q +W RPL + +QYA DT YL +++ MK +L
Sbjct: 127 YYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEEL 173
>gi|421099052|ref|ZP_15559712.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
gi|410797786|gb|EKR99885.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
Length = 388
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 168/357 (47%), Gaps = 42/357 (11%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS + K+YI+D LKL ++L+ L + DK I+K
Sbjct: 23 LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLDGLGNLFEDKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLK 441
W RPL + +QYA DT YL +++ MK +L+ K+NL LS F K+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWEKMKEELT-----KRNLYEEALSEFE------KIA 190
Query: 442 YEKPVFNEEG---YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
E+P EG M+ F + ++ + + +RD +R +++ V N ++
Sbjct: 191 CEEP--GSEGNSISMDKFPEILEYSADERRFIYDTLVFRDDKSRKLNKAPFRVFNNEKVI 248
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKK 558
+ +S RDI + V + E + I+A PS ++K
Sbjct: 249 LLVKS-RRDIAKL---TEIVGKKDAESLFQIYA-----------------NPSGPPIQKS 287
Query: 559 QQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+ + P + N++ + L WR+ I + S + N M+ ++AQ P+ +
Sbjct: 288 ELFK-KPGENLTNEEGERFKRLRIWRETIMSIRRMSHQMMPSNKMIAELAQRNPKTL 343
>gi|421121879|ref|ZP_15582169.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
gi|410345216|gb|EKO96335.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
Length = 388
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 251 MITEPEQVTQLV-SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + + QLV L Q I++D E Y +Y CL+QIS + K+YI+D LKL ++
Sbjct: 8 IVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QN 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
LE L + DK I+K+FH A DIK L+KDFG + DT + + L + SL YL+
Sbjct: 67 LESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVD 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+Y + K Q +W RPL + +QYA DT YL +++ MK +L
Sbjct: 127 YYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEEL 173
>gi|456983567|gb|EMG19831.1| 3'-5' exonuclease [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 388
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 251 MITEPEQVTQLV-SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + + QLV L Q I++D E Y +Y CL+QIS + K+YI+D LKL ++
Sbjct: 8 IVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QN 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
LE L + DK I+K+FH A DIK L+KDFG + DT + + L + SL YL+
Sbjct: 67 LESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVD 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+Y + K Q +W RPL + +QYA DT YL +++ MK +L
Sbjct: 127 YYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEEL 173
>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
Length = 374
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 167/379 (44%), Gaps = 41/379 (10%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T + V L +L+ A+DLE + SYQ CL+Q + D ++D L DL
Sbjct: 6 ILTTDDAVVALAKDLETCAVFAVDLEADSMHSYQEKVCLLQFTYHDTTVLLDPLAA-GDL 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKH 370
L VL D +I K+FH AD DI+ L +DF + + G+FDT A +FL + LA +L
Sbjct: 65 APLKPVLADSSIRKIFHAADYDIRCLARDFDIEIRGLFDTMIASQFLGEEKVGLADVLGK 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
Y DV DK FQ DW RPL YA DT +L + ++ A +++ +
Sbjct: 125 YFDVTLDKRFQRADWSKRPLSPEMCHYAAEDTRHLEKLVAILE-----PALKEKDRLWWV 179
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
R + + K+ V + ++ I + + + L L +WR++ A+ +D
Sbjct: 180 EEEFRLLEQAKFR--VHDGPAFLRI-KGAGTMPPRALAILECLLEWREKEAQRRDCPAYK 236
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL-----QSLTKPV 545
V+ N LL A+ +P T E + D+ ARL +++ K +
Sbjct: 237 VVGNKPLLSAARHMP---------------TTMEALKDLEE--FPARLADRYGRAVLKQI 279
Query: 546 EKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRE----LYKWRDRIARDKDESTGYVLPN 601
E G + Q P + A E L WR A+ + G V+ N
Sbjct: 280 ET------GQAVDKDQLPHFPRRERRVRDVAAEERFNRLKSWRSDKAKQLEMDPGIVINN 333
Query: 602 HMLLQMAQSIPRDIQGIFA 620
+L +A+S PR+ Q + A
Sbjct: 334 ALLEAVARSQPRNAQDLMA 352
>gi|335420266|ref|ZP_08551304.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
gi|334894625|gb|EGM32810.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
Length = 382
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 135/278 (48%), Gaps = 9/278 (3%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
++ IT+ + + + ++++ IAID E+ +Y CL+QI+ + ++D + L +
Sbjct: 9 VVTITDDAALAEFAARMRERDWIAIDTEFLRESTYYPELCLVQIADAHEIGLIDVIAL-D 67
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYL 367
DLE L +LTD +++KVFH A+ D++ L + FG +FDT A + + Q A L
Sbjct: 68 DLEPLAALLTDTSVLKVFHSAEQDLEVLYQRFGTMPAPLFDTQVAAPLVGLDDQMGYARL 127
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+K D++ K DW RPLP A+ YA D YL Y + L H ++ +
Sbjct: 128 IKALLDIELPKAHTRTDWSKRPLPTGALDYAADDVRYLALAYHVIGNTL--VEHEREAWL 185
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ F ++ E+ + +S LN Q+ AL E+ WR+R A D
Sbjct: 186 VDDFEQ-----MVQPERFDVDTSAAWRRIKSWHRLNPAQQQALAEIADWREREAMASDRP 240
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
++L + +++++A+ P++ + +T+ H
Sbjct: 241 RRWILADDIVIELAKRRPQNADALGEVRALPAKTLNRH 278
>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
Length = 388
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 8/259 (3%)
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
E V ++ L + IA+D E ++ + L+Q+ST D + ++D L + L
Sbjct: 13 ETVDTFLAGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIGTPTR-LGV 71
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 375
+L D + V H AD D++ L++D+G V +FDT A + L + LA LL+ + +
Sbjct: 72 LLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLGIRAFGLAALLEQFFGIK 131
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 435
DK Q DW RPL + YA DT +LL + D + +L G+ + FT +
Sbjct: 132 LDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDEL--VQKGRWSWAQEEFTRAE 189
Query: 436 NICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNH 495
+ + E P + ++ + + LN ++ LREL +WRD IA + D +T V N
Sbjct: 190 G-TRWEPEAP---DTSFLRL-KGARDLNRRELARLRELVRWRDGIAAELDRATFRVAGNE 244
Query: 496 MLLQMAQSIPRDIQGIFAC 514
+LL +A+ P +FA
Sbjct: 245 VLLDLARQAPATRDALFAV 263
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 621
D N ++ LREL +WRD IA + D +T V N +LL +A+ P +FA
Sbjct: 210 DLNRRELARLRELVRWRDGIAAELDRATFRVAGNEVLLDLARQAPATRDALFAV 263
>gi|398332245|ref|ZP_10516950.1| ribonuclease III [Leptospira alexanderi serovar Manhao 3 str. L 60]
gi|456860990|gb|EMF79700.1| 3'-5' exonuclease [Leptospira weilii serovar Topaz str. LT2116]
Length = 388
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 168/357 (47%), Gaps = 42/357 (11%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS + K+YI+D LKL ++L+ L + DK I+K
Sbjct: 23 LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLDGLGNLFEDKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLK 441
W RPL + +QYA DT YL +++ MK +L+ K+NL LS F K+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWEKMKEELT-----KRNLYEEALSEFE------KIA 190
Query: 442 YEKPVFNEEG---YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
E+P EG M+ F + ++ + + +RD +R +++ V N ++
Sbjct: 191 CEEP--GAEGNSISMDKFPEILEYSADERRFIYDTLVFRDDKSRKLNKAPFRVFNNEKVI 248
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKK 558
+ +S RDI + V + E + I+A PS ++K
Sbjct: 249 LLVKS-RRDIAKL---TEIVGKKDAESLFQIYA-----------------NPSGPPIQKS 287
Query: 559 QQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+ + P + N++ + L WR+ I + S + N M+ ++AQ P+ +
Sbjct: 288 ELFK-KPGENLTNEEGERFKRLRIWRETIMSIRRMSHQMMPSNKMIAELAQRNPKTL 343
>gi|387824213|ref|YP_005823684.1| Ribonuclease D [Francisella cf. novicida 3523]
gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
Length = 364
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 23/268 (8%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ + +IA+D E++ R+Y CL+QI+T ++ +++DTLK D
Sbjct: 1 MIINTNKQLNDVIEIISNTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLK-DLD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLL 368
L ++ +K+I K+ H A +DI +++ F V +FDT A FL QS L LL
Sbjct: 60 FSKLKDIFENKDIQKIIHSATNDIPIIKRFFNCEVNNIFDTQLAAAFLGFQTQSSLKTLL 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
K D++ +K Q DWR+RPL + + YA D YL+ + + + +Q L+
Sbjct: 120 KEILDIEMEKESQFSDWRNRPLTQKQLNYAIKDVEYLIQLKEYL----------QQQLIK 169
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWRDRIAR 482
S + ++ +K FN +I H + N QK+ + + +WR+ IA+
Sbjct: 170 SEYQGFFEQELIEIQKTQFN-----SIENIHTKIGNIQKFDEKTQKNAILIAQWREMIAQ 224
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+K+ ++ N +L +A P+ +
Sbjct: 225 EKNIPVRFIFNNKVLYALAHKNPKSLNS 252
>gi|359729247|ref|ZP_09267943.1| ribonuclease D [Leptospira weilii str. 2006001855]
gi|417777730|ref|ZP_12425544.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
gi|410782027|gb|EKR66592.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
Length = 388
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 168/357 (47%), Gaps = 42/357 (11%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS + K+YI+D LKL ++L+ L + DK I+K
Sbjct: 23 LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLDGLGNLFEDKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLK 441
W RPL + +QYA DT YL +++ MK +L+ K+NL LS F K+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWEKMKEELT-----KRNLYEEALSEFE------KIA 190
Query: 442 YEKPVFNEEG---YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
E+P EG M+ F + ++ + + +RD +R +++ V N ++
Sbjct: 191 CEEP--GTEGNSISMDKFPEILEYSADERRFIYDTLVFRDDKSRKLNKAPFRVFNNEKVI 248
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKK 558
+ +S RDI + V + E + I+A PS ++K
Sbjct: 249 LLVKS-RRDIAKL---TEIVGKKDAESLFQIYA-----------------NPSGPPIQKS 287
Query: 559 QQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+ + P + N++ + L WR+ I + S + N M+ ++AQ P+ +
Sbjct: 288 ELFK-KPGENLTNEEGERFKRLRIWRETIMSIRRMSHQMMPSNKMIAELAQRNPKTL 343
>gi|418715523|ref|ZP_13275644.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
gi|418727334|ref|ZP_13285929.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|409959575|gb|EKO23345.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|410788424|gb|EKR82142.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
Length = 388
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 251 MITEPEQVTQLV-SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + + QLV L Q I++D E Y +Y CL+QIS + K+YI+D LKL ++
Sbjct: 8 IVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QN 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
LE L + DK I+K+FH A DIK L+KDFG + DT + + L + SL YL+
Sbjct: 67 LENLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVD 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+Y + K Q +W RPL + +QYA DT YL +++ MK +L
Sbjct: 127 YYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEEL 173
>gi|417767687|ref|ZP_12415623.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400349705|gb|EJP01993.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
Length = 388
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Query: 251 MITEPEQVTQLV-SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + + QLV L Q I++D E Y +Y CL+QIS + K+YI+D LKL ++
Sbjct: 8 IVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QN 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
LE L + DK I+K+FH A DIK L+KDFG + DT + + L + SL YL+
Sbjct: 67 LESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVD 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+Y + K Q +W RPL + QYA DT YL +++ MK +L
Sbjct: 127 YYHKIKLSKKEQKSNWEKRPLEKSQFQYAALDTVYLETIWEKMKEEL 173
>gi|406573982|ref|ZP_11049722.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
gi|404556583|gb|EKA62045.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
Length = 555
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 20/271 (7%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQ-QEIAIDLEYHNYRSYQGYTCLMQISTR 295
EP +P +ITE ++ + + + +A+D E + Y L+Q+
Sbjct: 26 EPADGVP------AVITEESELDACAAAIAEGYGPVALDAERASGYRYGQAAYLVQVRRE 79
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
+++D + L DL L+ + + H A D+ L D GL +FDT A
Sbjct: 80 GAGTWLIDPVGL-PDLTPLDRAIGTGEWI--LHAATQDLPCL-GDLGLRPRQIFDTELAA 135
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ L +PR LA +++HY + K DW RPLPEP ++YA D L V + M +
Sbjct: 136 RLLGLPRVGLAAVIEHYLGISLAKEHSAVDWSTRPLPEPWLRYAALDVEVLTEVRNLMGI 195
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
DL AA K F L +P E+ + H + + +REL+
Sbjct: 196 DL--AAQDKSEWARQEFE------ALLSWRPAVKEDPWRRTSGLHKIRQPRVLATVRELW 247
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
RDRIARD+D S G V+P+ L+++AQ+ P
Sbjct: 248 YERDRIARDRDTSPGRVIPDTALVEIAQANP 278
Score = 43.5 bits (101), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
+REL+ RDRIARD+D S G V+P+ L+++AQ+ P
Sbjct: 243 VRELWYERDRIARDRDTSPGRVIPDTALVEIAQANP 278
>gi|410941522|ref|ZP_11373317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
gi|410783321|gb|EKR72317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
Length = 372
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
+ Q I++D E Y +Y CL+QIS + K+YI+D LKL ++LE L + DK I+K
Sbjct: 1 MSQANSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLEGLGNLFEDKKILK 59
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
VFH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 60 VFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 119
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + +QYA DT YL +++ M+ +L
Sbjct: 120 WEKRPLEKSQLQYAALDTVYLETIWEKMREEL 151
>gi|398340441|ref|ZP_10525144.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
gi|418693755|ref|ZP_13254804.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|421106132|ref|ZP_15566708.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
gi|409958332|gb|EKO17224.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|410008854|gb|EKO62514.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
Length = 388
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Query: 251 MITEPEQVTQLV-SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + + QLV L Q I++D E Y +Y CL+QIS + K+YI+D LKL ++
Sbjct: 8 IVVDTTRSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QN 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
LE L + DK I+K+FH A DIK L+KDFG + DT + + L + SL YL+
Sbjct: 67 LESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVD 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+Y + K Q +W RPL + +QYA DT YL ++ MK +L
Sbjct: 127 YYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWAKMKEEL 173
>gi|418679035|ref|ZP_13240300.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418685440|ref|ZP_13246616.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740873|ref|ZP_13297249.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089663|ref|ZP_15550467.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|421131604|ref|ZP_15591784.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|400320450|gb|EJO68319.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410001487|gb|EKO52083.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|410356978|gb|EKP04263.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|410740048|gb|EKQ84770.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410751468|gb|EKR08445.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 388
Score = 111 bits (277), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Query: 251 MITEPEQVTQLV-SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++ + + QLV L Q I++D E Y +Y CL+QIS + K+YI+D LKL ++
Sbjct: 8 IVVDTTRSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QN 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
LE L + DK I+K+FH A DIK L+KDFG + DT + + L + SL YL+
Sbjct: 67 LESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVD 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+Y + K Q +W RPL + +QYA DT YL ++ MK +L
Sbjct: 127 YYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWAKMKEEL 173
>gi|418720286|ref|ZP_13279484.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|418738363|ref|ZP_13294758.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|410743264|gb|EKQ92007.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|410745856|gb|EKQ98764.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456888486|gb|EMF99469.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200701203]
Length = 388
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS + K+YI+D LKL ++L+ L + DK I+K
Sbjct: 23 LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLDGLGNLFEDKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417
W RPL + +QYA DT YL +++ MK +L+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 174
>gi|156100329|ref|XP_001615892.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
Sal-1]
gi|148804766|gb|EDL46165.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
Length = 1114
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 115/211 (54%), Gaps = 13/211 (6%)
Query: 217 HPYEYELDLYVPK--------EDFLKCEEPKQALPL--SDTPLMMITEPEQVTQLVSELK 266
HPY YE++ + + F+K P+ LP+ ++ M++ ++ +V+ +K
Sbjct: 420 HPYSYEINDMLSRYHERDESVSPFVKVP-PELPLPVQVNEKECKMVSSEGELIDMVNTIK 478
Query: 267 QQ-QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 325
++++ L + +Y+G+T L+ + T + DYI+D L + E + LNEV TD NI+K+
Sbjct: 479 AGCTKMSLSLVMNYKSTYRGFTSLILVGTEECDYILDALHIFEQMHALNEVTTDPNILKI 538
Query: 326 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDW 385
+ + S I +Q+DF +Y V + D FL + R SLA+L+ +Y V + Q F+
Sbjct: 539 VYKSKSIIPVMQRDFSIYFVNIIDISVCSDFLNV-RNSLAFLVHNYFHVSVNSAGQGFNA 597
Query: 386 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
RPL A+Q R HYL Y+++ +K DL
Sbjct: 598 LTRPLSTDAVQNLRMPFHYLYYLFEYVKTDL 628
>gi|421095097|ref|ZP_15555810.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
gi|410361807|gb|EKP12847.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
Length = 439
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 168/357 (47%), Gaps = 42/357 (11%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS + K+YI+D LKL ++L+ L + DK I+K
Sbjct: 74 LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-QNLDGLGNLFEDKKILK 132
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 133 IFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 192
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLK 441
W RPL + +QYA DT YL +++ MK +L+ K+NL LS F K+
Sbjct: 193 WEKRPLEKSQLQYAALDTVYLETIWEKMKEELT-----KRNLYEEALSEFE------KIA 241
Query: 442 YEKPVFNEEG---YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
E+P EG M+ F + ++ + + +RD +R +++ V N ++
Sbjct: 242 SEEP--GAEGNSISMDKFPEILEYSADERRFIYDTLVFRDDKSRKLNKAPFRVFNNEKVI 299
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKK 558
+ +S RD+ + V + E + I+A PS ++K
Sbjct: 300 LLVKS-RRDMAKL---TEIVGKKDAESLFRIYA-----------------NPSGPPIQKS 338
Query: 559 QQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+ + P + N++ + L WR+ I + S + N M+ ++AQ P+ +
Sbjct: 339 ELFK-KPGENLTNEEGERFKRLRIWRETIMSIRRMSHQMMPSNKMIAELAQRNPKTL 394
>gi|374585390|ref|ZP_09658482.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
gi|373874251|gb|EHQ06245.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
Length = 377
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 165/364 (45%), Gaps = 49/364 (13%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E Y +Y CL+QIST + +I+DTL + +L+ L + +NI K+FH A
Sbjct: 26 LAVDTESSGYYTYYSELCLIQISTDSQHFIIDTLA-KLELQRLAHIFAGQNIPKIFHAAA 84
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
SD+ ++ +G +FDTH A ++L SL L++ Y V+ +K Q +W RPL
Sbjct: 85 SDMGEFRRQYGWSFANVFDTHMAARYLRHEACSLLALVQRYVGVELEKKEQKSNWMKRPL 144
Query: 391 PEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN-IC-----KLKYEK 444
+ + YA DT YL + MK +L A V+ F + +C +L+ EK
Sbjct: 145 TKSQLDYAHLDTVYLYQIMQQMKEELERAG------VMEEFQAEMDWMCEGGDDELEIEK 198
Query: 445 PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
P N +M + L+ + +Y R+ A+ ++ + ++ N
Sbjct: 199 PD-NPNAWMRV-NGAIRLSASARGRFAAVYALREERAKKENIAAFRLMTN---------- 246
Query: 505 PRDIQGIFACCNPVPQTVKE-HVLDIHAIILKAR----LQSL--TKPVEKLQPSLDGMKK 557
+ +F +P+T E H +H + L+ ++SL KP+++L
Sbjct: 247 ----RNLFRLVEELPETTDELHDFGLHPVFLRRDGSRVIESLREAKPIQQL--------P 294
Query: 558 KQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 617
++Q PP R+L +WR +I +D +L N +L ++A+ P +
Sbjct: 295 FDERQWDPPEVEER-----FRKLKEWRQKIVSRRDLEPALILSNRILKEIARKQPISVDD 349
Query: 618 IFAC 621
+ A
Sbjct: 350 LGAL 353
>gi|159163846|pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 444 KPVFNEEGYMNIFRSHA-LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 502
KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+
Sbjct: 8 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 67
Query: 503 SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
+P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 68 ELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 108
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 28 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 87
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 88 RQQINEMHLLIQQAREMPLLK 108
>gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 722
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
P ++I ++ L+ L +Q + ID E ++Y+G+ CL+QIST DY++D
Sbjct: 19 PFQPEKYILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYEGFLCLIQISTDQNDYLID 78
Query: 303 TLKLREDL---EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM 359
L + E L++V K+I+K+F+ DI WL++DF L VV FD + FL
Sbjct: 79 VLGINSKQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFDLSVVNYFDVKECASFLKK 138
Query: 360 P-RQSLAYLLKHYCDVDSDKT----FQLFDWRHRPLPEPAIQYARTDTHYLLYV-YDCMK 413
SL L+ YC+ DK Q+ +W +RPL + + YA D+HYL+ + Y+ +
Sbjct: 139 SDDNSLIQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLDYAALDSHYLIKIRYELLC 198
Query: 414 LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA 469
+ + + + + KYEK F+ + + ++F+ +Q+ YA
Sbjct: 199 ETIQSVGFKR---TIEVINQMQQQTLKKYEKKKFDYQYFFDLFQKQ--FKHQELYA 249
>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
Length = 339
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 9/272 (3%)
Query: 234 KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIS 293
+C + + + + M + +V + +L I++D EY + ++ CL+Q+
Sbjct: 41 RCRKKVSSADVIENSWMWVDSEAKVEEAREDLDSSSLISLDTEYDSMHYFREKLCLVQVR 100
Query: 294 TRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA 353
+ Y+ D DL+ L D ++KV H D+DI+ L++D+G +FDTH+A
Sbjct: 101 ASKRTYVFDPFN-GIDLQFLRPYFADPRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRA 159
Query: 354 CKFLPMPRQSLAYLLKHYCDVDSDKT--FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 411
L +L+ +++ Y V+ +KT Q W RPL E ++YA DT YL +Y
Sbjct: 160 AHMLGSQYLALSSIIEQYLGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRH 219
Query: 412 MKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALR 471
+ LS G Q F N+ + + + + G+ I +A L K L+
Sbjct: 220 LNEKLS--LKGMQERARKVF---ENVAAVSWREKTLDLLGHRRI-SGYASLTADSKGRLK 273
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
+LY+WR AR + + +LP+ LL +++
Sbjct: 274 KLYRWRFHKARQTNRAMFLILPDSALLSLSEG 305
>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
Length = 392
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 11/264 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MITE Q+ V + + +AID E+ ++Y CL+Q++T ++ VD L+L DL
Sbjct: 1 MITEQTQLDAFVEHARAHKVLAIDTEFMREKTYWPKLCLIQLATPERAVAVDPLRL-HDL 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
LN + D+NI+K+FH + D++ + + G +FDT A L Q + Y L+
Sbjct: 60 SALNVLFQDENILKLFHASRQDLEIINIEMGCLPAPIFDTQIAAALLGHTTQ-IGYGPLV 118
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ V K DW RPL + +QYA D YL +YD M L + + +
Sbjct: 119 MNELGVHLKKADSYTDWSRRPLTKSQLQYALDDVIYLPKLYDSMSRKLKKL--NRMDWLA 176
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
S F + + YEKP EE ++++ R + LN QQ R + WR+R A ++
Sbjct: 177 SDFRDLSDPS--NYEKP--PEERFLHLKRVNQ-LNQQQLACARNVAAWRERKAMKRNIPR 231
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIF 512
+VL + L+++ + P+ I +F
Sbjct: 232 KWVLTDEQLVEICKREPQSIDELF 255
>gi|337755515|ref|YP_004648026.1| ribonuclease D [Francisella sp. TX077308]
gi|336447120|gb|AEI36426.1| Ribonuclease D [Francisella sp. TX077308]
Length = 364
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 132/270 (48%), Gaps = 27/270 (10%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +++ +V LK +EIA+D E++ R+Y CL+QI+T ++ +++DTL ED
Sbjct: 1 MIIDTNKKLEDVVKALKNAKEIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTL---ED 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
L+ L ++ D NI K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LDFSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKA 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LLK D++ +K Q DWR RPL + YA D +L+ + H + L
Sbjct: 118 LLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIEI----------KYHLESKL 167
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWRDRI 480
+ + + L+ +K FN I H + N QK+ + + +WR+ I
Sbjct: 168 NQTDYKQYFHEELLEIQKTEFN-----TIDNIHNKIGNIQKFNEKTQKNAILVAQWRESI 222
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
A+ K+ ++ N +L +A P+ +
Sbjct: 223 AQQKNIPVRFIFDNKILYAIAHKNPKSLNS 252
>gi|398348927|ref|ZP_10533630.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 389
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 168/361 (46%), Gaps = 34/361 (9%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS++ K+YI D ++L D+ L + + I+K
Sbjct: 23 LGQSDCISIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRL-ADVSGLGPLFENPAILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L++DF V + DT + + L + + SL YL++HY V K Q +
Sbjct: 82 IFHSASDDIKALKRDFSFKFVNIADTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
W RPL + +QYA DT YL +++ M+ +L+ ++ LS F +E
Sbjct: 142 WEKRPLDKSQLQYAALDTVYLESIWEKMREELAKRKLLEE--ALSEFQKLAEEVPEPFEG 199
Query: 445 PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
E + N+ L++ ++ AL + +RD A+ +++ V N +L++ +
Sbjct: 200 FSITLEKFPNVLD----LSSDERRALYDTMVFRDEKAKRANKAPFRVWNNDKVLELVK-F 254
Query: 505 PRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVS 564
RD+ + V + +H+L I+ P++K D K+ + V
Sbjct: 255 RRDLNKLIEL---VGKKDADHLLQIYN-------TPSGPPIQK----NDLFKRATEDLVG 300
Query: 565 PPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ-----GIF 619
D + L +WR+ I + + N + ++A++ P+ I+ GIF
Sbjct: 301 EDADR-------FKRLRQWRETIMSIRRMGHNLMPSNKNIAEIAKNNPKGIEELRELGIF 353
Query: 620 A 620
+
Sbjct: 354 S 354
>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
Length = 549
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 119/305 (39%), Gaps = 50/305 (16%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+DLE H SY+ CL+QIST D DY+VD L LR +L L D NI KVFH
Sbjct: 229 FGVDLEAHAEHSYESIACLVQISTADVDYVVDALALRFELRALAPAFADPNIRKVFHACQ 288
Query: 331 S-DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT---------- 379
DI LQ+DFG++VV +FDT +A + + L+ Y T
Sbjct: 289 GVDIPRLQRDFGIFVVNVFDTQEAARCAARVLGAPLGLVALYASAGVISTARRDELESLK 348
Query: 380 --FQLFDWRHRPLPEPAIQYARTDTHYL----------LYVYDCMKLDLSAAAHG----- 422
+Q DWR RPL ++YA D +L L +D ++ D G
Sbjct: 349 RAYQNCDWRSRPLSPAQLEYAVCDARHLVDLEAYLNRELRHFDPLR-DYGLPPGGAARDA 407
Query: 423 ----------------KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS--HALLNN 464
+ ++V S + S+ + P + R A L
Sbjct: 408 PRPPPPPGPREAAGDEEADMVASAYCKSQRATLCLWRAP---RSPRLQAARDKQFAALAR 464
Query: 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
L WRD AR DE V P+ L A+ P ++G+ +P+P V
Sbjct: 465 DAAPRFSALVAWRDAEARRLDEGPHAVCPSAALAAFAKRWPTTLRGLLLAFDPLPPLVAT 524
Query: 525 HVLDI 529
+
Sbjct: 525 DAFGV 529
>gi|359684501|ref|ZP_09254502.1| ribonuclease D [Leptospira santarosai str. 2000030832]
gi|410449393|ref|ZP_11303448.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
gi|410016618|gb|EKO78695.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
Length = 388
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q +++D E Y +Y CL+QIS + K+YI+D LKLR +L+ L + +K I+K
Sbjct: 23 LGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLR-NLDGLGTLFENKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + +QYA DT YL +++ MK +L
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWEKMKDEL 173
>gi|456877521|gb|EMF92536.1| 3'-5' exonuclease [Leptospira santarosai str. ST188]
Length = 366
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
+ Q +++D E Y +Y CL+QIS + K+YI+D LKLR +L+ L + +K I+K
Sbjct: 1 MGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLR-NLDGLGTLFENKKILK 59
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 60 IFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 119
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + +QYA DT YL +++ MK +L
Sbjct: 120 WEKRPLEKSQLQYAALDTVYLETIWEKMKDEL 151
>gi|418746085|ref|ZP_13302416.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
gi|410792916|gb|EKR90840.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
Length = 388
Score = 106 bits (265), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q +++D E Y +Y CL+QIS + K+YI+D LKLR +L+ L + +K I+K
Sbjct: 23 LGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLR-NLDGLGTLFENKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + +QYA DT YL ++ MK +L
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWGKMKDEL 173
>gi|418752957|ref|ZP_13309213.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|422002805|ref|ZP_16350040.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
gi|409966640|gb|EKO34481.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|417258550|gb|EKT87937.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
Length = 388
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q +++D E Y +Y CL+QIS + K+YI+D LKLR +L+ L + +K I+K
Sbjct: 23 LGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLR-NLDGLGTLFENKKILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 82 IFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + +QYA DT YL ++ MK +L
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWGKMKDEL 173
>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 700
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 12/179 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAI--DLEYHNYRSYQGYTCLMQIST-RDKDYIVDTLK-- 305
++ P ++ +SEL Q +A+ D+E +N Y TCL+Q+ST Y++D L
Sbjct: 236 LVDTPSKMRACISELSQSPPLALAFDVESYNKSKYTQLTCLLQLSTDHGMAYVIDPLAPG 295
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADS-DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
+ E++ L + D +IVKV H D++ L +DFG++V+ FDT++A K L + L
Sbjct: 296 VFEEVGGLAPIFADPDIVKVGHSIGGLDVRSLHRDFGIFVINAFDTYEAAKVLCLESHGL 355
Query: 365 AYLLKHYCDVDSD------KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417
A + +HY +D +Q DWR RPL P IQY R D H+L+ + M DL+
Sbjct: 356 AAVCEHYGMKYTDLYKSLKNEYQTCDWRARPLTGPMIQYGRFDVHFLIELRMLMIRDLT 414
>gi|421110867|ref|ZP_15571356.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
gi|410803772|gb|EKS09901.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
Length = 366
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
+ Q +++D E Y +Y CL+QIS + K+YI+D LKLR +L+ L + +K I+K
Sbjct: 1 MGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLR-NLDGLGTLFENKKILK 59
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L+KDFG + DT + + L + SL YL+ +Y + K Q +
Sbjct: 60 IFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSN 119
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + +QYA DT YL ++ MK +L
Sbjct: 120 WEKRPLEKSQLQYAALDTVYLETIWGKMKDEL 151
>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
gi|210159428|gb|EEA90399.1| ribonuclease D [Collinsella stercoris DSM 13279]
Length = 377
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 152/340 (44%), Gaps = 19/340 (5%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I+ + ++ + IAID E+ R+Y CL+Q++T D+ ++D L + +D
Sbjct: 1 MYISTYDDLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPDECVVIDPLTI-DD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L L E++ D + +KVFH D++ L G+ +FDT A FL Q + L
Sbjct: 60 LSPLAELMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAGFLGERAQCSYHNLV 119
Query: 370 H-YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
H +C V KT L DW RPL I+YA D YL+ Y ++ L + G+ V
Sbjct: 120 HSFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSL--GRTAWVR 177
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+ + + + + R +A Q A REL WR+ A D+D
Sbjct: 178 DEIRPLADPAHYRSDP----RSAFKRVKRINACTRRQLAVA-RELAAWREHRAEDRDIPR 232
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
+V+ + +L+ + + +P+ I+ A V T + D+ + L A + + P E L
Sbjct: 233 KWVMSDEVLVALCRRVPKTIEDFRA----VRGTEQLSARDVE-VALDAIARGVRCPAENL 287
Query: 549 QPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIA 588
PS+ + + +P +S YAL L R +A
Sbjct: 288 -PSI----GRAHRTPAPELESVIDLMYALIRLVSDRSGVA 322
>gi|398343905|ref|ZP_10528608.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 389
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 11/266 (4%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L Q I+ID E Y +Y CL+QIS++ K+YI D ++L D+ L + + I+K
Sbjct: 23 LAQSDCISIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRL-ADVSGLGPLFENPAILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L++DF V + DT + + L + + SL YL++HY V K Q +
Sbjct: 82 IFHSASDDIKALKRDFSFKFVNIADTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
W RPL + +QYA DT YL +++ M+ +L+ ++ LS F +E
Sbjct: 142 WEKRPLDKSQLQYAALDTVYLESIWEKMREELAKRKLLEE--ALSEFQKLAEEEPEPFEG 199
Query: 445 PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
E + N+ L++ ++ AL + +RD A+ +++ V N +L++ +
Sbjct: 200 FSITLEKFPNVLD----LSSDERRALYDTMVFRDEKAKRANKAPFRVWNNDKVLELVK-F 254
Query: 505 PRDIQGIFACCNPVPQTVKEHVLDIH 530
RD+ + V + +H+L I+
Sbjct: 255 RRDLNKLIEL---VGKKDADHLLQIY 277
>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 366
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 133/270 (49%), Gaps = 27/270 (10%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+QI+T ++ +++DTL ED
Sbjct: 1 MIINTNKQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTL---ED 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
L+ L ++ D NI K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LDFSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKA 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LLK D++ +K Q DWR RPL + YA D +L+ + ++ L+ + KQ
Sbjct: 118 LLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDY-KQYF 176
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE------LYKWRDRI 480
L+ +K FN + H + N QK++ + + +WR+ +
Sbjct: 177 YEEL---------LEIQKTEFN-----TVENIHNKIGNIQKFSEKTQKNAILVAQWRESM 222
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
A+ K+ ++ N +L +A P+ +
Sbjct: 223 AQQKNIPVRFIFDNKILYAIAHKNPKSLNS 252
>gi|389585358|dbj|GAB68089.1| 3'-5' exonuclease domain containing protein [Plasmodium cynomolgi
strain B]
Length = 1136
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 12/229 (5%)
Query: 199 LKPLAILLEKYD-AIESFCHPYEYELDLYVPK--------EDFLKCE-EPKQALPLSDTP 248
LK L + KY + HPY YE++ + + F+K E ++ + LS+
Sbjct: 412 LKRLDKDINKYGPQFSNLGHPYNYEINDMINRYHEWDESVSPFVKVTPELQKPVQLSEKE 471
Query: 249 LMMITEPEQVTQLVSELKQQ-QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
+I+ ++ ++V +K++ ++++ L + +Y+G+T L+ + T + DYI+DTL +
Sbjct: 472 CKIISNEGELVEMVHTIKEKCSKMSLSLVVNYKNTYRGFTSLILVGTEECDYIIDTLHMF 531
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
E + LNEV TD NI+K+ + + + +QKDF +Y V + D FL + R SL YL
Sbjct: 532 EQMHELNEVTTDPNILKILYKSKNITPVMQKDFSIYFVNIIDISICSDFLSV-RNSLPYL 590
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+ +Y V + + RPL + RT HYL Y+++ +K DL
Sbjct: 591 VHNYFHVSVNSAGHGLNALTRPLSPDMVHNLRTPFHYLYYLFEYVKTDL 639
>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
Length = 376
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 127/265 (47%), Gaps = 13/265 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I EQ+ + +AID E+ +++ CL+Q++TR + +VD L + D
Sbjct: 1 MYIETYEQLASFCERATKSDVLAIDTEFMREKTFYPKLCLIQLATRSEIVLVDPLSI-PD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L ++ DK I K+FH D++ + F +FDT A FL R + Y L
Sbjct: 60 LTDLCKLFLDKKITKIFHACSQDLELIYDIFSCLPKPVFDTQVAAAFLG-HRFQIGYGPL 118
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL- 426
+ C V K L DW RPL E ++YA D YL +YD + +L L
Sbjct: 119 VDALCHVHLPKAESLTDWTRRPLAEEQLEYAADDVRYLPRMYDTLLHELKEKERYAWFLE 178
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
+ N ++ K KP +E Y+++ R +L Q A RE+ WRD IA KD
Sbjct: 179 EMHEVCNEHHVIK----KP---QEAYLHMRRISSLTRKQLAIA-REIGIWRDVIASHKDI 230
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGI 511
+V+P+ +++ + +S+P+ ++ +
Sbjct: 231 PRKWVIPDEIVIDLCKSVPKTMERL 255
>gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 364
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 133/271 (49%), Gaps = 29/271 (10%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M+I +Q+ ++ LK +IA+D E++ R+Y CL+QI+T ++ +++DTL ED
Sbjct: 1 MIINTNKQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTL---ED 57
Query: 310 LEV--LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAY 366
L+ L ++ D NI K+ H A +DI +++ F V +FDT A FL Q SL
Sbjct: 58 LDFSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKA 117
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
LLK D++ +K Q DWR RPL + YA D +L+ + H + L
Sbjct: 118 LLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIEI----------KYHLESKL 167
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS-HALLNNQQKYALRE------LYKWRDR 479
N + + YE+ + ++ N + H + N QK++ + + +WR+
Sbjct: 168 ------NQTDYKQYFYEELLDIQKTEFNTVENIHNKIGNIQKFSEKTQKNAILVAQWRES 221
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+A+ K+ ++ N +L +A P+ +
Sbjct: 222 MAQQKNIPVRFIFDNKILYAIAHKNPKSLNS 252
>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
Length = 377
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 11/261 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I+ EQ+ L + +AID E+ R+Y CL+Q++T + +VD L++ ED
Sbjct: 1 MYISTHEQLAALCDAARSFSIVAIDTEFLRERTYHPRLCLVQVATPEVSALVDPLEI-ED 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L ++ D+ K+FH D++ L + +FDT A FL R ++Y L
Sbjct: 60 LSPLAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIFDTQVAAAFLG-ERVQMSYDGL 118
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+K +C V KT L DW HRPL + YA D YL+ Y+ M L G+ +
Sbjct: 119 VKAFCGVSLPKTASLTDWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLE--QRGRMSWA 176
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
L + ++++ + Y + R + Q A REL WR+ A D
Sbjct: 177 LDEMRPLADESHYRHDRRL----AYKRVKRIGSCTRRQLGVA-RELAAWREGRAESHDIP 231
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+++ + +LL +A+ P +
Sbjct: 232 RKWIMSDEVLLALAKRAPHSV 252
>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
Length = 377
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 11/266 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I+ E +T + + IAID E+ ++Y CL+Q++T D+ ++D L + +D
Sbjct: 1 MYISTNEDLTAFCNRARAFSAIAIDTEFLREKTYHAKLCLVQVATPDECVVIDPLAI-DD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L E++TD + +KVFH D++ L G +FDT A FL R +Y L
Sbjct: 60 LGPLAELMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDTQVAAGFLG-ERAQCSYHNL 118
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ +C V KT L DW RPL I+YA D YL+ Y ++ L + G+ V
Sbjct: 119 VSTFCGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIESKLHSL--GRTAWV 176
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ + + + + R +A Q A REL WR++ A +D
Sbjct: 177 RDEIRPLADPAHYRSDP----RAAFKRVKRVNACTRRQLAVA-RELASWREQRAETRDIP 231
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFA 513
+V+ + +LL + + P+ ++ A
Sbjct: 232 RKWVMSDEVLLALCKRAPQTVEDFRA 257
>gi|355575967|ref|ZP_09045340.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
gi|354817183|gb|EHF01693.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
Length = 376
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 128/266 (48%), Gaps = 21/266 (7%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I++ E + + + +A+D E+ R+Y CL+Q++T D+ VD + L ED
Sbjct: 1 MYISDAEGLARFCERASDSKVLAVDTEFLRERTYFPRLCLIQVATADESCAVDPI-LIED 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L +L D+++ KVFH D++ + G +FDT A FL RQ + Y L
Sbjct: 60 LTPLRRLLEDRSVTKVFHACTQDLEVILDGMGCVPAPVFDTQLAAAFLGH-RQQIGYGAL 118
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
++ C V K L DW RPL ++YA D YL +Y+ M +L+ + L
Sbjct: 119 VEACCGVRLPKAESLTDWSRRPLDAEQLRYAEDDVIYLPRIYEQMVSELAR----RDRLA 174
Query: 428 -----LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
+ + T+ + P + Y+++ RS++L Q A RE WR+R A
Sbjct: 175 WLEPEMRSLTDPSRV----ERDP---RDAYLHLKRSNSLTRRQLSVA-REACAWREREAA 226
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDI 508
++ +V+ + +L+++ + PR +
Sbjct: 227 RRNIPRKWVVSDEVLVELCKRAPRGV 252
>gi|221059461|ref|XP_002260376.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
gi|193810449|emb|CAQ41643.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
Length = 1124
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 15/212 (7%)
Query: 217 HPYEYELDLYVPK--------EDFLKC-EEPKQALPLSDTPLMMITEPEQVTQLVSELKQ 267
HPY YE++ + + FLK E K+ L LS+ +I+ ++ ++V +K
Sbjct: 439 HPYSYEINDMINRYHEWDESVSPFLKVIPELKKPLELSEKECKIISTEGELLEMVRTIKS 498
Query: 268 ---QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
+ ++ + Y N +Y+G+T L+ + T + DYI+DTL + E + LN++ TD NI+K
Sbjct: 499 MCTKMSLSPVVNYKN--TYRGFTSLILVGTEECDYIIDTLYMFEKIHELNDITTDPNILK 556
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+ + + + I +QKDF +Y V M D FL + R SL YL+ +Y V+ + +
Sbjct: 557 ILYKSKNIIPVMQKDFSIYFVNMIDISVCSDFLSV-RNSLHYLVHNYFHVNVNSAGNGLN 615
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
RPL + R HYL Y+++ +K DL
Sbjct: 616 ALTRPLSPDLVSNLRMPFHYLYYLFEYVKTDL 647
>gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
Length = 459
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 18/280 (6%)
Query: 251 MITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
+IT Q+ + + ++ +AID E + Y L+Q+ +++D + L
Sbjct: 58 VITTAAQLKECCAAIRAGHGPVAIDAERASGFRYGNDAYLVQLRREGAGTWLIDPVPL-N 116
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL LN + V H A D+ L K GL +FDT + +PR LA +
Sbjct: 117 DLSSLNTAIGSAEWV--LHAATQDLPCL-KALGLRPRKLFDTELGSRLAGLPRVGLAAVT 173
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+H+ V K DW RPLP + YA D L+ V D + DL A GK
Sbjct: 174 EHFVGVTLAKEHSAVDWSTRPLPHDWLVYAALDVERLVEVRDALAADLE--AQGKAEWAR 231
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F L +E P +E + HAL + +Q +R L++ R+ IA+ +D +
Sbjct: 232 QEFE-----ALLDFEGPTPKKEPWRRTSGLHALRDLRQLARVRALWQTREDIAQRRDTTP 286
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLD 528
G VLP+ +++ +A+ P D G+ P ++ V D
Sbjct: 287 GRVLPDALIIDLARRNPHDTSGLVG-----PPAIRPRVGD 321
>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
Length = 376
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 122/261 (46%), Gaps = 11/261 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I++ E +T + + +AID E+ R+Y CL+Q +T D+ +D + L +D
Sbjct: 1 MYISDHEGLTTFCKRVATSRVLAIDTEFLRERTYFPRLCLIQAATPDESAAIDPI-LIDD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L +LTD++I KVFH D++ + +FDT A FL RQ + Y L
Sbjct: 60 LSPLARLLTDESITKVFHACSQDLEVIYDALHCVPGPIFDTQLAAAFLGH-RQQIGYGAL 118
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ C V K L DW RPL + YA D YL +YD M +L + L
Sbjct: 119 VDACCGVRLPKAESLTDWSRRPLDAEQLAYAEDDVRYLPGIYDQMMAELIM----RDRLP 174
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ + + + EE Y+++ RS +L Q A RE+ WR+ A +D
Sbjct: 175 WLAPEMAELVSPAHFMR--VPEEAYLHLRRSGSLTRRQLAIA-REVCAWRESAAARRDVP 231
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ + ++++ + PR +
Sbjct: 232 RKWVVSDELIVEACKRAPRTL 252
>gi|398831381|ref|ZP_10589559.1| ribonuclease D [Phyllobacterium sp. YR531]
gi|398212088|gb|EJM98697.1| ribonuclease D [Phyllobacterium sp. YR531]
Length = 386
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 17/268 (6%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ MIT +Q+ Q V+ L Q + +D E+ ++ C++Q+++ D IVD L
Sbjct: 1 MTMITTTDQLEQAVAALSQSDFVTVDTEFIRETTFWPELCVIQLASPDHTAIVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL +++ D+ IVKVFH A DI+ + L +FDT A C F ++A
Sbjct: 61 DLAAFFKLMADETIVKVFHAARQDIEIIFHLGNLIPHPVFDTQVAAMVCGF----GDAIA 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL E + YA D +L +Y + L S A G+
Sbjct: 117 YDQLVQRVVGAQIDKSSRFTDWRRRPLSEKQLDYALADVTHLRDIY--LHLKKSLEAEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
VL + I + + ++ + + L + LR + WR+R AR+
Sbjct: 175 TEWVL----DEMKILTARETYDMHPDDAWKRL--KMRLRKPVELAVLRSVAAWREREARE 228
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGI 511
++ G V+ + + ++AQ PRD + +
Sbjct: 229 RNVPRGRVIKDDAIYEIAQQQPRDAEAM 256
>gi|406894045|gb|EKD38950.1| hypothetical protein ACD_75C00553G0006 [uncultured bacterium]
Length = 378
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 9/260 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRED 309
+I ++ LV KQ +A+D E+ R+Y L+QI+ D+D Y++D + ++ +
Sbjct: 7 LIQTEAELDILVRRAKQTDAVALDTEFVWERTYYPQLGLIQIALSDEDCYLIDPVAVK-N 65
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L+ L ++L+D+ +VK+ H A D+ LQ+ G +FDT A F +P SL L+
Sbjct: 66 LQALGQLLSDRGVVKILHDAPQDLAILQRATGATPQNIFDTRLAAGFSNLPATLSLGNLV 125
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
K D++ K +W RPL E ++YA D YL V + LS K L
Sbjct: 126 KELLDIELSKEETRTNWLQRPLTEEQVRYALDDVRYLRAVRVLL---LSRIIGPKIRSWL 182
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
N N P +E Y+ I R+ L+ L L WRD +A+ D
Sbjct: 183 QEDLNLLNNPATYCGTPA--DERYLRI-RNIGTLDRPGLAILMNLTTWRDGMAKKHDRPR 239
Query: 489 GYVLPNHMLLQMAQSIPRDI 508
G+++ + +LL++A+ PR +
Sbjct: 240 GHIIKDTILLEIARKKPRTL 259
>gi|389877692|ref|YP_006371257.1| Ribonuclease D [Tistrella mobilis KA081020-065]
gi|388528476|gb|AFK53673.1| Ribonuclease D [Tistrella mobilis KA081020-065]
Length = 422
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 125/266 (46%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT+ + + QLV ELK + + +D E+ ++Y CL+Q++ + VD L DL
Sbjct: 1 MITDTQSLRQLVDELKAEPFVTVDTEFMREKTYWPKLCLVQLAGAQRAAAVDPLADGIDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E+L D +++KVFH A D++ FG MFDT A C F +S+ Y
Sbjct: 61 APLGELLADPSVLKVFHAARQDVEIFLLLFGNVPRPMFDTQVAAMVCGF----GESVGYE 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ DK+ + DW RPL I YA D +L VY +KL G++
Sbjct: 117 TLVNKLAKASIDKSSRFTDWSRRPLTPKQIAYALADVTHLRTVY--LKLAKLLEDSGREE 174
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L + N + +P E R+ + L+ + +REL WR+R A+ ++
Sbjct: 175 W-LDEEMATLNAPETYESRP----EAAWERIRTRS-LDRRFLGLVRELAAWRERQAQSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
++ + LL+MA S PR + +
Sbjct: 229 VPRTFISKDETLLEMASSQPRSAEDL 254
>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
Length = 381
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 9/264 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I E + +AID E+ ++Y CL+Q++T D+ IVD + +D
Sbjct: 1 MYIANQENLAAFAERAMHSSVLAIDTEFLREKTYYAKLCLIQLATDDETAIVDPFAV-DD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L+VL VL ++N++K+FH + D++ L ++ G+ +FDT A L +Q A L+
Sbjct: 60 LKVLAPVLRNENVMKLFHAGNQDLEILLREVGVLPHPLFDTQVAAALLGHTQQIGYAALV 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
C V K DW RPL + ++YA D YL +Y+ M+ L G+ + +
Sbjct: 120 HAECGVTLKKIDSFTDWSRRPLSDSQLEYAADDVVYLPRMYERMRAQL--VELGRLSWLD 177
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + + + NE + + L+ +Q A RE+ WR+ A+ +D
Sbjct: 178 RDFEDLADPARY-----AANERERYKRLKRVSQLSRRQLSAAREVAAWRELEAQRRDVPR 232
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIF 512
+V+ + +++ + PR I +F
Sbjct: 233 KWVVTDEQIVEACKREPRSIDDLF 256
>gi|403737804|ref|ZP_10950532.1| ribonuclease D [Austwickia chelonae NBRC 105200]
gi|403191916|dbj|GAB77302.1| ribonuclease D [Austwickia chelonae NBRC 105200]
Length = 479
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 12/247 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
IA+D E + Y L+Q+ +++D + DL LN L D V H A
Sbjct: 121 IAVDAERASGYRYGQRAYLVQLRREGAGSFLIDPVAC-PDLTPLNPTLADAEWV--LHAA 177
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL+ +FDT + PR LA +L+HY V K DW RP
Sbjct: 178 TQDLPCL-AELGLHPTRLFDTELGARLAGQPRVGLAAVLEHYLGVTLAKEHSAVDWSTRP 236
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ DL GK F + P
Sbjct: 237 LPEPWLRYAVLDVEVLVTLRDAVEKDLH--DQGKSEWARQEFH-----ALTSFAGPARRV 289
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + + H + + + REL+ RD +AR +D S V+P+ LL +A ++P+ +
Sbjct: 290 DPWRRLSGLHKIRDRRTMAVARELWFARDDVARSRDISPSRVIPDAALLDIAHALPQSLS 349
Query: 510 GIFACCN 516
+ A
Sbjct: 350 EVGAATT 356
>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
25986]
gi|133776892|gb|EBA40712.1| ribonuclease D [Collinsella aerofaciens ATCC 25986]
Length = 377
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 35/348 (10%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I+ + + ++ IA+D E+ R++ CL+QI+T + VD L + +D
Sbjct: 1 MYISTHQALLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPLVI-DD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L E++ D+++ KVFH D++ + G+ +FDT A FL RQ ++Y L
Sbjct: 60 LSPLAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFLG-ERQQISYGAL 118
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
++ +C V KT L DW RPL + I+YA D YL+ Y M L G+ + V
Sbjct: 119 VQTFCGVSLPKTESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLREL--GRVDWV 176
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYM----NIFRSHALLNNQQKYAL---RELYKWRDRI 480
L +P+ +E Y FR +N+ ++ L REL WR+
Sbjct: 177 LDEL------------RPLADESHYRADRHEAFRKVKRINSCSRHQLGIARELAAWREDR 224
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540
A ++ +V+ + LL + + P ++ F Q + E +D + +K +
Sbjct: 225 AERRNIPRKWVMSDDTLLALVKRNPVRVEE-FRSIRGTDQ-LGERDVDGALMAIK---RG 279
Query: 541 LTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIA 588
+ P ++L + G +Q+SP +S YAL L R +A
Sbjct: 280 ASCPHDRLPLMVRG-----HRQISPELESVTDLMYALIRLVAERSGVA 322
>gi|308187080|ref|YP_003931211.1| RNase D [Pantoea vagans C9-1]
gi|308057590|gb|ADO09762.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
Length = 373
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + EQ+ + + +Q +A+D E+ R+Y L+Q+ + ++D L +R D
Sbjct: 5 LIDQDEQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNIR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+LTD ++ K H D++ FG+ M DT F P A ++
Sbjct: 64 SPFIALLTDTSVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL + +YA D HYLL + + ++ A + + +
Sbjct: 124 HFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + V +E + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECDNLCQRRLDS-VAPDEAWRDITNAWQ-LRPRQLAALQRLAAWRLKLAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREEHLWKVARFMP 252
>gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|342179222|sp|A9H9B7.1|RND_GLUDA RecName: Full=Ribonuclease D; Short=RNase D
gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
Length = 393
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 11/264 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++IT E +T +V L+++ ++ID E+ R+Y CL+Q++ +D+ +VDTL D
Sbjct: 13 VLITTTEDLTGVVERLRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGID 72
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L +L D +VKVFH A D++ FG +FDT A Q + Y L
Sbjct: 73 LAPLGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALFDTQVAAMVAGFGDQ-VGYDNL 131
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ DK + DW RPL E I YA D +L VY + L G+ + V
Sbjct: 132 VASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERLE--REGRLDWV 189
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
S + + + E M S N + LR + WR+R A+ +
Sbjct: 190 ASDLAVLSDPATFRPDPETLWER--MRPRTS----NRRMLGVLRAITAWREREAQRVNVP 243
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGI 511
+L + LL++A + P D+ +
Sbjct: 244 RQRLLKDESLLEIAATAPADVDAL 267
>gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
Length = 385
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 43/278 (15%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT ++++ S L + + +D E+ ++ CL+Q+++ D +VD L DL
Sbjct: 6 ITTTAELSEACSRLAAAEFVTVDTEFIRETTFWPELCLIQMASDDLAVLVDPLADGLDLA 65
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY-- 366
+++ D+ IVKVFH A D++ + K + V +FDT A C F +S+AY
Sbjct: 66 PFFDLMRDERIVKVFHAARQDVEIIHKLGDIIPVPLFDTQVAAMVCGF----GESIAYDQ 121
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
L+ D DKT + DWR RPL + + YA D YL VY + L A G+
Sbjct: 122 LVARTTDGRIDKTSRFTDWRRRPLSDQQLAYALADVTYLRDVYRFLSAQL--AEKGRTRW 179
Query: 427 V---LSTFTN----------SRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALREL 473
V ++ T+ + KL+ KP+ + L+E+
Sbjct: 180 VDEEMAVLTDPATYDLHPDDAWRRLKLRVRKPI-------------------ELQILKEV 220
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
WR+R AR+ D+ G +L + + ++AQ P D Q +
Sbjct: 221 AAWREREAREADKPRGRILKDDAIYEIAQQAPTDEQSL 258
>gi|403714102|ref|ZP_10940065.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
gi|403211772|dbj|GAB94748.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
Length = 434
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 14/271 (5%)
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK 297
P ++P P +++ E + + + +D E + Y L+Q+ RD
Sbjct: 42 PLISMPADGMPDLVVDERALMRAAAALAAGTGPVGVDAERASGYRYGQRAYLVQLR-RDG 100
Query: 298 --DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK 355
+++D + DL+ + + LT + + H A D+ L + G+ +FDT +
Sbjct: 101 AGTWLIDPVAC-PDLQPIADALT--GVEWILHAATQDLPCL-AEVGMRPQQLFDTELGGR 156
Query: 356 FLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415
+PR L+ +L+HY V K DW RPLPEP ++YA D L + D + D
Sbjct: 157 LAGLPRVGLSAVLEHYLGVRLAKEHSAVDWSTRPLPEPWLRYAALDVELLAELRDAVAAD 216
Query: 416 LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYK 475
L GK F L + P + + H + + +R+L+
Sbjct: 217 LR--EQGKWEWARQEFE-----ALLSFTGPPPRVDPWRRTSGIHKVRGRRNVGIVRDLWL 269
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
RD+IAR +D + G VLP+ +LLQ+AQ+ PR
Sbjct: 270 ARDQIARTRDIAAGRVLPDAVLLQLAQATPR 300
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 613
+R+L+ RD+IAR +D + G VLP+ +LLQ+AQ+ PR
Sbjct: 264 VRDLWLARDQIARTRDIAAGRVLPDAVLLQLAQATPR 300
>gi|381152499|ref|ZP_09864368.1| ribonuclease D [Methylomicrobium album BG8]
gi|380884471|gb|EIC30348.1| ribonuclease D [Methylomicrobium album BG8]
Length = 387
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 143/318 (44%), Gaps = 13/318 (4%)
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
T + I P Q+ +L + + IAID E+ ++Y CL+QI+T D VD + L
Sbjct: 4 TTIEYIDAPAQLAELCTRIHSTPWIAIDTEFLREKTYYPKFCLLQIATPDWVACVDPIAL 63
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLA 365
L+ L E L + IVKV H + D++ + G +FDT A L A
Sbjct: 64 PR-LDELFEALYNPGIVKVLHSSRQDLEIFYQLTGKLPSPIFDTQVAAPLLGYQDNPGYA 122
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ H +V+ +K DW RPL E IQYA D YL +Y M+ LSA G+ +
Sbjct: 123 MLVSHLLNVNLNKAHTRADWSKRPLTEEEIQYAADDVIYLCRIYQLMRDKLSAL--GRLD 180
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
+ F N YE V E + I + L +Q ++ L +WR+ A++++
Sbjct: 181 WLQPDFAELSN--PALYE--VLPEHAWRRI-KGKNKLTGKQLSIIQALAEWRESTAQNEN 235
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
G++L + +L +A+ P + +TV + + II +A+ +P
Sbjct: 236 RPKGWLLRDELLFDIAKLQPETAADLAKIRGINERTVSRYGAALCRIIGEAK----NRPP 291
Query: 546 EKLQPSLDGMKKKQQQQV 563
L +KK QQQ+
Sbjct: 292 IPLHEDGRPLKKTQQQEA 309
>gi|395215204|ref|ZP_10400856.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
gi|394455924|gb|EJF10318.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
Length = 395
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 23/278 (8%)
Query: 239 KQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT-CLMQIS-TRD 296
K +L + ++ + Q + +L+Q E+A+DLE+ R G+ CL+QI+ +
Sbjct: 3 KLSLEEDGVAIELVASDADLHQAIQQLEQCGELAVDLEFDQNRFTYGFNLCLIQIADGKG 62
Query: 297 KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF 356
+I+D + +DL +++ D I K+ H +++DI L K G V G+ DT A K
Sbjct: 63 NCFIIDPFYI-DDLTPFFQLMEDPTITKIIHHSNNDILLLDK-MGCSVKGIVDTDVAAKI 120
Query: 357 LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV-----YDC 411
L R SLA +LK D + DK+ Q +W RPL E ++YA D YL + +
Sbjct: 121 LNYERSSLATVLKEEFDKEIDKSQQSSNWNKRPLTEDQLRYAAIDVIYLHKIKAKLLQEI 180
Query: 412 MKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALR 471
KLD + +L + +LKY + +E ++ + S+ LN Q+Y L+
Sbjct: 181 EKLDRMHWFEEENHL----------LEQLKYTE---SENPHLRLKHSYR-LNYYQQYLLK 226
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
LY +R+ +AR ++ +V+PN L+++A + D+
Sbjct: 227 GLYAFRENMARQFNKPAHFVIPNDALVELANNPNADLH 264
>gi|440759609|ref|ZP_20938742.1| Ribonuclease D [Pantoea agglomerans 299R]
gi|436426678|gb|ELP24382.1| Ribonuclease D [Pantoea agglomerans 299R]
Length = 373
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + +Q+ + + +QQ +A+D E+ R+Y L+Q+ + ++D L +R D
Sbjct: 5 LIDQDDQLADVCQKARQQAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNIR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+LTD + K H D++ FG+ M DT F P A ++
Sbjct: 64 SPFIALLTDTRVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL + +YA D HYLL + + ++ A + + +
Sbjct: 124 HFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + +E + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECDNLCQRRLDS-LSPDEAWRDITNAWQ-LRPRQLAALQRLAAWRLKLAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREEHLWKVARFMP 252
>gi|304396155|ref|ZP_07378037.1| ribonuclease D [Pantoea sp. aB]
gi|304356524|gb|EFM20889.1| ribonuclease D [Pantoea sp. aB]
Length = 373
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + +Q+ + + +QQ +A+D E+ R+Y L+Q+ + ++D L +R D
Sbjct: 5 LIDQNDQLADVCQKARQQAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNIR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+LTD + K H D++ FG+ M DT F P A ++
Sbjct: 64 SPFIALLTDTRVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL + +YA D HYLL + + ++ A + + +
Sbjct: 124 HFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + +E + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECDNLCQRRLDS-LSPDEAWRDITNAWQ-LRPRQLAALQRLAAWRLKLAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREEHLWKVARFMP 252
>gi|381393851|ref|ZP_09919569.1| ribonuclease D [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330123|dbj|GAB54702.1| ribonuclease D [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 403
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 142/301 (47%), Gaps = 9/301 (2%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ + P Q+TQL + Q+ +AID E+ ++ L+Q+ + + ++D + ++ D
Sbjct: 11 LYVDTPAQLTQLCAHYSTQEVLAIDTEFVRTQTLTPILGLIQVFDKHQVALIDPVAIK-D 69
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L + +LT+ NIVKV H D++ L + +FDT A L + A L+
Sbjct: 70 LSEFSSILTNPNIVKVAHACSEDLEALWHHLHIIPTPLFDTQFAAAMLGLGVSVGYANLV 129
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
++ ++ DK DW RPL YA D +L+ +Y+ + + K + VL
Sbjct: 130 ENLFEITVDKGESRTDWIQRPLSSAQCAYASADVTHLMALYEHIYKETQILQ--KTDWVL 187
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
LK P+ E Y ++ +++ L +Q AL+EL KWR +AR ++ +
Sbjct: 188 DEIHQ----LGLKKSIPLPTEIAYYSL-KNNWKLKGKQLSALKELAKWRLEVARKENMAV 242
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
+V+ L ++A +P Q +F C N + + + D+ I A+ QS + V ++
Sbjct: 243 NFVIKEIALFEIASKVPETPQALFDCHNLYSKQARLYKDDLLRICHAAKEQSNIQAVPRI 302
Query: 549 Q 549
Q
Sbjct: 303 Q 303
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 526 VLD-IHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWR 584
VLD IH + LK +S+ P E SL K + +Q+S AL+EL KWR
Sbjct: 186 VLDEIHQLGLK---KSIPLPTEIAYYSLKNNWKLKGKQLS-----------ALKELAKWR 231
Query: 585 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 644
+AR ++ + +V+ L ++A +P Q +F C N + + + D+ I A+
Sbjct: 232 LEVARKENMAVNFVIKEIALFEIASKVPETPQALFDCHNLYSKQARLYKDDLLRICHAAK 291
Query: 645 LQPLTKPVEKLQ 656
Q + V ++Q
Sbjct: 292 EQSNIQAVPRIQ 303
>gi|381404322|ref|ZP_09929006.1| ribonuclease D [Pantoea sp. Sc1]
gi|380737521|gb|EIB98584.1| ribonuclease D [Pantoea sp. Sc1]
Length = 373
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 121/256 (47%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + +Q+ + + +Q +A+D E+ R+Y L+Q+ ++ ++D L +R D
Sbjct: 5 LIDQDDQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDEQLVLIDPLNIR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+LTD + K H D++ FG+ M DT F P A ++
Sbjct: 64 SPFVALLTDTAVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFAAMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL E YA D HYLL + + ++ A + + +
Sbjct: 124 HFTQVELDKSESRTDWLARPLTERQCVYAAADVHYLLPIARQLMVNTEEAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + EE + +I + L +Q AL+ L WR +AR+KD +
Sbjct: 179 ALSECDNLCQRRLDS-LAPEEAWRDITNAWQ-LRPRQLAALQRLAAWRLTLAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREENLWKVARFMP 252
>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
Length = 393
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 18 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLI 77
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L +R D E+L D +VKV H D++ + G V +FDT A +L M
Sbjct: 78 DPLLVR-DWGPFAELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 135
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 136 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLS 193
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 194 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 247
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 248 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 292
>gi|402829193|ref|ZP_10878069.1| ribonuclease D [Slackia sp. CM382]
gi|402284174|gb|EJU32677.1| ribonuclease D [Slackia sp. CM382]
Length = 397
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 9/264 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M IT+ +Q+ + V+ + +AID E+ R Y CL+Q+ T ++ +VD LK+R D
Sbjct: 1 MYITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVR-D 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L +++ D ++VKVFH A D+ L + + +FDT A L Q L+
Sbjct: 60 LSPLRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALLGQTVQVGYGTLV 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ C V K DW RPL I YA D YL +Y +L A G+ + +
Sbjct: 120 LNECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIY--RQLTERLEALGRASWLE 177
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + + + + E ++ L+ +Q + + WR+R A +++
Sbjct: 178 HDFAELVDPSRYR-----VDPENRWRHLKNVNQLSGRQLACAKHVAAWRERKAMERNIPR 232
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIF 512
VL + +++M + PR I +F
Sbjct: 233 KAVLSDVQIVEMCRREPRSIDDMF 256
>gi|342179232|sp|A6V8R6.2|RND_PSEA7 RecName: Full=Ribonuclease D; Short=RNase D
Length = 376
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 1 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLI 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L +R D E+L D +VKV H D++ + G V +FDT A +L M
Sbjct: 61 DPLLVR-DWGPFAELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 118
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 119 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLS 176
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 177 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 230
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 231 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 275
>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
Length = 392
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 10/262 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I PE + + + IA+D E+ ++Y CL+Q +T D+ +D L+L D+
Sbjct: 6 LIETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLRL--DI 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ L + D I KVFH A D++ L ++ G +FDT A L Q A L+K
Sbjct: 64 QQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASMLGYGEQVGYANLVK 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ D DK+ DW RPL I+YA D +L +++ + +L H + + +
Sbjct: 124 TVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELD--THDRMHWLRP 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N L P + + + R L +++ L+ + WR+R A+ +
Sbjct: 182 EMEALSNPA-LYEPDPEQSWQRVSGVKR----LKPKERGVLKCVAAWRERTAQSSNRPRR 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGI 511
+VL + +LL +A+ P D QG+
Sbjct: 237 WVLSDDLLLDIARRTPADAQGL 258
>gi|405983331|ref|ZP_11041637.1| ribonuclease D [Slackia piriformis YIT 12062]
gi|404388937|gb|EJZ84018.1| ribonuclease D [Slackia piriformis YIT 12062]
Length = 382
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 11/265 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M IT+ +Q+ + V+ KQ +A+D E+ ++Y CL+Q++T + VD +++ D
Sbjct: 1 MYITDQKQLKEFVAHAKQSSVLAVDTEFLREKTYWPKLCLIQLATEEVSVAVDPFEIK-D 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L ++ D++I K+FH A D++ + G+ +FDT A L Q L+
Sbjct: 60 LTPLIDLFVDESITKLFHAAVQDMELIVHALGVVPKPVFDTQVAASLLGDTLQIGYGALV 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
C V K DW RPL + I+YA D YL +Y MK L G+ + +
Sbjct: 120 MSECGVRLKKADSFTDWSRRPLTDSQIEYALDDVIYLPMLYRSMKKKLEEL--GRLSWLD 177
Query: 429 STFTNSRNICKLKYE-KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
F + +I + + + F +N L+++Q A RE+ WR+ +A ++
Sbjct: 178 RDFDDLSDIRRYTVDPRTRFKRLKRVN------QLSSKQLSAAREIAAWREELAMKRNIP 231
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIF 512
++L + ++++ + PR + +F
Sbjct: 232 RKWILSDEQVIEICKREPRSLDSMF 256
>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
Length = 372
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 13/263 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++ E + + + L EIA+D E+ +Y + L+Q+ + D +++D LK+ DL
Sbjct: 5 LVESDEALAEALDALSNASEIAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKV-TDL 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ L ++TD KV H D++ + G+ + DT +A L L Y L+
Sbjct: 64 DGLRALMTDTGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALLGKG-FGLGYRALI 122
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ V+ DK DW RPL + YA D L+ + +K DL A + G+ +L
Sbjct: 123 ELLLGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILK-DL-ALSQGRMEWIL 180
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+L E+ + + Y + +S + L+ +Q ALR L +WR+ +AR D+
Sbjct: 181 D---EGEEAIRLLNER---DRDIYRRV-KSASRLSPRQLDALRRLCEWREALARSVDKPR 233
Query: 489 GYVLPNHMLLQMAQSIPRDIQGI 511
G+++ + + +AQS+P DI+ +
Sbjct: 234 GWIVEDKACIAIAQSMPADIEAL 256
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 556 KKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+ K ++SP +Q ALR L +WR+ +AR D+ G+++ + + +AQS+P DI
Sbjct: 200 RVKSASRLSP------RQLDALRRLCEWREALARSVDKPRGWIVEDKACIAIAQSMPADI 253
Query: 616 QGI 618
+ +
Sbjct: 254 EAL 256
>gi|390434792|ref|ZP_10223330.1| ribonuclease D [Pantoea agglomerans IG1]
Length = 373
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + +Q+ + + +Q +A+D E+ R+Y L+Q+ + ++D L +R D
Sbjct: 5 LIDQDDQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDQQLVLIDPLNIR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+LTD ++ K H D++ FG+ M DT F P A ++
Sbjct: 64 SPFIALLTDTSVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL + +YA D HYLL + + ++ A + + +
Sbjct: 124 HFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + +E + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECDNLCQRRLDS-LSPDEAWRDITNAWQ-LRPRQLAALQRLAAWRLKLAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREEHLWKVARFMP 252
>gi|392985222|ref|YP_006483809.1| ribonuclease D [Pseudomonas aeruginosa DK2]
gi|419751377|ref|ZP_14277789.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|384402151|gb|EIE48502.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|392320727|gb|AFM66107.1| ribonuclease D [Pseudomonas aeruginosa DK2]
Length = 376
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 1 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLI 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L L +D E+L D+ +VKV H D++ + G V +FDT A +L M
Sbjct: 61 DPL-LIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 118
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 119 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLS 176
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 177 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 230
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 231 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 275
>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
gi|421515925|ref|ZP_15962611.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
gi|404349653|gb|EJZ75990.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
Length = 380
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 5 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLI 64
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L L +D E+L D+ +VKV H D++ + G V +FDT A +L M
Sbjct: 65 DPL-LIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 122
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 123 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDTRLS 180
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 181 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 234
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 235 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 279
>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
Length = 379
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 53/303 (17%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ I E++ K +A+D E+ ++Y CL+Q+ST + +D L L +D
Sbjct: 4 LYIATSEELFAFCERAKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPL-LIDD 62
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L E+L + IVK+ H D++ L + +FDT A FL M +Q S A L+
Sbjct: 63 LTPLKELLENPEIVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMRQQVSYAGLV 122
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM-----KLDLSAAAHGK 423
+++ +V K L DW RPL + + YA D YL +Y+ M KLD
Sbjct: 123 ENFANVKLAKAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLD-------- 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNE------------EGYMNIFRSHALLNNQQKYALR 471
+L + KP ++ + Y+ + RS +L Q A R
Sbjct: 175 ---------------RLSWLKPEMDQHTNIDQYRRDPYQAYLRLKRSGSLTRRQLAIA-R 218
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP------RDIQGIFACCNPVPQTVKEH 525
E+ WR+ IA +D +VL + +++++ + +P R I+G + Q H
Sbjct: 219 EVCAWREEIAAKRDVPRKWVLSDELIIEICRRVPTTSDRLRKIRGT----EQISQGGVVH 274
Query: 526 VLD 528
+LD
Sbjct: 275 LLD 277
>gi|453046792|gb|EME94507.1| ribonuclease D [Pseudomonas aeruginosa PA21_ST175]
Length = 393
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 18 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLI 77
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L L +D E+L D+ +VKV H D++ + G V +FDT A +L M
Sbjct: 78 DPL-LIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 135
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 136 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLS 193
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 194 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 247
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 248 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 292
>gi|418583147|ref|ZP_13147217.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
gi|375047367|gb|EHS39913.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
Length = 376
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 1 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLI 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L L +D E+L D+ +VKV H D++ + G V +FDT A +L M
Sbjct: 61 DPL-LIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 118
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 119 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDTRLS 176
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 177 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 230
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 231 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 275
>gi|410640439|ref|ZP_11350971.1| ribonuclease D [Glaciecola chathamensis S18K6]
gi|410139972|dbj|GAC09158.1| ribonuclease D [Glaciecola chathamensis S18K6]
Length = 391
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 18/304 (5%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT E + ++L + + IA+D E+ R+ L+QI + ++D L++ D
Sbjct: 6 ITTNETLNAYCAQLAKAEAIAVDTEFVRTRTLYPKLGLIQIYDGQQIALIDPLEI-SDFS 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +LTD+NIVKV H DI+ + +FD+ A + M SL Y L++
Sbjct: 65 ALKAILTDENIVKVLHSCSEDIETFICALDIVPKPIFDSQFAAAIVGMG-ASLGYAKLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+ DK DW RPL +YA D YL +Y ++ A A G+Q V +
Sbjct: 124 VMLDIQVDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLR--DKARAQGRQTWVFA 181
Query: 430 TFTN--SRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
N + + ++ YE Y+NI +++ + + Y L++L WR + A+ +D +
Sbjct: 182 EMDNLSRKKLSQIPYELL------YLNI-KNNWHVKGKSLYVLQQLAAWRAKEAQQRDLA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDIHAIILKARLQSLTKP 544
+V+ L+++A+ +P + PQ ++ + +LDI A + +P
Sbjct: 235 LNFVVRETNLVEVAKKLPTSKNALHQISGLTPQEIRINGQAMLDIVAAAEQVDAAQYPQP 294
Query: 545 VEKL 548
VE+L
Sbjct: 295 VERL 298
>gi|418594535|ref|ZP_13158323.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
gi|375043331|gb|EHS35959.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
Length = 393
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 18 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLI 77
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L L +D E+L D+ +VKV H D++ + G V +FDT A +L M
Sbjct: 78 DPL-LIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 135
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 136 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDTRLS 193
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 194 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 247
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 248 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 292
>gi|407715500|ref|YP_006836780.1| ribonuclease D [Cycloclasticus sp. P1]
gi|407255836|gb|AFT66277.1| Ribonuclease D [Cycloclasticus sp. P1]
Length = 383
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 12/258 (4%)
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
EQ+++ + +K + +AID E+ ++Y+ L+QI+T D I+D + D++ L +
Sbjct: 11 EQLSEFCNTIKNEPWLAIDTEFQREKTYRSILALIQIATADIVAIIDPIAC--DIKPLLD 68
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLKHYCDV 374
+L ++NI+KVFH A D + G + +FDT A L P Q+ A L+ V
Sbjct: 69 ILYNQNILKVFHAARQDQEIFYDLRGKPLAPVFDTQIAAPILGHPEQAGYARLVDDILGV 128
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
K DW RPL E I YA D YL +Y ++ L + N + F
Sbjct: 129 QLSKAHSRTDWLRRPLSEEQITYAADDVIYLAKLYPLLENQLK--EKDRLNWLAPAFA-- 184
Query: 435 RNICKLK-YEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLP 493
++CK Y P E + I R+ L AL++L +WR+ +A+ KD G+++
Sbjct: 185 -DLCKPSLYSNP--PELAWKRI-RAAKRLKGGALSALQKLAEWREDLAQQKDIPRGWIIK 240
Query: 494 NHMLLQMAQSIPRDIQGI 511
+ +L+++A+ P ++ +
Sbjct: 241 DDILIEVAKLKPTNLHTL 258
>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 413
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 11/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ +++D + EDLE L + + + V H A
Sbjct: 44 LAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAEDLEPLRDAI--NGLEWVLHSA 101
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D D+ L + GL +FDT A + R LA +++ ++ K DW RP
Sbjct: 102 DQDLPCL-AELGLEPAALFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSTRP 160
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+ + YA D LL + + M +L AA GK F + R + KP
Sbjct: 161 LPDAWLNYAALDVEVLLELREAMATEL--AAQGKTEWAAQEFEHVR-LAGPPQPKP---- 213
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + + H+L + +Q A+REL+ RD IAR +D S +LP+ ++ A + P+ I
Sbjct: 214 DRWRRTSQIHSLKSPRQLAAVRELWTTRDEIARKRDISPSRILPDSAIVTAASADPKSID 273
Query: 510 GIFA 513
+ A
Sbjct: 274 TLRA 277
>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1087
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 10/182 (5%)
Query: 244 LSDTPLMMITEPEQVTQ-LVSELKQQQEIAIDLEY--HNYRSYQGYTCLMQISTRDKDYI 300
++ P + + + EQ+ + ++ +L Q Q I IDLEY N + C +Q+ST +++
Sbjct: 869 MNSLPSIFVDKEEQLIEKVIPDLLQHQIIGIDLEYWTDNKDQKLSFICTLQLSTLSSNFV 928
Query: 301 VDTLKLREDLEV-LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM 359
+D L L + + V L + VKVFHG ++D+K L+KD +V +FDT +A +L
Sbjct: 929 IDILNLSKSVSVHLKSIFESPKFVKVFHGGETDLKLLKKDLNFNLVNIFDTAKA--YLKQ 986
Query: 360 PRQS----LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415
+ + L+ L + Y + + DK +Q DWR RPLP+P + YA D+ L ++ MK
Sbjct: 987 NKGAGSVSLSSLSQQYLNYNVDKQYQTSDWRIRPLPKPMLNYAMYDSFITLILFFVMKST 1046
Query: 416 LS 417
+S
Sbjct: 1047 IS 1048
>gi|378767004|ref|YP_005195469.1| ribonuclease D [Pantoea ananatis LMG 5342]
gi|365186482|emb|CCF09432.1| Ribonuclease D [Pantoea ananatis LMG 5342]
Length = 373
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I +++ ++ ++ +Q +A+D E+ R+Y L+Q+ ++ ++D L +R D
Sbjct: 5 LIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPVR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
E+LTD + K H D++ F + M DT F P A ++
Sbjct: 64 SPFIELLTDTRVTKFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL E QYA D HYLL + + + A + + +
Sbjct: 124 HFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + E+ + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECENLCQRRLDS-LAPEDAWRDITNAWQ-LRPRQLAALQRLAAWRLKVAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREENLWKVARFMP 252
>gi|386079174|ref|YP_005992699.1| ribonuclease D Rnd [Pantoea ananatis PA13]
gi|354988355|gb|AER32479.1| ribonuclease D Rnd [Pantoea ananatis PA13]
Length = 373
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I +++ ++ ++ +Q +A+D E+ R+Y L+Q+ ++ ++D L +R D
Sbjct: 5 LIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPVR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
E+LTD + K H D++ F + M DT F P A ++
Sbjct: 64 SPFIELLTDTRVTKFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL E QYA D HYLL + + + A + + +
Sbjct: 124 HFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + E+ + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECENLCQRRLDS-LAPEDAWRDITNAWQ-LRPRQLAALQRLAAWRLKVAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREENLWKVARFMP 252
>gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103]
gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103]
Length = 373
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I +++ ++ ++ +Q +A+D E+ R+Y L+Q+ ++ ++D L +R D
Sbjct: 5 LIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPVR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
E+LTD + K H D++ F + M DT F P A ++
Sbjct: 64 SPFIELLTDTRVTKFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL E QYA D HYLL + + + A + + +
Sbjct: 124 HFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGN-----MAA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + E+ + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECENLCQRRLDS-LAPEDAWRDITNAWQ-LRPRQLAALQRLAAWRLKVAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREENLWKVARFMP 252
>gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
Length = 400
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 139/303 (45%), Gaps = 16/303 (5%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT E + ++L + Q IA+D E+ R+ L+QI + ++D L++ D
Sbjct: 16 ITTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEI-SDFT 74
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM-PRQSLAYLLKH 370
L +LTD+NIVKV H DI+ + +FD+ A M P A L++
Sbjct: 75 ALKAILTDENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAITGMGPSLGYAKLVEV 134
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD--CMKLDLSAAAHGKQNLVL 428
D+ DK DW RPL QYA D YL +Y C K A G+Q V
Sbjct: 135 MLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDK----TLAQGRQAWV- 189
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F N+ + K + + E Y+NI +++ + + Y L++L WR + A+ +D +
Sbjct: 190 --FAEMENLTRKKLSQVPY-ELLYLNI-KNNWHVTGKSLYVLQQLTAWRAKEAQQRDLAL 245
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDIHAIILKARLQSLTKPV 545
+V+ L+++A+ +P + PQ ++ + +LDI A + +PV
Sbjct: 246 NFVVREANLVEVAKRLPASKNALHQISGLTPQEIRINGQAMLDIVAAAEHVDESAYPQPV 305
Query: 546 EKL 548
E+L
Sbjct: 306 ERL 308
>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
Length = 445
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 11/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ +++D + EDLE L + + + V H A
Sbjct: 76 LAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAEDLEPLRDAI--NGLEWVLHSA 133
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D D+ L + GL +FDT A + R LA +++ ++ K DW RP
Sbjct: 134 DQDLPCL-AELGLEPAALFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSTRP 192
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+ + YA D LL + + M +L AA GK F + R + KP
Sbjct: 193 LPDAWLNYAALDVEVLLELREAMATEL--AAQGKTEWAAQEFEHVR-LAGPPQPKP---- 245
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + + H+L + +Q A+REL+ RD IAR +D S +LP+ ++ A + P+ I
Sbjct: 246 DRWRRTSQIHSLKSPRQLAAVRELWTTRDEIARKRDISPSRILPDSAIVTAASADPKSID 305
Query: 510 GIFA 513
+ A
Sbjct: 306 TLRA 309
>gi|407974482|ref|ZP_11155391.1| ribonuclease D [Nitratireductor indicus C115]
gi|407430171|gb|EKF42846.1| ribonuclease D [Nitratireductor indicus C115]
Length = 392
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 133/277 (48%), Gaps = 39/277 (14%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ + + ++ LK+ + +D E+ ++ CL+Q++T D +VD L DL
Sbjct: 3 LITKQKDLEAAIAALKKSDFVTVDTEFIRETTFWPELCLIQMATADITVLVDPLASDIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ D+N+VKVFH A DI+ + GL +FD+ A C F S++Y
Sbjct: 63 KPFFELMADENVVKVFHAARQDIEIIHHLGGLIPHPVFDSQVAATVCGF----GDSVSYD 118
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL--SAAAH-- 421
L+ DK+ + DWR RPL + + YA D +L+ VY ++ +L AH
Sbjct: 119 QLVSKITGAHIDKSSRFTDWRRRPLTDKQLSYAAADVTHLIDVYKHLREELQREGRAHWL 178
Query: 422 GKQNLVLSTF-------TNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
++ VL+ ++ KL+ +KP+ + L+++
Sbjct: 179 NEEMAVLTARETYDPHPDDAWKRLKLRIKKPI-------------------ELAVLQQVA 219
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
WR+R AR+++ G VL + + ++AQ P+D + +
Sbjct: 220 AWREREARERNVPRGRVLKDDAIYEVAQQQPKDTEAL 256
>gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola sp. 4H-3-7+YE-5]
gi|410645786|ref|ZP_11356244.1| ribonuclease D [Glaciecola agarilytica NO2]
gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola sp. 4H-3-7+YE-5]
gi|410134672|dbj|GAC04643.1| ribonuclease D [Glaciecola agarilytica NO2]
Length = 391
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 18/304 (5%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT E + ++L + + IA+D E+ R+ L+QI + ++D L++ D
Sbjct: 6 ITTNETLNAYCAQLAKAEAIAVDTEFVRTRTLYPKLGLIQIYDGQQIALIDPLEI-SDFS 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +LTD+NIVKV H DI+ + +FD+ A + M SL Y L++
Sbjct: 65 ALKAILTDENIVKVLHSCSEDIETFICALDIVPKPIFDSQFAAAIVGMG-ASLGYAKLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+ DK DW RPL +YA D YL +Y ++ A A G+Q V +
Sbjct: 124 VMLDIQVDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLR--DKARAQGRQAWVFA 181
Query: 430 TFTN--SRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
N + + ++ YE Y+NI +++ + + Y L++L WR + A+ +D +
Sbjct: 182 EMDNLSRKKLSQIPYELL------YLNI-KNNWHVKGKSLYVLQQLAAWRAKEAQQRDLA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDIHAIILKARLQSLTKP 544
+V+ L+++A+ +P + PQ ++ + +LDI A + +P
Sbjct: 235 LNFVVRETNLVEVAKKLPTSKNALHQISGLTPQEIRINGQAMLDIVAAAEQVDAAQYPQP 294
Query: 545 VEKL 548
VE+L
Sbjct: 295 VERL 298
>gi|372277826|ref|ZP_09513862.1| ribonuclease D [Pantoea sp. SL1_M5]
Length = 373
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 122/256 (47%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + +Q+ + + +Q +A+D E+ R+Y L+Q+ + ++D L +R D
Sbjct: 5 LIDQDDQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDQQLVLIDPLNIR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+LTD + K H D++ FG+ M DT F P A ++
Sbjct: 64 SPFIALLTDTRVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL + +YA D HYLL + + ++ A + + +
Sbjct: 124 HFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGN-----MSA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + + +E + +I + L +Q AL+ L WR ++AR+KD +
Sbjct: 179 ALSECDNLCQRRLDS-LSPDEAWRDITNAWQ-LRPRQLAALQRLAAWRLKLAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREEHLWKVARFMP 252
>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
Length = 376
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 120/258 (46%), Gaps = 11/258 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I+ E++ +A+D E+ ++Y CL+Q+ST ++ +D L + +D
Sbjct: 1 MYISTQEELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLSI-DD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L + D+ IVKV H D++ L +FDT A FL M +Q S A ++
Sbjct: 60 LSPLVRLFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMRQQASYASVV 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH-GKQNLV 427
+HY V KT L DW RPL + YA D YL +Y CM L G
Sbjct: 120 EHYMGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERLMKTNRLGWLMPE 179
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
++ +T N + P +E Y+++ RS++L Q A RE+ WR+ A +
Sbjct: 180 MNAYTAPENFKR----DP---KEAYLHLKRSNSLTRRQMALA-REICAWREERAAQHNIP 231
Query: 488 TGYVLPNHMLLQMAQSIP 505
+++ + L+++ + P
Sbjct: 232 RKWIISDETLVEICKRSP 249
>gi|410626348|ref|ZP_11337111.1| ribonuclease D [Glaciecola mesophila KMM 241]
gi|410154168|dbj|GAC23880.1| ribonuclease D [Glaciecola mesophila KMM 241]
Length = 390
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 12/301 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT E + ++L + Q IA+D E+ R+ L+Q+ + ++D L++ D
Sbjct: 6 ITTDEALNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQVYDGLQIALIDPLEI-SDFT 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM-PRQSLAYLLKH 370
L +LT++NIVKV H DI+ + +FD+ A M P A L++
Sbjct: 65 ALKAILTNENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAITGMGPSLGYAKLVEV 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
D+ DK DW RPL QYA D YL +Y ++ A G+Q V
Sbjct: 125 MLDIQVDKGESRTDWLARPLSPEQCQYAAYDVLYLFQLYPTLR--DKTLAQGRQAWV--- 179
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
F N+ + K + + E Y+NI +++ + + Y L++L WR + A+ +D + +
Sbjct: 180 FAEMENLTRKKLSQIPY-ELLYLNI-KNNWHVTGKSLYVLQQLTAWRAKEAQQRDLALNF 237
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDIHAIILKARLQSLTKPVEK 547
V+ LL++A+ +P + PQ ++ + +LDI A + +PVE+
Sbjct: 238 VVREANLLEVAKRLPASKNALHQISGLTPQEIRINGQAMLDIVAAAEQVDESVYPQPVER 297
Query: 548 L 548
L
Sbjct: 298 L 298
>gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649]
gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649]
Length = 428
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 114/264 (43%), Gaps = 13/264 (4%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIV 301
P TP ++ TE + + +A+D E + Y L+Q+ +++
Sbjct: 40 PADGTPDVVETERRLTEAAEAIAAGEGPVAVDAERASGYRYGQRAYLIQVRREGSGTWLI 99
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D + DL LN+ + + H A D+ L + GL V +FDT + L +PR
Sbjct: 100 DPIAC-PDLSPLNDAIGRAEWI--LHAATQDLACL-AEVGLRPVQLFDTELGARLLGLPR 155
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
LA +++HY + K DW RPLPEP ++YA D L + + M +DL A
Sbjct: 156 VGLAAVVEHYLGLALAKEHSAVDWSTRPLPEPWLRYAALDVEVLTELRNLMGVDL--ARQ 213
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
K F + P G +N RS + +REL+ RD IA
Sbjct: 214 DKSEWARQEFEALLTWEPTERVDPWRRTSG-LNTIRSR-----RGVAVVRELWYARDDIA 267
Query: 482 RDKDESTGYVLPNHMLLQMAQSIP 505
RD+D S G +LP+ L+ +A P
Sbjct: 268 RDRDTSPGRILPDAGLISIATEAP 291
>gi|344943543|ref|ZP_08782830.1| ribonuclease D [Methylobacter tundripaludum SV96]
gi|344260830|gb|EGW21102.1| ribonuclease D [Methylobacter tundripaludum SV96]
Length = 389
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 147/313 (46%), Gaps = 13/313 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I P+Q+ +L ++K++ +A+D E+ ++Y CL+QI+T + +D + L L+
Sbjct: 8 INTPDQLVKLCEQIKKEPWLALDTEFLREKTYYPKFCLLQIATPEWVACIDPIAL-PSLD 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKH 370
+L E + +IVKVFH D++ + G +FDT A L A L+
Sbjct: 67 ILFEAIYSPSIVKVFHSCRQDLEIFYQLTGKLPEPLFDTQIAAPLLGFQENPGYAMLVSS 126
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
+V+ +K DW RPL + IQYA D YL +Y M L A G+ +
Sbjct: 127 LLNVNLNKAHTRADWSKRPLIDAEIQYAADDVIYLCKIYQMMLQKL--AELGRAEWLERD 184
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
F N L KP E+ ++ I + L +Q ++ L +WR++ A+ +D +
Sbjct: 185 FAELAN-PDLYEVKP---EKAWLKI-KGKNKLTGRQLSIVQALAEWREKAAQTEDRPKSW 239
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+L + ML +A+ P + + +TV + ++ +I A+ ++ EK +P
Sbjct: 240 LLRDEMLFDLAKLQPETVSELANVRAINERTVNRYGAELCQLITAAKNRAPIPLNEKGRP 299
Query: 551 SLDGMKKKQQQQV 563
+ KK QQQ+
Sbjct: 300 A----KKTQQQEA 308
>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea blandensis MED297]
gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
Length = 380
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 12/250 (4%)
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ Q+ E IA+D E+ S+ + L+Q+ D+ +++D L++ D L VL
Sbjct: 14 LAQVADEWAAASVIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQI-NDWAPLVRVL 72
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDS 376
+D IVKV H D + L G+ + +FDT A FL P Q S A L++ CDV+
Sbjct: 73 SDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFLGHPVQMSYARLVEAICDVEL 132
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD-CMKLDLSAAAHGKQNLVLSTFTNSR 435
K DW RPL + YA D +L VY C AA +QN +S+
Sbjct: 133 PKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHC------AAQLKEQNRYAWVAEDSQ 186
Query: 436 NICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNH 495
+ + +PV + Y R L ++ L+ L +WR+ +AR + + G +L +
Sbjct: 187 RM--VSNNRPV-PPQSYYQKLRGAWKLKGERLLVLQLLCEWRENLARATNSNRGRILQDK 243
Query: 496 MLLQMAQSIP 505
L+ +A+ +P
Sbjct: 244 DLITLAEKMP 253
>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
gi|416873541|ref|ZP_11917580.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|421175630|ref|ZP_15633306.1| ribonuclease D [Pseudomonas aeruginosa CI27]
gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|334844716|gb|EGM23287.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|404532027|gb|EKA41953.1| ribonuclease D [Pseudomonas aeruginosa CI27]
Length = 374
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + Q E + Q +A+D E+ ++ L+Q+ +++++D L L +D
Sbjct: 9 IRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPL-LIQDWS 67
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
E+L D+ +VKV H D++ + G V +FDT A +L M S+ Y L+K
Sbjct: 68 PFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVK 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E ++YA D +L VY + LD + + L+
Sbjct: 127 EVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLSEEKRAWLLED 184
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N+C+ + + E + L QQ LREL WR+ AR ++
Sbjct: 185 GAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREEQARLRNRPRN 238
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+VL L +A+ +P++ + A + P+TV++
Sbjct: 239 HVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 273
>gi|416856557|ref|ZP_11912131.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|420140701|ref|ZP_14648441.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|421161990|ref|ZP_15620882.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|424940506|ref|ZP_18356269.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|451988440|ref|ZP_21936569.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
gi|334841819|gb|EGM20440.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|346056952|dbj|GAA16835.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|403246543|gb|EJY60259.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|404537329|gb|EKA46933.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|451753938|emb|CCQ89092.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
Length = 374
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + Q E + Q +A+D E+ ++ L+Q+ +++++D L L +D
Sbjct: 9 IRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPL-LIQDWS 67
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
E+L D+ +VKV H D++ + G V +FDT A +L M S+ Y L+K
Sbjct: 68 PFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVK 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E ++YA D +L VY + LD + + L+
Sbjct: 127 EVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLSEEKRAWLLED 184
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N+C+ + + E + L QQ LREL WR+ AR ++
Sbjct: 185 GAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREEQARLRNRPRN 238
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+VL L +A+ +P++ + A + P+TV++
Sbjct: 239 HVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 273
>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|355645431|ref|ZP_09054144.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|386065119|ref|YP_005980423.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|421155212|ref|ZP_15614693.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|421169151|ref|ZP_15627193.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|348033678|dbj|BAK89038.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|354828894|gb|EHF12994.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|404520842|gb|EKA31492.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|404527609|gb|EKA37756.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
Length = 374
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + Q E + Q +A+D E+ ++ L+Q+ +++++D L L +D
Sbjct: 9 IRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPL-LIQDWS 67
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
E+L D+ +VKV H D++ + G V +FDT A +L M S+ Y L+K
Sbjct: 68 PFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVK 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E ++YA D +L VY + LD + + L+
Sbjct: 127 EVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLSEEKRAWLLED 184
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N+C+ + + E + L QQ LREL WR+ AR ++
Sbjct: 185 GAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREEQARLRNRPRN 238
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+VL L +A+ +P++ + A + P+TV++
Sbjct: 239 HVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 273
>gi|374299652|ref|YP_005051291.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
Length = 409
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 18/320 (5%)
Query: 236 EEPKQALP-LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST 294
E P LP + D+ +++ E + +L S L+ + +D E+ R+Y L+Q+
Sbjct: 12 EGPAPELPGVVDSEAILVQSAEALGELCSRLRGCDAVGMDTEFVRSRTYFPTLGLIQLVA 71
Query: 295 RDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++VD L + +DL L E+L D ++K+FH D++ L G +FDT A
Sbjct: 72 DGGVFLVDPLGV-DDLSPLVEILADPRLIKIFHSCQEDLEALYYLCGFAPGPVFDTQVAA 130
Query: 355 KFLPMPRQ-SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413
FL Q L+K V+ DK +W RPL E + YA D YL +Y +
Sbjct: 131 SFLGYGFQPGYGSLVKALFGVELDKDETRSNWIKRPLSESQLIYAAQDVRYLPAMYSILG 190
Query: 414 LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL--LNNQQKYALR 471
L+ + +R C + F + R +L + ++ ALR
Sbjct: 191 QALTEQGR---------LSWAREECAALEGEARFETDAACYYLRMRSLWQFDRRELAALR 241
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHA 531
+L WR+ A +D +VL + L + + P + + A PQ V+ I A
Sbjct: 242 DLSAWREHEAMSRDLPRSFVLDDKSLRAVVRDWPGKLADLAAVEGMRPQVVRRSGKVILA 301
Query: 532 IILKARLQSLTKPVEKLQPS 551
++ +AR P E+L P+
Sbjct: 302 MLRQAR----QLPEEELPPA 317
>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|386059670|ref|YP_005976192.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|421181719|ref|ZP_15639210.1| ribonuclease D [Pseudomonas aeruginosa E2]
gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|347305976|gb|AEO76090.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|404543287|gb|EKA52574.1| ribonuclease D [Pseudomonas aeruginosa E2]
Length = 374
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + Q E + Q +A+D E+ ++ L+Q+ +++++D L L +D
Sbjct: 9 IRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPL-LIQDWS 67
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
E+L D+ +VKV H D++ + G V +FDT A +L M S+ Y L+K
Sbjct: 68 PFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVK 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E ++YA D +L VY + LD + + L+
Sbjct: 127 EVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLSEEKRAWLLED 184
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N+C+ + + E + L QQ LREL WR+ AR ++
Sbjct: 185 GAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREEQARLRNRPRN 238
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+VL L +A+ +P++ + A + P+TV++
Sbjct: 239 HVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 273
>gi|333985394|ref|YP_004514604.1| ribonuclease D [Methylomonas methanica MC09]
gi|333809435|gb|AEG02105.1| ribonuclease D [Methylomonas methanica MC09]
Length = 385
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 9/255 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I PEQ+ L ++Q+ IA+D E+ ++Y CL+QI+ VD L + +DL
Sbjct: 6 IDRPEQLPLLCEHIQQEPWIALDTEFLREKTYYPKFCLLQIAAPGWVACVDPLAI-DDLS 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKH 370
L +V+ + IVKV H D++ + G +FDT A L A L+
Sbjct: 65 PLFDVIYNPEIVKVLHSCRQDLEIFFQITGRIPGPIFDTQIAAPLLGFQENPGYAMLVSS 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
+ +++ K DW RPL E IQYA D YL +Y M L G+ + + S
Sbjct: 125 FLNINLSKAHTRTDWTQRPLSEDQIQYAADDVIYLCKIYTTMCEQLEKL--GRLDWLESD 182
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
F N +L P E ++ I R L +Q L+ L +WR++ A+ +++ +
Sbjct: 183 FALLNN-AELYQLSP---ENAWLKI-RGKNKLTGRQLSILQSLSEWREQTAQTENKPRNW 237
Query: 491 VLPNHMLLQMAQSIP 505
+ P+ MLL++A+ P
Sbjct: 238 LFPDDMLLELAKLQP 252
>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
Length = 374
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + Q E + Q +A+D E+ ++ L+Q+ +++++D L L +D
Sbjct: 9 IRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPL-LIQDWS 67
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
E+L D+ +VKV H D++ + G V +FDT A +L M S+ Y L+K
Sbjct: 68 PFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVK 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E ++YA D +L VY + LD + + L+
Sbjct: 127 EVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDTRLSEEKRAWLLED 184
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N+C+ + + E + L QQ LREL WR+ AR ++
Sbjct: 185 GAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREEQARLRNRPRN 238
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+VL L +A+ +P++ + A + P+TV++
Sbjct: 239 HVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 273
>gi|375101467|ref|ZP_09747730.1| ribonuclease D [Saccharomonospora cyanea NA-134]
gi|374662199|gb|EHR62077.1| ribonuclease D [Saccharomonospora cyanea NA-134]
Length = 413
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 12/258 (4%)
Query: 251 MITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
+I +P + + L + +A+D E + Y L+QI +++D + LR+
Sbjct: 29 VIADPGTLRAACARLAEGSGALAVDTERASGYRYWPKAYLVQIRREGAGTFLIDPIPLRD 88
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L EV+ D V H A D+ L + GL+ +FDT A + R +L L+
Sbjct: 89 DLAPLAEVMKDAEWV--LHAASQDLPCL-AELGLHPPALFDTELAGRLAGYQRVALGTLV 145
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ +K DW RPLP + YA D L+ + D KL+ AA GK L
Sbjct: 146 EELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLRD--KLEAELAASGKLEWAL 203
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F R E P E + H + + A+R L++ RD +AR +D +
Sbjct: 204 QEFEAVRTA-----EPPGPRSEPWRRTSGIHKIRTARGLAAVRALWEARDELARKRDRAP 258
Query: 489 GYVLPNHMLLQMAQSIPR 506
G +LP+ ++ + PR
Sbjct: 259 GRILPDSAIINAVLADPR 276
>gi|402849302|ref|ZP_10897541.1| Ribonuclease D [Rhodovulum sp. PH10]
gi|402500432|gb|EJW12105.1| Ribonuclease D [Rhodovulum sp. PH10]
Length = 406
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 21/278 (7%)
Query: 236 EEPKQA--LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIS 293
EEP +A P +TP+ IT E + + + + +D E+ +Y C+ Q++
Sbjct: 10 EEPARATAAPSIETPIEPITTTEALAAVCERMSAHPFVTVDTEFLRESTYYPLLCVAQMA 69
Query: 294 TRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA 353
+ +VD L DL ++ D+ +VKVFH A DI+ + GL +FDT A
Sbjct: 70 CVGEAVVVDALADGIDLSPFWALMADQRVVKVFHAARQDIEIVWHMAGLIPQPLFDTQVA 129
Query: 354 CKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 411
L +++Y L++ C + DK+ + DW RPL I YA +D +L VY
Sbjct: 130 AMVLGYG-DAISYDQLVQRVCGTNLDKSHRFTDWSRRPLTPAQIMYATSDVTHLRDVYVA 188
Query: 412 MKLDLSAAAHGKQNLV---LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY 468
+ DL A G+ N V + T+ + E R + + ++
Sbjct: 189 LSADL--AKRGRANWVDEEMEVLTSPST----------YRAEPETAWERLKSRVRKPKEL 236
Query: 469 A-LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
A L E+ WR+R A+ +D G VL + ++ ++A P
Sbjct: 237 AILIEVAAWREREAQARDVPRGRVLKDDVIGEIALQAP 274
>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
Length = 374
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 11/259 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + L + +Q+ +A+D E+ R+ L+Q+ + ++D L++ +DL
Sbjct: 10 IDNDDDLAALCRQCRQKDAVALDTEFVRTRTLHAQLGLIQLYDGETLALIDPLEI-QDLG 68
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +++ DKN+VKV H A D++ G+ +FDT A L + ++ Y L+
Sbjct: 69 PLWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLLNLG-GAMGYGKLIH 127
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL E + YA D +YLL VY M+ + G+ + +
Sbjct: 128 HYLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIE--EMGRLDWL-- 183
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ C+ + KP + Y+ + ++ L +Q L+ L WR +A KD +
Sbjct: 184 -WQEGERACRGRL-KPDDPNKAYLKV-KNAWQLKPKQLAVLKALAAWRLGVAEQKDLALS 240
Query: 490 YVLPNHMLLQMAQSIPRDI 508
+V+ + LL +A+ PR +
Sbjct: 241 FVVKDAALLNLARRAPRSM 259
>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
Length = 370
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 137/298 (45%), Gaps = 23/298 (7%)
Query: 262 VSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKN 321
++ L EIA+D E+ SY + L+Q+ T D +++D L + +L+ L +LTD
Sbjct: 16 LASLAGADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTI-SNLDGLRALLTDSA 74
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKT 379
+KV H D++ + G+ + DT +A L L Y L+K V+ DK
Sbjct: 75 CIKVLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKG-FGLGYRALVKELLGVELDKG 133
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
DW RPL E YA D L+ + ++ +L A G+ VL + + K
Sbjct: 134 ETRSDWLKRPLSESQCHYAALDVLELVPAWRILR-EL-AEEQGRMQWVLDEGEEAIRLLK 191
Query: 440 LKYEKPVFNEEGYMNIFR---SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
+ +G I+R S + L+ +Q ALR L +WR+ +AR D+ G+++ +
Sbjct: 192 --------DRDG--QIYRRVKSASRLSRRQLEALRRLCEWREDLARAVDKPRGWIVEDKA 241
Query: 497 LLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDG 554
L +A +IP D A + +P +V D +L Q+L E L P+L G
Sbjct: 242 FLAIAMAIPED-HDALAELDVLPASVLRKQGD---SLLACVEQALQLSEEALPPALPG 295
>gi|339444858|ref|YP_004710862.1| ribonuclease D [Eggerthella sp. YY7918]
gi|338904610|dbj|BAK44461.1| ribonuclease D [Eggerthella sp. YY7918]
Length = 381
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 9/264 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I EQ V +AID E+ ++Y CL+Q++T D+ IVD L +D
Sbjct: 1 MYIANQEQFVAFVQRAMHSNVLAIDTEFMREKTYYAKLCLIQLATDDEVAIVDPFAL-DD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L VL ++ ++K+FH D++ + ++ G+ +FDT A L +Q A L+
Sbjct: 60 LGALAPVLQNEQVMKLFHAGRQDLEIILREVGVLPKPLFDTQVAAALLGHTQQIGYAALV 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
C V K DW RPL E ++YA D YL +Y+ M+ L + + +
Sbjct: 120 HAECGVTLKKIDSFTDWSRRPLSESQLEYAADDVVYLPRMYERMRGQLMKL--NRLSWLD 177
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F N K NE + + L+ +Q A RE+ WR+ A+ +D
Sbjct: 178 PDFEELSNPAKY-----AINERERYRRLKRVSQLSRRQLAAAREVASWRELEAQRRDVPR 232
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIF 512
+V+ + +++ + R I +F
Sbjct: 233 KWVMTDEQIVEACKREARSIDELF 256
>gi|346310745|ref|ZP_08852758.1| ribonuclease D [Collinsella tanakaei YIT 12063]
gi|345897238|gb|EGX67165.1| ribonuclease D [Collinsella tanakaei YIT 12063]
Length = 377
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 15/266 (5%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M I+ E+++ + IA+D E+ R+Y CL+Q++T D+ ++D + + ++
Sbjct: 1 MYISTYEELSAFCERAARFDAIAVDTEFLRERTYHPRLCLVQVATPDECVVIDVIAI-DN 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L ++ D+ VKVFH D++ L G +FDT A FL R +Y +
Sbjct: 60 LAPLAILMRDEGTVKVFHACSQDMEVLNYTLGALPAPIFDTQVAAAFLG-ERMQASYNGM 118
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM--KLDLSAAAHGKQN 425
+ +C V K+ L DW RPL I+YA D YL+ YD + +LD S G+ +
Sbjct: 119 VHAFCGVTLPKSESLTDWSRRPLTPEQIEYALDDVRYLIKAYDVIMERLDKS----GRAS 174
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
VL + ++ V + + R ++L Q A REL WR+ A +
Sbjct: 175 WVLDEIKPLTDRSHYVVDRRV----AFKRVKRVNSLTRRQLAVA-RELAAWREARAEYSN 229
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ + +L+ +++ P D +
Sbjct: 230 IPRKWLMSDEVLIALSKRPPHDAASL 255
>gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H]
gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H]
Length = 379
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 130/270 (48%), Gaps = 23/270 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + + + L +L + + +AID E+ R+ L+Q+ ++ ++D L + +DL
Sbjct: 5 LIEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAI-DDL 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+LT++NI KV H D++ V + D+ FL SL Y ++
Sbjct: 64 APFWALLTNENITKVLHACSEDLEVFLTAGNCKPVNLIDSQIMMSFLGHGL-SLGYAAMV 122
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA---AHGK-- 423
KH+ D++ DK+ DW RPL E + YA D +L +Y + +++ A A+ +
Sbjct: 123 KHFTDIELDKSESRTDWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQIE 182
Query: 424 -QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
Q+++ FT P+ E Y+NI + + LN +Q L+ L WR + A+
Sbjct: 183 TQSMIDKKFT------------PIIESEMYLNI-KMNWRLNPKQLNLLKYLASWRFQQAK 229
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIF 512
+D G+V +H L+ +AQS P + +
Sbjct: 230 KRDLPLGFVAKDHTLMALAQSNPESVNAML 259
>gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27]
gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27]
Length = 360
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 138/272 (50%), Gaps = 16/272 (5%)
Query: 271 IAIDLEYHNYRSY-QGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
AID E N Y Q + L+Q+ R +I DT K+ ++L L +++ + +V H
Sbjct: 8 FAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKI-DNLSKLGDLIGSEEVV--IHA 64
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
A +DIK L++ G+++ +FDT AC+ L +P+ +L+Y+ + + +V K + +W R
Sbjct: 65 AINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVNWSAR 123
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL + ++YA D +LL + +K L A K + F++ + K + E +
Sbjct: 124 PLNKKYLEYAEGDVKHLLDLSQALKTALR--AENKLEIAKEEFSHVFMVVKHQSEIDKLD 181
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+ H L ++ Q+ + L+K RD IAR KD T +L N + +A+ +P ++
Sbjct: 182 K-------FCHGLEDDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRILAKQVPENL 234
Query: 509 QGIFACCNPVPQTVKEHVLDI-HAIILKARLQ 539
+ + + ++ +++ H I +AR+Q
Sbjct: 235 EILKTLLKKDKRPFRKQYINLWHNAISRARVQ 266
>gi|378579869|ref|ZP_09828530.1| ribonuclease D [Pantoea stewartii subsp. stewartii DC283]
gi|377817514|gb|EHU00609.1| ribonuclease D [Pantoea stewartii subsp. stewartii DC283]
Length = 373
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 9/256 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + + ++ + +Q +A+D E+ R+Y L+Q+ ++ ++D L +R D
Sbjct: 5 LIDNDDHLAEVCQKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPVR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+LTD + K H D++ FG+ M DT F P A ++
Sbjct: 64 SPFIALLTDTRVTKFLHAGGEDLEVFLHRFGVLPQPMIDTQILAAFSGQPLSWGFASMVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V+ DK+ DW RPL E QYA D HYLL + + + + V +
Sbjct: 124 HFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMAQVEQVGN-----VTA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ N+C+ + + V + E + L +Q AL+ L WR +AR+KD +
Sbjct: 179 ALSECENLCQRRLD--VLDPEDAWRDITNAWQLRPRQLAALQRLAAWRLNVAREKDMAVN 236
Query: 490 YVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 237 FVVREENLWKVARFMP 252
>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 396
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 23/295 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
I E + E+ Q IA+D E+ ++Y CL+Q++T D +D + L DL
Sbjct: 16 FIDTAEGLAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPDALACIDPIAL-PDL 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D + KV H A D++ L + G +FDT A L Q A +++
Sbjct: 75 GPLAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLLGHGDQIGYARMVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y D++ DK DW RPL ++YA D +L VY + DL G+ + +
Sbjct: 135 IYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDLE--EKGRLDWLSE 192
Query: 430 TFTNSRNICKLKYEKPVFNEEGYM----NIFR---SHALLNNQQKYALRELYKWRDRIAR 482
F + E Y+ N +R L Q L+ L WR+R A
Sbjct: 193 DFAA------------ISEESRYLPDPDNAWRRIKGQKYLKGAQLAVLQALAAWRERQAM 240
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+KD ++L + +L +++Q P D+ + +T++ H + A++ +AR
Sbjct: 241 EKDLPKRWILSDDVLTELSQRSPTDLASLAKVRGLEDKTLQRHGETLLALVREAR 295
>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 406
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L+Q + ++ID E Y +Y CL+QI++ K+Y++D LK+ +L L + D NI+K
Sbjct: 23 LRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKI-TNLSALGPLFEDPNILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L++DFG V DT + + L + + SL+++++HY V K Q +
Sbjct: 82 IFHSAQDDIKALKRDFGFKFVNTADTMISSRLLSLEQSSLSFVVEHYHKVTLSKVEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + ++YA DT YL ++ M+ DL
Sbjct: 142 WEIRPLQKQQLKYAALDTAYLESIWLKMEEDL 173
>gi|410624162|ref|ZP_11334969.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410156244|dbj|GAC30343.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 388
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I PE ++ + + +AID E+ R+ L+Q+ + ++D + L +DL
Sbjct: 6 IDTPEALSDYCARIATADALAIDTEFVRTRTLVPQLGLIQVYDGEHLGLIDPVAL-DDLS 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
NE+L + +I+KV H D+ L + + +FD+ A L M Q+L Y L++
Sbjct: 65 AFNEILVNPSIIKVLHSCSEDLDALWFNLKVIPAPLFDSQFAANLLDMG-QTLGYANLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+V DK DW RPL ++YA D YLL VY + + + S
Sbjct: 124 QMLNVHVDKGESRTDWIARPLSVEQLKYAAADVFYLLPVYRQLAAKIQEIGQTEWVFAES 183
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
F + LK V ++ Y++I +++ + Q + AL+E+ WR + A+ +D +
Sbjct: 184 DFLS------LKKRAEVPSDLAYLSI-KNNWKIGAQSRQALKEIASWRLQQAQKRDMAIN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
+VL +L++A +P + +F + P+ + H
Sbjct: 237 FVLREQGMLEVAMKLPENKAKLFQLESITPKEARIH 272
>gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071]
gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071]
Length = 431
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 121/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I +PE + V+ +A+D E + Y L+Q+
Sbjct: 39 EPREGIP------PVIADPESLATAVAAFASGSGPVAVDAERASGYRYGQRAYLVQLRRA 92
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L L N H A D+ L ++ G+ +FDT A
Sbjct: 93 GAGTALIDPVAC-PDLSGLGAALA--NAEWDLHAATQDLPCL-REIGMVPHSLFDTELAG 148
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 149 RLAGFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 208
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK L F + K + M H + +Q +REL+
Sbjct: 209 ELE--RQGKLEWALEEFDAIASAPPPAPRKDPWRRTSGM-----HRVRRRRQLAVVRELW 261
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
RDRIAR +D S G VLP+ +++ A ++P ++ + A
Sbjct: 262 TLRDRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGA 300
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620
+Q +REL+ RDRIAR +D S G VLP+ +++ A ++P ++ + A
Sbjct: 250 RRRQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGA 300
>gi|407794360|ref|ZP_11141387.1| ribonuclease D [Idiomarina xiamenensis 10-D-4]
gi|407212960|gb|EKE82821.1| ribonuclease D [Idiomarina xiamenensis 10-D-4]
Length = 387
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 129/268 (48%), Gaps = 11/268 (4%)
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
T +IT Q+ + ++++Q +AID E+ R+Y L+Q + ++D L +
Sbjct: 12 TAYQVITAQAQLLEFCQQVREQGWVAIDSEFVRTRTYYAKLGLLQANCGHGAVLIDPL-V 70
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
DL+ ++ D +IVKV H A DI+ + G+ + D+ A FL SL Y
Sbjct: 71 GLDLKPFWRLVGDADIVKVMHAAGEDIQLFWQQGGVQPQHLLDSQIAAAFLGWG-DSLGY 129
Query: 367 --LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
L++ Y D+ DK+ DW RPL E + YA D YL Y DL ++
Sbjct: 130 AALVERYYDISLDKSQSRTDWLARPLSEAQLAYAADDVIYLARFYA----DLRERLVSEE 185
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
L L+ +++ + K +E P+ Y+++ + LN +Q LREL +WR A+ +
Sbjct: 186 RLQLTLQESAQQVDKRCFEPPLALR--YLDVGNAWQ-LNTRQLAVLRELCQWRVSRAQQQ 242
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGIF 512
D +V+ L+ +A+ P+ Q ++
Sbjct: 243 DIPLNFVVKEGALMALAKRPPQQKQHLY 270
>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
Length = 354
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 10/230 (4%)
Query: 272 AIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 331
AID E + Y+ CL+Q S + + ++D L + EDL L L++ + HGAD
Sbjct: 25 AIDTEADSLHRYRESLCLIQFSAKGESVLIDPLVI-EDLSPLGSYLSEATVW--MHGADY 81
Query: 332 DIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 391
D+ ++ FG ++DT + L R L L+ Y V+ K+ Q DW RPL
Sbjct: 82 DMTMFKRQFGDLPKVVYDTQIGARLLGARRFGLGDLVSLYFGVELSKSSQKADWGKRPLS 141
Query: 392 EPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEG 451
I+YA D HYLL + D + L G+ L + T +R + ++ EE
Sbjct: 142 PKMIEYALNDVHYLLEMGDLIVTKLKDL--GRYEWFLESCTAAR---RRVLDRDDSKEET 196
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 501
+ + L+ + L+EL+ WRD AR D + V+PN LL+ +
Sbjct: 197 WR--IQGSGKLDRRGLAFLKELWTWRDSEARSWDRPSFMVVPNRQLLEWS 244
>gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist]
gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist]
Length = 391
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 138/272 (50%), Gaps = 16/272 (5%)
Query: 271 IAIDLEYHNYRSY-QGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
AID E N Y Q + L+Q+ R +I DT K+ ++L L +++ + +V H
Sbjct: 39 FAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKI-DNLSKLGDLIGSEEVV--IHA 95
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 388
A +DIK L++ G+++ +FDT AC+ L +P+ +L+Y+ + + +V K + +W R
Sbjct: 96 AINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVNWSAR 154
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL + ++YA D +LL + +K L A K + F++ + K + E +
Sbjct: 155 PLNKKYLEYAEGDVKHLLDLSQALKTALR--AENKLEIAKEEFSHVFMVVKHQSEIDKLD 212
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+ H L ++ Q+ + L+K RD IAR KD T +L N + +A+ +P ++
Sbjct: 213 K-------FCHGLEDDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRILAKQVPENL 265
Query: 509 QGIFACCNPVPQTVKEHVLDI-HAIILKARLQ 539
+ + + ++ +++ H I +AR+Q
Sbjct: 266 EILKTLLKKDKRPFRKQYINLWHNAISRARVQ 297
>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
Length = 373
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 13/265 (4%)
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
E++ + + + IA+D E+ RSY L+Q+ ++ ++D + + L ++
Sbjct: 14 EKLATVCQQASDKTAIALDTEFIRTRSYYPKFGLIQLFDGEQTSLIDPTTISDFLPFID- 72
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDV 374
+L + NIVKV H D++ Q F + + DT F + A L+ HY ++
Sbjct: 73 LLANPNIVKVLHACSEDLEIFQHQFNQALTPLIDTQIMAAFSGLGLSIGFAKLVNHYLNI 132
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ-NLVLSTFTN 433
+ DK DW RPL E +QYA D +YLL +Y ++ +L+ + N N
Sbjct: 133 ELDKGASRTDWLARPLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQECQLLVN 192
Query: 434 SRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVL 492
RN K + + Y I S+A L QQ L+ L KWR AR +D + +V+
Sbjct: 193 KRN-------KTLELNDAYKEI--SYAWTLTRQQLAILKLLAKWRIEEARKRDLALNFVI 243
Query: 493 PNHMLLQMAQSIPRDIQGIFACCNP 517
L+++A+S P+ + +P
Sbjct: 244 KEQSLIEIAKSQPKHTSQLLTFMHP 268
>gi|332290211|ref|YP_004421063.1| ribonuclease D [Gallibacterium anatis UMN179]
gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179]
Length = 377
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 23/259 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + Q+ QL + + +A+D E+ RSY L+Q+ ++D L + D
Sbjct: 6 IIQQDAQLKQLCEQARHYSVVALDTEFERVRSYYAKLGLIQLYFGADVALIDPLTI-TDW 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+ +L D N++K+ H + DI+ + F M DT FL P+ + A L +
Sbjct: 65 QPFIALLADANVLKILHASGEDIEIFHQQFQQIPTPMLDTQIMANFLGFPQSAGFALLAQ 124
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY V+ DK DW RPL E + YA D +YLL +Y M ++++
Sbjct: 125 HYLQVELDKKASRTDWLKRPLSERQLNYAAADVYYLLPIYQKMAATMASSEWK------- 177
Query: 430 TFTNSRNICKLKYEK---PVFNEEGYMNIFRSHAL----LNNQQKYALRELYKWRDRIAR 482
T + CKL +K + E+ Y++I + L LNN L+ L KWR +
Sbjct: 178 --TAIQQECKLFAQKRCRQISPEKAYLDIGNAWRLNRKALNN-----LKFLAKWRFQEGI 230
Query: 483 DKDESTGYVLPNHMLLQMA 501
++ + +++ + L+QMA
Sbjct: 231 KRNIALNFIVSSEGLVQMA 249
>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
Length = 374
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 126/275 (45%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + Q E + Q +A+D E+ + L+Q+ +++++D L L +D
Sbjct: 9 IRDDASLAQQCREWRTQPYLALDTEFMRVDTSYPAAGLVQVGDGRQEWLIDPL-LIQDWS 67
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
E+L D+ +VKV H D++ + G V +FDT A +L M S+ Y L+K
Sbjct: 68 PFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVK 126
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E ++YA D +L VY + LD + + L+
Sbjct: 127 EVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLSEEKRAWLLED 184
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N+C+ + + E + L QQ LREL WR+ AR ++
Sbjct: 185 GAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREEQARLRNRPRN 238
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+VL L +A+ +P++ + A + P+TV++
Sbjct: 239 HVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 273
>gi|410944601|ref|ZP_11376342.1| ribonuclease D [Gluconobacter frateurii NBRC 101659]
Length = 401
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 22/275 (8%)
Query: 245 SDTPL-MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
SD P +++T E+V +L ++LKQ+ + ID E+ ++Y CL+Q++ + ++DT
Sbjct: 6 SDFPSPVIVTSSEEVARLCNKLKQEPFVTIDTEFVREKTYWPELCLVQLAGAEDVAVIDT 65
Query: 304 LKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
L DL L E+L + +KVFH A D++ F +FDT A Q
Sbjct: 66 LAPGIDLAPLGELLDEPGCIKVFHAARQDLEIFLHIFNRLPQSLFDTQVAAMVAGFGDQ- 124
Query: 364 LAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
+ Y L+ DK + DW RPL + I YA D +L VY ++ L
Sbjct: 125 VGYDSLVGAITGQAIDKAHRFSDWSARPLTKAQIAYAAADVTHLRTVYLALRKQLEDEGR 184
Query: 422 GK----QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKW 476
+ + VL++ R + +EK A NN++ LRE+ W
Sbjct: 185 LRWADAEQAVLTSEETFRPDPRRLWEK-------------LKARTNNRRMLGILREIVAW 231
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
R++ A++ D V+ + LL++A P I+G+
Sbjct: 232 REQEAQNADIPRQRVIRDESLLEIAAIKPNSIEGL 266
>gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213]
gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
gi|452744555|ref|ZP_21944398.1| ribonuclease D [Mannheimia haemolytica serotype 6 str. H23]
gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213]
gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|452087331|gb|EME03711.1| ribonuclease D [Mannheimia haemolytica serotype 6 str. H23]
Length = 372
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 123/267 (46%), Gaps = 17/267 (6%)
Query: 256 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNE 315
EQ+ + + ++ + +A+D E+ R+Y L+Q+ + ++D + D
Sbjct: 14 EQLEAVCEQARKTKVVALDTEFIRTRTYYPILGLIQLFDGQQVSLIDPNTI-SDFSPFVS 72
Query: 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDV 374
+L DKNI+KV H D++ + F M DT F + A L+ HY ++
Sbjct: 73 LLADKNIIKVLHACSEDLEVFEYQFKQLPEPMLDTQVMAAFAGIGISMGFAKLVSHYLNI 132
Query: 375 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNS 434
+ DK DW RPL +QYA D YLL VY+ + Q L ST+ ++
Sbjct: 133 ELDKGASRTDWLARPLSAEQLQYAAADVWYLLPVYEKL----------AQALTKSTWQSA 182
Query: 435 ---RNICKLKYEK-PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
+ LK K P+ E+ Y NI + LN ++ L+ L KWR A+ ++ + +
Sbjct: 183 VAEECVALLKKAKQPINKEKAYKNIANAWR-LNREELAILQVLAKWRIEEAQKRNLALNF 241
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNP 517
V+ L+Q+A+S P+ + +P
Sbjct: 242 VVKEASLVQIAKSCPKHTSSLLEFMHP 268
>gi|418294438|ref|ZP_12906333.1| ribonuclease D [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065816|gb|EHY78559.1| ribonuclease D [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 374
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + E +T+L +E +Q +A+D E+ ++ L+Q+ + Y++D L +R D
Sbjct: 8 VLDDEHLTRLCAEWRQLPYVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLSVR-DWS 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
VL D +VKV H D++ L + G + +FDT A +L + S+ Y L++
Sbjct: 67 AFAGVLQDPAVVKVLHACSEDLEVLLRLTGSLPLPLFDTQLAAGYLNIGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E +QYA D +L +Y+ + LS K+ VL
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSEMQVQYAAEDAQHLAELYEALLPKLS---DDKRAWVLD 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E +E Y ++ ++ L QQ L+ L WR+R AR +++
Sbjct: 183 --DGAELVANLQRESD--PDEAYRDVKQAWR-LKPQQLAVLKVLTAWRERQARIRNQPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
VL L +A++ PRD+ + + P+TV++
Sbjct: 238 RVLREASLWPLARTQPRDLVTLARIEDMHPRTVRQ 272
>gi|408791723|ref|ZP_11203333.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463133|gb|EKJ86858.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 406
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L+Q + ++ID E Y +Y CL+QI++ K+Y++D LK+ +L L + D+NI+K
Sbjct: 23 LRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKI-TNLSALGPLFKDENILK 81
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
+FH A DIK L++DFG V DT + + L + + SL+++++HY V K Q +
Sbjct: 82 IFHSAQDDIKALKRDFGFEFVNTADTMISSRLLSLEQSSLSHVVEHYHKVTLSKVEQKSN 141
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
W RPL + ++YA DT YL ++ M+ +L
Sbjct: 142 WEIRPLQKQQLKYAALDTAYLESIWLKMEEEL 173
>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
Length = 411
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 12/239 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++VD + LE L++ + D + H A
Sbjct: 52 VALDAERASGYRYSQRAYLVQLRREGSGTHLVDPIGF-GGLEDLDDAIGDAEWI--LHAA 108
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + L +PR LA L++H+ K DW RP
Sbjct: 109 TQDLPCL-AEIGLRPRALFDTEHAGRLLNLPRVGLATLVEHFLGRSLAKEHSAADWSTRP 167
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP + YA D L+ + D + +L A GK+ F L + P
Sbjct: 168 LPEPWLVYAALDVEVLVELRDLLDAELREA--GKREWAAQDFE-----ALLSFTGPPEKT 220
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E + H + + +R L+ RD IA +D + G +LP+ L+++A + P+D+
Sbjct: 221 ERWRRTSGMHRVRGRRTLALVRALWLTRDEIAEHRDTTPGRILPDAALVEIATAAPQDM 279
>gi|110739343|dbj|BAF01584.1| hypothetical protein [Arabidopsis thaliana]
Length = 377
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNL---VLSTFTNSRNICKLKYEKPVFNEEGY 452
+YAR DTHYLLY+YD M+++L A + ++ + S ++C YEK ++ + Y
Sbjct: 3 RYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSY 62
Query: 453 MNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
++++ LN Q + L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 63 LHVYGVQTGNLNAVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 116
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 580 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 612
L +WRDRIAR DESTGYVLPN L +A+ +P
Sbjct: 84 LCEWRDRIARADDESTGYVLPNKTLFDIAKEMP 116
>gi|407782079|ref|ZP_11129294.1| ribonuclease D [Oceanibaculum indicum P24]
gi|407206552|gb|EKE76503.1| ribonuclease D [Oceanibaculum indicum P24]
Length = 390
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 21/262 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ + + L + + I +D E+ ++Y CL+Q++ D +D L DL
Sbjct: 4 LITDTKTLDVFCRGLAKAEYITVDTEFMREKTYYPQLCLIQLAGPDTAAAIDPLAPGIDL 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ + ++L D I+KVFH A DI+ + G+ +FDT A C F S+ Y
Sbjct: 64 KPVFDLLADPGILKVFHAARQDIEIFYQLTGVVPAPLFDTQVAAMVCGF----GDSVGYE 119
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L + DK+ + DW HRPL + YA D +L +YD KL +G+ +
Sbjct: 120 TLATKLVNARIDKSSRFTDWSHRPLAPHQLDYALADVTHLRIIYD--KLSAMLEKNGRAS 177
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY--ALRELYKWRDRIARD 483
+ N P + M+ +R N K+ LRE+ WR+ AR
Sbjct: 178 WLTEEMAVLSN--------PATYDADPMDSWRRLKPRTNSTKFLAILREIAAWREIEARK 229
Query: 484 KDESTGYVLPNHMLLQMAQSIP 505
+D +L + LL++A +P
Sbjct: 230 RDLPRNRLLRDEALLEIAARVP 251
>gi|427429224|ref|ZP_18919260.1| Ribonuclease D [Caenispirillum salinarum AK4]
gi|425880904|gb|EKV29598.1| Ribonuclease D [Caenispirillum salinarum AK4]
Length = 390
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 123/270 (45%), Gaps = 25/270 (9%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +I + + + L L + + I +D E+ R+Y CL+Q++ D+ + +D L
Sbjct: 1 MTLIADSDALRALCDRLSKAEYITVDTEFMRDRTYWPGLCLIQVAGPDEAWCIDPLAPGM 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL L +++ D++++KVFH A D++ + G + +FDT A C F S+
Sbjct: 61 DLTPLFDLMRDESVLKVFHAARQDLEIFYRAMGAFPKPLFDTQIAAMVCGF----GDSVG 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM--KLDLSAAAH 421
Y L DK+ + DW RPL E + YA D +L VYD + +L+ + AH
Sbjct: 117 YETLATKLAKARIDKSMRFTDWGRRPLTEKQLNYALADVTHLRVVYDKLRKRLEKTGRAH 176
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY--ALRELYKWRDR 479
+ + EK F+ + + ++ L+E+ WR+R
Sbjct: 177 ---------WLTEEMDALVAPEKYTFDPDAAWQRMKPR---TKSPRFLAVLKEVAAWRER 224
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
A+ KD VL + +L++A P+ ++
Sbjct: 225 EAQTKDMPRQRVLKDEAILEIAAHGPKTVE 254
>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
Length = 383
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 11/254 (4%)
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ L L Q IA+D E+ R+Y + L+QI+ + Y++D L + D + + +VL
Sbjct: 27 LADLCQSLSTQSAIALDTEFVRTRTYYPHIGLLQIADENGVYLIDPLAI-SDTQPMADVL 85
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVD 375
+ IVKV H D++ Q FG+ +FDT A F S+ Y LL+ +D
Sbjct: 86 QNPAIVKVVHACSEDLEVFQYAFGVLPESLFDTQVAAGFAGYG-SSIGYANLLREIKRID 144
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 435
K DW RPL + ++YA D YLL +Y + L +Q L+ R
Sbjct: 145 IPKQETRSDWLQRPLSDAQLRYAALDVEYLLEIYRGLVEKL----QQQQRLLWVEADCQR 200
Query: 436 NICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNH 495
I KL+ +E Y +S L+ +Q L + +WR+ A+ D +L +
Sbjct: 201 MIEKLRNTS---HENTYYTRVKSAWKLDAEQLTVLAAICRWREGQAKKNDVPRSRILKDV 257
Query: 496 MLLQMAQSIPRDIQ 509
L +A +P D+Q
Sbjct: 258 SLFDIALKLPMDMQ 271
>gi|363420406|ref|ZP_09308498.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
gi|359735648|gb|EHK84605.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
Length = 417
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 122/276 (44%), Gaps = 20/276 (7%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP+ +P ++T V + L Q +A+D E + Y G L+Q+ R
Sbjct: 22 EPRDGVP------KVVTTARGVADAAAMLAQGHGPLAVDAERASGYRYSGRAYLVQLR-R 74
Query: 296 DK--DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA 353
D ++D + R+DL L EV+ D + V H AD D+ L + GL ++DT A
Sbjct: 75 DGAGTVLLDPIPTRDDLAPLTEVIND--LEWVLHSADQDLPGL-AELGLRPAKLYDTELA 131
Query: 354 CKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413
+ PR LA ++ ++ K DW RPLP+ + YA D L+ + D M
Sbjct: 132 GRLAGFPRVGLAAIVAETLGLELRKGHGAADWSTRPLPDSWLNYAALDVEPLVELRDAMA 191
Query: 414 LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALREL 473
+L K F + R P + + + HA+ + ++ +REL
Sbjct: 192 RELE--RQNKTEWAAQEFEHIRLAG-----PPAPKPDRWRRTSKIHAIKDRRRLAIVREL 244
Query: 474 YKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ RD IA +D + G +LP+ ++ A++ P ++
Sbjct: 245 WTTRDEIAARRDIAPGRILPDSAIIAAAEANPTSVE 280
>gi|395786188|ref|ZP_10465915.1| ribonuclease D [Bartonella tamiae Th239]
gi|423716919|ref|ZP_17691109.1| ribonuclease D [Bartonella tamiae Th307]
gi|395422486|gb|EJF88682.1| ribonuclease D [Bartonella tamiae Th239]
gi|395428993|gb|EJF95068.1| ribonuclease D [Bartonella tamiae Th307]
Length = 386
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 13/260 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ + + ++ L+Q Q + +D E+ ++ CL+QIS+ + ++D L DL
Sbjct: 3 LITQTDDLNTAIAILRQSQFVTVDTEFIRETTFWPELCLIQISSDELSVLIDPLSENIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+++D +VKVFH A DI+ + K GL +FDT A ++++Y ++
Sbjct: 63 SSFFTLISDTQVVKVFHSARQDIEIIYKMAGLIPTPLFDTQIAAAICGYG-ETISYDQIV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ-NLV 427
DKT + DW RPL E + YA D YL VY + +L N
Sbjct: 122 NRITGDTIDKTSRFTDWSARPLSENQLSYALADVTYLRQVYRVLNEELEKKGRSDWLNEE 181
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+S + Y+ P +E + + L +++ L+++ WR+R A+ ++
Sbjct: 182 MSVLKTPKT-----YDLP--EDEAWKKV--KGRLRKSRELAVLQKIAAWREREAKMRNIP 232
Query: 488 TGYVLPNHMLLQMAQSIPRD 507
G VL + L+++A P+D
Sbjct: 233 RGRVLKDEALIEIATQQPKD 252
>gi|338532921|ref|YP_004666255.1| putative ribonuclease D [Myxococcus fulvus HW-1]
gi|337259017|gb|AEI65177.1| putative ribonuclease D [Myxococcus fulvus HW-1]
Length = 378
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 165/358 (46%), Gaps = 26/358 (7%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L+Q +EIA+DLE + +++ C +Q++T D+ +++DTL+ +L ++ D K
Sbjct: 13 LEQAREIAVDLEADSMHAFRARLCFLQLATDDEVFLLDTLQPGVVPGMLAPLMADPARTK 72
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
FH A D+++L + G+ V G+FDTH+A L P+ LA + + V+ K Q D
Sbjct: 73 FFHAAQGDLQFL-AEVGVRVQGLFDTHRAATLLGWPKVGLADIARERLGVELPKEHQQSD 131
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
+ RPLP +Y D YL + ++ A + +++ + +C +
Sbjct: 132 FSIRPLPPGMREYIANDVRYLCELGRQVR-----DACREADILEEVLLDCARLCDEAAAR 186
Query: 445 PVFNEEGYMNIFRSHALLNNQQ---KYALRE-LYKWRDRIARDKDESTGYVLPNHMLLQM 500
P + + R+ LN Q +A+ + L++ R A ++ G +L N + +
Sbjct: 187 PDVGADYKPKLPRAG--LNPVQLTLAHAIAQALHRKRLEWAEKENVPMGRMLSNMAIGDI 244
Query: 501 AQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQ 560
A +P + + + ++ H D+ A++ E L+ S G + +
Sbjct: 245 AVKLPTNPKELARMAGVRGSFIRAHGEDLLAVVR-----------ELLEKSRRG-ELAPE 292
Query: 561 QQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 618
++ P DSN +++ L +R A ++ + VL N ++ +A P+D++ +
Sbjct: 293 RESKGPRDSNKRKRE--EALKAFRVEKATERKVTPSVVLTNPLMDALASQPPKDVESL 348
>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
Length = 390
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 33/276 (11%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
L ++ + +++ + ELK+ + IA+D E+H ++ CL+Q +T + D ++D L
Sbjct: 9 LKLVADTDELIKACEELKKGEFIAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPNI 68
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY-- 366
DL +++ D + VKVFH A D++ K G +FD+ A + S++Y
Sbjct: 69 DLAPFLDLMADTSRVKVFHAARQDMEIFTKLIGTPPAPIFDSQVAAMACGL-GDSVSYEN 127
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
L+ DK+ Q DW+ RPL E + YAR D +L + Y +KL G+
Sbjct: 128 LVSQLLKARVDKSSQFTDWQRRPLTEKQLDYARGDVTHLRHCY--VKLKAKLEKLGRMGW 185
Query: 427 V---------LSTF-TNSRNICK-LKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYK 475
+ T+ TN +N K +K KP + Y+ + S + +
Sbjct: 186 IEEETEILVNPDTYDTNPKNAWKRMKIRKP---RKDYLALIAS--------------VSE 228
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
WR+++A++ D+ +L + + ++AQ P D+ +
Sbjct: 229 WREKLAQELDKPRSRILKDDAVQEIAQQKPIDVNAM 264
>gi|375094980|ref|ZP_09741245.1| ribonuclease D [Saccharomonospora marina XMU15]
gi|374655713|gb|EHR50546.1| ribonuclease D [Saccharomonospora marina XMU15]
Length = 402
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 15/274 (5%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YI 300
P TP +++EPEQ+ + L IAID E + Y L+Q+ +
Sbjct: 10 PAGGTP-AVVSEPEQLRRACDRLAAGSGSIAIDTERASGYRYWPRAYLVQLRREGSGTLL 68
Query: 301 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
+D + LR+ LE L VL D V H A D+ L D GL +FDT A +
Sbjct: 69 IDPIPLRDHLEPLGAVLADTEWV--LHAASQDLPCL-ADLGLRPPSLFDTELAGRLAGHE 125
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
R +L L+++ +K DW RPLP + YA D L+ + + KL+ AA
Sbjct: 126 RVALGTLVENLLGYKLEKGHSAADWSKRPLPTDWLNYAALDVELLVPLRE--KLEAELAA 183
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
GK F R +P E + H + + A+R L++ RD +
Sbjct: 184 QGKLEWARQEFEWVRT----SGGQPAPRSEPWRRTSGIHKVRTARGLAAVRALWQARDEL 239
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPR---DIQGI 511
AR +D + +LP+ ++ + PR D+Q +
Sbjct: 240 ARKRDRAPSRILPDSAIINAVLADPRTTADLQAL 273
>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
Length = 399
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 121/264 (45%), Gaps = 9/264 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ IT+ +Q+ + V+ + +AID E+ R Y CL+Q+ T ++ +VD LK+ D
Sbjct: 3 LYITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKV-HD 61
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L +++ D ++VKVFH A D+ L + + +FDT A L Q L+
Sbjct: 62 LSPLRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALLGQTVQVGYGTLV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ C V K DW RPL I YA D YL +Y +L A G+ + +
Sbjct: 122 LNECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIY--RQLTERLEALGRASWLE 179
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + + + + E ++ L+ +Q + + WR+R A +++
Sbjct: 180 HDFAELVDPSRYR-----VDPENRWRHLKNVNQLSGRQLACAKHVAAWRERKAMERNIPR 234
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIF 512
VL + ++++ + PR I +F
Sbjct: 235 KAVLSDVQIVEICRREPRSIDDMF 258
>gi|350559619|ref|ZP_08928459.1| ribonuclease D [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349781887|gb|EGZ36170.1| ribonuclease D [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 381
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 31/275 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + L+ + +A+D E+ ++Y CL+Q++T D VD L L +
Sbjct: 6 LITTDTALRALLDAIAGSHWVAMDTEFIREKTYFPKLCLIQLATPDHIACVDPLAL-GGI 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L+E+L D +++KVFH A D++ L G +FDT A L Q A L++
Sbjct: 65 GALDELLQDSSVLKVFHAASQDLEVLYLVTGKVPSPVFDTQVAASLLGHGEQVGYANLVE 124
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ DKT DW RPL ++YAR D +L ++ ++ +L A
Sbjct: 125 AVLHRELDKTQSRTDWARRPLQPAQLEYARDDVRFLTELFLQLQKELEA----------- 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFR-----------SHALLNNQQKYALRELYKWRD 478
+ +L + +P +R H L + LREL WR+
Sbjct: 174 -------LGRLDWLQPEMEALTRPEQYRPDPAQAWRRVSGHKRLKPRDLAVLRELAAWRE 226
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
AR+ D +VL + LL +A++ P+D+Q + A
Sbjct: 227 NEARNLDRPRRWVLSDDALLTIARTRPQDLQALHA 261
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 534 LKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKY---------ALRELYKWR 584
L+ L++L + ++ LQP ++ + + +Q + P + LREL WR
Sbjct: 167 LQKELEALGR-LDWLQPEMEALTRPEQYRPDPAQAWRRVSGHKRLKPRDLAVLRELAAWR 225
Query: 585 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620
+ AR+ D +VL + LL +A++ P+D+Q + A
Sbjct: 226 ENEARNLDRPRRWVLSDDALLTIARTRPQDLQALHA 261
>gi|209964842|ref|YP_002297757.1| ribonuclease D [Rhodospirillum centenum SW]
gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
Length = 385
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 39/279 (13%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+M+IT + V+ LK + + +D E+ ++Y CL+Q++ D+ +D L
Sbjct: 1 MMLITTTADLAAFVTRLKGAEYVTVDTEFMREKTYWPQLCLVQVAGPDEAAAIDPLAEGM 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL L E+L D ++KVFH A D++ G +FDT A C F S+
Sbjct: 61 DLTPLFELLHDPGVLKVFHAARQDVEIFVHLTGAVPAPLFDTQIAAMVCGF----GDSVG 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH-- 421
Y L+ DK+ + DW RPL E + YA +D +L Y+ ++ L+
Sbjct: 117 YETLITKLTSARIDKSSRFTDWSQRPLTERQLSYALSDVTHLRPAYEKLRRRLAKTGREH 176
Query: 422 --GKQNLVLSTFTNSR-------NICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE 472
++N++L+ R K++ EKP F L+E
Sbjct: 177 WLDEENVILADPATYRVDPEEAWRRLKVRTEKPRF-------------------LAVLKE 217
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ WR+R A+ KD VL + ++++A P ++ +
Sbjct: 218 VAAWREREAQRKDIPRNRVLRDEAIVEIAAHAPTTVEDL 256
>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
Length = 408
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 129/302 (42%), Gaps = 17/302 (5%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I +P + ++V + +A+D E + Y G L+Q+
Sbjct: 12 EPREGIP------PVIEDPAGLARVVRAFAEGTGPVAVDAERASGYRYSGRAYLVQLRRA 65
Query: 296 DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK 355
+ DL L+ VL +V H A D+ L + G + +FDT A +
Sbjct: 66 GAGSALIDPTYCPDLSELDTVLAGAEVV--LHAASQDLPCL-AELGFHPRELFDTELAGR 122
Query: 356 FLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415
L R L ++++ + +K DW RPLPE ++YA D L+ + D + +
Sbjct: 123 LLGYERVGLGMMVENVLGLKLEKGHSAADWSTRPLPEDWLRYAALDVEVLVELRDVLHEE 182
Query: 416 LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYK 475
L + GK F + L Y+ P + + H + + + +REL+
Sbjct: 183 LKTS--GKLAWAQEEFASV-----LAYKSPAPRSDPWRRTSGIHKVRSLRGLAVVRELWT 235
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
RD AR+ D + G VLP+ ++ A +PR + + ++ + H+ D A I +
Sbjct: 236 LRDEFARESDIAPGRVLPDSAIVTAALELPRTTKALTEIPPFTGRSARRHLRDWLAAIGR 295
Query: 536 AR 537
R
Sbjct: 296 GR 297
>gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
Length = 432
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 12/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ + ++D + DL L E L+ + V H A
Sbjct: 66 VAVDAERASGYRYGQRAYLVQLRRQGAGTALIDPVAC-PDLSALGEALS--GVEWVLHAA 122
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L ++ G+ +FDT A + PR L ++++ +K DW RP
Sbjct: 123 TQDLPCL-REIGMLPTRLFDTELAGRLAGFPRVGLGAMVENVLGYVLEKGHSAVDWSTRP 181
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + + ++ +L GK F + + K +
Sbjct: 182 LPEPWLRYAALDVELLVDLRNALEKELD--RQGKLEWARQEFDAIASAPPPEPRKDPWRR 239
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL++ RDRIAR +D S G VLP+ +++ A ++P D +
Sbjct: 240 TSGM-----HKVRRRRQMAVVRELWQTRDRIARRRDLSPGKVLPDAAIVEAALALPADAR 294
Query: 510 GIFA 513
+ A
Sbjct: 295 ALAA 298
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620
+Q +REL++ RDRIAR +D S G VLP+ +++ A ++P D + + A
Sbjct: 248 RRRQMAVVRELWQTRDRIARRRDLSPGKVLPDAAIVEAALALPADARALAA 298
>gi|336177812|ref|YP_004583187.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
gi|334858792|gb|AEH09266.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
Length = 474
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 14/243 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A D E + Y L+QI R +++D + L DL + + + D V H A
Sbjct: 57 VAFDAERASGYRYSQRAYLVQIRRRGSGTHLLDPVAL-ADLTCVQDAVGDAEWV--LHAA 113
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
+ D+ L + GL +FDT A + L R L +++ +K DW RP
Sbjct: 114 NQDLPCL-AEVGLRPSRLFDTELAGRLLGYERVGLGIMVEKVLGFTLEKGHSAADWSTRP 172
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L GK F + P
Sbjct: 173 LPEPWLRYAALDVELLVELRDALETELE--TQGKLAFAREEF------AAIAAAPPREPR 224
Query: 450 EG-YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
G + H + N +Q A+R ++ RDRIAR++D + G VLP+ +++ + P DI
Sbjct: 225 PGLWRRTSGIHRVRNRRQLAAVRSMWTTRDRIARERDIAPGRVLPDSAIIEAVLAAPADI 284
Query: 509 QGI 511
+ +
Sbjct: 285 EAL 287
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 618
N +Q A+R ++ RDRIAR++D + G VLP+ +++ + P DI+ +
Sbjct: 239 NRRQLAAVRSMWTTRDRIARERDIAPGRVLPDSAIIEAVLAAPADIEAL 287
>gi|405355820|ref|ZP_11024932.1| Ribonuclease D [Chondromyces apiculatus DSM 436]
gi|397091092|gb|EJJ21919.1| Ribonuclease D [Myxococcus sp. (contaminant ex DSM 436)]
Length = 378
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 166/359 (46%), Gaps = 26/359 (7%)
Query: 264 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIV 323
+L+Q +EIA+DLE + +++ C +Q++T + +++DTL+ ++L ++ D
Sbjct: 12 QLEQAREIAVDLEADSMHAFRARLCFLQLATDAEVFLLDTLQPGVVPDMLAPLMADPART 71
Query: 324 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF 383
K FH A D+++L + G+ V G+FDTH+A L P+ LA L + V+ K Q
Sbjct: 72 KFFHAAQGDLQFL-AEVGVRVQGLFDTHRAATLLGWPKVGLADLARERLGVELPKEHQQS 130
Query: 384 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE 443
D+ RPLP +Y D YL + ++ A + +++ + +C
Sbjct: 131 DFSIRPLPPGMREYIANDVRYLCELGRQVR-----DACREADILEEVLLDCVRMCDEAAA 185
Query: 444 KPVFNEEGYMNIFRSHALLNNQQ---KYALRE-LYKWRDRIARDKDESTGYVLPNHMLLQ 499
+P + + RS LN Q +A+ + L++ R A ++ G +L N L
Sbjct: 186 RPDVGADYKPKLPRSG--LNPTQLTLAHAIAQVLHRKRLEWAEKENVPMGRMLSNMALGD 243
Query: 500 MAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQ 559
+A +P + + V+ H ++ A++ E+L+ S G +
Sbjct: 244 IAAKLPTTQKELARMAGVRGSFVRTHGDELLALVR-----------EQLEKSRRG-ELAP 291
Query: 560 QQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 618
+++ P D+N +++ L +R A ++ + VL N ++ +A P+D++ +
Sbjct: 292 EREAKGPRDTNKRKRE--EALKTFRVEKATERKVTPSVVLTNPLMEALAAKPPQDVEAL 348
>gi|442323525|ref|YP_007363546.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
gi|441491167|gb|AGC47862.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
Length = 389
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 161/370 (43%), Gaps = 28/370 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + E + +L+Q +E+A+DLE + +++ C +Q++T +++DTL+ +
Sbjct: 11 VVDTEGAQSALGKLEQARELAVDLEADSMHAFRARLCFLQVATDSDVFLLDTLQPGVEAR 70
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHY 371
+L ++ + K FH A D+++L + G+ V G+FDTH+A L P+ LA + +
Sbjct: 71 LLAPLMGEPGRTKYFHAAQGDLQFL-AEAGVRVRGLFDTHRAATLLGWPKVGLADIAREK 129
Query: 372 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
V+ K Q D+ RPLP Y D YL + ++ A + ++
Sbjct: 130 LGVELPKEHQQSDFSLRPLPPGMRDYIANDVRYLCELGRQVR-----EATREAGILEEVE 184
Query: 432 TNSRNICKLKYEKPVFNEEGYMNIFRS-----HALLNNQQKYALRELYKWRDRIARDKDE 486
+ +C +P + + RS L N +A L+K R A ++
Sbjct: 185 LDCERLCDEAVARPDVGADFKPKLPRSGLSPAQMTLANAIAHA---LHKKRLEWAEKENV 241
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
G +L N + +A +P + + V+ H ++ AI+ R Q
Sbjct: 242 PMGRMLSNMAIADIATRLPSSPRDLARAAGVRGSFVRTHGDEVLAIL---REQQEKARNG 298
Query: 547 KLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 606
+LQP +++ P DSN +++ L +R A ++ + +L N ++
Sbjct: 299 ELQP---------ERENKGPKDSNRRKRE--DALKAFRVEKATERKVTPSVILTNPLMDA 347
Query: 607 MAQSIPRDIQ 616
+ PRD++
Sbjct: 348 LLSQPPRDLE 357
>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED----LEVLNEVLTDKNIVKVF 326
I +D+E+ N + G ++QI + YI+D +++ D + V ++ D I+KVF
Sbjct: 60 IGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIKVF 119
Query: 327 HGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTF----QL 382
+ +D+ WL++DF + + FD + + + SL +L K YCD K++ Q
Sbjct: 120 YAGSTDVLWLKRDFQITIQNFFDIKEVADECKLSKISLIFLWKQYCDHQVSKSYKTNMQT 179
Query: 383 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
DW RPL + + YA D +YL Y+ + +LS A
Sbjct: 180 SDWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELSKA 216
>gi|455644936|gb|EMF24027.1| ribonuclease D [Streptomyces gancidicus BKS 13-15]
Length = 388
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 13/265 (4%)
Query: 251 MITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
M+ + + ++V+ + +A+D E + Y L+Q+ ++D +
Sbjct: 1 MVADESALAEVVAAFAAGRGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-P 59
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L E L+ + V H A D+ L ++ G+ +FDT A + PR L ++
Sbjct: 60 DLSALGEALS--GVEWVLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMV 116
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
++ +K DW RPLPEP ++YA D L+ + D ++ +L GK +
Sbjct: 117 ENVLGFLLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELD--RQGKLDWAW 174
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F I +P ++ + H + +Q +REL++ RDRIAR +D S
Sbjct: 175 QEFD---AIASAPPPEP--RKDPWRRTSGMHKVRRRRQMAVVRELWQTRDRIARRRDVSP 229
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFA 513
G VLP+ +++ A ++P + + A
Sbjct: 230 GKVLPDAAIVEAALAMPANPHALAA 254
>gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755]
gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755]
Length = 388
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 17/265 (6%)
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ Q+ ++ +Q IA+D E+ R+Y L+Q+ + Y++D L + D +L
Sbjct: 29 LAQMCLQVAEQSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT-DFSPFTALL 87
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDS 376
T++N++KV H D++ Q F M DT F+ + A L HY +V+
Sbjct: 88 TNENVLKVLHACSEDLEVFQHYFKQLPQPMLDTQVMAGFVGIGISIGFAKLALHYLEVEL 147
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL---STFTN 433
DK DW RPL E +QYA D YLL +Y + DL+ Q V+ +T
Sbjct: 148 DKGASRTDWLSRPLSEIQLQYACADVWYLLPIYHKLAEDLAKTLW--QTAVVEECATLLA 205
Query: 434 SRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKWRDRIARDKDESTGYVL 492
R I E P + Y I S+A NQQ+ A L+ L KWR A +D + +++
Sbjct: 206 KRQIV----EDP---NKVYKEI--SNAWQLNQQELAILQILAKWRIEEAEKRDLALNFII 256
Query: 493 PNHMLLQMAQSIPRDIQGIFACCNP 517
LLQ+A+ P+ + +P
Sbjct: 257 KEQSLLQIAKLQPKHTSILLEFMHP 281
>gi|372271279|ref|ZP_09507327.1| ribonuclease D [Marinobacterium stanieri S30]
Length = 393
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 10/280 (3%)
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLM 290
D L+C + K+ + +P + I + Q+ Q +A+D E+ ++ L+
Sbjct: 3 DLLQCYDWKRLEQAASSP-VHIRDNAQLKACAERWLTQPVLALDTEFMRTETFYPIPGLI 61
Query: 291 QISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
Q++ + Y+VD L++ +D L +VL+ +++KV H D++ + +G+ ++DT
Sbjct: 62 QVADDEACYLVDPLEV-DDFAPLAQVLSCPDVLKVVHAGSEDMELFRHSYGVLPSPLYDT 120
Query: 351 HQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
F L L+ H DV+ DK DW RPL +YA D YL +
Sbjct: 121 QVGAAFAGWGFSMGLRRLVAHALDVELDKEETTSDWLQRPLTPEQERYAALDVAYLPTLA 180
Query: 410 DCMKLDLSAAAHGKQNLVLSTFTN-SRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY 468
+ +L G+ + +N+ +L P E Y F ++ ++
Sbjct: 181 LMQRHELEQ--KGRLSWAEEACAEVGQNVAELDEADP----ETYFQRFSQAWHFDDVRRA 234
Query: 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
ALR+L WR+R R +D S +L N +LL++A+ +P+ I
Sbjct: 235 ALRDLSAWRERTCRKRDLSRNRLLRNQVLLEVAERLPQTI 274
Score = 39.7 bits (91), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 561 QQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
Q+ S ++ ++ ALR+L WR+R R +D S +L N +LL++A+ +P+ I
Sbjct: 220 QRFSQAWHFDDVRRAALRDLSAWRERTCRKRDLSRNRLLRNQVLLEVAERLPQTI 274
>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
Length = 372
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 15/302 (4%)
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ ++V+++ +AID E+ ++ L+QI+T D+ +++D L L D L E+L
Sbjct: 12 LAEVVAQVIDGDFVAIDTEFRRRDTFWPEVALVQIATADQVWLIDPLPL-TDTGPLAELL 70
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDS 376
+ KV H A D++ Q G+ +FDT +A L S A L++ C V
Sbjct: 71 QKSTLTKVLHSAGEDLEVFQAWLGVLPSPLFDTQKAAALLGYGFGLSYAKLVEAVCQVSL 130
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN 436
DK DW RPL +YA D YL+ VY + D A G+ +L
Sbjct: 131 DKDETNSDWLVRPLTSAQCRYAAQDVTYLVDVYSRLLGD--AGTQGRLEWILE------- 181
Query: 437 ICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 496
+ E G + FR+ L + L L WR++ AR++D ++L + +
Sbjct: 182 ----EGEGVSVGGRGPLAKFRNAWKLQPEALAVLYGLLDWREQQARERDRPRNWILHDKV 237
Query: 497 LLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMK 556
+ ++ +++P + + V+ + A+I AR + +KP E + L G +
Sbjct: 238 INEIVRALPERLDQLAGLEGMSEGVVRRQGKALLALIAAARRDASSKPPEPVAQPLSGTQ 297
Query: 557 KK 558
K+
Sbjct: 298 KR 299
>gi|410616461|ref|ZP_11327453.1| ribonuclease D [Glaciecola polaris LMG 21857]
gi|410164170|dbj|GAC31591.1| ribonuclease D [Glaciecola polaris LMG 21857]
Length = 385
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 12/282 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT E + ++L + Q IA+D E+ R+ L+QI + ++D L++ D
Sbjct: 6 ITTDEALNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGLQIALIDPLEI-NDFS 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM-PRQSLAYLLKH 370
L ++LTD NIVKV H DI+ + +FD+ A M P A L++
Sbjct: 65 ALKDILTDGNIVKVLHSCSEDIETFICALNIVPSPIFDSQFAAAITGMGPSLGYAKLVET 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
V DK DW RPL QYA D YL +Y ++ A +Q V
Sbjct: 125 MLGVQVDKGESRTDWLARPLSPEQCQYAAYDVLYLFQLYPALRD--KTIAQDRQAWV--- 179
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
F N+ + K + + + Y+NI +++ + + Y L++L WR + A+ +D + +
Sbjct: 180 FAEMDNLVR-KKQSHIPYDLLYLNI-KNNWHVTGKSLYVLQQLTAWRAKEAQQRDLALNF 237
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
V+ LL++A+++P + PQ ++ + +LDI
Sbjct: 238 VVREANLLEVAKNLPTSRNALHQIAGLTPQEIRINGQAMLDI 279
>gi|358460925|ref|ZP_09171099.1| 3'-5' exonuclease [Frankia sp. CN3]
gi|357074601|gb|EHI84090.1| 3'-5' exonuclease [Frankia sp. CN3]
Length = 438
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 12/238 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYI-VDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A D E + Y L+QI R + +D + L DL VL E + + V H A
Sbjct: 46 VAFDAERASGYRYSQRAYLVQIRRRGSGTVLIDPVTL-PDLTVLQEKVGECEWV--LHAA 102
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + L R L +++ +K DW RP
Sbjct: 103 SQDLPCL-AELGLRPTRLFDTELAGRLLGYERVGLGMMVERVLGFGLEKGHSAADWSTRP 161
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D + +L+ GK L F I +P
Sbjct: 162 LPEPWLRYAALDVELLVELRDALTAELT--ETGKLEFALQEFA---AIAAAPPREP--RA 214
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
E + H + +Q A+R ++ RD+IAR +D + G VLP+ ++ S P D
Sbjct: 215 EPWRRTSGIHRARSRRQLAAVRSMWTARDKIARVRDIAPGRVLPDSAIIDAVLSAPAD 272
>gi|333892430|ref|YP_004466305.1| ribonuclease D [Alteromonas sp. SN2]
gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2]
Length = 385
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 11/289 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T E++ + + +QQ+ +A+D E+ R+ + L+Q+ + ++D L + +DL
Sbjct: 5 LVTTFEKLDSVCNLAQQQKAVALDTEFVRTRTLSPHLGLIQLYDGHQLVLIDPLAI-DDL 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
++ + +VKV H D++ F +FD+ A L + SL Y L+
Sbjct: 64 SPFIALMENTRVVKVLHSCSEDLETFLTAFNTVPTPVFDSQFAASILGLG-ASLGYAKLV 122
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ CDV DK DW RPL E + YA D YLL Y+ + ++ A GK V
Sbjct: 123 ELLCDVSLDKGESRTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKINEA--GKLEWVY 180
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+ K + + P E YM I +++ L+ +Q L+ L WR AR KD +
Sbjct: 181 QEIAQLAD--KKRSQMP--EEFAYMQI-KNNWRLSKEQLTVLQALAAWRLATARKKDMAL 235
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+V L + A+ +P G+ PQ+++ + I +I +AR
Sbjct: 236 NFVFKEIHLYEAARLMPSSKSGLSQLHGVNPQSIRRYGETIITLISEAR 284
>gi|295835905|ref|ZP_06822838.1| ribonuclease D [Streptomyces sp. SPB74]
gi|295825772|gb|EFG64472.1| ribonuclease D [Streptomyces sp. SPB74]
Length = 430
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 115/271 (42%), Gaps = 19/271 (7%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I +PE + V+ +A+D E + Y L+Q+
Sbjct: 39 EPREGIP------PVIADPESLADAVAAFAGGSGPVAVDAERASGYRYGQRAYLVQLRRA 92
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L L H A D+ L ++ G+ +FDT A
Sbjct: 93 GAGTALIDPVAC-PDLSGLGAALASAEWD--LHAATQDLPCL-REIGMVPHTLFDTELAG 148
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 149 RLAGFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 208
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK L F K + M H + +Q +REL+
Sbjct: 209 ELD--RQGKLEWALEEFDAIATAPPPAPRKDPWRRTSGM-----HRVRRRRQLAVVRELW 261
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
RDRIAR +D S G VLP+ +++ A ++P
Sbjct: 262 TLRDRIARRRDVSPGKVLPDAAIVEAALAVP 292
>gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E]
gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E]
Length = 380
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 158/352 (44%), Gaps = 32/352 (9%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
M+IT+ E + + + + IA+D E+ RSY L+Q+ ++ ++D ++ +
Sbjct: 14 FMLITDDEALADVCARASTKSAIALDTEFVRIRSYYPKLGLIQLYDGEQVSLIDPQEI-Q 72
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR-QSLAYL 367
D ++L D I+KV H D++ Q + M DT FL LA L
Sbjct: 73 DFSPFKQLLADPKILKVLHACHEDLEVFQHYYQQLPAPMLDTQIMANFLGFQNSMGLASL 132
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-----AAAHG 422
+KHY +++ DK DW RPL + YA D YLL +Y M+ L +A
Sbjct: 133 IKHYFNLEIDKGASRTDWLARPLSNRQLAYAAADVWYLLPLYCKMQNALEQTRWQSAVEF 192
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
NL+L +NI ++ Y++I + LN+++ L+ L WR A
Sbjct: 193 DCNLLLEKHRIVKNI-----------DKAYLSISGAWK-LNSEELMRLKLLASWRQEEAV 240
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA-RLQSL 541
+D + +V+ L +AQ+ P+ + PQ V+ H + I+ +A R+ +
Sbjct: 241 KRDLALNFVVRGENLWLLAQNNPKHTSEMLK-LGLNPQEVRIHGKKMLQILERAERIDAE 299
Query: 542 TKPVEKLQPSLD-----GMKKKQQ--QQVSPPHDSNNQ---QKYALRELYKW 583
P E + + D G+K QQ + ++PP D N + K +L L KW
Sbjct: 300 YYPPEISRLADDMRYKQGLKNLQQKLKTIAPP-DLNAEVIAGKRSLESLMKW 350
>gi|416062030|ref|ZP_11581335.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|347997354|gb|EGY38357.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
Length = 370
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
M+T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 1 MVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQVALIDPLPI-QDF 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D N+VK+ H D+ Q+ F M DT FL + A L++
Sbjct: 60 SPFIELLADTNLVKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFLGFAGSTGFATLVQ 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y M +Q L +
Sbjct: 120 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYGQM----------QQQLTQT 169
Query: 430 TFTNS-RNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+ ++ N C+ K + Y I + LN + L+ L KWR A +
Sbjct: 170 EWQSAVENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKR 228
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D + +V+ L Q+A+S P+ I +
Sbjct: 229 DLALNFVVRAENLWQVAKSNPKHISTL 255
>gi|386390385|ref|ZP_10075174.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
gi|385693110|gb|EIG23765.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
Length = 372
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 121/262 (46%), Gaps = 15/262 (5%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ + +Q+ ++ +Q +A+D E+ R++ L+Q+ + ++D + ED
Sbjct: 8 LWVENEQQLAEVCQNARQVPAVALDTEFIRERTFYPKLGLIQLFDGKQVSLIDPTTI-ED 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLL 368
+L D+N++KV H D++ + F + DT FL + A L+
Sbjct: 67 FSPFIALLADQNVIKVLHACSEDLEVFECSFNQLPTPLVDTQVMANFLNLGISVGFAKLV 126
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV- 427
HY D++ DK DW RPL E +QYA D YLL +Y M+ +L A QN V
Sbjct: 127 LHYLDIELDKGASRTDWLARPLSETQLQYATADVWYLLPIYQKMQTEL--AQTNWQNAVN 184
Query: 428 --LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S F R E+ ++ Y+ I + L QQ L+ L KWR AR ++
Sbjct: 185 EECSAFLTKR-------EREDDLDKAYIKISNAWR-LEPQQLAVLKLLAKWRVEEARSRN 236
Query: 486 ESTGYVLPNHMLLQMAQSIPRD 507
+ +V+ L ++A+ +P++
Sbjct: 237 LALNFVVKEASLYEIARILPKN 258
>gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
Length = 427
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 10/246 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E + Y L+Q+ + DL L VL D V H A+
Sbjct: 52 VAVDAERASGYRYGQRAFLVQLRREGAGTALIDPDALPDLSSLGAVLADAEWV--LHAAN 109
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
D+ L + G+ +FDT + +PR L +++ + K DW RPL
Sbjct: 110 QDLPCL-AEVGMRPTRLFDTELGSRIAGLPRVGLGAVVEELLGLRLAKEHSAVDWSTRPL 168
Query: 391 PEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE 450
PEP + YA D L+ V D + L AA GK L F + E
Sbjct: 169 PEPWLTYAALDVEVLVQVRDALAERL--AAQGKLEWALEEFAAVADAPAPVPPA-----E 221
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + HA+ + +Q +R L++ RD AR +D S G +LP+ ++ A++ PR Q
Sbjct: 222 PWRRVSGLHAVRSRRQLAVVRALWQARDEEARRRDTSPGRLLPDSAIVAAARATPRTPQA 281
Query: 511 IFACCN 516
+ +
Sbjct: 282 LASTSG 287
>gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31]
gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31]
Length = 389
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 117/260 (45%), Gaps = 26/260 (10%)
Query: 261 LVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK 320
+ELK Q IA+D E+ +Y CL+Q+++ D + +D L DLE L E+L D
Sbjct: 13 FCNELKGQPFIAVDTEFMRETTYWPKLCLIQVASPDIEACIDPLAEGMDLEPLLEILRDP 72
Query: 321 NIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDK 378
++KVFH A D++ + + +FDT A Q +AY L++ ++ DK
Sbjct: 73 GVLKVFHAARQDVE-IFNNLNAMPTPLFDTQVAGMAAGFGEQ-IAYDALVRQMLKIELDK 130
Query: 379 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNIC 438
+ + DW RPL + + YA D +L ++ ++ L A +
Sbjct: 131 SSRFTDWARRPLSDAQLTYAVADVTHLATLFPILRERLEKAGR---------------LA 175
Query: 439 KLKYEKPVFNEEGYMNI-----FRSHALLNNQQKY--ALRELYKWRDRIARDKDESTGYV 491
++ E N+ ++ +R KY + + WR+R A+ +D+ G +
Sbjct: 176 WVEEEMKALNDPAAYDVDPEKAWRRLRPRKTGSKYLAVFKAVAAWRERTAQTRDQPRGRI 235
Query: 492 LPNHMLLQMAQSIPRDIQGI 511
L + + ++A P ++G+
Sbjct: 236 LKDEAIDELATQAPTSLEGL 255
>gi|410635757|ref|ZP_11346365.1| ribonuclease D [Glaciecola lipolytica E3]
gi|410144840|dbj|GAC13570.1| ribonuclease D [Glaciecola lipolytica E3]
Length = 382
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 136/315 (43%), Gaps = 13/315 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT E + + IA+D E+ R+ L+QI +VD L + EDL
Sbjct: 5 LITTFEALNSFCIQASNAPAIAVDTEFVRTRTLYPRLGLIQIYDGVTLVLVDPLGI-EDL 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTH-QACKFLPMPRQSLAYLLK 369
L +LT+ N+VKV H D++ + +FDT AC A L++
Sbjct: 64 SPLANLLTNPNVVKVLHSCSEDLETFWHSLNVIPNPIFDTQFAACLLNKGATLGYAALIE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+ DK DW RPL E QYA D YL VY +L A G+ V
Sbjct: 124 LMLDIKLDKGESRTDWIARPLSEQQCQYAANDVLYLFQVYP--ELHEQIEALGRTEWVYQ 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
LK + + Y+NI +++ L+ Y L++L KWR AR +D +
Sbjct: 182 EMQQ----LALKKSVNLPADLAYLNI-KNNWKLSGLSLYVLKQLAKWRIEQARIRDLALN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT---KPVE 546
+V+ L+++A ++P IFA PQ + H + +++ +A+ S PVE
Sbjct: 237 FVVRESNLVEIALTLPTHKGAIFAIDGMTPQEARIHGDVLLSLVEEAKNASAEVYPAPVE 296
Query: 547 KLQPSLDGMKKKQQQ 561
+L G KK +
Sbjct: 297 RLMTH-KGFKKASAE 310
>gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
Length = 383
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 12/271 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ + +T L L + + +D E+ R+Y CL+Q+++ ++ I+D L DL
Sbjct: 3 IVTQTQDLTALCGRLAKHDFVTVDTEFMRERTYYPKLCLIQVASTEEAAIIDPLAAALDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
E+L D +++KVFH A D++ K G +FDT A Q + Y L+
Sbjct: 63 APFLELLADPSVLKVFHAARQDLEIFYKLMGKVPAPLFDTQIAAMACGHGDQ-VGYEALI 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ DK + DW RPL + + YA D +L+ Y + +L G+ +
Sbjct: 122 REVTGAQVDKGSRFTDWAKRPLSDKQLTYALGDVTHLVDAYQALITELE--EKGRLEWIH 179
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+ T N L Y P +E + I + L + + L+ + WR+R A +D
Sbjct: 180 AEMTQL-NDPTLYYTDP---DEAWRRIKVRN--LKQRDRALLKAVAAWREREAIARDTPR 233
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVP 519
V+ + L+++ ++ P+D Q + A +P
Sbjct: 234 NRVMKDDGLMEIVRTKPKDAQEL-AALRAIP 263
>gi|431928090|ref|YP_007241124.1| ribonuclease D [Pseudomonas stutzeri RCH2]
gi|431826377|gb|AGA87494.1| ribonuclease D [Pseudomonas stutzeri RCH2]
Length = 374
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + E +T L +E +Q +A+D E+ ++ L+Q+ + Y++D L + D
Sbjct: 8 VLDDEHLTHLCAEWRQLPYVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV-HDWS 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
VL D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 AFAAVLQDNAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL + +QYA D +L +Y+ + LS K+ VL
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSDMQVQYAAEDAQHLAELYEALLPKLS---EDKRAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E EE Y + ++ L QQ L+ L WR+R AR +++
Sbjct: 183 D--GAELVANLQRESD--PEEAYREVKQAWRL-KPQQLAVLKVLTAWRERQARARNQPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
VL L +A++ PRD+ + + P+TV++
Sbjct: 238 RVLREASLWPLARTQPRDLVTLARIEDMHPRTVRQ 272
>gi|414341731|ref|YP_006983252.1| ribonuclease D [Gluconobacter oxydans H24]
gi|411027066|gb|AFW00321.1| ribonuclease D [Gluconobacter oxydans H24]
gi|453329592|dbj|GAC88242.1| ribonuclease D [Gluconobacter thailandicus NBRC 3255]
Length = 400
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)
Query: 245 SDTPL-MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
SD P +++T E+V +L ++LKQ+ + ID E+ ++Y CL+Q++ + ++DT
Sbjct: 6 SDFPSPVIVTSSEEVARLCNKLKQEPFVTIDTEFVREKTYWPELCLVQLAGEEDVAVIDT 65
Query: 304 LKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
L DL L E+L + +KVFH A D++ F +FDT A Q
Sbjct: 66 LAPGIDLAPLGELLDEPGCIKVFHAARQDLEIFLHIFDRLPQSLFDTQVAAMVAGFGDQ- 124
Query: 364 LAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
+ Y L+ DK + DW RPL + I YA D +L VY ++ L
Sbjct: 125 VGYDSLVGAITGQAIDKAHRFSDWSARPLTKAQIAYAAADVTHLRTVYLALRQQLEDEGR 184
Query: 422 GK----QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKW 476
+ + VL++ R + +EK A NN++ LRE+ W
Sbjct: 185 LRWADAEQAVLTSEETFRPDPRRLWEK-------------LKARTNNRRMLGILREIVAW 231
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
R++ A++ D V+ + LL++A P I+ +
Sbjct: 232 REQEAQNADIPRQRVIRDESLLEIAAIKPNSIEAL 266
>gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46]
gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46]
Length = 394
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 34/275 (12%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLRED 309
+IT + +T + L Q + +D E+ +Y CL+QI+ D +VD L D
Sbjct: 3 LITSTDDLTSACAHLSTQPFVTVDTEFMRETTYYPKLCLIQIAAPDGTTALVDPLAPGID 62
Query: 310 LEVLNEVLTDKNIVKVFHGA--DSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSL 364
L ++ D+ ++KVFH A D +I WLQ GL FDT A C + S+
Sbjct: 63 LAPFFALMGDEGVLKVFHSARQDLEIIWLQG--GLLPQPFFDTQVAAMVCGY----GDSV 116
Query: 365 AY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
+Y L+ DK+ + DW RPL E + YA +D +L+ VY+ + L A+ G
Sbjct: 117 SYEQLVNDVAKAKVDKSSRFTDWSRRPLSEAQLTYALSDVTHLIKVYEALARQLLASDRG 176
Query: 423 ----KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA--LLNNQQKYALRELYKW 476
++ VL++ P E +R A + ++ L E+ W
Sbjct: 177 AWLDEEMAVLTS--------------PETYEADPAQAWRRLAGRMRKPREIAVLMEVAAW 222
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
R+R A+ ++ G +L + +L +A + PR I+ +
Sbjct: 223 REREAQGRNVPRGRILKDEAVLDVATAAPRSIEAL 257
>gi|347760629|ref|YP_004868190.1| ribonuclease D [Gluconacetobacter xylinus NBRC 3288]
gi|347579599|dbj|BAK83820.1| ribonuclease D [Gluconacetobacter xylinus NBRC 3288]
Length = 395
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 13/265 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++IT ++ + + L+ + + ID E+ R+Y CL+Q++ +D ++DT D
Sbjct: 13 VLITTTAELEAVTTRLRGEPFVTIDTEFVRERTYWPELCLVQLAGKDDVVVIDTTAPGID 72
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L E+L D +VKVFH A D++ F +FDT Q + + Y L
Sbjct: 73 LSSLGELLDDAGVVKVFHAARQDLEIFLHLFDRLPAALFDT-QVAAMVAGHGDQVGYDNL 131
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ V DK+ + DW RPL I YA D YL VYD KL G+ V
Sbjct: 132 VWSLLGVQIDKSHRFSDWSARPLSPAQIGYAAADVTYLRLVYD--KLLTQLQQEGRLEWV 189
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKWRDRIARDKDE 486
+ N F + + + NN++ LR + WR+ A+ +
Sbjct: 190 AAELDVLNN-------PATFRPDPFTLWEKMRPRTNNRRMLGILRAIVAWREGEAQRINV 242
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGI 511
+L + L+++A ++P I+ +
Sbjct: 243 PRQRLLKDESLMEIAATMPATIEAL 267
>gi|408528598|emb|CCK26772.1| ribonuclease [Streptomyces davawensis JCM 4913]
Length = 382
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 13/268 (4%)
Query: 251 MITEPEQVTQLVSEL-KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
MI + E + ++++ +A+D E + Y L+Q+ + ++D +
Sbjct: 1 MIADEESLARVIAAFDAGSGPVAVDAERASGYRYGQRAYLVQLRRQGAGTALIDPVAC-P 59
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L EVL D V H A D+ L ++ G+ +FDT A + PR L ++
Sbjct: 60 DLSGLGEVLADAEWV--LHAATQDLPCL-REIGMIPSRIFDTELAGRLAGFPRVGLGPMV 116
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
++ +K DW RPLPEP ++YA D L+ + D ++ +L GK
Sbjct: 117 ENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELD--RQGKLEWAR 174
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F I +P +E + H + +Q +REL++ RDRIA+ +D S
Sbjct: 175 QEFD---AIASAPPPEP--RKEPWRRTSGMHKVRRRRQLGVVRELWETRDRIAQRRDVSP 229
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCN 516
G VL + +++ A +P ++ + A
Sbjct: 230 GKVLSDAAIVEAALGLPANVHALSALSG 257
>gi|422336336|ref|ZP_16417309.1| ribonuclease D [Aggregatibacter aphrophilus F0387]
gi|353346522|gb|EHB90807.1| ribonuclease D [Aggregatibacter aphrophilus F0387]
Length = 394
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 18/268 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ITE E + ++ + QQ +A+D E+ R++ L+Q+ D+ ++D + +D
Sbjct: 25 LITEDESLAEVCALAGQQSAVALDTEFVRTRTFYPKLGLIQLYAGDEVALIDPTTI-QDF 83
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + KV H + D++ Q F M DT FL A L+K
Sbjct: 84 SPFIALLADERVTKVLHASGEDLEVFQHYFQQLPQPMCDTQVVANFLGFANSPGFATLVK 143
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-----AAAHGKQ 424
HY ++ DK DW RPL + +QYA D YLL +Y MK L+ +A +
Sbjct: 144 HYFQIEIDKGASCTDWLARPLSDTQLQYAAADVWYLLPLYQQMKAQLAQTEWQSAVENEC 203
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+L+ + +Y + EE Y I + LN+ + L+ L KWR + A +
Sbjct: 204 EFLLNK--------RAQYARD--PEEAYFAIPNAWK-LNSLELMRLKLLAKWRMQEAMRR 252
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGIF 512
D + +V+ L +A+ P+ +
Sbjct: 253 DLTLNFVVHAENLWTVAKHDPKSTSALL 280
>gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
Length = 385
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 18/268 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ITE E + ++ + QQ +A+D E+ R++ L+Q+ D+ ++D + +D
Sbjct: 16 LITEDESLAEVCALAGQQSAVALDTEFVRTRTFYPKLGLIQLYAGDEVALIDPTTI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + KV H + D++ Q F M DT FL A L+K
Sbjct: 75 SPFIALLADERVTKVLHASGEDLEVFQHYFQQLPQPMCDTQVVANFLGFANSPGFATLVK 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-----AAAHGKQ 424
HY ++ DK DW RPL + +QYA D YLL +Y MK L+ +A +
Sbjct: 135 HYFQIEIDKGASCTDWLARPLSDTQLQYAAADVWYLLPLYQQMKAQLAQTEWQSAVENEC 194
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+L+ + +Y + EE Y I + LN+ + L+ L KWR + A +
Sbjct: 195 EFLLNK--------RAQYARD--PEEAYFAIPNAWK-LNSLELMRLKLLAKWRMQEAMRR 243
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGIF 512
D + +V+ L +A+ P+ +
Sbjct: 244 DLTLNFVVHAENLWTVAKHDPKSTSALL 271
>gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG]
gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF]
Length = 431
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 121/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I +PE + V+ +A+D E + Y L+Q+
Sbjct: 39 EPREGIP------PVIADPESLAAAVAAFASGSGPVAVDAERASGYRYGQRAYLVQLRRA 92
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L L N H A D+ L ++ G+ +FDT A
Sbjct: 93 GAGTALIDPVAC-PDLSGLGAALA--NAEWDLHAATQDLPCL-REIGMVPHSLFDTELAG 148
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 149 RLAGFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 208
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK L F + K + M H + +Q +REL+
Sbjct: 209 ELE--RQGKLEWALEEFDAIASAPPPAPRKDPWRRTSGM-----HRVRRRRQLAVVRELW 261
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
RDRIAR +D S G VLP+ +++ A ++P ++ + A
Sbjct: 262 TLRDRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGA 300
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620
+Q +REL+ RDRIAR +D S G VLP+ +++ A ++P ++ + A
Sbjct: 250 RRRQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGA 300
>gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016]
gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016]
Length = 390
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 9/253 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ITE + + ++ S+ ++ + +D E+ R+Y L+Q+ D ++D L D+
Sbjct: 24 IITENQDLARVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDSLSLIDPTVL-TDM 82
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D +++KV H D++ FG V M DT FL + A L++
Sbjct: 83 SAFTELLNDASVMKVLHACGEDLEVFHNAFGAMPVPMVDTQIMAAFLGHGLSTGFAALVE 142
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +V+ DK+ DW RPL + ++YA D HYLL +Y+ + + AA + S
Sbjct: 143 QYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMAAGWWQAAQQES 202
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
S+ + K + Y++I + L ++ L+ L WR + A +D +
Sbjct: 203 ELQASKRV------KTPNADNAYLDI-KGAWQLKPRELAILKPLATWRMQEAIRRDLALN 255
Query: 490 YVLPNHMLLQMAQ 502
+V H LL +A+
Sbjct: 256 FVFKEHDLLTVAR 268
>gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3]
Length = 369
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 11/299 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + LV++ ++ + + ID E+ R+Y L+Q ++D L + +L
Sbjct: 7 IDDDTSLAALVAQYREAKLLVIDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAV-TNLS 65
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+ +LTD +I+K+ H D++ K+ +FD+ A M L Y L++
Sbjct: 66 LFWALLTDSSIIKLLHSCSEDLEVFAKNGACQPNKLFDSQIAAGLCGMG-YGLGYAKLVE 124
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+ DK DW RPL E + YA D +YL +Y + L + G+ + V
Sbjct: 125 QTLDITLDKGESRTDWLKRPLSEAQLNYAANDVYYLYELYPQLVDKLES--QGRLDWV-- 180
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + + + + + P E Y+ + + LL Q L+ L KWR + A KD + G
Sbjct: 181 -YEDGERMTQGRLDAPD-PEVAYLKVKNAFQLLPRQLA-VLKALAKWRLKRALIKDLALG 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
+V+ +H L+ +A+ +P++ ++ Q + H ++ II + L KP++ L
Sbjct: 238 FVVKDHALIALAKKMPKNSNDLYKLTELTEQEKRIHGKELVKIIANVSFEELPKPLDVL 296
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 550 PSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 609
P + +K K Q+ P +Q L+ L KWR + A KD + G+V+ +H L+ +A+
Sbjct: 197 PEVAYLKVKNAFQLLP------RQLAVLKALAKWRLKRALIKDLALGFVVKDHALIALAK 250
Query: 610 SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKL 655
+P++ ++ Q + H ++ II + L KP++ L
Sbjct: 251 KMPKNSNDLYKLTELTEQEKRIHGKELVKIIANVSFEELPKPLDVL 296
>gi|359298919|ref|ZP_09184758.1| ribonuclease D [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305636|ref|ZP_10824695.1| ribonuclease D [Haemophilus sputorum HK 2154]
gi|400376749|gb|EJP29636.1| ribonuclease D [Haemophilus sputorum HK 2154]
Length = 370
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 123/272 (45%), Gaps = 9/272 (3%)
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
P + + E++ ++ +Q++ +A+D E+ R++ L+Q+ ++D K+
Sbjct: 3 IPYLWVDSNEKLREVCEAARQKKVVALDTEFIRIRTFYPQLGLIQLFDGQTVSLIDPKKI 62
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLA 365
+D +L D+ ++KV H D++ Q F M DT FL + A
Sbjct: 63 -QDFSAFCHLLADEQVIKVLHACSEDLEVFQHRFQQLPTPMIDTQIMAGFLGLGASIGFA 121
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ HY +++ DK DW RPL E + YA D YLL +Y M+ + ++N
Sbjct: 122 KLVAHYLEIELDKGASRTDWLARPLSEVQLDYAAADVWYLLPIYQKMQEAM------QEN 175
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
+ K +K V + Y++I ++ L QQ L+ L KWR A+ +D
Sbjct: 176 RWMPAVREECEQLLQKRQKTVNPNKAYLDISQAWQ-LTPQQLAVLQVLAKWRLEEAQKRD 234
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNP 517
+ +V+ L ++A++ P+ + +P
Sbjct: 235 LALNFVVKEQSLFEIAKTQPKHTSELLNFMHP 266
>gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78]
gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78]
Length = 431
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 121/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I +PE + V+ +A+D E + Y L+Q+
Sbjct: 39 EPREGIP------PVIADPESLAAAVAAFASGSGPVAVDAERASGYRYGQRAYLVQLRRA 92
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L L N H A D+ L ++ G+ +FDT A
Sbjct: 93 GAGTALIDPVAC-PDLSGLGAALA--NAEWDLHAATQDLPCL-REIGMVPHSLFDTELAG 148
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 149 RLAGFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 208
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK L F + K + M H + +Q +REL+
Sbjct: 209 ELE--RQGKLEWALEEFDAIASAPPPAPRKDPWRRTSGM-----HRVRRRRQLAVVRELW 261
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
RDRIAR +D S G VLP+ +++ A ++P ++ + A
Sbjct: 262 TLRDRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGA 300
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620
+Q +REL+ RDRIAR +D S G VLP+ +++ A ++P ++ + A
Sbjct: 250 RRRQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGA 300
>gi|416046736|ref|ZP_11575811.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347994465|gb|EGY35743.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 412
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 16 VVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQVALIDPLPI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D N+VK+ H D+ Q+ F M DT FL + A L++
Sbjct: 75 SPFIELLADTNLVKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFLGFAGSTGFATLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y M +Q L +
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYGQM----------QQQLTQT 184
Query: 430 TFTNS-RNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+ ++ N C+ K + Y I + LN + L+ L KWR A +
Sbjct: 185 EWQSAVENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKR 243
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D + +V+ L Q+A+S P+ I +
Sbjct: 244 DLALNFVVRAENLWQVAKSNPKHISTL 270
>gi|430761955|ref|YP_007217812.1| Ribonuclease D [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011579|gb|AGA34331.1| Ribonuclease D [Thioalkalivibrio nitratireducens DSM 14787]
Length = 382
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 121/275 (44%), Gaps = 31/275 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + L+ + + +A+D E+ ++Y CL+Q++T D VD L L +
Sbjct: 6 LITTETGLRALLDAIAGSEWVAMDTEFIREKTYFPKLCLIQLATPDHIACVDPLAL-GGI 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L+++L D ++KVFH A D++ L G +FDT A L Q A L++
Sbjct: 65 GQLDQLLQDSAVLKVFHAASQDLEVLYLVTGKVASPVFDTQVAASLLGHGEQVGYANLVE 124
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ DKT DW RPL ++YAR D +L ++ ++ +L A
Sbjct: 125 AVLHRELDKTQSRTDWARRPLQPAQLEYARDDVRFLTELFVQLQKELDA----------- 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFR-----------SHALLNNQQKYALRELYKWRD 478
+ +L + +P +R H L + LREL WR+
Sbjct: 174 -------LGRLDWLQPEMEALTRPEQYRPDPARAWLRVSGHKRLKPRDLAVLRELAAWRE 226
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
ARD D +V+ + LL +A++ P D+Q + A
Sbjct: 227 TEARDLDRPRRWVISDDALLTIARTRPADLQTLHA 261
>gi|421738653|ref|ZP_16177001.1| ribonuclease D [Streptomyces sp. SM8]
gi|406692927|gb|EKC96600.1| ribonuclease D [Streptomyces sp. SM8]
Length = 418
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 12/242 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L EV+ D + H A
Sbjct: 69 LAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-PDLSGLGEVVEDAEWL--LHAA 125
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L +D G+ +FDT A + R L ++++ +K DW RP
Sbjct: 126 TQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVLGYSLEKGHSAVDWSTRP 184
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L + D ++ +L A GK + F + K +
Sbjct: 185 LPEPWLRYAALDVELLADLRDALEEEL--AGQGKLDWAHQEFDAIASAPPAPPRKDPWRR 242
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL+ RD+IA+ +D S G VLP+ +++ A ++P D+Q
Sbjct: 243 TSGM-----HKVRRRRQLAVVRELWNARDKIAQRRDISPGKVLPDAAIVEAALALPVDVQ 297
Query: 510 GI 511
+
Sbjct: 298 AL 299
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 618
+Q +REL+ RD+IA+ +D S G VLP+ +++ A ++P D+Q +
Sbjct: 251 RRRQLAVVRELWNARDKIAQRRDISPGKVLPDAAIVEAALALPVDVQAL 299
>gi|392420519|ref|YP_006457123.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
gi|390982707|gb|AFM32700.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
Length = 374
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 132/275 (48%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + E +T+L +E +Q +A+D E+ ++ L+Q+ + Y++D L +R D
Sbjct: 8 VLDDEHLTRLCAEWRQLPYVAVDTEFMRVDTFYPIAGLIQVGDGRRAYLIDPLSVR-DWS 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 AFAALLQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL + ++YA D +L +Y+ + LS K+ VL
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSDMQVRYAAEDAQHLAELYEALLPKLS---EDKRAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E +E Y ++ ++ L QQ L+ L WR+R AR +++
Sbjct: 183 D--GAELVANLQRESD--PDEAYRDVKQAWRL-KPQQLAVLKVLAAWRERQARARNQPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
VL L +A++ PRD+ + + P+TV++
Sbjct: 238 RVLREASLWPLARTQPRDLVTLARIEDMHPRTVRQ 272
>gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946]
gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946]
Length = 373
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + ++ +Q +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTNAALCEVCQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLPI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L D+ ++K H D++ Q +FG+ M DT F P A +++
Sbjct: 64 TPFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLSCGFATIVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + DK+ DW RPL E +YA D YLL + + + + AA + +
Sbjct: 124 SFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQ-----MAA 178
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
R +C+ + KP +E Y I + L +Q ALR++ WR +AR+KD +
Sbjct: 179 ALDECRLLCQRRTSVLKP---QEAYREIANAWQ-LRPRQLAALRQMAAWRLEVAREKDMA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ L + A+ +P +
Sbjct: 235 VNFVVREENLWKAARFMPGSL 255
>gi|292488477|ref|YP_003531361.1| ribonuclease D [Erwinia amylovora CFBP1430]
gi|428785421|ref|ZP_19002912.1| ribonuclease D [Erwinia amylovora ACW56400]
gi|291553908|emb|CBA20953.1| Ribonuclease D [Erwinia amylovora CFBP1430]
gi|426276983|gb|EKV54710.1| ribonuclease D [Erwinia amylovora ACW56400]
Length = 369
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + ++ +Q +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNAALCEVCQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLPI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L D+ ++K H D++ Q +FG+ M DT F P A +++
Sbjct: 60 TPFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLSCGFATIVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + DK+ DW RPL E +YA D YLL + + + + AA + +
Sbjct: 120 SFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQ-----MAA 174
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
R +C+ + KP +E Y I + L +Q ALR++ WR +AR+KD +
Sbjct: 175 ALDECRLLCQRRTSVLKP---QEAYREIANAWQ-LRPRQLAALRQMAAWRLEVAREKDMA 230
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ L + A+ +P +
Sbjct: 231 VNFVVREENLWKAARFMPGSL 251
>gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 370
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 15/264 (5%)
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD- 302
+ D + + + +++ L L +Q EIA+D E N ++ CL+Q+ Y++D
Sbjct: 1 MEDDGFIYVDKQDELEDLCDHLAKQAEIALDSEADNLHHFETKLCLLQLRFDGTIYLLDV 60
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
T L DL+ E+L+ +++ HG+D D++ ++ G +FD+ A + L + R
Sbjct: 61 TADL--DLDRFWEILSGLHLI--MHGSDFDLRLFEEFCGFEAKSLFDSMLASQLLGIKRI 116
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
LA LL+ V K Q DW RPL ++YA TD YL + D + + G
Sbjct: 117 GLAALLEENFGVKIPKDSQKSDWSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRG 176
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVF--NEEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
+ + R +++ K F N+E I RS L+ + + A+ EL+ WR +
Sbjct: 177 E-------WLKQRCDNQIRIAKSGFPRNDENSWRIPRSDR-LDERGQAAVYELWHWRQNL 228
Query: 481 ARDKDESTGYVLPNHMLLQMAQSI 504
++ D VL N ++ +A+ +
Sbjct: 229 SKRLDRPPFKVLGNDFIIALAEGV 252
>gi|415765347|ref|ZP_11482696.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416040071|ref|ZP_11574413.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|416069998|ref|ZP_11583480.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|444333728|ref|ZP_21149447.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|347994119|gb|EGY35436.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|347999400|gb|EGY40233.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348653925|gb|EGY69588.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D17P-3]
gi|443551366|gb|ELT59265.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 385
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 16 VVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQVALIDPLPI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D N+VK+ H D+ Q+ F M DT FL + A L++
Sbjct: 75 SPFIELLADTNLVKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFLGFAGSTGFATLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y M +Q L +
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYGQM----------QQQLTQT 184
Query: 430 TFTNS-RNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+ ++ N C+ K + Y I + LN + L+ L KWR A +
Sbjct: 185 EWQSAVENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKR 243
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D + +V+ L Q+A+S P+ I +
Sbjct: 244 DLALNFVVRAENLWQVAKSNPKHISTL 270
>gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp]
gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp]
Length = 377
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 18/259 (6%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+Q+S DK Y++D L + +D L E+L + +VKV H
Sbjct: 27 VALDTEFMRVDTFYPIAGLLQVSGGDKAYLIDPLCI-DDWRPLAELLQAQTVVKVLHSCS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ + G V +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVFLRLTGSLPVPLFDTQVAAGYLNLGF-SMGYSRLVQTLLGIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL I YA D +L+ VY + LSA H VL + + L E V
Sbjct: 145 PLSATQISYAAEDVLHLVEVYQALTQRLSAEKHA---WVLE--DGAELVAALSRE--VDP 197
Query: 449 EEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+E ++R L L+ QQ+ LR L WR+R AR +++ +L H L +A++ P
Sbjct: 198 DE----LWREAKLAWKLSRQQQAVLRALCAWRERQARARNQPRNRILREHSLWPLARTQP 253
Query: 506 RDIQGIFACCNPVPQTVKE 524
++ + + P+TV++
Sbjct: 254 DNLVALARIEDMHPKTVRQ 272
>gi|403512793|ref|YP_006644431.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402802886|gb|AFR10296.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 444
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 19/273 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ LP + ++P + +++ L +A+D E + Y L+Q+
Sbjct: 51 EPREGLP------EVTSDPGTLAGVIAALGAGTGPVAVDAERASGYRYGQRAYLVQLRRE 104
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL ++ + + +V H A D+ L + L +FDT A
Sbjct: 105 GSGSALIDPIAC-PDLSGVDAAIGEAEVV--LHAAHQDLPCL-AEVNLRPGRLFDTELAG 160
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ L R L ++++ D+ K DW RPLPE ++YA D L+ + D ++
Sbjct: 161 RLLGYQRVGLGFMVERLLDIRLAKEHSAVDWSQRPLPEDWLRYAALDVEILIELRDRLEA 220
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L A GK F I ++P + + H + + A+REL+
Sbjct: 221 ELEEA--GKLEWAREEFA---AILAAPPKEP--RTDPWRRTSGIHKVRKQRSLAAVRELW 273
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
RDRIAR++D S G VLP+ +++ A ++PRD
Sbjct: 274 YERDRIARERDTSPGRVLPDAAIVEAATTMPRD 306
Score = 46.6 bits (109), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 576 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 614
A+REL+ RDRIAR++D S G VLP+ +++ A ++PRD
Sbjct: 268 AVRELWYERDRIARERDTSPGRVLPDAAIVEAATTMPRD 306
>gi|290475404|ref|YP_003468292.1| RNase D, processes tRNA [Xenorhabdus bovienii SS-2004]
gi|289174725|emb|CBJ81524.1| RNase D, processes tRNA precursor [Xenorhabdus bovienii SS-2004]
Length = 385
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 130/288 (45%), Gaps = 10/288 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT Q+ + K+ IA+D E+ R+Y L+Q+ ++ ++D L + E
Sbjct: 15 LITSDAQLQSICERAKKHATIALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLDISE-W 73
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ E+LTD++++K H D++ F M DT F+ P A L+
Sbjct: 74 QPFRELLTDRDVLKFIHAGSEDLEVFWNSFQCLPTPMIDTQVLAAFIGHPMSCGFATLVA 133
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V+ DK+ DW RPL E +YA D +YLL + D + A +Q +
Sbjct: 134 QYLHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILM------AATEQAGYMG 187
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + + ++ + E Y +I + L +Q L++L WR AR++D +
Sbjct: 188 AAQDESYLIAQRRKEILMPECAYKDIGNAWQ-LRPKQLACLKKLAGWRLNQARERDLAIN 246
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+V+ L Q+A+ +P + G Q ++ H + A++ ++R
Sbjct: 247 FVIREENLWQVARYMPTSL-GELDALGLSGQEIRCHGRRLLAMVAESR 293
>gi|429734564|ref|ZP_19268573.1| ribonuclease D [Aggregatibacter actinomycetemcomitans Y4]
gi|429151701|gb|EKX94560.1| ribonuclease D [Aggregatibacter actinomycetemcomitans Y4]
Length = 385
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 16 VVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQVALIDPLPI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D N+VK+ H D+ Q+ F M DT FL + A L++
Sbjct: 75 SPFIELLADTNLVKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFLGFAGSTGFATLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y M +Q L +
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYGQM----------QQQLTQT 184
Query: 430 TFTNS-RNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+ ++ N C+ K + Y I + LN + L+ L KWR A +
Sbjct: 185 EWQSAVENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKR 243
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D + +V+ L Q+A+S P+ I +
Sbjct: 244 DLALNFVVRAENLWQVAKSNPKHISTL 270
>gi|70925113|ref|XP_735299.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56508837|emb|CAH86321.1| hypothetical protein PC301947.00.0 [Plasmodium chabaudi chabaudi]
Length = 237
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 281 RSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
SY G+T L+ I T+D DYI+D + ED+ +LNE+ TD I+K+ + +++ I + QKDF
Sbjct: 90 NSYHGFTSLILIGTKDVDYIIDVFNMFEDIYLLNEITTDPKILKITYNSENLILFFQKDF 149
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
+Y + D L + + S+ YL+ +Y +V+ T RPL AIQ +T
Sbjct: 150 SIYFINTIDLLLCANCLNI-KNSIPYLVFNYFNVNIGLTSITSVSLDRPLISEAIQIFKT 208
Query: 401 DTHYLLYVYDCMKLDL 416
+HYL +++D + DL
Sbjct: 209 HSHYLYHLFDYVITDL 224
>gi|347758712|ref|YP_004866274.1| ribonuclease D [Micavibrio aeruginosavorus ARL-13]
gi|347591230|gb|AEP10272.1| ribonuclease D [Micavibrio aeruginosavorus ARL-13]
Length = 385
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 126/275 (45%), Gaps = 40/275 (14%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLR 307
+ +I+ +++ L +L Q I +D E+ ++Y CL+Q+++ D + Y VD L
Sbjct: 1 MTIISATDELKTLCHDLAQHPFITVDTEFLRDKTYFPVLCLIQVASPDGQPYAVDPLAEG 60
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSL 364
DL L E++ ++ ++KVFH A D++ G +FDT A C F +
Sbjct: 61 IDLTPLYELMMNRAVLKVFHAARQDLEIFFNMMGSIPTPVFDTQVAAMVCGF----GDQI 116
Query: 365 AYL--LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY-----DCMKLDLS 417
YL ++ C DK Q DW RPL + ++YA D +L VY D K D +
Sbjct: 117 GYLNLVQEICHQKLDKGAQFTDWSRRPLSDKQVKYALDDVTWLRDVYRKLDHDLKKRDRT 176
Query: 418 AAAHGKQNLVL--STFTNSRNIC----KLKYEKPVFNEEGYMNIFRSHALLNNQQKYALR 471
+ + + N++ +T+TN + KL+ EKP + L+
Sbjct: 177 SWVNEEMNILTDPATYTNPPDTAWKRIKLRTEKP-------------------KALAVLK 217
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
E+ WR+R A+ ++ G +L + L +A PR
Sbjct: 218 EVAAWREREAQRRNVPRGRILRDETLADLAVHGPR 252
>gi|335035213|ref|ZP_08528556.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
gi|333793644|gb|EGL64998.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
Length = 388
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ + N+VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPMFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T NI + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMNILESRDTYDMHPDDAWLRL--KSRLRKPTELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDGIFEIAQQQPKDAEAL 254
>gi|312172621|emb|CBX80877.1| Ribonuclease D [Erwinia amylovora ATCC BAA-2158]
Length = 369
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + ++ +Q +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNAALCEVCQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLPI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L D+ ++K H D++ Q +FG+ M DT F P A +++
Sbjct: 60 TPFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLSCGFATIVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + DK+ DW RPL E +YA D YLL + + + + AA + +
Sbjct: 120 SFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQ-----MAA 174
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
R +C+ + KP +E Y I + L +Q ALR++ WR +AR+KD +
Sbjct: 175 ALDECRLLCQRRTSVLKP---QEAYREIANAWQ-LRPRQLAALRQMAAWRLEVAREKDMA 230
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ L + A+ +P +
Sbjct: 231 VNFVVREENLWKAARFMPGSL 251
>gi|421504183|ref|ZP_15951127.1| ribonuclease D [Pseudomonas mendocina DLHK]
gi|400345284|gb|EJO93650.1| ribonuclease D [Pseudomonas mendocina DLHK]
Length = 377
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 18/259 (6%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+Q+S DK Y++D L + +D L E+L + +VKV H
Sbjct: 27 VALDTEFMRVDTFYPIAGLLQVSGGDKAYLIDPLCI-DDWRPLAELLQAQTVVKVLHSCS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ + G V +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVFLRLTGSLPVPLFDTQVAAGYLNLGF-SMGYSRLVQTLLGIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL I YA D +L+ VY + LSA H VL + + L E V
Sbjct: 145 PLSATQISYAAEDVLHLVEVYQVLTQRLSAEKHA---WVLE--DGAELVAALSRE--VDP 197
Query: 449 EEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+E ++R L L+ QQ+ LR L WR+R AR +++ +L H L +A++ P
Sbjct: 198 DE----LWREAKLAWKLSRQQQAVLRALCAWRERQARARNQPRNRILREHSLWPLARTQP 253
Query: 506 RDIQGIFACCNPVPQTVKE 524
++ + + P+TV++
Sbjct: 254 DNLVALARIEDMHPKTVRQ 272
>gi|387122057|ref|YP_006287940.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
gi|385876549|gb|AFI88108.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 385
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 16 VVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQVALIDPLPI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D N+VK+ H D+ Q+ F M DT FL + A L++
Sbjct: 75 SPFIELLADTNLVKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFLGFAGSTGFATLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y M +Q L +
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYGQM----------QQQLTQT 184
Query: 430 TFTNS-RNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+ ++ N C+ K + Y I + LN + L+ L KWR A +
Sbjct: 185 EWQSAVENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKR 243
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D + +V+ L Q+A+S P+ I +
Sbjct: 244 DLALNFVVRAENLWQVAKSNPKHISTL 270
>gi|452963539|gb|EME68605.1| ribonuclease D [Magnetospirillum sp. SO-1]
Length = 396
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 113/269 (42%), Gaps = 31/269 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI++ E + LK + +D E+ ++Y CL+Q++ D+ +D L DL
Sbjct: 1 MISDTESLAAFCRRLKSAPFVTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPGMDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ D N++KVFH A D++ +FDT A C F ++ Y
Sbjct: 61 APLFELMADTNVLKVFHAARQDVEIFLHLADAIPTPIFDTQIAAMVCGF----GDAVGYE 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L DK+ + DW RPL E +QYA D +L Y +
Sbjct: 117 TLASQLAKARIDKSMRFTDWAMRPLSEKQVQYALADVTHLRVAY--------------EK 162
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYM-----NIFRSHALLNNQQKY--ALRELYKWRD 478
LV N R I L E + E G N +R + ++ L+EL WR+
Sbjct: 163 LVRKVEKNGR-IEWLAEEMALLTEPGTYRVDPENAWRRLKPRSTSPRFLGVLKELAAWRE 221
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRD 507
R A+D+D +L + L ++A P D
Sbjct: 222 REAQDRDLPRQRILRDETLTEIAAHHPVD 250
>gi|387769548|ref|ZP_10125811.1| ribonuclease D [Pasteurella bettyae CCUG 2042]
gi|386906857|gb|EIJ71582.1| ribonuclease D [Pasteurella bettyae CCUG 2042]
Length = 380
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 19/262 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T + + ++ + + IA+D E+ RSY L+Q+ ++ ++D + +D
Sbjct: 16 LVTTDDALAEVCMKAASRSVIALDTEFVRVRSYYPKLGLIQLYDGEQVSLIDPTNI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR-QSLAYLLK 369
+L ++N++KV H D++ Q + + M DT FL LA L+K
Sbjct: 75 TAFQSLLANQNVLKVLHACYEDLEVFQHYYQQLPMPMMDTQIMANFLGFQNSMGLAALIK 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-----AAAHGKQ 424
HY D++ DK DW RPL + + YA D YLL +Y+ M L+ +A H
Sbjct: 135 HYFDLEIDKGASRTDWLARPLTDKQLAYAAADVWYLLPLYEKMLSVLASTEWQSAVHFDC 194
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
NL++ T S KP +E+ Y+NI S LN + L+ L KWR A +
Sbjct: 195 NLLIEKHTQS---------KP--SEKAYLNI-PSAWKLNPPELMRLKLLAKWRQEEAIKR 242
Query: 485 DESTGYVLPNHMLLQMAQSIPR 506
D + +V+ +A+ P+
Sbjct: 243 DLALNFVVKGEHFWLVAKYNPK 264
>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
Length = 383
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 17/262 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + + + +Q+ +A+D E+ RSY L+Q+ ++ ++D + D
Sbjct: 13 LITTNSGLKTVCEQAQQKSAVALDTEFIRIRSYYPKLGLIQLYDGERVSLIDPTTI-TDF 71
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+L D N++KV H D++ F + DT FL P + LA L++
Sbjct: 72 SPFTALLADINVIKVLHACYEDLEVFSHYFQQLPEPIMDTQVMAGFLAFPHSTGLASLIR 131
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL E +QYA D YLL +Y+ M ++L+ +
Sbjct: 132 HYLALEIDKGASRTDWLARPLSEKQLQYAAADVWYLLPLYEKMAVELAK----------T 181
Query: 430 TFTNSRNI-CKLKYEKPVF---NEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
+ ++ C L EK E Y+N+ + L+ + L+ L KWR A +D
Sbjct: 182 RWQSAVEFDCGLLLEKQRCVKEAESAYLNVPNAWR-LSPVELMRLKLLAKWRQEEAVKRD 240
Query: 486 ESTGYVLPNHMLLQMAQSIPRD 507
+ +V+ N L +A+ P++
Sbjct: 241 LALNFVVHNESLWTVAKHAPKN 262
>gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
Length = 437
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 14/243 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYI-VDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y T L+Q+ + +D + L DL +++ L + V H A
Sbjct: 63 VAVDAERASGYRYGQSTYLVQLRREGAGTVLIDPVAL-PDLSAMSDAL--DGVEWVLHAA 119
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + L +FDT A + L M R LA ++ + K DW RP
Sbjct: 120 SQDLPGLAEQH-LVPSAVFDTELAARILGMERVGLAAVVAEVLGLGLAKEHSAVDWSTRP 178
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+ + YA D L+ + D M L AA GK F ++ P
Sbjct: 179 LPDAWLLYAALDVEVLVELRDRMAERLEAA--GKTEWARQEFE------AVRLTGPAAPR 230
Query: 450 -EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E + + SH L +Q +REL+ RD AR +D + G VLP+ ++ AQ++PR +
Sbjct: 231 VEPWRRVSGSHTLRQARQLAVVRELWLTRDENARKRDIAPGRVLPDRAIVAAAQAMPRTV 290
Query: 509 QGI 511
+
Sbjct: 291 PAL 293
>gi|242079315|ref|XP_002444426.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
gi|241940776|gb|EES13921.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
Length = 112
Score = 89.0 bits (219), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 395 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN 454
+ YAR DTHYLLY+YD M+ L + + NL+L S IC YEK + + Y++
Sbjct: 4 VLYAREDTHYLLYIYDLMRQRLQRESTFENNLLLEVHKRSNEICLQFYEKELLTDTSYLH 63
Query: 455 IF--RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 501
I+ R H L+ +Q + L++WRD IAR +DESTGY+LPN L+++
Sbjct: 64 IYGLREHE-LDAKQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIG 111
Score = 46.6 bits (109), Expect = 0.077, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMA 608
H+ + +Q + L++WRD IAR +DESTGY+LPN L+++
Sbjct: 70 HELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIG 111
>gi|108760811|ref|YP_634116.1| ribonuclease D [Myxococcus xanthus DK 1622]
gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
Length = 389
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L+ +EIA+DLE + +++ C +Q++T D+ +++DTL+ +L ++ D K
Sbjct: 24 LEAAREIAVDLEADSMHAFRARLCFLQLATDDQVFLLDTLQPGVVPGMLAPLMADPARTK 83
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
FH A D+++L + G+ V G+FDTH+A L P+ LA L + V+ K Q D
Sbjct: 84 FFHAAQGDLQFL-AEVGVRVQGLFDTHRAATLLGWPKVGLADLARERLGVELPKEHQQSD 142
Query: 385 WRHRPLPEPAIQYARTDTHYL 405
+ RPLP +Y D YL
Sbjct: 143 FSIRPLPPGMREYIANDVRYL 163
>gi|417860412|ref|ZP_12505468.1| ribonuclease D [Agrobacterium tumefaciens F2]
gi|338823476|gb|EGP57444.1| ribonuclease D [Agrobacterium tumefaciens F2]
Length = 386
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ + N+VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPLFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T +I + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMDILESRDTYDMHPDDAWLRL--KSRLRKPTELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIFEIAQQQPKDAEAL 254
>gi|387126864|ref|YP_006295469.1| ribonuclease D [Methylophaga sp. JAM1]
gi|386273926|gb|AFI83824.1| Ribonuclease D [Methylophaga sp. JAM1]
Length = 382
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 115/261 (44%), Gaps = 15/261 (5%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
++ I +TQ SE++ + +AID E+ ++Y CL+QI+ D VD + ++
Sbjct: 3 VLYIDSDTALTQFCSEIQHSKWLAIDTEFLREKTYYPQLCLIQIANDDIIACVDPIAIK- 61
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYL 367
DL L +L +I VFH A D++ L +FDT A L Q L
Sbjct: 62 DLTPLLNLLYQPDITLVFHAARQDLELLYLLKNSLPPNLFDTQLAATILGDGDQIGYGNL 121
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---KQ 424
+K DV DK DW RPL ++YA D YL +Y M DL K+
Sbjct: 122 VKQRLDVSLDKAHSRADWTQRPLSPEQLEYAADDVRYLCELYHQMSADLEKQQRTEWLKE 181
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+ + +N+ N V + E R L Q L++L WR++ A D+
Sbjct: 182 D--FAALSNADNY--------VADPETIWRKIRGAGKLKGVQLAVLQQLAAWREQRAMDR 231
Query: 485 DESTGYVLPNHMLLQMAQSIP 505
D ++L + ++L +A+ P
Sbjct: 232 DRPRRWILKDEVMLDLARFAP 252
>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium fabrum str. C58]
gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium fabrum str. C58]
Length = 388
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ + N+VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPMFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T NI + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMNILESRDTYDMHPDDAWLRL--KSRLRKPTELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDGIFEIAQQQPKDAEAL 254
>gi|381162216|ref|ZP_09871446.1| ribonuclease D [Saccharomonospora azurea NA-128]
gi|379254121|gb|EHY88047.1| ribonuclease D [Saccharomonospora azurea NA-128]
Length = 413
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 116/268 (43%), Gaps = 13/268 (4%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YI 300
P TP +I +P + + L + +A+D E + Y L+QI ++
Sbjct: 22 PADGTP-DVIADPATLRAACARLAEGSGALAVDTERASGYRYWPRAYLVQIRREGAGTFL 80
Query: 301 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
+D + LR+ L L EV+ D + V H A D+ L + GL +FDT A +
Sbjct: 81 IDPIPLRDHLAPLAEVMND--VEWVLHAASQDLPCL-AELGLRPPSLFDTELAGRLAGHQ 137
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
R +L L++ +K DW RPLP + YA D L+ + + KL+ AA
Sbjct: 138 RVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLRE--KLEAELAA 195
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
GK + F R E P E + H + + A+R L++ RD +
Sbjct: 196 SGKLDWARQEFEAVRTA-----EPPRPRSEPWRRTSGIHKIRTARGLAAVRALWEARDEL 250
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDI 508
AR +D + G +LP+ ++ + PR +
Sbjct: 251 ARKRDRAPGRILPDSAIINAVLAAPRTV 278
>gi|381165928|ref|ZP_09875147.1| Ribonuclease D (RNase D) [Phaeospirillum molischianum DSM 120]
gi|380684912|emb|CCG39959.1| Ribonuclease D (RNase D) [Phaeospirillum molischianum DSM 120]
Length = 399
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 31/269 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI++ E + LK + +D E+ ++Y CL+Q+ D+ +++D L DL
Sbjct: 3 MISDTESLAAFCQRLKTASFVTVDTEFMREKTYWPILCLVQVGGPDEAHVIDPLAPGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ D +++KVFH A D++ G +FDT A C F +++Y
Sbjct: 63 APLFELMADTSVLKVFHAARQDVEIFLHIAGALPNPLFDTQVAAMVCGF----GDAVSYE 118
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L DK+ + DW RPL + IQYA D +L Y +
Sbjct: 119 TLASQLAKARIDKSLRFTDWSIRPLSDKQIQYALADVTHLRVAY--------------EK 164
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNI-----FRSHALLNNQQKY--ALRELYKWRD 478
LV N R + L E + + + +R +N ++ L+EL WR+
Sbjct: 165 LVRKLERNGR-LEWLAEEMAILADPATYRVDPAQAWRRLKPRSNSPRFLSVLKELAAWRE 223
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRD 507
A+D+D VL + L ++A PRD
Sbjct: 224 HEAQDRDLPRQRVLRDETLTEIAAHHPRD 252
>gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus]
Length = 430
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 12/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L E L+ + V H A
Sbjct: 66 VAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-PDLSALGEALS--GVEWVLHAA 122
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L ++ G+ +FDT A + PR L ++++ +K DW RP
Sbjct: 123 TQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRP 181
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L GK + F + + K +
Sbjct: 182 LPEPWLRYAALDVELLVDLRDALEKELD--RQGKLDWARQEFDAIASAPPPEPRKDPWRR 239
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL++ RDRIAR +D S G VL + +++ A ++P ++
Sbjct: 240 TSGM-----HKVRRRRQMAVVRELWETRDRIARRRDVSPGKVLSDAAIVEAALALPANLH 294
Query: 510 GIFA 513
+ A
Sbjct: 295 AMAA 298
>gi|357404370|ref|YP_004916294.1| ribonuclease D [Methylomicrobium alcaliphilum 20Z]
gi|351717035|emb|CCE22700.1| Ribonuclease D [Methylomicrobium alcaliphilum 20Z]
Length = 386
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 133/280 (47%), Gaps = 9/280 (3%)
Query: 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
T + I P+++ +L ++ ++ +A+D E+ ++Y CL+QI+T + VD + L
Sbjct: 2 TAIQYIDTPQKLDELCRQIAKESWLALDTEFLREKTYYPKFCLLQIATPEWVACVDPIAL 61
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLA 365
+DL L EV+ + I+KVFH D++ + G +FDT A L A
Sbjct: 62 -DDLGALFEVIYNPKIIKVFHSCRQDLEIFYQLTGKIPQPIFDTQIAAPLLGYQENPGYA 120
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ + +++ K DW RPL + +QYA D YL +Y M L A + +
Sbjct: 121 MLVSSFLNINLSKAHTRTDWTVRPLSQAQLQYAADDVIYLCQIYQTMLKKL--AELNRLD 178
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
+ S F N +L P + ++ I R L +Q ++ L +WR++ A+ +D
Sbjct: 179 WLESDFA-MLNDPELYEISP---KNAWLKI-RGKNKLTGKQLSIVQTLAEWREQTAQKED 233
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
++L + M+ ++A+ P ++ + N + V +H
Sbjct: 234 RPRNWLLRDDMMFELAKQQPGTVEEMLKVHNINERMVSKH 273
>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
Length = 380
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 136/301 (45%), Gaps = 17/301 (5%)
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
DT + + + ++V+ + Q+ +A+D E+ ++ L+Q++ + +++D L
Sbjct: 6 DTSCRWVRDTTALNEMVALISQEAFVAVDTEFRRRDTFYPEVALIQLAAAGQCWLLDPLT 65
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
L +D + L ++ +++K+ H A D++ ++ G+ M DT +A L + L+
Sbjct: 66 L-DDTQPLQKLFRQTDLIKILHSASEDLEVFERWLGVLPRPMIDTQKAAAMLGLGF-GLS 123
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L+ +D K DW RPL + YA D +L + L+ A A G
Sbjct: 124 YRDLVHDLLSIDVAKDETQSDWLVRPLTDAQCHYAMQDVTFLAQCWPI--LEARAEASGY 181
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
+ +L + V G + F+S LN+QQ L +L WR+ ARD
Sbjct: 182 LSWILE-----------ESAAMVTGGRGPLAKFKSAWKLNSQQLAVLLDLIDWRESKARD 230
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
++ ++L + ++L +A+ IP + + A + V+ + +I A + L+
Sbjct: 231 RNRPRNWILHDKVILDLAKRIPTSMPQLAAADSMPAGVVRREGKQLMTLIESASERGLSD 290
Query: 544 P 544
P
Sbjct: 291 P 291
>gi|407700585|ref|YP_006825372.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
gi|407249732|gb|AFT78917.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
Length = 385
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 142/300 (47%), Gaps = 10/300 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT EQ+ ++ + ++Q+ +A+D E+ ++ + L+Q+ + ++D L + +++
Sbjct: 5 LITTSEQLEKVCTAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI-DNM 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM-PRQSLAYLLK 369
+ +++ + +VKV H DI+ F +FDT A L M P A L++
Sbjct: 64 QPFIDLMENTEVVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMGPSLGYAKLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
CD+ DK DW RPL E + YA D YLL Y + + A GK + +
Sbjct: 124 LLCDISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEA--GKVHWIYQ 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + K + + P + Y++I +++ LN++Q L+ L WR AR KD +
Sbjct: 182 EI--ALLVDKKRAQMP--EDFAYLSI-KNNWRLNSEQLTVLQALAAWRLNTARKKDLALN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ 549
+V L + AQ + G+ Q+V+ + I +I +AR + P EKL+
Sbjct: 237 FVFKEGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEARAKYAQTP-EKLR 295
>gi|406597337|ref|YP_006748467.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407684351|ref|YP_006799525.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407688279|ref|YP_006803452.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|406374658|gb|AFS37913.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407245962|gb|AFT75148.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407291659|gb|AFT95971.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 385
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 142/300 (47%), Gaps = 10/300 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT EQ+ ++ + ++Q+ +A+D E+ ++ + L+Q+ + ++D L + +++
Sbjct: 5 LITTSEQLEKVCTAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI-DNM 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM-PRQSLAYLLK 369
+ +++ + +VKV H DI+ F +FDT A L M P A L++
Sbjct: 64 QPFIDLMENTEVVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMGPSLGYAKLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
CD+ DK DW RPL E + YA D YLL Y + + A GK + +
Sbjct: 124 LLCDISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEA--GKVHWIYQ 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + K + + P + Y++I +++ LN++Q L+ L WR AR KD +
Sbjct: 182 EI--ALLVDKKRAQMP--EDFAYLSI-KNNWRLNSEQLTVLQALAAWRLNTARKKDLALN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ 549
+V L + AQ + G+ Q+V+ + I +I +AR + P EKL+
Sbjct: 237 FVFKEGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEARAKYAQTP-EKLR 295
>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
Length = 429
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ E + L + L+++ + ID E+ R+Y C++Q+ D ++DTL DL
Sbjct: 48 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDL 107
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ E+L D ++KVFH DI+ FG MFDT A Q + Y L+
Sbjct: 108 APVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQ-VGYDTLV 166
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS----AAAHGKQ 424
DK + DW RPL + I YA D +L VY+ ++ L A ++
Sbjct: 167 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWVSEE 226
Query: 425 NLVLSTFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
VL+ R +E +P N Y+ + R+ A RE+ R I R
Sbjct: 227 MAVLNDPATYRTDPVTMWERLRPRTNNRRYLGLLRAIC--------AWREVEAQRLNIPR 278
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++ + LL++A + P D + +
Sbjct: 279 QR------LIKDESLLEIAATSPADAESL 301
>gi|354597650|ref|ZP_09015667.1| ribonuclease D [Brenneria sp. EniD312]
gi|353675585|gb|EHD21618.1| ribonuclease D [Brenneria sp. EniD312]
Length = 373
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 9/259 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ ++ +Q ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITTDAGLEQVCTQARQYTQVALDTEFVRTRTYYPQLGLIQLYDGERLALIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L+D+ +VK H D++ FGL DT FL P A L+
Sbjct: 64 APFQQLLSDEQVVKFLHAGSEDLEVFLNAFGLSPTPFIDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y DV DK+ DW RPL E YA D YLL + +KL AA G L
Sbjct: 124 EYMDVALDKSESRTDWLARPLSEKQCDYAAADVFYLLPM--AIKLVQETAAAGWTAAALD 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
R +C+ K E + E Y I + L + L+ L WR R AR++D +
Sbjct: 182 ---ECRQLCQRKREI-LAPELAYREIGNAWQ-LRGRNLACLQLLAAWRLRKARERDSAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDI 508
+V+ L Q+A+ +P +
Sbjct: 237 FVVREENLCQVARFLPASL 255
>gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
Length = 383
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 9/265 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + + + +Q+ +A+D E+ R+ L+Q+ ++ ++D L + +D
Sbjct: 16 LITTDQALADVCVFAQQKSVVALDTEFVRIRTLYPQLGLIQLYDGERVSLIDPLSI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+L ++N++KV H D++ Q + M DT FL P + LA L++
Sbjct: 75 SPFIALLANQNVLKVLHACSEDLEVFQHYYQQMPTPMIDTQIMASFLSFPNSTGLATLIQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + + YA D YLL +Y M+ DL +Q S
Sbjct: 135 HYFQLEIDKGASRTDWLARPLSDKQLVYAAADVWYLLPLYQRMQQDL------QQTPWQS 188
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N + K E+ E Y+NI + LN Q+ L+ L KWR A +D +
Sbjct: 189 AVENDCEMLLAKREQGKDPEFAYLNIPNAWR-LNQQELMRLKVLAKWRLEDAMKRDLALN 247
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFAC 514
+V+ L +A++ P+ + A
Sbjct: 248 FVVRGEHLWAVAKNNPKHTSELLAL 272
>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
Length = 389
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 30/273 (10%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRED 309
+IT + + ++ Q + +D E+ +Y CL+QI+ D +VD L D
Sbjct: 3 LITSTDGLAATCAQFATQPFVTVDTEFMRETTYYPKLCLIQIAAPDGSTALVDPLAPAID 62
Query: 310 LEVLNEVLTDKNIVKVFHGA--DSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSL 364
L ++ D+ ++KVFH A D +I WLQ GL FDT A C + S+
Sbjct: 63 LTPFFALMGDERVLKVFHSARQDLEIIWLQG--GLLPQPFFDTQVAAMVCGY----GDSV 116
Query: 365 AY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
+Y L+ DK+ + DW RPL E + YA +D +L+ VY+ + L A G
Sbjct: 117 SYEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLSYALSDVTHLIKVYEALARQLLATDRG 176
Query: 423 ----KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRD 478
++ VL++ R + + G M R A+L E+ WR+
Sbjct: 177 AWLDEEMAVLTSPETYRADPDQAWRRLA----GRMRKAREIAILM--------EVAAWRE 224
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
R A+ ++ G +L + +L +A + PR ++ +
Sbjct: 225 REAQSRNVPRGRILKDEAVLDVATAAPRSVEAL 257
>gi|444349101|ref|ZP_21156621.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|443545434|gb|ELT55238.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
Length = 370
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 16/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
M+T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 1 MVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDRVALIDPLPI-QDF 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
++L D N+VK+ H D+ Q F M DT FL + A L++
Sbjct: 60 SPFIKLLADTNLVKILHACSEDLDVFQHYFQQLPRPMCDTQVMAHFLGFAGSTGFATLVQ 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y+ M+ L+ Q++V
Sbjct: 120 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYEQMQQQLTQTEW--QSVV-- 175
Query: 430 TFTNSRNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
N C+ K + Y I + LN + L+ L KWR A +D
Sbjct: 176 -----ENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKRD 229
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ +V+ L Q+A+S P+ I +
Sbjct: 230 LALNFVVRAENLWQVAKSNPKHISTL 255
>gi|83311936|ref|YP_422200.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
gi|82946777|dbj|BAE51641.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
Length = 397
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 113/269 (42%), Gaps = 31/269 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI++ E + LK + +D E+ ++Y CL+Q++ D+ +D L DL
Sbjct: 3 MISDTESLAAFCRRLKSAPFVTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPDMDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ D N++KVFH A D++ +FDT A C F S+ Y
Sbjct: 63 APLFELMADTNVLKVFHAARQDVEIFLHLADAIPTPIFDTQIAAMVCGF----GDSVGYE 118
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L DK+ + DW RPL E IQYA D +L Y +
Sbjct: 119 TLASQLAKARIDKSMRFTDWSIRPLSEKQIQYALADVTHLRVAY--------------EK 164
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYM-----NIFRSHALLNNQQKY--ALRELYKWRD 478
LV N R I L E + E G N +R + ++ L+EL WR+
Sbjct: 165 LVRKVEKNGR-IEWLSEEMALLTEPGTYRVDPENAWRRLKPRSTSGRFLAVLKELAAWRE 223
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRD 507
R A+++D +L + L ++A P D
Sbjct: 224 REAQERDLPRQRILRDETLTEIAAHHPTD 252
>gi|374291597|ref|YP_005038632.1| Ribonuclease D [Azospirillum lipoferum 4B]
gi|357423536|emb|CBS86395.1| Ribonuclease D [Azospirillum lipoferum 4B]
Length = 396
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 27/270 (10%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT + + L + I +D E+ ++Y CL+Q+ D +D L
Sbjct: 1 MTLITTTDALQAFCQSLAGAEYITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGI 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL L +++D +++KVFH A D++ G +FDT A C F +S+
Sbjct: 61 DLAPLFALMSDPSVLKVFHAARQDVEIFWHLSGQIPHPLFDTQVAAMVCGF----GESVG 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L+ DK+ + DW HRPL E + YA +D +L Y+ +K L A G+
Sbjct: 117 YETLVTKLAGARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRL--ARSGR 174
Query: 424 QNLV---LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA--LRELYKWRD 478
+ + ++ T+ Y+ V E YM + + N+ ++ L+EL WR+
Sbjct: 175 SHWLEEEMAILTDPAT-----YQ--VDPESSYMRL----KVRTNKPRFMAILKELAAWRE 223
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
R A+ +D+ VL + LL++A P +
Sbjct: 224 REAQRRDQPRSRVLRDEALLEIAAHAPTTV 253
>gi|342179228|sp|Q0BVP4.2|RND_GRABC RecName: Full=Ribonuclease D; Short=RNase D
Length = 395
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ E + L + L+++ + ID E+ R+Y C++Q+ D ++DTL DL
Sbjct: 14 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDL 73
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ E+L D ++KVFH DI+ FG MFDT A Q + Y L+
Sbjct: 74 APVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQ-VGYDTLV 132
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS----AAAHGKQ 424
DK + DW RPL + I YA D +L VY+ ++ L A ++
Sbjct: 133 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWVSEE 192
Query: 425 NLVLSTFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
VL+ R +E +P N Y+ + R+ A RE+ R I R
Sbjct: 193 MAVLNDPATYRTDPVTMWERLRPRTNNRRYLGLLRAIC--------AWREVEAQRLNIPR 244
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++ + LL++A + P D + +
Sbjct: 245 QR------LIKDESLLEIAATSPADAESL 267
>gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48]
gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48]
Length = 382
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 24/264 (9%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT +T +++ I +D E+ +Y CL+Q ++ + I+D L DL+
Sbjct: 4 ITTTAALTDFCAKIASAPFITVDTEFMRETTYWPKLCLIQAASEEHAGIIDPLSPDLDLK 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
++LTD I+KVFH D++ + + G +FDT A Q +AY L++
Sbjct: 64 PFLDLLTDPAILKVFHACRQDVE-IFNNLGAMPAPVFDTQVAAMAAGFGDQ-VAYDSLVR 121
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA------AAHGK 423
VD DK + DW RPL E +QYA D +L +Y + L A A
Sbjct: 122 QVIKVDIDKGSRFTDWSRRPLSEQQLQYALGDVTHLARLYPKLVEKLKAQNRYEWVAAEM 181
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
+L N+ + +P YM +F +E+ WR+R+A++
Sbjct: 182 ADLTDPKLYNTSPDDAWRRLRPRKPSLKYMAVF--------------KEVAAWRERVAQE 227
Query: 484 KDESTGYVLPNHMLLQMAQSIPRD 507
+D+ G +L + + ++A +P D
Sbjct: 228 RDQPRGRILKDEGVDEIATQLPTD 251
>gi|378754805|gb|EHY64834.1| hypothetical protein NERG_02237 [Nematocida sp. 1 ERTm2]
Length = 471
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/423 (24%), Positives = 183/423 (43%), Gaps = 64/423 (15%)
Query: 103 DKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFML 162
+++LE I+ + + S+LP Q I+ +S +K F+L
Sbjct: 63 EEILEDIHKKCVSTETAEEESILPEQTTILIQSQSKKR-------------------FVL 103
Query: 163 NKGAVEIERPQLQFKVKVDN----SYEQLF--EPKLKEKPNALKPLAILLEKYDAIESFC 216
+K I RPQ+ FK + D S F + K E +A + A E
Sbjct: 104 SKN---IPRPQINFKSRKDTYAMKSEGFCFSKQAKSAESTSAARDSAQQREG-----GLP 155
Query: 217 HPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLV-SELKQQQEIAIDL 275
E E+ V K+ + + A + TP++ + E+ ++ S + Q++ I +D+
Sbjct: 156 DAKEMEVQSDVLKQAYNALKNVDSAADI--TPIIYYIKTEEECEMANSHIMQEKIIGVDI 213
Query: 276 EYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 335
+ H +RSY G+TC +Q++T + YI D ++LR ++L ++ +IVKVF+ A I W
Sbjct: 214 KTHKFRSYSGFTCYIQVATLESVYIFDMIELRNHSKLLT-FWSEPSIVKVFYKASEKIAW 272
Query: 336 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 395
L+KD VV D + P ++L + + K QL DWR++P+ +
Sbjct: 273 LRKDLQYTVVSYIDLLSLHGYPEEPIRNLGRAVFYSTGRQVRKKLQLMDWRYKPVSDEMY 332
Query: 396 QYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKY-----EKPVFNEE 450
YLL L+AA ++S T + KY ++P+ EE
Sbjct: 333 TDLTEQVGYLL---------LAAAG------MISRCTEKEFVSGYKYGVEAVQEPLTPEE 377
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + +L ++ RD IA+ +DES +++ + L++ + P +
Sbjct: 378 FLLA-------KGIEPTESLVKIVMLRDFIAKQEDESPQFLMTDRQLVRFIKEQPSSPEQ 430
Query: 511 IFA 513
IF+
Sbjct: 431 IFS 433
>gi|110633474|ref|YP_673682.1| ribonuclease D [Chelativorans sp. BNC1]
gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
Length = 392
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 46/316 (14%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I ++ V+ L+ + +D E+ ++ CL+Q++ +VD L DL
Sbjct: 3 LIKSRSELENAVAALENSDFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLADGMDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
++ ++ +VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 63 APFFRLMGNEQVVKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVCGF----GDSISYD 118
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ DKT + DWRHRPL E ++YA D +L+ VY + +L G++
Sbjct: 119 QLVLRITGEHIDKTSRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQRG--GREG 176
Query: 426 LV---LSTFT----------NSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE 472
+ + T ++ K++ KPV + L+
Sbjct: 177 WLKEEMDVLTARETYDPHPDDAWKRLKMRARKPV-------------------ELAILQR 217
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAI 532
+ WR+R AR+++ G ++ + L ++AQ PRDI + + VP+ + A
Sbjct: 218 IAAWREREARERNVPRGRIMKDDALYEVAQQQPRDIAAL-SRLRAVPRGWERS--GSAAA 274
Query: 533 ILKARLQSLTKPVEKL 548
+LKA +L P E L
Sbjct: 275 LLKAVNDALALPKEAL 290
>gi|300717019|ref|YP_003741822.1| ribonuclease D [Erwinia billingiae Eb661]
gi|299062855|emb|CAX59975.1| Ribonuclease D [Erwinia billingiae Eb661]
Length = 373
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT E + +L +Q +A+D E+ R+Y L+Q+ + ++D L + E
Sbjct: 5 MITTNEALAELCLTARQFPALALDTEFVRTRTYYPGLGLIQMYDGENIALIDPLPITE-W 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L D+ ++K H D++ ++ + V M DT F P A +++
Sbjct: 64 APFRDLLLDEKVIKFLHAGSEDLEVFLHEYDVLPVPMIDTQILAAFTGRPLSCGFATIVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + DK+ DW RPL E QYA D YLL + KL A G+ N L
Sbjct: 124 SFTGIALDKSESRTDWLARPLTEKQCQYAAADVFYLLPI--AHKLLAEAEESGRINAAL- 180
Query: 430 TFTNSRNICKL---KYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
N C L + + V +E Y +I + L +Q ALR + WR +AR+KD
Sbjct: 181 ------NECSLLCQRRQMVVAPQEAYRDITNAWQ-LRPRQLAALRLMAAWRLELAREKDM 233
Query: 487 STGYVLPNHMLLQMAQSIP 505
+ +V+ L ++A+ +P
Sbjct: 234 AVNFVVREENLWKVARYMP 252
>gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
Length = 383
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 39/270 (14%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I E +T+ L + + +D E+ ++ CL+Q+++ D + +VD L L+
Sbjct: 4 IKTTEALTRACEALSRSPYVTVDTEFIRETTFWPELCLIQMASDDTEVLVDPLAKGLSLD 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY-- 366
++ D+++VKVFH A D++ + K + +FDT A C F +S+AY
Sbjct: 64 PFFALMADESVVKVFHAARQDLEIVYKLGAVIPKPLFDTQIAAMVCGF----GESIAYDQ 119
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA-HGKQN 425
L+ D DK+ + DWRHRPL + + YA D +L VY +K L + H +
Sbjct: 120 LVARLTDGRIDKSSRFTDWRHRPLSDKQLTYALADVTHLRDVYKALKAQLEETSRHSWLD 179
Query: 426 LVLSTFTNSRNI----------CKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYK 475
++ + + K++ +KP+ + L+E+
Sbjct: 180 EEMAILADPQTYDLHPDDAWRRMKMRVKKPI-------------------ELQILKEVAA 220
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
WR+R AR D G +L + + ++AQ P
Sbjct: 221 WREREARSNDRPRGRILKDDAIYEIAQQKP 250
>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
Length = 382
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 122/279 (43%), Gaps = 29/279 (10%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT + + Q S++ IA+D E+ +Y CL+Q +T + I+D DL
Sbjct: 4 ITTNDALVQFCSDVASAPFIAVDTEFMRETTYWPKLCLIQAATPTHEAIIDPQADGLDLT 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
++L D IVKVFH A D + K G MFDT A Q +AY L++
Sbjct: 64 PFLDILRDPAIVKVFHAARQDTEIFVK-LGAMPKPMFDTQVAAMAAGFGDQ-VAYDGLVR 121
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D DK + DW RPL + + YA D +L +Y ++ L A G+ + V S
Sbjct: 122 QMLKIDLDKGSRFTDWSRRPLSDAQLTYAIGDVTHLAALYPKLRDRL--AREGRLDWVTS 179
Query: 430 TFTNSRN--------ICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
+ N K KP Y+ F++ A+ WR++ A
Sbjct: 180 EMEDLVNPELYDTTPDKAWKRLKPKKYNAKYLAAFKATAV--------------WREQAA 225
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
+D+D+ G +L + + ++A +P D++ F VP+
Sbjct: 226 QDRDQPRGRILKDEAIDEIATQVPTDVEA-FNRLRSVPK 263
>gi|421615623|ref|ZP_16056645.1| ribonuclease D [Pseudomonas stutzeri KOS6]
gi|409782427|gb|EKN61988.1| ribonuclease D [Pseudomonas stutzeri KOS6]
Length = 359
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 15/283 (5%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + E + +L +E +Q +A+D E+ ++ L+Q+ + Y++D L +R +
Sbjct: 8 VLDDEHLARLCAEWRQLPYVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVR-NWT 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
VL D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 AFAGVLQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E ++YA D +L +Y+ + LS K+ +L
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLS---EDKRAWLLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E EE Y + ++ L QQ L+ L WR+R AR +++
Sbjct: 183 D--GAELVANLQRESD--PEEAYREVKQAWRL-KPQQLAVLKALTAWRERQARARNQPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
VL L +A++ PRD+ + P+TV+ E +LD+
Sbjct: 238 RVLREASLWPLARTQPRDLVTLARIDEMHPRTVRQDGEALLDM 280
>gi|429082709|ref|ZP_19145770.1| Ribonuclease D [Cronobacter condimenti 1330]
gi|426548590|emb|CCJ71811.1| Ribonuclease D [Cronobacter condimenti 1330]
Length = 402
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 115/264 (43%), Gaps = 13/264 (4%)
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
SD MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L
Sbjct: 28 SDLNYQMITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL 87
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-S 363
+ D +L D+N+ K H D++ Q FG+ DT F+ P
Sbjct: 88 TI-TDWAPFQALLQDQNVTKYLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCG 146
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
A L++H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 147 FATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-- 204
Query: 424 QNLVLSTFTNSRNICKL--KYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
T + N C+L + + V + + + L +Q +L+ L WR R A
Sbjct: 205 -------LTAAINECRLMTQRRREVLDPDEAWREINNAWQLRTRQLASLKLLAGWRLRKA 257
Query: 482 RDKDESTGYVLPNHMLLQMAQSIP 505
R++D + +V+ L ++A+ +P
Sbjct: 258 RERDMAVNFVVREENLWKVARHMP 281
>gi|357384625|ref|YP_004899349.1| ribonuclease D [Pelagibacterium halotolerans B2]
gi|351593262|gb|AEQ51599.1| ribonuclease D [Pelagibacterium halotolerans B2]
Length = 386
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 11/259 (4%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT + + + +D E+ +Y CL+Q +T D+ I+D L
Sbjct: 1 MQVITSTRALEAFCKDAATYDFVTVDTEFLRETTYWPKLCLIQAATADRAVIIDPLADDI 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY-- 366
DL E+L D+++ KVFH A DI+ K FG+ +FDT A S++Y
Sbjct: 61 DLAPFAELLADRHVTKVFHAARQDIEIFVKLFGVVPHPIFDTQVAASVCGHG-DSVSYDN 119
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
L++ DK+ + DW HRPL E + YA D +L +Y ++ ++ G
Sbjct: 120 LVRSVVGEQIDKSSRFTDWSHRPLTEKQLNYALADVTHLRDIYGQLRTEIDKTRRGAWVA 179
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
S + ++ E + +N R A AL+ + WR+R A++ D+
Sbjct: 180 DEMAVLESVDTYVIQPEVAWKRVKARVNKPRDLA--------ALQAIAAWRERRAQENDQ 231
Query: 487 STGYVLPNHMLLQMAQSIP 505
G +L + + ++A P
Sbjct: 232 PRGRILKDDAIAELAIQRP 250
>gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165]
gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165]
Length = 375
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 121/265 (45%), Gaps = 17/265 (6%)
Query: 258 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL 317
+ Q+ ++ +Q IA+D E+ R+Y L+Q+ + Y++D L + D +L
Sbjct: 16 LAQMCLQVAEQSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT-DFSPFTALL 74
Query: 318 TDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVDS 376
++N++KV H D++ Q F M DT F+ + A L HY +V+
Sbjct: 75 ANENVLKVLHACGEDLEVFQHYFKQLPQPMLDTQVMAGFVGLGISIGFAKLALHYLEVEL 134
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL---STFTN 433
DK DW PL E +QYA D YLL +Y + DL+ Q V+ +T
Sbjct: 135 DKGASRTDWLSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPW--QTAVVEECATLLA 192
Query: 434 SRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKWRDRIARDKDESTGYVL 492
R I E P + Y I S+A NQQ+ A L+ L KWR A +D + +++
Sbjct: 193 KRQIV----EDP---NKAYKEI--SNAWQLNQQELAILQILAKWRIEEAEKRDLALNFII 243
Query: 493 PNHMLLQMAQSIPRDIQGIFACCNP 517
LLQ+A+ P+ + +P
Sbjct: 244 KEQSLLQIAKLQPKHTSILLEFMHP 268
>gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
Length = 430
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 12/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L E L+ + V H A
Sbjct: 66 VAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-PDLSSLGEALS--GVEWVLHAA 122
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L ++ G+ +FDT A + PR L ++++ +K DW RP
Sbjct: 123 TQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRP 181
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L GK + F I +P +
Sbjct: 182 LPEPWLRYAALDVELLVDLRDALEKELD--RQGKLDWARQEFD---AIASAPPPEP--RK 234
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + H + +Q +REL++ RDRIAR +D S G VL + +++ A ++P ++
Sbjct: 235 DPWRRTSGMHKVRRRRQMAVVRELWETRDRIARRRDVSPGKVLSDAAIVEAALALPANLH 294
Query: 510 GIFA 513
+ A
Sbjct: 295 AMAA 298
>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
Length = 352
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 112/261 (42%), Gaps = 17/261 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I E + + L I ID E + Y CL+QIS D ++D L L
Sbjct: 4 LIDTAEALQAVPPLLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLA-GISL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACKFLPMPRQSLAYLLK 369
+ L E K ++ HGAD D++ L++ G V +FDT A + + SLA L+K
Sbjct: 63 QPLFEAFAGKELI--IHGADYDLRLLRR-VGFTVTAPVFDTMIAARLCGIEEFSLAALIK 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y DV K Q +W RPL YA DTHYLL + ++ +L+ L
Sbjct: 120 RYFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTR---------LD 170
Query: 430 TFTNSRNIC-KLKYEKPVFNEEGYMNIFRSHAL--LNNQQKYALRELYKWRDRIARDKDE 486
R C K + E ++R L + LR L+ WR+ A+ D
Sbjct: 171 RMEWFRQSCDKAVAASAITKERDPEEVWRITGSKDLRGRASAILRALWHWREAEAQAVDR 230
Query: 487 STGYVLPNHMLLQMAQSIPRD 507
T ++L + L++ A + RD
Sbjct: 231 PTFHILHSEQLIEAAAKLDRD 251
>gi|384566551|ref|ZP_10013655.1| ribonuclease D [Saccharomonospora glauca K62]
gi|384522405|gb|EIE99600.1| ribonuclease D [Saccharomonospora glauca K62]
Length = 413
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 13/266 (4%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YI 300
P TP +I +P+ + + L + +A+D E + Y L+QI ++
Sbjct: 22 PAEGTP-DVIADPDTLRAACARLAEGSGALAVDTERASGYRYWPKAYLVQIRREGAGTFL 80
Query: 301 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
+D + LR DL L EV+ K++ V H A D+ L + GL +FDT A +
Sbjct: 81 IDPIALRNDLAPLAEVM--KDVEWVLHAASQDLPCL-AELGLRPPSLFDTELAGRLAGHQ 137
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
R L L++ +K DW RPLP + YA D L+ + D ++ +L+AA
Sbjct: 138 RVGLGTLVEELLGYRLEKGHSAADWSRRPLPIDWLNYAALDVELLVPLRDKLEAELAAA- 196
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
GK L F R + + H + + A+R L++ RD +
Sbjct: 197 -GKLEWALQEFEAVRTAEPPAPRPEPWRRTSGI-----HKIRTPRGLAAVRALWEARDEL 250
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPR 506
AR +D + G +LP+ ++ A + PR
Sbjct: 251 ARKRDRAPGRILPDSAIINAALADPR 276
>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
Length = 409
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 12/278 (4%)
Query: 234 KCEEPKQALPLSDTPL-MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQI 292
K EP ++PL P +IT + ++V E + + +AID E+ R+Y CL+Q+
Sbjct: 12 KRNEPDNSIPLEKLPPDALITTNADLLRVVDEFRGKPFLAIDTEFMRERTYYPQLCLIQV 71
Query: 293 STRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQ 352
K +D L +LE L ++ D++I+KVFH + D++ + G ++DT
Sbjct: 72 GDGTKAVAIDPLAKNLNLEPLWSLMRDESIIKVFHAGNQDMEIFLNEMGGLPSPVYDTQI 131
Query: 353 ACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 410
A Q + Y L+K + DKT + DW RPL + I YA D YL +Y
Sbjct: 132 AGLVCGHGDQ-IGYDSLVKSILGKNVDKTSRFTDWSKRPLTDRQISYALDDVIYLAQIYP 190
Query: 411 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL 470
M LD A+ + N + F + KP E + I H L L
Sbjct: 191 IM-LD-KIASENRTNWLDEEFKKFSDPATY-VTKP---ENAWKRIKIRH--LKAPALMRL 242
Query: 471 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
L WR+ A++++ V+ + L+ +A + P I
Sbjct: 243 MRLAAWREIEAQNRNVPRNRVIRDETLIDLAGTAPNTI 280
>gi|46202610|ref|ZP_00208583.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
Length = 398
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 113/269 (42%), Gaps = 31/269 (11%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI++ E + LK + +D E+ ++Y CL+Q++ D+ +D L DL
Sbjct: 3 MISDTESLAAFCRRLKSAPFVTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPGMDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ D N++KVFH A D++ +FDT A C F S+ Y
Sbjct: 63 TPLFELMADTNVLKVFHAARQDVEIFLHLADAIPTPIFDTQIAAMVCGF----GDSVGYE 118
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L DK+ + DW RPL E IQYA D +L Y +
Sbjct: 119 TLASQLAKARIDKSMRFTDWSIRPLSEKQIQYALADVTHLRVAY--------------EK 164
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYM-----NIFRSHALLNNQQKY--ALRELYKWRD 478
LV N R I L E + E G N +R + ++ L+EL WR+
Sbjct: 165 LVRKLERNGR-IEWLSEEMALLTEPGTYRVDPENAWRRLKPRSTSGRFLAVLKELAAWRE 223
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRD 507
R A+++D +L + L ++A P D
Sbjct: 224 REAQERDLPRQRILRDETLTEIAAHHPTD 252
>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
Length = 384
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 116/281 (41%), Gaps = 49/281 (17%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT ++ L L + +A+D E+ +++ CL+Q++ + + IVD L DL
Sbjct: 4 ITTTPELAALCETLSRSDYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPGLDLA 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY-- 366
++ D + VKVFH A DI+ + G+ +FD+ A C F S++Y
Sbjct: 64 PFYHLMADTSTVKVFHAARQDIEIVFLKSGVVPTPVFDSQVAAMVCGF----GDSISYVN 119
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 426
L+K D DK+ + DW RPL + YA D YL VY ++ L
Sbjct: 120 LVKKTTGADLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYQRLRQTLDKTGR----- 174
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALL-----NNQQKYALR---------- 471
P EE M + S A N Q+ LR
Sbjct: 175 -----------------TPWLQEE--MGVLTSPATYDTSPENAWQRLRLRVKGRKSLGVL 215
Query: 472 -ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
EL WR+R+A+ D G VL + L +A IP +++ +
Sbjct: 216 VELAAWRERLAQQLDVPRGRVLRDDALYDIANQIPVNVEAL 256
>gi|392307585|ref|ZP_10270119.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
citrea NCIMB 1889]
Length = 376
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 17/269 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT Q+ Q VS + Q +AID E+ R+ L+Q+ ++D + D
Sbjct: 5 LITTQVQLNQFVSSISTSQILAIDTEFMRRRTLYPEIALIQVFDGANLALIDPV-CELDF 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR-QSLAYLLK 369
E ++L D I+KV H DI+ QK G MFDT A + L A ++K
Sbjct: 64 EPFWQLLKDDKILKVLHSPSEDIEVFQKFAGFVPHPMFDTQFALQLLGEGNCVGFASMVK 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
DV+ DK+ +W RPL E + YA +D +YLL ++ + ++ ++ +
Sbjct: 124 TLLDVEIDKSESRTNWLQRPLTEKQLDYAASDVYYLLPCFEKIITQIT-----EKKFIEI 178
Query: 430 TFTNSRNI-CKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
S+ I K +E P +E Y++I ++ L + L+EL WR A+ K+ +
Sbjct: 179 VIQESQLIAAKRAFETP--DEYVYLDI-KNAWQLKPRDLAVLKELAAWRRAKAQKKNLAL 235
Query: 489 GYVLPNHMLLQMAQSIP------RDIQGI 511
++L H ++++A+ P R+I GI
Sbjct: 236 SFILKEHNMVEVAKRRPTSLSSLRNIPGI 264
>gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
Length = 392
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT EQ+ + +Q I +D E+ +Y C++QI++ D+ ++D+L DL
Sbjct: 3 LITTSEQLAAACARFAKQPVITVDTEFLRETTYYPLLCVVQIASADEAVVIDSLAPGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ E++ D++++KVFH A DI+ + G+ +FDT A L S+AY L+
Sbjct: 63 KPFFELMADEHVLKVFHAARQDIEIVWHRAGILPHPIFDTQVAAMVLGYG-DSIAYDQLV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+ DKT + DW RPL E + YA +D +L V+ + DL
Sbjct: 122 ERITGHRPDKTHRFTDWSRRPLTEEQVHYAVSDVTHLRDVFAALDADL 169
>gi|383638903|ref|ZP_09951309.1| ribonuclease D [Streptomyces chartreusis NRRL 12338]
Length = 395
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I + + ++++ + +A+D E + Y L+Q+ +
Sbjct: 3 EPREGIP------PVIADEAALARVIAAFEAGSGPVAVDAERASGYRYGQRAYLVQLRRQ 56
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L E L+ + V H A D+ L ++ G+ +FDT A
Sbjct: 57 GAGTALIDPVAC-PDLSALGEALS--GVEWVLHAATQDLPCL-REIGMVPTRLFDTELAG 112
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L +++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 113 RLAGFPRVGLGAMVEGVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 172
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F + + K + M H + +Q +REL+
Sbjct: 173 ELD--RQGKLEWARQEFDAIASAPPPEPRKDPWRRTSGM-----HKVRRRRQLAVVRELW 225
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ RDRIA+ +D S G VL + +++ A +IP ++ + A
Sbjct: 226 QTRDRIAQRRDVSPGKVLGDAAIVEAALAIPANVHALAA 264
>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 445
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 17/278 (6%)
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTRD 296
P A+P P ++ PE +T+ + L +AID E Y L+Q D
Sbjct: 26 PILAMPHEGLP-ELVDSPEALTRCIEALASGTGPVAIDTERAQSFRYTARAYLLQFRRTD 84
Query: 297 KD-YIVDTLKLR------EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD 349
+++D + D L E + + H A D+ L + GLY +FD
Sbjct: 85 SGTWLIDPQAFQPSDGSLADFSALREAIASAEWI--IHAATQDLPCL-VEIGLYPSRLFD 141
Query: 350 THQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
T A + L PR SL +++ + V K DW RPLP I YA D L+ +
Sbjct: 142 TELAGRLLGFPRVSLGTMIEQHFGVHLLKEHSAADWSRRPLPPDWIAYAALDVELLIELR 201
Query: 410 DCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA 469
+ + +L AA GK+ F + ++ + ++P + + + SH + + +
Sbjct: 202 NLVADELVAA--GKKEWADEEFAHLVDVYRHPQQRP---GDPWRHTSGSHHVRSRRGLAL 256
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
+R L++ RD IAR+ D++ G ++P+ + ++A + +D
Sbjct: 257 VRALWEQRDEIARELDKAPGKIVPDKAISELASEVTKD 294
>gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199]
gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199]
Length = 386
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 31/269 (11%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ ++T+ ++ L L +++ +A+D E+ ++Y CL+Q++ D+ VDTL
Sbjct: 1 MTLVTDTASLSALCDRLARERYVAVDTEFMRDKTYYAKLCLVQLAGADEAVAVDTLAPGI 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL L ++ + +++KVFH A D++ +FDT A C F +++
Sbjct: 61 DLAPLYALMANPDVLKVFHAARQDVEIFVHQADAVPAPLFDTQIAAMVCGF----GDAVS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ V DKT + DW HRPL I+YA D +L Y+ + H K
Sbjct: 117 YDRLVRGLTGVKLDKTSRFTDWSHRPLSSRQIEYALADVIHLRPAYEKL--------HRK 168
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI-----FRSHALLNNQQKY--ALRELYKW 476
+ + L E V + + +R + + + K+ LREL W
Sbjct: 169 -------LEKTGRLEWLSEEMAVLTDTATYKVPPEQSWRRLKIRSTKPKFLTVLRELAAW 221
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIP 505
R+R A+ +D +L + L+ +A P
Sbjct: 222 REREAQARDVPRNRILRDDALVDVAAQTP 250
>gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 375
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 9/253 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT EQ+ Q K Q + +D E+ R+ L+Q+ + ++D L++ +D+
Sbjct: 5 IITTTEQLQQRCDSAKTQAAVMLDTEFVRTRTLYPRLGLIQLFDGEHLSLIDPLEI-DDM 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
E L +L D++++KV H D++ Q G M DT FL L+K
Sbjct: 64 EPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMLDTQLMAAFLGHGISTGFGALVK 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V+ DK +W RPL + YA D HYL +Y+ + + A + +
Sbjct: 124 EYVGVELDKGEARTNWLARPLTAKQLDYAAADVHYLKPLYETLLAKVEATGY------ME 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N L+ KPV E+ Y++I + L +Q L+++ WR R A+ +D +
Sbjct: 178 ALQQECNSVMLRRIKPVDPEKAYLDIKNAWQLYPSQLA-VLQKVAAWRVREAQKRDIALN 236
Query: 490 YVLPNHMLLQMAQ 502
+++ L ++A+
Sbjct: 237 FIVKELHLWKLAR 249
>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|418406679|ref|ZP_12979998.1| ribonuclease D [Agrobacterium tumefaciens 5A]
gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|358007172|gb|EHJ99495.1| ribonuclease D [Agrobacterium tumefaciens 5A]
Length = 386
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ + ++VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPLFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQRIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T +I + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMDILESRETYDMHPDDAWLRL--KSRLRKPTELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIFEIAQQQPKDTEAL 254
>gi|429091417|ref|ZP_19154089.1| Ribonuclease D [Cronobacter dublinensis 1210]
gi|426744029|emb|CCJ80202.1| Ribonuclease D [Cronobacter dublinensis 1210]
Length = 369
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q FG+ DT F+ P A L++
Sbjct: 60 APFQSLLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVVASFVGHPLSCGFATLVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 120 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVRDAGW-------- 171
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E Y I + L +Q L+ L WR R AR++D
Sbjct: 172 -LTAALNECRLMTQRRGEVLDPDEAYREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 229
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 230 AVNFVVREEHLWKVARHMPGSL 251
>gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032]
gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032]
Length = 409
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 117/265 (44%), Gaps = 15/265 (5%)
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
SD MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L
Sbjct: 35 SDLNYQMITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL 94
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-S 363
+ E +L D+NI K H D++ Q FG+ DT F+ P
Sbjct: 95 TITE-WAPFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCG 153
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
A L++H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 154 FATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-- 211
Query: 424 QNLVLSTFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
T + N C+L ++ V + +E + I + L +Q L+ L WR R
Sbjct: 212 -------LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRK 263
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIP 505
AR++D + +V+ L ++A+ +P
Sbjct: 264 ARERDMAVNFVVREENLWKVARHMP 288
>gi|429104996|ref|ZP_19166865.1| Ribonuclease D [Cronobacter malonaticus 681]
gi|426291719|emb|CCJ92978.1| Ribonuclease D [Cronobacter malonaticus 681]
Length = 409
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 15/265 (5%)
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
SD MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L
Sbjct: 35 SDLNYQMITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL 94
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-S 363
+ D +L D+N+ K H D++ Q FG+ DT F+ P
Sbjct: 95 TI-TDWAPFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCG 153
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
A L++H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 154 FATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-- 211
Query: 424 QNLVLSTFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
T + N C+L ++ V + +E + I + L +Q L+ L WR R
Sbjct: 212 -------LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRK 263
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIP 505
AR++D + +V+ L ++A+ +P
Sbjct: 264 ARERDMAVNFVVREENLWKVARHMP 288
>gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
Length = 437
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 26/338 (7%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ + ++D + DL L+ L D +V H A
Sbjct: 70 VAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIAC-PDLSGLDAALADAEMV--LHAA 126
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
+ D+ L + GL +FDT A + L P+ L ++++ +K DW RP
Sbjct: 127 NQDLPCL-AEVGLRPRRLFDTELAGRLLGHPKVGLGSMVENVLGFVLEKGHSAVDWSTRP 185
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPE ++YA D L+ + D + +L A GK L F +
Sbjct: 186 LPEDWLRYAALDVELLIELRDALHAELERA--GKLQWALEEFAAILATPPKPPRPDPWRR 243
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M+ R+ +Q +RE++ RDR+AR++D S G VLP+ ++Q+A PR
Sbjct: 244 TSGMHRVRT-----RRQLAIVREVWLARDRLARERDLSPGRVLPDAAIVQLALEAPRTPA 298
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ-PSLDGMKKKQQQQVSPPHD 568
+ A + + H ++ L+A ++ P ++L PS G + P H
Sbjct: 299 ELLALPAMRNRGARRH----QSVWLRAVTRARNLPEDQLPVPSQPG------EGPPPTHR 348
Query: 569 SNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 606
+ A + L R +A DE T +P LLQ
Sbjct: 349 WAERDPQAAKRLATARTVVAALADEHT---MPAENLLQ 383
>gi|429100905|ref|ZP_19162879.1| Ribonuclease D [Cronobacter turicensis 564]
gi|426287554|emb|CCJ88992.1| Ribonuclease D [Cronobacter turicensis 564]
Length = 409
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 15/268 (5%)
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
SD MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L
Sbjct: 35 SDLNYQMITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL 94
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-S 363
+ E +L D+N+ K H D++ Q FG+ DT F+ P
Sbjct: 95 TITE-WAPFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCG 153
Query: 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
A L++H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 154 FATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-- 211
Query: 424 QNLVLSTFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
T + N C+L ++ V + +E + I + L +Q L+ L WR R
Sbjct: 212 -------LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRK 263
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDI 508
AR++D + +V+ L ++A+ +P +
Sbjct: 264 ARERDMAVNFVVREENLWKVARHMPGSL 291
>gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c]
gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c]
Length = 440
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 14/267 (5%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YI 300
P+ TP +IT+ + + L +A D E + Y L+Q+ R +
Sbjct: 18 PVEGTP-PVITDARALADVAERLAAGDGPVAFDAERASGYRYSQRAYLVQVRRRGSGTAL 76
Query: 301 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP 360
+D + L DL V+ + + + V H A D+ L + GL +FDT A + L
Sbjct: 77 IDPVAL-PDLSVIQDKV--GGVEWVLHAASQDLPCL-AELGLRPTTLFDTELAGRLLGYE 132
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
R L +++ +K DW RPLPEP ++YA D L+ + D + ++L A
Sbjct: 133 RVGLGMMVERVLGFGLEKGHSAADWSTRPLPEPWLRYAALDVELLVELRDALAVEL--AE 190
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
GK + F I +P E + H + +Q A+R ++ RD+I
Sbjct: 191 TGKLDFAHQEFA---AIVAAPPREP--RAEPWRRTSGIHRARSRRQLAAVRAMWSARDKI 245
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRD 507
AR +D + G VLP+ ++ + P D
Sbjct: 246 ARTRDIAPGRVLPDSAIIDAVLNAPAD 272
>gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
Length = 438
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 11/258 (4%)
Query: 252 ITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQIS-TRDKDYIVDTLKLRED 309
+T PEQ+ ++V+ +A+D E + Y L+Q+ + ++D L L D
Sbjct: 56 VTVPEQLAEVVARFAAGSGPVALDAERASGYRYSQRAYLVQLRRSGAGTALIDPLPL-PD 114
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L L+ V+ D V H A+ D+ L + GL +FDT A + R LA L +
Sbjct: 115 LSALDAVIADTEWV--LHAANQDLPCL-AELGLRPRRLFDTELAARLAGFERVGLAALTE 171
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+K DW RPLPE + YA D L + D + +L+ GK
Sbjct: 172 QLLGYSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELT--RQGKSQWAEE 229
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
F + + P E + H + + + +R L+ RD+IA +D + G
Sbjct: 230 EFA---ALVQAGTRPPRVRAEPWRRTSGIHRVRGARAQARVRSLWYARDQIAARRDSAPG 286
Query: 490 YVLPNHMLLQMAQSIPRD 507
VLP+ ++ A+ P+D
Sbjct: 287 RVLPDSAIVAAAELDPKD 304
>gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074]
gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074]
Length = 348
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 12/242 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L EV+ D + H A
Sbjct: 69 LAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-PDLSGLGEVVEDAEWL--LHAA 125
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L +D G+ +FDT A + R L ++++ +K DW RP
Sbjct: 126 TQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVLGYSLEKGHSAVDWSTRP 184
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L + D ++ +L A GK + F + K +
Sbjct: 185 LPEPWLRYAALDVELLADLRDALEEEL--AGQGKLDWAHQEFDAIASAPPAPPRKDPWRR 242
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL+ RD+IA+ +D S G VLP+ +++ A ++P D+Q
Sbjct: 243 TSGM-----HKVRRRRQLAVVRELWNARDKIAQRRDISPGKVLPDAAIVEAALALPVDVQ 297
Query: 510 GI 511
+
Sbjct: 298 AL 299
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 556 KKKQQQQVSPPHDSNNQQKYAL-RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 614
+K ++ S H +++ A+ REL+ RD+IA+ +D S G VLP+ +++ A ++P D
Sbjct: 236 RKDPWRRTSGMHKVRRRRQLAVVRELWNARDKIAQRRDISPGKVLPDAAIVEAALALPVD 295
Query: 615 IQGI 618
+Q +
Sbjct: 296 VQAL 299
>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
Length = 379
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 149/357 (41%), Gaps = 27/357 (7%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L E+A+DLE + +++ C +Q++T ++ DTL D +L ++ D K
Sbjct: 14 LATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGVDASLLAPLMADPERTK 73
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
FH A D+++L + G+ V G+FDTH+A L P+ LA + + V+ K Q D
Sbjct: 74 YFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLGWPKVGLADIARERLGVELPKEHQQSD 132
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
+ RPLP +Y D YL + ++ A ++ + +C+ +
Sbjct: 133 FSLRPLPPEMREYIANDVRYLCELGRQVREACRTA-----GILEEVLLDCDRMCEEAVAR 187
Query: 445 PVFNEEGYMNIFRS-----HALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 499
P + + RS L + +A L+ R A + G +L N +
Sbjct: 188 PDVGADFKPKLPRSGLSPVQLTLAHAVAHA---LHTKRLEWAEKANVPMGRMLSNMAIGD 244
Query: 500 MAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQ 559
+A +P + + + V+EH + AI+ E L+ S G K
Sbjct: 245 IAVKLPANPKELARAAGVRGGFVREHGEETLAIV-----------RELLELSRKGELKPG 293
Query: 560 QQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 616
++ D++ +++ L +R A + + VLPN +L +A PR ++
Sbjct: 294 REAKDSARDAHRRKRE--EALKAFRSEKAAARKVTPSVVLPNALLEALATHPPRSVE 348
>gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
gi|365968123|ref|YP_004949685.1| ribonuclease D [Aggregatibacter actinomycetemcomitans ANH9381]
gi|415770428|ref|ZP_11484845.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416075082|ref|ZP_11584911.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|416084869|ref|ZP_11587098.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|444338504|ref|ZP_21152335.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444346929|ref|ZP_21154881.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348006509|gb|EGY46926.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348010310|gb|EGY50368.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|348656876|gb|EGY74480.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D17P-2]
gi|365747036|gb|AEW77941.1| ribonuclease D [Aggregatibacter actinomycetemcomitans ANH9381]
gi|443541035|gb|ELT51519.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443544978|gb|ELT54857.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 385
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 16/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 16 VVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDRVALIDPLPI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
++L D N+VK+ H D+ Q F M DT FL + A L++
Sbjct: 75 SPFIKLLADTNLVKILHACSEDLDVFQHYFQQLPRPMCDTQVMAHFLGFAGSTGFATLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y+ M+ L+ Q++V
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYEQMQQQLTQTEW--QSVV-- 190
Query: 430 TFTNSRNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
N C+ K + Y I + LN + L+ L KWR A +D
Sbjct: 191 -----ENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKRD 244
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ +V+ L Q+A+S P+ I +
Sbjct: 245 LALNFVVRAENLWQVAKSNPKHISTL 270
>gi|441517701|ref|ZP_20999435.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441455575|dbj|GAC57396.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 396
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 15/238 (6%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQI-STRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
IA+D E + Y L+Q+ T +++D + E L+ + E L + + H A
Sbjct: 31 IAVDTERASGYRYSQRAYLIQLKRTGSGSFLIDPIANPEALDPVIEAL--RGPEWILHAA 88
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D D+ L + G +FDT A + L +P+ +LA ++ + + K DW HRP
Sbjct: 89 DQDLPCL-TELGFECTTLFDTELAGRLLNLPKVNLAAMVAEFLQLGLAKGHGAADWSHRP 147
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVF-- 447
LP+ + YA D L+ + D M L A GK F +R + KP
Sbjct: 148 LPDDWLNYAALDVEVLVELRDAMHSALDEA--GK-------FEWARQEFAYELTKPPAPP 198
Query: 448 NEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+ + H L N +Q +REL+ R+ IA +D + G VLP+ ++ A + P
Sbjct: 199 RPDRWRRTSNIHTLRNQRQLAIVRELWTAREEIAARRDVAPGRVLPDSAIITAAVAAP 256
>gi|339493381|ref|YP_004713674.1| ribonuclease D [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338800753|gb|AEJ04585.1| ribonuclease D [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 374
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 134/287 (46%), Gaps = 12/287 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + + +L +E +Q +A+D E+ ++ L+Q+ + Y++D L +R D
Sbjct: 8 VVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVR-DWR 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E ++YA D +L +Y+ + LS K+ VL
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLS---DDKRAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E EE Y + ++ L QQ L+ L WR+R AR +++
Sbjct: 183 D--GAELVANLQRESD--PEEAYREVKQAWRL-KPQQLAVLKVLTAWRERQARARNQPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
VL L +A++ PRD+ + P+TV++ + A+I +A
Sbjct: 238 RVLREASLWPLARTQPRDLVTLARIDEMHPRTVRQDGEALLAMIREA 284
>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
Length = 389
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 156/380 (41%), Gaps = 27/380 (7%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
+P+ + + + + L E+A+DLE + +++ C +Q++T ++
Sbjct: 1 MPIYPQGALDVVDASSAQEAARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLF 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
DTL D +L ++ D K FH A D+++L + G+ V G+FDTH+A L P+
Sbjct: 61 DTLAPGVDASLLAPLMADPERTKYFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLGWPK 119
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
LA + + V+ K Q D+ RPLP +Y D YL + ++ A
Sbjct: 120 VGLADIARERLGVELPKEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTA-- 177
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS-----HALLNNQQKYALRELYKW 476
++ + +C+ +P + + RS L + +A L+
Sbjct: 178 ---GILEEVLLDCDRMCEEAVARPDVGADFKPKLPRSGLSPVQLTLAHAVAHA---LHTK 231
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
R A + G +L N + +A +P + + + V+EH + AI+
Sbjct: 232 RLEWAEKANVPMGRMLSNMAIGDIAVKLPANPKELARAAGVRGGFVREHGEETLAIV--- 288
Query: 537 RLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTG 596
E L+ S G K ++ D++ +++ L +R A + +
Sbjct: 289 --------RELLELSRKGELKPGREAKDSARDAHRRKRE--EALKAFRSEKAAARKVTPS 338
Query: 597 YVLPNHMLLQMAQSIPRDIQ 616
VLPN +L +A PR ++
Sbjct: 339 VVLPNALLEALATHPPRSVE 358
>gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
Length = 390
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 9/253 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ITE + + ++ S+ ++ + +D E+ R+Y L+Q+ D ++D L D+
Sbjct: 24 IITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDTLSLIDPTVL-TDM 82
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D +++KV H D++ FG V M DT FL + A L++
Sbjct: 83 SAFTELLNDASVMKVLHACGEDLEVFHNAFGAIPVPMVDTQIMAAFLGHGLSTGFAALVE 142
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +V+ DK+ DW RPL + ++YA D HYLL +Y+ + + A + S
Sbjct: 143 QYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAGWWQAAQQES 202
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
S+ + K + Y++I + L ++ L+ L WR + A +D +
Sbjct: 203 ELQASKRV------KTPNADNAYLDI-KGAWQLKPRELAILKPLATWRMQEAIRRDLALN 255
Query: 490 YVLPNHMLLQMAQ 502
+V H LL +A+
Sbjct: 256 FVFKEHDLLTVAR 268
>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
Length = 382
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 125/264 (47%), Gaps = 17/264 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I+ EQ+ + L I +D E+ +Y C++Q+++RD+ +VDTL DL
Sbjct: 3 LISTTEQLASACTRLASHPVITVDTEFLRETTYYPLLCVVQMASRDEAVVVDTLAPGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ +++ ++N++KVFH A DI+ + G+ +FDT A L S+AY L+
Sbjct: 63 KPFFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQLV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV- 427
+ DKT + DW RPL + + YA +D +L V+ + DL G+ + V
Sbjct: 122 ERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADLK--QRGRSDWVS 179
Query: 428 --LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
+ T+ + Y+ F+ E ++ + ++ L E+ WR++ A+ +D
Sbjct: 180 EEMEVLTSPKT-----YD---FHPESAWERLKTR-VRKPKELAVLMEVAAWREQEAQTRD 230
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQ 509
VL + L +A P ++
Sbjct: 231 VPRSRVLKDDALGDIATHAPTSLE 254
>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
Length = 402
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 124/267 (46%), Gaps = 16/267 (5%)
Query: 243 PLSDTPLMMITEP--EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD-KDY 299
P TP ++ T+ E+ QL+S K +AID+E Y L+QI D +
Sbjct: 12 PHEGTPDVIDTQVGLEKAAQLLS--KSTMPVAIDVERAVGYRYSHRAYLVQIRREDVGTF 69
Query: 300 IVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM 359
++D+ L DL +LNE L N V + H AD DI L+ GL + +FDT A + L
Sbjct: 70 LIDSGTL-PDLSILNEPLN--NAVWILHDADQDIASLRM-CGLEIPELFDTMLAARLLGF 125
Query: 360 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
R LA + + V DK Q DW RPLP P ++YA D L +Y+ M L A
Sbjct: 126 QRFGLAAVCEQILGVTLDKNHQSDDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKA 185
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ F NI +KP + E + N+ + + + L EL+K R+R
Sbjct: 186 --NRWEWAQQEF---HNILTRPTKKP--DSEPWRNLRGMGKIRSRRHLAILEELWKTRER 238
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPR 506
IA + D ++ N L+ +A + PR
Sbjct: 239 IAAEIDLEPTRLIKNRTLVALAFNPPR 265
>gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96]
gi|387871111|ref|YP_005802484.1| protein rnd [Erwinia pyrifoliae DSM 12163]
gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96]
gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163]
Length = 369
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 13/258 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT ++ + ++ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNAALSDVCLRARRVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLPI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L D+ ++K H D++ Q +FG+ M DT F P A +++
Sbjct: 60 TPFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLSCGFATIVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + DK+ DW RPL E +YA D YLL + + + AA + +
Sbjct: 120 SFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQ-----MAA 174
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
R +C+ + KP +E Y I + L QQ ALR + WR IAR+KD +
Sbjct: 175 ALDECRLLCQRRTSVLKP---QEAYREITNAWQL-RPQQLAALRLMAAWRLEIAREKDMA 230
Query: 488 TGYVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 231 VNFVVREENLWKVARFMP 248
>gi|452749487|ref|ZP_21949248.1| ribonuclease D [Pseudomonas stutzeri NF13]
gi|452006600|gb|EMD98871.1| ribonuclease D [Pseudomonas stutzeri NF13]
Length = 374
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + E +T+L +E +Q +A+D E+ ++ L+Q+ + Y++D L +R D
Sbjct: 8 VLDDEHLTRLCAEWRQLPYVAVDTEFMRVDTFYPIAGLIQVGDGRRAYLIDPLSVR-DWS 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 SFAALLQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL + ++YA D +L +Y+ + LS K+ VL
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSDMQVRYAAEDAQHLAELYEALLPKLS---EDKRAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E E Y ++ ++ L QQ L+ L WR+R AR +++
Sbjct: 183 D--GAELVTNLQRESD--PNEAYRDVKQAWRL-KPQQLAVLKVLTAWRERQARARNQPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
VL L +A++ PRD+ + + P+TV++
Sbjct: 238 RVLREASLWPLARTQPRDLVTLARIEDMHPRTVRQ 272
>gi|392943949|ref|ZP_10309591.1| ribonuclease D [Frankia sp. QA3]
gi|392287243|gb|EIV93267.1| ribonuclease D [Frankia sp. QA3]
Length = 520
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 12/243 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A D E + Y L+QI R +VD + L DL V+ E + D V H A
Sbjct: 46 VAFDAERASGYRYSQRAYLVQIRRRGAGSLLVDPIPL-GDLSVIQEAVGDAEWV--LHAA 102
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + L R L +++ +K DW RP
Sbjct: 103 SQDLPCL-AELGLRPSLLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAADWSTRP 161
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L +Q+ + I +P
Sbjct: 162 LPEPWLRYAALDVELLVELRDALEAELI-----EQDKIEFARQEFAAIAAAPPREP--RA 214
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E + H + +Q A+R ++ RDR+AR +D + G VLP+ ++ + P D
Sbjct: 215 EPWRRTSGIHRARSRRQLAAVRAMWTARDRMARARDVAPGRVLPDSAIMDAVLNAPADTA 274
Query: 510 GIF 512
+
Sbjct: 275 ALI 277
>gi|385788545|ref|YP_005819654.1| ribonuclease D [Erwinia sp. Ejp617]
gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617]
Length = 369
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 13/258 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT ++ + ++ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNAALSDVCLRARRVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLPI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L D+ ++K H D++ Q +FG+ M DT F P A +++
Sbjct: 60 TPFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLSCGFATIVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + DK+ DW RPL E +YA D YLL + + + AA + +
Sbjct: 120 SFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQ-----MAA 174
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
R +C+ + KP +E Y I + L QQ ALR + WR IAR+KD +
Sbjct: 175 ALDECRLLCQRRTSVLKP---QEAYREITNAWQL-RPQQLAALRLMAAWRLEIAREKDMA 230
Query: 488 TGYVLPNHMLLQMAQSIP 505
+V+ L ++A+ +P
Sbjct: 231 VNFVVREENLWKVARFMP 248
>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
Length = 383
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 7/264 (2%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I E++ Q+ +QQ +A+D E+ +Y L+Q+ ++ ++D L + D
Sbjct: 13 LIQNNEELAQVCQLARQQSAVALDTEFMRISTYYPKLGLIQLYDGERVSLIDPLSI-TDF 71
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D+ + K+ H + D+ ++F M DT +FL + LA L+
Sbjct: 72 SPFVELLRDQQVTKILHACNEDLLVFLQEFDALPQLMMDTQIMARFLGFANSAGLAKLVL 131
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK +W RPL +QYA D YLL VY M+++L A + Q ++
Sbjct: 132 HYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIEL-AQSPWLQAVIDD 190
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
KL P + Y++I LN + L+ L KWR A ++ +
Sbjct: 191 CQLAISKTSKLDDRDP---NKAYLDIPNVWK-LNPLELARLQLLAKWRQETAMARNLALS 246
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFA 513
YV+ + L ++A++ PR+ + A
Sbjct: 247 YVVKSDNLWKVAKNNPRNTSEMLA 270
>gi|418295976|ref|ZP_12907820.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539408|gb|EHH08646.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
Length = 386
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ + ++VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPLFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T +I + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMDILESRDTYDMHPDDAWLRL--KSRLRKPTELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIFEIAQQQPKDAEAL 254
>gi|321450988|gb|EFX62799.1| hypothetical protein DAPPUDRAFT_269697 [Daphnia pulex]
Length = 256
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 39/181 (21%)
Query: 395 IQYARTDTHYLLYVYDCMKLDL--------------------------SAAAHGKQ---- 424
+ YAR DTHYL+Y+Y+ +K DL ++ + Q
Sbjct: 2 VNYAREDTHYLIYIYERLKQDLYSRHCLGEVKKTPEMKKGTPEEPKDRNSKSKSSQLTPV 61
Query: 425 -----NLVLSTFTNSRNICKLKYEKPVFNE---EGYMNIFRSHALLNNQQKYALRELYKW 476
N VL + NSR++C ++ P NE + + ++ + +LNNQQ YAL+E++ W
Sbjct: 62 NEKGVNHVLQVWNNSRSVCLRQFRMPTLNEMYSKFHSSLNKEEKMLNNQQAYALQEIFSW 121
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
RDR+AR+ DES +V+ ++L + + + + I + + ++V +H+ +H +I KA
Sbjct: 122 RDRVARELDESPFFVMSKFVMLNIINELHNEPEKILEPIS-LHRSVHQHLPQLHGVIAKA 180
Query: 537 R 537
+
Sbjct: 181 K 181
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 517 PVPQTVKEHVLDI----HAIILKA-RLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNN 571
PV + HVL + ++ L+ R+ +L + K SL+ K+++ + NN
Sbjct: 60 PVNEKGVNHVLQVWNNSRSVCLRQFRMPTLNEMYSKFHSSLN----KEEKML------NN 109
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ YAL+E++ WRDR+AR+ DES +V+ ++L + + + + I + + ++V +
Sbjct: 110 QQAYALQEIFSWRDRVARELDESPFFVMSKFVMLNIINELHNEPEKILEPIS-LHRSVHQ 168
Query: 632 HVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHD-SMDCLNYKGLPPV 689
H+ +H +I KA+ + P L + KK S H+ S + N+ G P+
Sbjct: 169 HLPQLHGVIAKAKAIAIQS-----SPMLTKKQTKKSGAASSSAHELSKNKNNFHGESPL 222
>gi|408788884|ref|ZP_11200598.1| ribonuclease D [Rhizobium lupini HPC(L)]
gi|408485322|gb|EKJ93662.1| ribonuclease D [Rhizobium lupini HPC(L)]
Length = 386
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ + +VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPLFELMANPGVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T +I + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMDILESRDTYDMHPDDAWLRL--KSRLRKPTELAILKFIAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIFEIAQQQPKDAEAL 254
>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
Length = 371
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 9/253 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT P+Q+ ++ ++ + + +D E+ R+Y L+Q+ + ++D + +D+
Sbjct: 5 IITRPDQLEKVCAQARNADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPTVI-DDM 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+L D +++KV H D++ FG M DT FL + A L++
Sbjct: 64 TAFVHLLKDTSVLKVLHACGEDLEVFNNSFGCLPYPMVDTQLMAAFLGHGLSTGFASLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V+ DK+ DW RPL + + YA D HYLL +Y+ + +++ A + S
Sbjct: 124 SYLGVELDKSESRTDWLARPLTDKQLDYAAADVHYLLPLYEKLLEEITQAGWWEAAQQES 183
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
++ I L EK + +G + S L L+ L WR + A +D +
Sbjct: 184 DLLATKRIKSLDPEKAYLDVKGAWQLKPSELAL-------LKPLATWRFKEAIRRDLALN 236
Query: 490 YVLPNHMLLQMAQ 502
+V H LL +A+
Sbjct: 237 FVFKEHDLLTIAR 249
>gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083]
gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083]
Length = 385
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 146/329 (44%), Gaps = 33/329 (10%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD----YIVDTL 304
++ IT E + + E K+ + +D E+ R+Y CL+Q++ D +VD L
Sbjct: 1 MLTITTTEALAEFCEEAKKHAYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNGCLVDPL 60
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
LE L ++ D ++VKVFH A DI+ Q D G+ +FDT A Q +
Sbjct: 61 VEGISLEPLYDLFRDTSVVKVFHAARQDIEIFQVDAGVIPTPLFDTQVASMVCGFGEQ-V 119
Query: 365 AY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
Y L++ + DK+ + DW RPL + +YA D +L VY+ + L G
Sbjct: 120 GYETLVRKIAKQEIDKSSRFTDWSRRPLSDAQAKYALADVTHLRQVYEFLAKKLK--DQG 177
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVFNEEGYM----NIFRSHALLNNQQKY--ALRELYKW 476
+ + V K + N + Y+ N ++ + NN ++ +REL ++
Sbjct: 178 RSHWVDEEM------------KILNNPDTYITLPENAWKRVKIRNNGARFLAIVRELARF 225
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
R+ A+ K+ V + L+++A + P+D G + + + DI ILKA
Sbjct: 226 REDYAQTKNVPRSRVYKDDALVELASTKPKD-HGDLGRSRLLLREARRG--DIAEGILKA 282
Query: 537 RLQSLTKPVEKLQPSLDGMKKKQQQQVSP 565
L P L + +K ++ QV+P
Sbjct: 283 VKTGLACPESDLPKA---NRKNERLQVNP 308
>gi|424910030|ref|ZP_18333407.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846061|gb|EJA98583.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 386
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
L E++ + ++VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPLFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T +I + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMDILESRDTYDMHPDDAWLRL--KSRLRKPTELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIFEIAQQQPKDAEAL 254
>gi|392550649|ref|ZP_10297786.1| RNase D, processing tRNA s [Pseudoalteromonas spongiae
UST010723-006]
Length = 375
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 16/269 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD-TLKLRED 309
ITE +++ V+ + +A+D E+ R+ L+QI D+ ++D TL L D
Sbjct: 5 FITEQQELDSAVASYNNKSVLAVDTEFMRRRTLYPELALLQIYDGDRICLIDPTLDL--D 62
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L +++ + NI+KV H D++ + +FDT A L R + + +
Sbjct: 63 LSSFWQLMENPNIIKVLHSPSEDLEVFARHGNCTPAPLFDTQFALSLLG-ERNCVGFANM 121
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
++ + DK+ +W RPL + + YA D YL+ ++ +K L+ KQ +V
Sbjct: 122 VEMLLEEQIDKSESRTNWLQRPLTKAQLDYAAADVFYLMPCFNIIKEKLN---DDKQGIV 178
Query: 428 LSTFTNSRNIC-KLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
F S I K KYE P+ E Y++I ++ LN +Q L++L WR AR+K+
Sbjct: 179 ---FGESAVIANKRKYETPL--ELAYLDI-KNAWQLNPKQLAVLQQLAAWRLNRAREKNL 232
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACC 515
+ +++ H+L ++A++ P + C
Sbjct: 233 ALNFIVKEHILFEIAKTQPTHFGALKRLC 261
>gi|418466011|ref|ZP_13036943.1| ribonuclease D [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755509|gb|EHK89673.1| ribonuclease D [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 385
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 16/261 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D + +D
Sbjct: 16 VVTDDAELARVCQTARQQSAVALDTEFVRVRTLYPKLGLIQLYGGDEVALIDPTHI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D N+VK+ H D+ Q F M DT FL + A L++
Sbjct: 75 SPFIELLADSNVVKILHACSEDLDVFQHYFQQLPRPMCDTQVVAHFLGFAGSTGFATLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y+ M+ L A Q+ V
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDAQLQYAAADVWYLLPLYEQMQAQL--AQTEWQSAV-- 190
Query: 430 TFTNSRNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
N C+ K + Y I + LN + L+ L KWR A +D
Sbjct: 191 -----ENECEFLLNKRAQTTKEPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKRD 244
Query: 486 ESTGYVLPNHMLLQMAQSIPR 506
+ +V+ L Q+A+S P+
Sbjct: 245 LALNFVVRAENLWQVAKSNPK 265
>gi|262276193|ref|ZP_06054002.1| ribonuclease D [Grimontia hollisae CIP 101886]
gi|262220001|gb|EEY71317.1| ribonuclease D [Grimontia hollisae CIP 101886]
Length = 405
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 15/256 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ITEP Q+ ++ + +Q + +D E+ R+ L+Q+ + ++D ++L +DL
Sbjct: 36 IITEPSQLERVCQQARQVPAVMLDTEFVRTRTLYPRLGLIQLYDGETLSLIDPIEL-DDL 94
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
L +LTD+++VKV H D++ G M DT FL + A L++
Sbjct: 95 SPLWGLLTDESVVKVLHACSEDLEVFYHYAGAMPTPMVDTQIMAAFLGHGLSTGFASLVE 154
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG---KQNL 426
Y V DK DW RPL E ++YA D +YLL +Y+ + +SAA KQ
Sbjct: 155 EYLVVTLDKGEARTDWCARPLSEKQLEYAAADVYYLLPLYNELSKRVSAAGWDEAVKQEC 214
Query: 427 VLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
L + R K +P E+ Y++I ++ L +Q L++L WR R A+ +D
Sbjct: 215 AL--MASKRG----KTPEP---EKAYLDI-KNAWQLRPKQLAVLQKLASWRLREAQRRDL 264
Query: 487 STGYVLPNHMLLQMAQ 502
+ +V+ L +MA+
Sbjct: 265 ALNFVVRELHLWKMAR 280
>gi|357030453|ref|ZP_09092397.1| ribonuclease D [Gluconobacter morbifer G707]
gi|356415147|gb|EHH68790.1| ribonuclease D [Gluconobacter morbifer G707]
Length = 398
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 29/273 (10%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+++T E V ++ +L+Q+ + ID E+ R+Y CL+Q++ R+ ++DTL D
Sbjct: 14 VLLTTTEDVVRVCEKLQQEPFVTIDTEFVRERTYWPELCLVQLAGREDVVLIDTLAPGID 73
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L ++L + + +KVFH A D++ F V +FDT A Q + Y L
Sbjct: 74 LTALGQLLAEPDCIKVFHAARQDLEIFLHIFDRLPVSVFDTQVAAMVAGFGDQ-VGYDSL 132
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA-----AHG 422
+ DK + DW RPL + I YA D +L VY ++ L A
Sbjct: 133 VGAITGRSIDKAHRFSDWAARPLTKAQIAYAAADVTHLRTVYLALRKQLEEQGRLHWADA 192
Query: 423 KQNLVL--STFT-NSRNIC-KLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRD 478
+Q ++ STF + R + KLK N + LRE+ WR+
Sbjct: 193 EQGVLTEESTFRPDPRRLWEKLKARTS-----------------NRRMLGVLREIVAWRE 235
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ A++ + ++ + LL++A P+D+ +
Sbjct: 236 QEAQNANLPRQRLIRDESLLEVAAIRPQDVDAL 268
>gi|378549176|ref|ZP_09824392.1| hypothetical protein CCH26_03785 [Citricoccus sp. CH26A]
Length = 385
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 12/243 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+QI +++D +DL V+ E LT + + H A
Sbjct: 18 VAVDAERASGFRYGQRAFLVQIKREGAGIWLIDPEAF-DDLAVIQESLT--GVEWILHAA 74
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + G++ +FDT A + L +PR LA +L+ V K DW RP
Sbjct: 75 TQDLPCL-SELGMWPDRLFDTELAGRILGLPRVGLASVLEQLLGVTLAKEHSAADWSKRP 133
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPE ++YA D L+ + M L A+ GK + F R P
Sbjct: 134 LPEDWLRYAALDVELLVELRAAMVGMLEAS--GKLDWAEEEFEAIRTT-----PLPGPRT 186
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + H L QQ +REL++ R+ +AR++D + G ++P+ ++ A + P +
Sbjct: 187 DPWRRTSGMHKLRRPQQLAVVRELWEAREALARNRDTAPGRLIPDSAIVSAAAAQPSTVP 246
Query: 510 GIF 512
+
Sbjct: 247 ALL 249
>gi|111221533|ref|YP_712327.1| ribonuclease D [Frankia alni ACN14a]
gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a]
Length = 545
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 12/243 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A D E + Y L+QI R ++D + L DL V+ E + D V H A
Sbjct: 65 VAFDAERASGYRYSQRAYLVQIRRRGAGSLLIDPVPL-GDLTVIQEAVGDAEWV--LHAA 121
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + L R L +++ +K DW RP
Sbjct: 122 SQDLPCL-AELGLRPALLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAADWSTRP 180
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L K F I +P
Sbjct: 181 LPEPWLRYAALDVELLVELRDALEAEL--IEQDKLEFARQEFA---AIVAAPPREP--RA 233
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E + H + +Q A+R ++ RDR+AR +D + G VLP+ ++ + P D
Sbjct: 234 EPWRRTSGIHRARSRRQLAAVRAMWTARDRMARTRDVAPGRVLPDSAIMDAVLNAPADTA 293
Query: 510 GIF 512
+
Sbjct: 294 ALI 296
>gi|359790885|ref|ZP_09293762.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253146|gb|EHK56314.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
Length = 355
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 40/275 (14%)
Query: 262 VSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKN 321
++ L++ + +D E+ +Y CL+Q++ +VD L L DL ++ ++
Sbjct: 14 IAALEKSSFVTVDTEFIRETTYWPELCLIQMAAPGVSALVDPLSLDIDLAPFFALMANEA 73
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY--LLKHYCDVDS 376
+ KVFH A DI+ + GL +FDT A C F S++Y L++
Sbjct: 74 VTKVFHAARQDIEIVFHLGGLLPHPVFDTQVAAMVCGF----GDSVSYDQLVQRITGAHL 129
Query: 377 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK--LDLSAAAHG---KQNLVLSTF 431
DK+ + DWRHRPL + ++YA D +L+ VY +K L+ AH + ++ S
Sbjct: 130 DKSSRFTDWRHRPLSDKQLEYALADVTHLIEVYQHLKTQLERDNRAHWLNEEMEILTSRE 189
Query: 432 T------NSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
T ++ K++ KPV + ++ + WR+R ARD++
Sbjct: 190 TYDPHPDDAWKRLKMRLRKPV-------------------ELAVVQAVAAWREREARDRN 230
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 520
G VL + + ++AQ PRD + A VP+
Sbjct: 231 VPRGRVLKDDAIYEVAQQQPRDAAAL-ARLRTVPK 264
>gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
Length = 383
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT E + + L + + +D E+ +Y CL+Q++ D + IVD L DL
Sbjct: 3 MITTTEALAAFCARLAAHEFVTVDTEFLRETTYWPELCLIQMAGPDDEGIVDPLAEGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ D ++VKVFH A DI+ + L +FDT A C F +S++Y
Sbjct: 63 KPFFELMADTSVVKVFHAARQDIEIMVHRGDLVPHPIFDTQVAAMVCGF----GESISYD 118
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ DK+ + DW RPL + + YA D +L VY ++L A G+ +
Sbjct: 119 QLVSRITGAHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVY--LELLSRLKAEGRSH 176
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
V + + E M + + L Q A WR+R A+ ++
Sbjct: 177 WVADEMAVLESRATYEIEPSDAWRRLKMRVRKPVELCVLQHAAA------WREREAKARN 230
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
G +L + L ++AQ P D++ +
Sbjct: 231 VPRGRILKDDALYEVAQQQPADVEAL 256
>gi|387889084|ref|YP_006319382.1| ribonuclease D [Escherichia blattae DSM 4481]
gi|414595188|ref|ZP_11444817.1| ribonuclease D [Escherichia blattae NBRC 105725]
gi|386923917|gb|AFJ46871.1| ribonuclease D [Escherichia blattae DSM 4481]
gi|403193863|dbj|GAB82469.1| ribonuclease D [Escherichia blattae NBRC 105725]
Length = 374
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 15/259 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT E + ++ +Q + +D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 6 MITTNEALAEVCQAARQFPVLTLDTEFVRTRTYYPQLGLIQLYDSERISLIDPLAI-SDW 64
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K+ H D++ FG+ M DT F P A L++
Sbjct: 65 SPFKALLADRNVTKILHAGSEDLEVFANSFGMMPDPMIDTQVLAAFCGRPLSCGFATLVE 124
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
YC V DK+ DW RPL E +YA D ++LL + KL G + +
Sbjct: 125 AYCGVVLDKSESRTDWLARPLTERQCEYAAGDVYWLLPI--ARKLIDETQTSGWMDAAMD 182
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
C+L + V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 183 E-------CRLMMARRADVLDPQEAWREIGNAWQ-LRTRQLGCLQLLASWRLRKARERDM 234
Query: 487 STGYVLPNHMLLQMAQSIP 505
+ +++ L Q+A+ +P
Sbjct: 235 AVNFIVREEHLWQVARYMP 253
>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
Length = 399
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 117/264 (44%), Gaps = 9/264 (3%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ IT+ ++ +AID E+ ++Y CL+Q+ T D+ IVD + D
Sbjct: 19 VFITDQAELEAFAKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAV-SD 77
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L VL + +I+K+ H D++ L ++ GL +FDT A L +Q L+
Sbjct: 78 LGVLAPLFQSSSIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALLGHTQQIGYGSLV 137
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
C V K DW RPL I YA D YL +Y M +L G+ + +
Sbjct: 138 SAVCGVQLAKMDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERL--GRIHWLD 195
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + L + P + Y + R L+ +Q A RE+ WR++ ARD+D
Sbjct: 196 PDFAALID-PALYVDDP---RDRYRRLKRV-GQLSRRQLSAAREVAAWREKRARDRDIPR 250
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIF 512
+V+ + +++ + R I +F
Sbjct: 251 KWVMTDEQVVEACKREARTIDSLF 274
>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
Length = 388
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + + +EL + + I D E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALAEACTELAKSEFITTDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ + N+VKVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 TPMFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGF----GDSISYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ +V DK+ + DW RPL E + YA D +L VY +K L ++
Sbjct: 117 QLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLE---REGRS 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
L L T NI + + + ++ ++ + L + L+ + WR+R AR ++
Sbjct: 174 LWL---TEEMNILESRDTYDMHPDDAWLRL--KSRLRKPTELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDGIFEIAQQQPKDAEAL 254
>gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064]
gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
Length = 428
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 12/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L E L + H A
Sbjct: 66 VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-PDLSPLGEALDGAEWI--LHAA 122
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L +D G+ +FDT A + PR L +++ +K DW RP
Sbjct: 123 TQDLPCL-RDIGMAPALLFDTELAGRLAGFPRVGLGAMVESVLGYALEKGHSAVDWSTRP 181
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L A GK F K +
Sbjct: 182 LPEPWLRYAALDVELLIDLRDALEEEL--AEQGKLEWARQEFAAIAAAPPPAPRKDPWRR 239
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL+ RD +A+ +D S G VL + +++ A ++P +Q
Sbjct: 240 TSGM-----HKVRRRRQMAVVRELWTARDAVAQRRDVSPGKVLSDSAIIEAALAVPPTVQ 294
Query: 510 GIFA 513
+ A
Sbjct: 295 ALTA 298
>gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130]
gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130]
Length = 383
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 17/262 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I +++ + Q + +D E+ ++ CL+QI+ D + IVD + DL
Sbjct: 3 IIETTQELATACKDFAQHDYVTVDTEFLRETTFWPILCLIQIAGPDDECIVDPMADGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ E++ D ++VKVFH A D++ + GL +FDT Q + S+AY L+
Sbjct: 63 QPFFELMADTSVVKVFHAARQDVEIVYHLGGLVPKPLFDT-QVAAMVCGYGDSVAYNALV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV- 427
DK+ + DW RPL + YA D +L VY +K DL +++ V
Sbjct: 122 SRITGGVIDKSSRFTDWARRPLTTKQLDYALADVTHLRDVYQSLKADLE--KKNRKHWVD 179
Query: 428 --LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
+ TN Y+ PV E+ + + + ++ ++ + +WR+ ARD+D
Sbjct: 180 EEMDVLTNPET-----YDLPV--EKAWSRL--KMRVRKPRELAVMKFVAQWREEQARDRD 230
Query: 486 ESTGYVLPNHMLLQMAQSIPRD 507
G V+ + + ++AQ PRD
Sbjct: 231 VPRGRVVKDDAIYEIAQQQPRD 252
>gi|256825389|ref|YP_003149349.1| ribonuclease D [Kytococcus sedentarius DSM 20547]
gi|256688782|gb|ACV06584.1| ribonuclease D [Kytococcus sedentarius DSM 20547]
Length = 431
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 20/238 (8%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+AID E + Y L+Q+ + +VD + + D+ L E L V H A
Sbjct: 36 VAIDAERASGHRYGNDAYLVQLRRQGAGTLLVDPMGI-TDMSPLAEALDGPEWV--LHAA 92
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L D GL +FDT + + +PR LA +++HY D+ K DW RP
Sbjct: 93 TQDLPCL-ADLGLRPRSLFDTELGGRLVGLPRVGLAAVVEHYLDLTLAKEHSAVDWSTRP 151
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH---GKQNL-VLSTFTNSRNICKLKYEKP 445
LP + YA D L+ V D M+ DL +Q L++FT +
Sbjct: 152 LPTDWLVYAALDVEVLVEVRDAMEADLERLGRDEWARQEFDALTSFTAKDH--------- 202
Query: 446 VFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
+E + +H + +Q LREL+ RD +AR++D + V+ + L+ +A +
Sbjct: 203 --GDEAWRRTSGTHRIRRPRQAATLRELWLVRDEMARERDVTPSKVMHDDALVALATA 258
>gi|416892914|ref|ZP_11924238.1| Rnd protein [Aggregatibacter aphrophilus ATCC 33389]
gi|347814612|gb|EGY31261.1| Rnd protein [Aggregatibacter aphrophilus ATCC 33389]
Length = 394
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 16/261 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ITE E + ++ + QQ +A+D E+ R++ L+Q+ D+ ++D + +D
Sbjct: 25 LITEDESLAEVCALAGQQSAVALDTEFVRTRTFYPKLGLIQLYAGDEVALIDPTTI-QDF 83
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + KV H + D++ Q F M DT FL A L++
Sbjct: 84 SPFIALLADERVTKVLHASGEDLEVFQHYFQQLPQPMCDTQVMANFLGFANSPGFATLVQ 143
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y M+ L A Q+ V
Sbjct: 144 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYQQMQAQL--AQTEWQSAV-- 199
Query: 430 TFTNSRNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
N C+ K + EE Y I + LN+ + L+ L KWR + A +D
Sbjct: 200 -----ENECEFLLNKRAHSARDPEEAYFAIPNAWK-LNSLELMRLKLLAKWRMQEAMRRD 253
Query: 486 ESTGYVLPNHMLLQMAQSIPR 506
+ +V+ L +A+ P+
Sbjct: 254 LALNFVVHAENLWTVAKHDPK 274
>gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045]
gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045]
Length = 428
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 122/277 (44%), Gaps = 19/277 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I++ + ++V+ +A+D E + Y L+Q+
Sbjct: 37 EPREGIP------PVISDEAGLAEVVAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRE 90
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL + D V H A D+ L ++ G+ +FDT A
Sbjct: 91 GAGSALIDPVAC-PDLSAFGAAIADAEWV--LHAATQDLPCL-REIGMRPTRLFDTELAG 146
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 147 RLAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 206
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK L F + + K + M H + +Q +REL+
Sbjct: 207 ELD--RQGKLEWALQEFDAIASAPPAEPRKDPWRRTSGM-----HKVRRRRQMAVVRELW 259
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ RDRIA+ +D S G VL + +++ A ++P ++ +
Sbjct: 260 QTRDRIAQRRDVSPGKVLGDTAIVEAALALPPNVHAL 296
>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
Length = 422
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 13/238 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+ ID E + Y L+Q+ +++D ++L ++ L E L + + H A
Sbjct: 54 VGIDAERASGYRYSNRAYLIQLRREGSGIWLIDPIEL-TTMQPLVEAL--EGTEWILHAA 110
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L D GL+ +FDT A + L PR L L++ K DW RP
Sbjct: 111 TQDLPCL-SDLGLHPAALFDTELAGRLLGYPRVGLGTLVETVLGFTMLKEHSAADWSTRP 169
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+ ++YA D L+ + + + +L A GK F R +E PV
Sbjct: 170 LPDAWLEYAALDVEVLVELREALAAEL--VAQGKDAWARQEFDWLRG-----FEAPV-RT 221
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
+ + H + + A+REL+ RDRIA+ +D + ++P+ ++ AQ +P+D
Sbjct: 222 DAWRRTSGMHRVRGRRGLAAVRELWTERDRIAQQRDVTPSRIIPDAAIVAAAQDLPQD 279
>gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 421
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 19/272 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ LP + ++ + + +V+ L +A+D E + Y L+Q+
Sbjct: 28 EPREGLP------EVTSDADALAGVVAALSAGTGPVAVDAERASGYRYGQRAYLVQLRRE 81
Query: 296 DK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL LN+ + D +V H A D+ L + L +FDT A
Sbjct: 82 GAGSALIDPIAC-PDLSALNDAVGDAEVV--LHAAHQDLPCL-SEINLRPRSLFDTELAG 137
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ L R L ++++ + K DW RPLPE ++YA D L+ + D +++
Sbjct: 138 RLLGYQRVGLGFMVERLLHLRLAKEHSAVDWSQRPLPEDWLRYAALDVEILIDLRDSLEV 197
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F + ++P + + H + N + A+REL+
Sbjct: 198 ELEET--GKLEWAREEFA---AVLSAPPKEP--RTDPWRRTSGIHRVRNQRALAAVRELW 250
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
RDRIA+++D S G VLP+ +++ A ++PR
Sbjct: 251 YERDRIAQERDISPGRVLPDAAIVEAATAMPR 282
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 567 HDSNNQQKYA-LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 613
H NQ+ A +REL+ RDRIA+++D S G VLP+ +++ A ++PR
Sbjct: 235 HRVRNQRALAAVRELWYERDRIAQERDISPGRVLPDAAIVEAATAMPR 282
>gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756]
gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756]
Length = 389
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 28/270 (10%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT ++ +EL + +A+D E+ +Y CL+Q+++ + ++D L DLE
Sbjct: 4 ITTTAELAAFCNELAGEPFVAVDTEFMRETTYWPKLCLIQVASPTHEAVIDPLADDIDLE 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L V+ D+ I+KVFH A D++ + + +FDT A Q +AY L++
Sbjct: 64 PLLAVMRDERILKVFHAARQDVE-IFNNLKAMPKPLFDTQVAGMAAGFGEQ-IAYDALVR 121
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ DK+ + DW RPL E + YA D +L ++ ++ L + G+ V
Sbjct: 122 QMLRIELDKSSRFTDWARRPLTEAQLTYALADVTHLAALFPILRERLETS--GRLAWVEE 179
Query: 430 TFTNSRNICKLKYE--------KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
T + + +P + Y+ +F++ A WR+R A
Sbjct: 180 EMTAISDPAAYDVDPEKAWRRLRPRKTQAKYLAVFKAVA--------------AWRERTA 225
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++D+ G +L + + ++A P ++ +
Sbjct: 226 QNRDQPRGRILKDEAIDELATQAPTSLEAL 255
>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
Length = 383
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 137/327 (41%), Gaps = 39/327 (11%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT E + + L I +D E+ +Y CL+Q ++ D I+D + DLE
Sbjct: 4 ITTNEALADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGIIDPMAEGLDLE 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
++L D I+KVFH D++ + G MFDT A Q +AY L++
Sbjct: 64 PFLDLLRDPKIIKVFHACRQDVEIFVR-LGAMPRPMFDTQVAAMAAGFGEQ-VAYDSLVR 121
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
V+ DK + DW RPL + + YA D +L +Y ++ L G+ + V+S
Sbjct: 122 QMLRVELDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRLK--KEGRLDWVMS 179
Query: 430 TF----------TNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
TN N K KP Y+ F++ A+ WR+R
Sbjct: 180 EMESLIDPALYDTNPEN--AWKRLKPKKFSAKYLAAFKAVAV--------------WRER 223
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
A+++D+ G +L + + ++AQ P D + F VP+ L + L L+
Sbjct: 224 AAQERDQPRGRILKDEGIDEVAQQTPTDPEA-FNRLRSVPKGFGGSRLGLE---LAEELK 279
Query: 540 SLTKPVEKLQPSLDGMKKKQQQQVSPP 566
+ E P M++ +Q +PP
Sbjct: 280 RVLADPESHAPE---MERPAHRQPAPP 303
>gi|387771659|ref|ZP_10127817.1| ribonuclease D [Haemophilus parahaemolyticus HK385]
gi|386908519|gb|EIJ73212.1| ribonuclease D [Haemophilus parahaemolyticus HK385]
Length = 372
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 136/306 (44%), Gaps = 22/306 (7%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ + +Q+ ++ +Q +A+D E+ R++ L+Q+ + ++D ++ D
Sbjct: 8 LWVENEQQLAEVCQSARQVPVVALDTEFIRERTFYPKLGLIQLFDGKQVSLIDPTTIK-D 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
+L D+++ KV H D++ + F + DT FL + A L+
Sbjct: 67 FSPFVALLADQDVAKVLHACSEDLEVFECAFNQLPTPLVDTQVMATFLNLGTSVGFAKLV 126
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV- 427
HY DV+ DK DW RPL E +QYA D YLL +Y M+ +L A QN V
Sbjct: 127 LHYLDVELDKGASRTDWLVRPLSETQLQYAAADVWYLLPIYQKMQAEL--AQTNWQNAVN 184
Query: 428 --LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S F R C+ +K Y+ I + L QQ L+ L KWR A+ ++
Sbjct: 185 EECSAFLTKRE-CEEDLDK------AYIKISNAWR-LEPQQLAVLKLLAKWRAEEAQSRN 236
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
+ +V+ L ++A+ +P++ + + P V+ H IL+ Q L P
Sbjct: 237 LALNFVVKESNLYEIARILPKNPSQLLDFMH--PNEVRRH----GKKILRLVEQGLNTPT 290
Query: 546 EKLQPS 551
E L P+
Sbjct: 291 E-LHPA 295
>gi|399007815|ref|ZP_10710314.1| ribonuclease D [Pseudomonas sp. GM17]
gi|398119266|gb|EJM08970.1| ribonuclease D [Pseudomonas sp. GM17]
Length = 377
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E ++ +A+D E+ ++ L+Q+ + Y++D L + +D +
Sbjct: 8 IRDNDSLGQFCTEWQKLPFVALDTEFMRVDTFYPIAGLLQVGDGQRAYLIDPLTI-DDWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENSAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E + YA D +L V+ ++ LS K N VL
Sbjct: 126 EVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVFTRLRPKLS---EDKYNWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR+R AR +D
Sbjct: 183 D--GAELVANLRREVDPYE------VYREAKLAWKLSRAQLAVLRELCAWREREARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A+S P ++ + + P+TV++
Sbjct: 235 PRNRIVREHSLWPLAKSQPDNLGALAKIEDMHPRTVRQ 272
>gi|425898087|ref|ZP_18874678.1| ribonuclease D [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
gi|397891324|gb|EJL07802.1| ribonuclease D [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
Length = 377
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E ++ +A+D E+ ++ L+Q+ + Y++D L + +D +
Sbjct: 8 IRDNDSLGQFCTEWQKLPFVALDTEFMRVDTFYPIAGLLQVGDGQRAYLIDPLTI-DDWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENSAVVKVVHACSEDLEVLLRLTGSLPTPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E + YA D +L V+ ++ LS K N VL
Sbjct: 126 EVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVFTRLRPKLS---EDKYNWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR+R AR +D
Sbjct: 183 D--GAELVANLRREVDPYE------VYREAKLAWKLSRAQLAVLRELCAWREREARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A+S P ++ + + P+TV++
Sbjct: 235 PRNRIVREHSLWPLAKSQPDNLGALAKIEDMHPRTVRQ 272
>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
Length = 421
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 13/265 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+++T ++ + + L+++ I ID E+ R+Y CL+Q+++ D+ +VD L D
Sbjct: 34 VLVTTTAELGAVSARLRREPFITIDTEFVRERTYWPELCLVQLASADEVVVVDALAPGMD 93
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L E+L D+ ++KVFH A D++ F +FDT A Q + Y L
Sbjct: 94 LAPLGELLADEGVIKVFHAARQDLEIFLHLFDRLPQPLFDTQVAAMVAGYGDQ-VGYDSL 152
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ DK+ + DW RPL I+YA D YL VY + L G+++ +
Sbjct: 153 VASVVGAQIDKSHRFSDWAARPLSAAQIEYAAADVTYLREVYQRLVAQLD--REGRKDWM 210
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKWRDRIARDKDE 486
+ + + + E R NN++ LR + WR+ A+ +
Sbjct: 211 TAEMDVLNSPATFRPDPQTLWE-------RMRPRTNNRRMLGMLRAITAWREHEAQRVNV 263
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGI 511
++ + L+++A + P D+ +
Sbjct: 264 PRQRLMKDESLMEIAATSPGDVDAL 288
>gi|424799940|ref|ZP_18225482.1| Ribonuclease D [Cronobacter sakazakii 696]
gi|423235661|emb|CCK07352.1| Ribonuclease D [Cronobacter sakazakii 696]
Length = 369
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLAI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q FG+ DT F+ P A L++
Sbjct: 60 APFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFAMLVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 120 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEKVREAGW-------- 171
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 172 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 229
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 230 AVNFVVREENLWKVARHMPGSL 251
>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
Length = 442
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 13/245 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+AID E + Y L+Q+ ++VD + L L E L + + H A
Sbjct: 66 VAIDAERASGYRYSSRAYLIQLRREGSGTFLVDPIPF-VILPQLQEAL--EGTEWILHAA 122
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + L PR LA L++ K DW RP
Sbjct: 123 TQDLPCL-AEVGLLPSRLFDTELAGRLLGYPRVGLATLVETLLGSRLAKEHSAVDWSTRP 181
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L + D + +L A GK F R+ + +
Sbjct: 182 LPEPWLEYAALDVEVLAELRDLLADELETA--GKAEWARQEFDALRSFVQAE------RV 233
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + H + + A+R L++ RD IA ++D + G +LP+ ++ AQ++P D
Sbjct: 234 DAWRRTSGLHRVRGRRALAAVRALWETRDEIAENRDVTPGRILPDSAIVAAAQAMPTDRA 293
Query: 510 GIFAC 514
+ A
Sbjct: 294 TLLAT 298
>gi|416103390|ref|ZP_11589383.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348008125|gb|EGY48404.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
Length = 385
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 16/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D L + +D
Sbjct: 16 VVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDRVALIDPLPI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
++L D N+VK+ H D+ Q F M DT FL + + L++
Sbjct: 75 SPFIKLLADTNLVKILHACSEDLDVFQHYFQQLPRPMCDTQVMAHFLGFAGSTGFSTLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y+ M+ L+ Q++V
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYEQMQQQLTQTEW--QSVV-- 190
Query: 430 TFTNSRNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
N C+ K + Y I + LN + L+ L KWR A +D
Sbjct: 191 -----ENECEFLLNKRAQTTKDPDSAYFAIPNAWK-LNRLELMRLKLLAKWRMEEAMKRD 244
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ +V+ L Q+A+S P+ I +
Sbjct: 245 LALNFVVRAENLWQVAKSNPKHISTL 270
>gi|345430292|ref|YP_004823412.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
Length = 383
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 7/264 (2%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I E++ Q+ +QQ +A+D E+ +Y L+Q+ ++ ++D L + D
Sbjct: 13 LIQNNEELAQVCQLARQQSAVALDTEFMRVSTYYPKLGLIQLYDGERVSLIDPLSI-TDF 71
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D+ + K+ H + D+ ++F M DT +FL + LA L+
Sbjct: 72 SPFVELLRDQLVTKILHACNEDLLVFLQEFDALPQPMMDTQIMARFLGFANSAGLAKLVL 131
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK +W RPL +QYA D YLL VY M+++L A + Q ++
Sbjct: 132 HYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIEL-AQSPWLQAVIDD 190
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
KL P + Y++I LN + L+ L KWR A ++ +
Sbjct: 191 CQLAISKTSKLDDRDP---NKAYLDIPNVWK-LNPLELARLQLLAKWRQETAIARNLALS 246
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFA 513
YV+ + L ++A++ PR+ + A
Sbjct: 247 YVVKSDNLWKVAKNNPRNTSEMLA 270
>gi|255327433|ref|ZP_05368506.1| ribonuclease D [Rothia mucilaginosa ATCC 25296]
gi|255295501|gb|EET74845.1| ribonuclease D [Rothia mucilaginosa ATCC 25296]
Length = 421
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 9/244 (3%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E Y L+Q+ D+ Y++D + DL ++N+ L D V H A
Sbjct: 59 VAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAFK-DLRIINDALADAEWV--IHAAI 115
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
D L G+ +FDT + + R +L ++ K DW RPL
Sbjct: 116 QDFPSLDM-LGMRPNRLFDTELGARLAGLERVNLGAAVEELLGYKLAKKHSKEDWSRRPL 174
Query: 391 PEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE 450
PE + YA D L+ + D M+ DL GK L F +CK + P E
Sbjct: 175 PESWLNYALLDVDVLIDLRDAME-DL-LRQQGKLQYALEEF---EYLCKTPVKDPADQPE 229
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ L + +Q ALR L+ RD +AR KD +LP+ +++ A+++PR++
Sbjct: 230 RWRKTKGRTLLRSVKQLTALRNLWLERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPA 289
Query: 511 IFAC 514
I +
Sbjct: 290 IMSI 293
>gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121]
gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121]
Length = 387
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 128/262 (48%), Gaps = 11/262 (4%)
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
D P++ + + + + + IA+D E+ ++ T L+QIS + +VD L
Sbjct: 14 DVPIVWVEKDDDLVKWCDHFAALPVIAVDTEFIRRTTFYPITGLIQISEGEHAVLVDPLA 73
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
+ + + L +++T++++VKVFH D++ + G+ +DT A ++ + SL+
Sbjct: 74 I-SNWQPLIDLMTNQSVVKVFHACSEDLEVFDRLLGVVPSPFYDTQVAEAYVS-GQWSLS 131
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L+ Y +++ K DW RPL E +YA D +L+ VY ++D A K
Sbjct: 132 YVKLILAYKNIEIAKDETRSDWLKRPLTEAQKRYAALDVIHLIDVYHT-QMD----ALDK 186
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
+N++ + I +Y E+ + N+ +S LN + LR L+ WRD+ AR
Sbjct: 187 KNMLAWALEDGAAIIH-QYRLNSDPEQNWFNV-KSAWRLNPKSLTLLRLLFVWRDKTARA 244
Query: 484 KDESTGYVLPNHMLLQMAQSIP 505
+D G V+ + L +A+ P
Sbjct: 245 EDVPKGQVIKDRTLWAIAKFFP 266
>gi|422324994|ref|ZP_16406031.1| hypothetical protein HMPREF0737_01141 [Rothia mucilaginosa M508]
gi|353343703|gb|EHB88018.1| hypothetical protein HMPREF0737_01141 [Rothia mucilaginosa M508]
Length = 421
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 9/244 (3%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E Y L+Q+ D+ Y++D + DL ++N+ L D V H A
Sbjct: 59 VAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAFK-DLRIINDALADAEWV--IHAAI 115
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
D L G+ +FDT + + R +L ++ K DW RPL
Sbjct: 116 QDFPSLDM-LGMRPNRLFDTELGARLAGLERVNLGATVEDLLGYKLAKKHSKEDWSRRPL 174
Query: 391 PEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE 450
PE + YA D L+ + D ++ L GK L F +CK + P E
Sbjct: 175 PESWLNYALLDVDVLIDLRDALEELLRQ--QGKLQYALEEF---EYLCKTPVKDPADQPE 229
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ L + +Q ALR L+ RD +AR KD +LP+ +++ A+++PR++
Sbjct: 230 RWRKTKGRTMLRSVKQLTALRNLWLERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPA 289
Query: 511 IFAC 514
I A
Sbjct: 290 IMAI 293
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 517 PVPQT-VKEHVLDIHAII-LKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDS----- 569
P+P++ + +LD+ +I L+ L+ L + KLQ +L+ + + V P D
Sbjct: 173 PLPESWLNYALLDVDVLIDLRDALEELLRQQGKLQYALEEFEYLCKTPVKDPADQPERWR 232
Query: 570 ---------NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620
+ +Q ALR L+ RD +AR KD +LP+ +++ A+++PR++ I A
Sbjct: 233 KTKGRTMLRSVKQLTALRNLWLERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAIMA 292
Query: 621 C 621
Sbjct: 293 I 293
>gi|429118642|ref|ZP_19179397.1| Ribonuclease D [Cronobacter sakazakii 680]
gi|426326896|emb|CCK10134.1| Ribonuclease D [Cronobacter sakazakii 680]
Length = 373
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q FG+ DT F+ P A L++
Sbjct: 64 APFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 124 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-------- 175
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 176 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 233
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 234 AVNFVVREENLWKVARHMPSSL 255
>gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703]
gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703]
Length = 403
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 11/270 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + ++++ S+ ++ ++A+D E+ R+Y L+Q+ ++ ++D L +
Sbjct: 34 LITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSI-TVW 92
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ ++L D + K H D++ FGL DT FL P A L+
Sbjct: 93 QPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAALVA 152
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E QYA D +YLL + + + ++A + +
Sbjct: 153 DYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWE-----A 207
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
R +C+ K + + E+ Y I + L + L++L WR R AR++D +
Sbjct: 208 ALDECRQLCQRK-QDVLAPEQAYREIGNAWQ-LKGRHLACLQKLADWRLRKARERDSAVN 265
Query: 490 YVLPNHMLLQMAQSIPRDIQ--GIFACCNP 517
+++ L Q+A+ +P + G P
Sbjct: 266 FIVREEHLGQVARYLPGSLGELGALGLSGP 295
>gi|395771094|ref|ZP_10451609.1| ribonuclease D [Streptomyces acidiscabies 84-104]
Length = 385
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 13/268 (4%)
Query: 251 MITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
M+ + E + ++++ +A+D E + Y L+Q+ ++D +
Sbjct: 1 MVADEEALAEVIAAFAGGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-P 59
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L +VL D V H A D+ L ++ G+ +FDT A + PR L ++
Sbjct: 60 DLSALGDVLADTEWV--LHAATQDLPCL-REIGMIPTRLFDTELAGRLAGFPRVGLGAMV 116
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ +K DW RPLPEP ++YA D L+ + D ++ +L GK
Sbjct: 117 ESVLGYVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELD--RQGKLEWAR 174
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + K + M H + +Q +REL++ RDRIA+ +D S
Sbjct: 175 EEFAAIAAAPPAEPRKDPWRRTSGM-----HKVRRRRQLAVVRELWQTRDRIAQRRDVSP 229
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCN 516
G VL + +++ A ++P ++ + A
Sbjct: 230 GKVLADAAIVEAALAVPVNVHALSALAG 257
>gi|365858694|ref|ZP_09398611.1| ribonuclease D [Acetobacteraceae bacterium AT-5844]
gi|363713764|gb|EHL97341.1| ribonuclease D [Acetobacteraceae bacterium AT-5844]
Length = 394
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 1/168 (0%)
Query: 246 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK 305
D ++IT + +T L + L+++ + +D E+ R+Y C++Q+ + ++D L
Sbjct: 9 DAAPVLITTTDALTALCARLREEPFVTVDTEFMRERTYWPELCVVQLGGANDVAVIDALA 68
Query: 306 LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SL 364
DL L E+L D + KVFH A D++ FG +FDT A Q S
Sbjct: 69 EGLDLAPLGELLADPKVTKVFHAARQDVEICILRFGAPPRPLFDTQIAAMVAGFGDQASY 128
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412
L++ + DK + DW RPL I YA D +L VY +
Sbjct: 129 DSLVRGLANASIDKAHRFSDWAARPLSPAQIAYAAADVTHLRRVYTAL 176
>gi|188533676|ref|YP_001907473.1| ribonuclease D [Erwinia tasmaniensis Et1/99]
gi|188028718|emb|CAO96580.1| Ribonuclease D [Erwinia tasmaniensis Et1/99]
Length = 373
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 11/260 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT +++ +Q +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTNAALSEACQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLPI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+E+L D+ ++K H D++ +FG+ M DT F P A +++
Sbjct: 64 TPFSELLQDQKVIKYLHAGSEDLEVFCHEFGVLPQPMIDTQILAAFSGRPLSCGFATVVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + DK+ DW RPL E QYA D YLL + KL A + G+ L
Sbjct: 124 SFTGIALDKSESRTDWLARPLSEKQCQYAAADVFYLLPIAG--KLVAEAESAGQMAAALD 181
Query: 430 TFTNSRNICKLKYEKPVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
R +C+ + V + +E Y I + L +Q ALR + WR AR+KD +
Sbjct: 182 ---ECRLLCQRR--TTVLDPQEAYREIANAWQ-LRPRQLAALRLMAAWRLETAREKDMAV 235
Query: 489 GYVLPNHMLLQMAQSIPRDI 508
+V+ L ++A+ +P +
Sbjct: 236 NFVVREENLWKVARFMPGSL 255
>gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
Length = 451
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 11/258 (4%)
Query: 252 ITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRED 309
+T P ++ +V+ +A+D E + Y L+Q+ ++D L L E
Sbjct: 64 VTTPTELAGVVARFSAGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLPLPE- 122
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L L+E + + V H A D+ L + GL +FDT A + R LA L +
Sbjct: 123 LTTLDEAIGEAEWV--LHAASQDLPCL-AELGLRPRRLFDTELAARLAGFERVGLAALTE 179
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H +K DW RPLPE + YA D L+ + D ++ +L+ +Q
Sbjct: 180 HLLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALEAELT-----RQGKAEW 234
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + P E + H + + + +R L+ RD+IA +D + G
Sbjct: 235 AAEEFAALVRNGARPPRVRAEPWRRTSGIHRVRGARAQARVRSLWYARDQIAARRDAAPG 294
Query: 490 YVLPNHMLLQMAQSIPRD 507
VLP+ ++ A+ PRD
Sbjct: 295 RVLPDSAIVAAAELDPRD 312
>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
Length = 384
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 17/256 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+++PE++ +L +E+A+D E+ +Y L+QI + Y++D L +DL
Sbjct: 18 VSDPERLQELCQSWLALKELAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAF-DDLS 76
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L E+ ++VK H D++ L +G +FDT A L S+ Y +++
Sbjct: 77 ALTELFASTSVVKALHSCSEDLEALYHQYGFEFNQVFDTQIAAS-LDGIGLSVGYGNIVE 135
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK DW RPL + YA D YL+ VY +L S G V+
Sbjct: 136 HFLSVVLDKEHTKTDWLQRPLSQEQRVYAAQDVQYLMPVY--YRLRDSLLEKGLFECVIE 193
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNI---FRSHALLNNQQKYALRELYKWRDRIARDKDE 486
NS ++ + E Y+ + FR LN Q L++L +WR+ +ARD +
Sbjct: 194 D-VNSIFAAIIQADDYA---EAYLKVKGAFR----LNQFQLNRLQKLAQWRETLARDNNI 245
Query: 487 STGYVLPNHMLLQMAQ 502
+V +H L++++Q
Sbjct: 246 PKTFVFRDHHLIEVSQ 261
>gi|416051386|ref|ZP_11577434.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992819|gb|EGY34196.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 385
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 117/261 (44%), Gaps = 16/261 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ ++ ++ +QQ +A+D E+ R+ L+Q+ D+ ++D + +D
Sbjct: 16 VVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQLYGGDEVALIDPTHI-QDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D N+VK+ H D+ Q F M DT FL + A L++
Sbjct: 75 SPFIELLADSNVVKILHACSEDLDVFQHYFQQLPRPMCDTQVVAHFLGFAGSTGFATLVQ 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK DW RPL + +QYA D YLL +Y+ M+ L A Q+ V
Sbjct: 135 HYFQIEIDKGASRTDWLARPLSDAQLQYAAADVWYLLPLYEQMQAQL--AQTEWQSAV-- 190
Query: 430 TFTNSRNICKLKYEKPVFN----EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
N C+ K + Y I + LN + L+ + KWR A +D
Sbjct: 191 -----ENECEFLLNKRAQTTKEPDSAYFAIPNAWK-LNRLELMRLKLMAKWRMEEAMRRD 244
Query: 486 ESTGYVLPNHMLLQMAQSIPR 506
+ +V+ L Q+A+S P+
Sbjct: 245 LALNFVVRAENLWQVAKSNPK 265
>gi|409422781|ref|ZP_11259865.1| ribonuclease D [Pseudomonas sp. HYS]
Length = 377
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 18/259 (6%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+Q+ + Y++D L++ D + L +L D ++KV H
Sbjct: 27 VALDTEFMRVDTFYPKAGLIQVGDGARAYLIDPLRI-GDWQPLAGLLEDPQVIKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ +D K DW R
Sbjct: 86 EDLEVLSRLTGSLPAPLFDTQLAAGYLNL-GFSMGYSRLVQEVLGIDLPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L +Y+ ++ LSA H VL + + +L+ E +
Sbjct: 145 PLSETQVSYAAEDAVHLAELYERLRPQLSADKHA---WVLE--DGAELVAQLRRETDPY- 198
Query: 449 EEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
++R L L+ Q LREL WR+R AR +D ++ + L MA++ P
Sbjct: 199 -----ELYREAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRIVRENALWPMARTQP 253
Query: 506 RDIQGIFACCNPVPQTVKE 524
+ + + P+T+++
Sbjct: 254 DSLSALAKIEDMHPRTIRQ 272
>gi|342179234|sp|C9XUE4.2|RND_CROTZ RecName: Full=Ribonuclease D; Short=RNase D
Length = 369
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + E
Sbjct: 1 MITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTITE-W 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+NI K H D++ Q FG+ DT F+ P A L++
Sbjct: 60 APFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 120 HHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-------- 171
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 172 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 229
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 230 AVNFVVREENLWKVARHMPGSL 251
>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
Length = 377
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 121/256 (47%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+Q+S D Y++D L++ D +L N+VKV H
Sbjct: 27 VALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPLRI-SDWRPFAALLEAPNVVKVLHSCS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ + G +FDT A +L + S+ Y L++ D++ K DW R
Sbjct: 86 EDLEVFLRLSGSLPAPLFDTQLAAGYLNL-GFSMGYSRLVQALLDIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E ++YA D +L+ VY + ++ A K VL + + L E V
Sbjct: 145 PLSELQVRYAAEDVLHLVEVYRAL---MARLAPQKVEWVLED--GAELVANLSRE--VAP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E+ + + L + QQ+ LR L WR+R AR +++ VL H L +A++ P ++
Sbjct: 198 EDAWREAKLAWKL-SRQQQAVLRALCAWREREARARNQPRNRVLREHSLWPLARTQPDNL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ + P+TV++
Sbjct: 257 VALARIEDMHPKTVRQ 272
>gi|291448576|ref|ZP_06587966.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
gi|291351523|gb|EFE78427.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
Length = 373
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P ++T + + ++++ +A+D E + Y L+Q+
Sbjct: 33 EPREGIP------PVVTSDDALARVIASFAAGTGPVAVDAERASGYRYGQRAYLVQLRRE 86
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
+VD + DL L L + H A D+ L +D G+ +FDT A
Sbjct: 87 GAGSALVDPVGC-PDLSGLGTALDGTEWI--LHAATQDLPCL-RDIGMTPTSLFDTELAG 142
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 143 RLAGFPRVGLGAMVENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDALEE 202
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F K + M H + +Q +REL+
Sbjct: 203 ELD--RQGKLEWAREEFDAIAAAPPAPPRKDPWRRTSGM-----HKVRRRRQMAVVRELW 255
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
RD++A+ +D S G VL + +++ A ++P D+Q + A
Sbjct: 256 TTRDQVAQRRDVSPGKVLGDAAIVEAALALPVDVQALTA 294
>gi|94500848|ref|ZP_01307374.1| ribonuclease D [Bermanella marisrubri]
gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65]
Length = 382
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 26/275 (9%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKL--------REDLEV-LNEVLTDKN 321
IA+D E+ ++ L+QI+ + Y+VD +++ RE++ L EVL+++N
Sbjct: 23 IALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINRAHRGEPREEVWGPLIEVLSNQN 82
Query: 322 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKT 379
+VKV H D + G+ + DT A + + Y L+K D+D +K
Sbjct: 83 VVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMASID-GIMGYQKLVKQLLDIDLEKG 141
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
DW RPL + I YA D +LL + +L+ G+ +L C+
Sbjct: 142 ATRSDWLQRPLTDEQIHYAADDVEHLLEI--TKRLETQLVTQGRWTWLLED-------CE 192
Query: 440 LKYEKPVFNEE-GY-MNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHML 497
E + +E GY + + +L +Q + L +L WR+R R ++ G++L + +L
Sbjct: 193 RMVEDWLIGQEQGYGIERIKKAWMLKPKQLFTLEKLLAWRERRCRTVNKPRGHILNDSLL 252
Query: 498 LQMAQSIP---RDIQGIFACCNPVPQTVKEHVLDI 529
+ +A +P + + I P + E ++DI
Sbjct: 253 VDLAMRLPTSTKQLSSIKGIRQPTVRKDGEQIVDI 287
>gi|444911412|ref|ZP_21231587.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
gi|444718170|gb|ELW58986.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
Length = 388
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 28/345 (8%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L+Q +E+++D+E S++ C +Q++T ++ DTL+ +L V+ D K
Sbjct: 24 LEQARELSVDVETDAMHSFRARLCFLQLATDTDVFLFDTLQPGVHPSLLARVMEDPERTK 83
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
FH A D+ +L + G+ V G+FDTH+A L P+ LA L + V+ K Q D
Sbjct: 84 FFHAASGDLPFL-AEAGVRVRGLFDTHRAATLLGWPKVGLADLARERLGVELPKEHQQSD 142
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
+ RPLP Y D YL+ + ++ + K +++ + + +C +
Sbjct: 143 FALRPLPPGMRDYIANDVRYLVELGRQVREECR-----KADVLEEVLLDCQRMCDEAAAR 197
Query: 445 PVFNEE-----GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQ 499
P E + + LL N A L+K R A ++ G L N +
Sbjct: 198 PDVGAEFKPKLPKGGLTPAQLLLANTIAQA---LHKKRLEWAEAENVPMGRTLSNMAITD 254
Query: 500 MAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQ 559
+A P + + + V+ H ++ +++ E L+ S G K
Sbjct: 255 IAIKPPGNPKELARAAGVRGAFVRAHGEEVISLVR-----------ELLEKSRQGELKPD 303
Query: 560 QQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHML 604
++ P D+N +++ L WR A + + VLPN +
Sbjct: 304 VEERG-PRDANRRKRE--DALKAWRSEQATARKVTPSVVLPNALF 345
>gi|399073593|ref|ZP_10750582.1| ribonuclease D [Caulobacter sp. AP07]
gi|398041375|gb|EJL34440.1| ribonuclease D [Caulobacter sp. AP07]
Length = 389
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 26/258 (10%)
Query: 263 SELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNI 322
+ELK IA+D E+ +Y CL+Q+++ D + +D L DL L ++L D +
Sbjct: 15 NELKGAPFIAVDTEFMRETTYWPKLCLIQVASPDTEACIDPLAEGLDLAPLLDILRDPAV 74
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTF 380
+KVFH A D++ + + +FDT A Q +AY L++ ++ DK+
Sbjct: 75 LKVFHAARQDVE-IFNNLNAMPTPLFDTQVAGMAAGFGEQ-IAYDALVRQMLKIELDKSS 132
Query: 381 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKL 440
+ DW RPL E + YA D +L ++ ++ L A + +
Sbjct: 133 RFTDWARRPLSEAQLTYAVADVTHLATLFPILRERLEKAGR---------------LAWV 177
Query: 441 KYEKPVFNEEGYMNI-----FRSHALLNNQQKY--ALRELYKWRDRIARDKDESTGYVLP 493
+ E N+ ++ +R KY + + WR+R A+ +D+ G +L
Sbjct: 178 EEEMKALNDPAAYDVDPEKAWRRLRPRKTAPKYLAVFKAVAAWRERTAQTRDQPRGRILK 237
Query: 494 NHMLLQMAQSIPRDIQGI 511
+ + ++A P ++G+
Sbjct: 238 DEAIDELATQAPTSLEGL 255
>gi|418463537|ref|ZP_13034542.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
gi|359732844|gb|EHK81852.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
Length = 395
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 11/239 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+QI +++D + LR+ L L EV+ D + V H A
Sbjct: 32 LAVDTERASGYRYWPRAYLVQIRREGAGTFLIDPIPLRDHLAPLAEVMND--VEWVLHAA 89
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + R +L L++ +K DW RP
Sbjct: 90 SQDLPCL-AELGLRPPSLFDTELAGRLAGHQRVALGTLVEELLGYRLEKGHSAADWSRRP 148
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP + YA D L+ + + KL+ AA GK + F R E P
Sbjct: 149 LPVDWLNYAALDVELLVPLRE--KLEAELAASGKLDWARQEFEAVRTA-----EPPRPRS 201
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E + H + + A+R L++ RD +AR +D + G +LP+ ++ + PR +
Sbjct: 202 EPWRRTSGIHKIRTARGLAAVRALWEARDELARKRDRAPGRILPDSAIINAVLADPRTV 260
>gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
Length = 385
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLMQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|451948147|ref|YP_007468742.1| ribonuclease D [Desulfocapsa sulfexigens DSM 10523]
gi|451907495|gb|AGF79089.1| ribonuclease D [Desulfocapsa sulfexigens DSM 10523]
Length = 361
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 10/254 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRED 309
MIT PE + L+ ++ +A+D E+ ++Y L+Q++ +++ +++D L +D
Sbjct: 1 MITTPEALEALIKRAQETNAVALDTEFVWEKTYYPKLGLIQLALSNEECFLIDPCAL-DD 59
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L E+L D+++VK+FH A D+ L+ G +FDT A F SL L+
Sbjct: 60 LSPLGELLADRSVVKIFHDAPQDLTILRTATGKDPKNIFDTRLAAGFAGFTSTLSLGALI 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ D+ +KT +W RPL YA D YL V + + L
Sbjct: 120 ELLLDIKLEKTETRTNWLKRPLNSKQTLYAMDDVRYLRAVRVLLLARVLPETLPWLEEEL 179
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
N + V +EE Y I + L Q L+EL WR+ AR ++
Sbjct: 180 QRLDNPASYLG------VTDEERYTKI-KGAGGLEAQSLAILQELAAWREAEARHRNRPR 232
Query: 489 GYVLPNHMLLQMAQ 502
G+++ + +LL +A+
Sbjct: 233 GHIIKDTVLLSIAR 246
>gi|440701120|ref|ZP_20883331.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
gi|440276236|gb|ELP64529.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
Length = 429
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 13/268 (4%)
Query: 251 MITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
++T+ + + ++++ +A+D E + Y L+Q+ ++D +
Sbjct: 45 VVTDEQSLAEVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-P 103
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L E L+ + V H A D+ L ++ G+ +FDT A + PR L ++
Sbjct: 104 DLSGLGEALS--GVEWVLHAATQDLPCL-REIGMIPTQLFDTELAGRLAGFPRVGLGAMV 160
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ +K DW RPLPEP ++YA D L+ + D ++ +L GK
Sbjct: 161 EGVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELD--RQGKLEWAR 218
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + + K + M H + +Q +REL++ RDRIA+ +D S
Sbjct: 219 QEFDAIASAPPPEPRKDPWRRTSGM-----HKVRRRRQLAVVRELWETRDRIAQRRDVSP 273
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCN 516
G VL + +++ A ++P ++ + A
Sbjct: 274 GKVLSDAAIVEAALAVPVNVNALAALTG 301
>gi|37526051|ref|NP_929395.1| ribonuclease D [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36785481|emb|CAE14428.1| Ribonuclease D (RNase D) [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 375
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT Q+ Q+ K+ ++A+D E+ R+Y L+Q+ ++ ++D L + +
Sbjct: 5 LITTDAQLQQVCEGAKKYSKVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNI-TNW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ E++T I+K+ H D++ F M DT F+ P A L+
Sbjct: 64 QPFRELITHPQILKLLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFIGHPLSCGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V+ DK+ DW RPL E +YA D +YLL + D + + A +
Sbjct: 124 EYIHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILMTATAQAGY-------- 175
Query: 430 TFTNSRNICKL--KYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ C+L + K + E + L QQ L++L WR AR++D +
Sbjct: 176 -MEAATGECRLISRRRKEILEPESAYKQIGNICQLRPQQLACLKKLAAWRLSQARERDLA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ L Q+A+ +P +
Sbjct: 235 VNFVIREENLWQVARYMPTSL 255
>gi|372280705|ref|ZP_09516741.1| ribonuclease D [Oceanicola sp. S124]
Length = 386
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 27/275 (9%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST----RDKDYIVDTL 304
+ IT +++ +E K + +D E+ R+Y CL+Q++ D +VD L
Sbjct: 1 MQTITRTDELAAFCAEAKTHPYVTVDTEFLRERTYYSQLCLVQLAMPGEGDDGAVLVDPL 60
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
LE L E+ D+N+VKVFH A D++ D GL +FDT A Q +
Sbjct: 61 SEELSLEPLYELFRDENVVKVFHAARQDLEIFFVDAGLIPAPLFDTQVAAMVCGFGEQ-V 119
Query: 365 AY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC----MKLDLSA 418
Y L++ DK+ + DW RPL E +YA D +L +Y+ +K D A
Sbjct: 120 GYETLVRKIARESLDKSSRFTDWSRRPLTEAQKKYALADVTHLRKIYEYLSGQLKKDGRA 179
Query: 419 AAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY--ALRELYKW 476
A ++ +L++ E + E R+ N ++ LREL K+
Sbjct: 180 AWVAEEMSILTS-----------PETYIVRPEDAWQRVRTR---TNSGRFLGVLRELAKF 225
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
R+ A+ ++ V + L+++A + P+++Q +
Sbjct: 226 RESYAQTRNVPRNRVYKDDALVELASTKPQNVQDL 260
>gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
Length = 385
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 139/300 (46%), Gaps = 10/300 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT E + ++ ++Q+ +A+D E+ ++ + L+Q+ + ++D L + +++
Sbjct: 5 LITTFEHLEKVCEAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI-DNM 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM-PRQSLAYLLK 369
+ +L + +VKV H D++ F +FDT A L M P A L++
Sbjct: 64 QPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSLGYAKLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
C++ DK DW RPL E + YA D YLL Y +L + A GK + +
Sbjct: 124 LLCEISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQ--QLASNVQALGKVHWIYE 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + K + + P + Y++I S LN++Q L+ L WR AR KD +
Sbjct: 182 EV--ALLVEKKRAQMP--EDFAYLSIKNSWR-LNSEQLTVLQALAAWRLNTARKKDLALN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ 549
+V L + AQ + D G+ Q+V+ + I +I +AR + P EKL+
Sbjct: 237 FVFKEGHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEARARYAQTP-EKLR 295
>gi|302537554|ref|ZP_07289896.1| ribonuclease D [Streptomyces sp. C]
gi|302446449|gb|EFL18265.1| ribonuclease D [Streptomyces sp. C]
Length = 428
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 19/277 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P ++ + + + ++V+ +A+D E + Y L+Q+
Sbjct: 37 EPREGIP------PVVADADALARVVAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRRE 90
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L E L+ + H A D+ L ++ G+ +FDT A
Sbjct: 91 GAGSALIDPVGC-PDLSALGEALSGTEWI--LHAATQDLPCL-REIGMVPTSLFDTELAG 146
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L +++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 147 RLAGFPRVGLGAMVEGVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 206
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F + K + M H + +Q +REL+
Sbjct: 207 ELD--RQGKLEWARQEFDAIASAPPAPPRKDPWRRTSGM-----HKVRRRRQMAVVRELW 259
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ RDRIA+ +D S G VL + +++ A ++P ++ +
Sbjct: 260 ESRDRIAQRRDVSPGKVLGDAAIVEAALALPVNVHAL 296
>gi|339488844|ref|YP_004703372.1| ribonuclease D [Pseudomonas putida S16]
gi|431803860|ref|YP_007230763.1| ribonuclease D [Pseudomonas putida HB3267]
gi|338839687|gb|AEJ14492.1| ribonuclease D [Pseudomonas putida S16]
gi|430794625|gb|AGA74820.1| ribonuclease D [Pseudomonas putida HB3267]
Length = 377
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+QI + +++D L L + + L E+L D +VKV H
Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL-LIGNWQPLAELLDDSGVVKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ +D K DW R
Sbjct: 86 EDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQDVLGIDLPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L ++ ++ LS K VL + + L+ E V
Sbjct: 145 PLSETQVSYAAEDAVHLAELFTVLRPRLS---DDKYAWVLED--GAELVAALRRE--VEP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E Y ++ + L QQ LREL WR+R AR++D +L H L MA+S P ++
Sbjct: 198 ESLYRDVKLAWKL-APQQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPSNL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ P+T+++
Sbjct: 257 SALAKIDEMHPRTIRQ 272
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ LREL WR+R AR++D +L H L MA+S P ++ + P+T+++
Sbjct: 213 QQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPSNLSALAKIDEMHPRTIRQ 272
>gi|429110648|ref|ZP_19172418.1| Ribonuclease D [Cronobacter malonaticus 507]
gi|426311805|emb|CCJ98531.1| Ribonuclease D [Cronobacter malonaticus 507]
Length = 369
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 115/259 (44%), Gaps = 15/259 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q FG+ DT F+ P A L++
Sbjct: 60 APFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 120 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-------- 171
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 172 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 229
Query: 487 STGYVLPNHMLLQMAQSIP 505
+ +V+ L ++A+ +P
Sbjct: 230 AVNFVVREENLWKVARHMP 248
>gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591]
gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591]
Length = 373
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 9/259 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT E ++ + ++ E+A+D E+ R+Y L+Q+ D ++D L +R D
Sbjct: 5 LITTDEGLSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLAIR-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L + I K H D++ FG D+ FL P A L+
Sbjct: 64 APFRALLQNPQITKFLHAGSEDLEVFLNAFGCLPSPFIDSQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E QYA D YLL V + + AA + +
Sbjct: 124 DYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVAETRAAGW-----LDA 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
R +C+ + ++ + E Y I + L + L++L WR R AR++D +
Sbjct: 179 ALDECRLLCQ-RRQEVLAPEMAYREIGNAWQ-LRGRHLACLQKLAAWRLRKARERDSAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDI 508
+++ L Q+A+ +P +
Sbjct: 237 FIVREENLWQVARCLPGSL 255
>gi|389685256|ref|ZP_10176580.1| ribonuclease D [Pseudomonas chlororaphis O6]
gi|388550909|gb|EIM14178.1| ribonuclease D [Pseudomonas chlororaphis O6]
Length = 377
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E ++ +A+D E+ ++ L+Q+ + Y++D L + +D +
Sbjct: 8 IRDNDSLGQFCTEWQKLPFVALDTEFMRVDTFYPIAGLLQVGDGQRAYLIDPLTI-DDWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENSAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E + YA D +L V+ ++ LS K N VL
Sbjct: 126 EVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVFTQLRPKLS---EDKYNWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR+R AR +D
Sbjct: 183 D--GAELVANLRREVDPYE------VYREAKLAWKLSRAQLAVLRELCAWREREARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A+S P + + + P+TV++
Sbjct: 235 PRNRIVREHSLWPLAKSQPDSLGALAKIEDMHPRTVRQ 272
>gi|409040136|gb|EKM49624.1| hypothetical protein PHACADRAFT_214164 [Phanerochaete carnosa
HHB-10118-sp]
Length = 431
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 395 IQYARTDTHYLLYVYDCMKLDL---------------------SAAAHGKQNLVLSTFTN 433
+ YAR+DTH+LL++YD ++ L S+A + LV +
Sbjct: 2 LNYARSDTHFLLFIYDHLRNALLDRAQSRAQSPSTASEPAPSTSSAVNPSHALVREVLSR 61
Query: 434 SRNICKLKYEKPVFNEEG---------YMNIFRSHALLNNQQKYALRELYK----WRDRI 480
S E+ V++ EG + AL+ +++ R +YK WRDR
Sbjct: 62 SEETALRVLEREVYDAEGGSGPAGWDTLARKWNKGALMAGERETVRRRIYKAVHAWRDRA 121
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
AR++DEST YVLPNH L +A+ P DI G+ + VP V+ ++ I +A
Sbjct: 122 AREEDESTRYVLPNHYLFVLAEQPPADIAGLLSLFQHVPPVVRRRAKELFEAIRQA 177
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 578 RELYK----WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 633
R +YK WRDR AR++DEST YVLPNH L +A+ P DI G+ + VP V+
Sbjct: 108 RRIYKAVHAWRDRAAREEDESTRYVLPNHYLFVLAEQPPADIAGLLSLFQHVPPVVRRRA 167
Query: 634 LDIHAIILKA 643
++ I +A
Sbjct: 168 KELFEAIRQA 177
>gi|449307951|ref|YP_007440307.1| ribonuclease D [Cronobacter sakazakii SP291]
gi|449097984|gb|AGE86018.1| ribonuclease D [Cronobacter sakazakii SP291]
Length = 373
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLAI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q FG+ DT F+ P A L++
Sbjct: 64 APFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 124 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-------- 175
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 176 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 233
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 234 AVNFVVREENLWKVARHMPGSL 255
>gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
Length = 398
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 127/267 (47%), Gaps = 9/267 (3%)
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
+S TP+ I P+Q+ Q + + + Q + +D E+H ++ L+QI + +++D
Sbjct: 1 MSTTPIEFINTPDQLRQAAATMAECQVLCVDTEFHRESTFYPEFALLQIYGNGQCWVIDP 60
Query: 304 LKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ- 362
+ ++ DL + +++ + I+KVFH A DI+ + + G + +FDT A L +Q
Sbjct: 61 ITIK-DLAPVWDIMLNPAILKVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALLGYGQQV 119
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
L++ K DW+ RPL + + YA D +L+ V+ +K L AA
Sbjct: 120 GFGNLVQRITKKLLPKGESFTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAA--- 176
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
K+ L + +C + +P N+ + L + L+E+ WR+R A+
Sbjct: 177 KRTQWLQ--EEQQTLCSPETYQP--NDADAFWRVKGFNRLKGRHLAVLQEMAAWRERSAQ 232
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+D ++ + LL++A+ DI+
Sbjct: 233 QRDIPRRRMIADEPLLELARRDLLDIE 259
>gi|357029287|ref|ZP_09091290.1| ribonuclease D [Mesorhizobium amorphae CCNWGS0123]
gi|355535902|gb|EHH05184.1| ribonuclease D [Mesorhizobium amorphae CCNWGS0123]
Length = 383
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 39/279 (13%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT ++ +V+ ++ + +D E+ ++ CL+Q++ ++D L
Sbjct: 1 MHVITTQSELENVVAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSPDI 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL+ ++ ++ +VKVFH A DI+ + L +FDT A C F S++
Sbjct: 61 DLKPFFRLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVCGF----GDSVS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA--AH 421
Y L++ DK+ + DWRHRPL + + YA D +L+ VY + +L AH
Sbjct: 117 YDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELVRENRAH 176
Query: 422 --GKQNLVLSTF-------TNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE 472
++ VL++ ++ K++ KP Q+ ++
Sbjct: 177 WLNEEMEVLTSRETYDPHPEDAWKRLKMRLRKP-------------------QELAIVQA 217
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ WR+R AR++D G VL + + ++AQ PRD G+
Sbjct: 218 VAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAGL 256
>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
Length = 385
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTSKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|444311740|ref|ZP_21147342.1| ribonuclease D [Ochrobactrum intermedium M86]
gi|443484862|gb|ELT47662.1| ribonuclease D [Ochrobactrum intermedium M86]
Length = 385
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 43/281 (15%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MHLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ +VKVFH A DI+ + L +FD+ A C F +++
Sbjct: 61 DLAPFFRLMADEKVVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL E + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELE--KEGR 174
Query: 424 QNLV---LSTFTNSRNI----------CKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL 470
V ++ T+ K + KP+ ++ +
Sbjct: 175 SEWVNEEMAVLTSRETYDLHPDDAWRRVKARVRKPI-------------------EQAIV 215
Query: 471 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ + WR+R AR+++ G ++ + + ++AQ PRD + +
Sbjct: 216 QAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|374702966|ref|ZP_09709836.1| ribonuclease D [Pseudomonas sp. S9]
Length = 382
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+Q+S ++ Y++D L L D +L + ++KV H
Sbjct: 27 VALDTEFMRVDTFYPIAGLIQVSEGERAYLIDPL-LISDWAPFAALLENPEVIKVVHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ + G V +FD+ A +L + S+ Y L+K D++ K DW R
Sbjct: 86 EDLEVFLRLTGSLPVPLFDSQIAAGYLNLGF-SMGYSRLVKAVLDIELPKGETRSDWLKR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L +VY ++ LS K VL + N + V
Sbjct: 145 PLSETQVSYAAEDVLHLAHVYRELQAKLSPE---KYQWVLEDCADMVN----HLGREVEP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+E Y + L + Q LREL WR+R AR +++ +L H L +A++ P ++
Sbjct: 198 QEAYREAKLAWKL-SRAQLAVLRELCAWREREARARNQPRNRILREHSLWPLAKTQPDNL 256
Query: 509 QGIFACCNPVPQTVKE 524
Q + + P+TV++
Sbjct: 257 QSLARIEDMHPKTVRQ 272
>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
Length = 399
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I++ + ++ + +QQ +A+D E+ +Y L+Q+ ++ ++D L + D
Sbjct: 32 VISDNAALLEICNLAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAI-TDF 90
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+L + ++K+ H D+ ++F M DT +FL + + LA L +
Sbjct: 91 SPFVALLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQ 150
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +++ DK L +W RPL + +QYA D YLL +Y ++ +L+ +
Sbjct: 151 QYLNIEIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQA----- 205
Query: 430 TFTNSRNICKLKYEKP-----VFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
R+ C+L K +E+ Y++I + LN + LR L KWR +A ++
Sbjct: 206 ----VRDDCELALAKTHKLQERDSEKAYLDIPNAWK-LNPLELSRLRILAKWRQNVAIER 260
Query: 485 DESTGYVLPNHMLLQMAQSIPRD 507
D + Y++ + L ++A++ PR+
Sbjct: 261 DLALSYIVKSEHLWKVAKNNPRN 283
>gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f]
gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f]
Length = 525
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 12/242 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYI-VDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
IA D E + Y L+QI + I +D + L DL L EV+ V H A
Sbjct: 81 IAFDAERASGYRYSQRAYLVQIRRQGAGTILIDPVAL-PDLTSLQEVVGPTEWV--LHAA 137
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL+ +FDT A + L R L +++ +K DW RP
Sbjct: 138 SQDLPCL-AELGLHPTSLFDTELAGRLLGYERVGLGAMVERVLGFALEKGHSAADWSTRP 196
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L K + F I +P
Sbjct: 197 LPEPWLRYAALDVELLVELRDRLEAEL--VERDKIDFARQEFA---AIAAAPPREP--RA 249
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E + H +Q A+R +++ RD++AR +D + G VLP+ ++ P DI
Sbjct: 250 EPWRRTSGIHRARTRRQLAAVRAMWQARDKVARTRDLAPGRVLPDGAIMDAVLKAPADIA 309
Query: 510 GI 511
+
Sbjct: 310 AL 311
>gi|429096753|ref|ZP_19158859.1| Ribonuclease D [Cronobacter dublinensis 582]
gi|426283093|emb|CCJ84972.1| Ribonuclease D [Cronobacter dublinensis 582]
Length = 373
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 15/246 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q FG+ DT F+ P A L++
Sbjct: 64 APFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVVASFVGHPLSCGFATLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 124 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVRDAGW-------- 175
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E Y I + L Q LR L WR R AR++D
Sbjct: 176 -LTAALNECRLMTQRRGEVLDPDEAYREITNAWQ-LRPHQLACLRLLAGWRLRKARERDM 233
Query: 487 STGYVL 492
+ +V+
Sbjct: 234 AVNFVV 239
>gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 374
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ ++ ++ ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITSNIGLQQVCAQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + K H D++ FG V DT FL P A L+
Sbjct: 64 APFQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E YA D YLL + + D AA G N L
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAA--GWMNAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C+ K + P + N ++ L + L+ L +WR R AR++D +
Sbjct: 182 ---ECLLLCQRKQDILAPALAYREFGNAWQ----LRGRHLACLQRLAEWRLRKARERDSA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ LLQ+A+ +P +
Sbjct: 235 VNFVVREENLLQVARCLPTSL 255
>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340790381|ref|YP_004755846.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|376273517|ref|YP_005152095.1| ribonuclease D [Brucella abortus A13334]
gi|423167117|ref|ZP_17153820.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|423170507|ref|ZP_17157182.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|423173412|ref|ZP_17160083.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|423177302|ref|ZP_17163948.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|423179938|ref|ZP_17166579.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|423183070|ref|ZP_17169707.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|423185988|ref|ZP_17172602.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
gi|423189128|ref|ZP_17175738.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340558840|gb|AEK54078.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|363401123|gb|AEW18093.1| ribonuclease D [Brucella abortus A13334]
gi|374540555|gb|EHR12055.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|374542005|gb|EHR13495.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|374542741|gb|EHR14228.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|374549783|gb|EHR21225.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|374550302|gb|EHR21741.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|374550586|gb|EHR22022.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|374558786|gb|EHR30179.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|374559376|gb|EHR30764.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
Length = 385
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|283458265|ref|YP_003362884.1| ribonuclease D [Rothia mucilaginosa DY-18]
gi|283134299|dbj|BAI65064.1| ribonuclease D [Rothia mucilaginosa DY-18]
Length = 449
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 16/285 (5%)
Query: 231 DFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCL 289
D + E P +P +IT + + +L +A+D E Y L
Sbjct: 52 DVVPLEAPSSPIP------TLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGSRAFL 105
Query: 290 MQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD 349
+Q+ D+ Y++D + DL ++N+ L D V H A D L G+ +FD
Sbjct: 106 VQLKREDQLYLIDPEAFK-DLRIINDALADAEWV--IHAAIQDFPSLDM-LGMRPNRLFD 161
Query: 350 THQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
T + + R +L ++ K DW RPLPE + YA D L+ +
Sbjct: 162 TELGARLAGLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLR 221
Query: 410 DCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA 469
D ++ DL GK L F +CK + P E + L + +Q A
Sbjct: 222 DALE-DL-LRQQGKLQYALEEF---EYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTA 276
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
LR L+ RD +AR KD +LP+ +++ A+++PR++ + A
Sbjct: 277 LRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAVMAI 321
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 516 NPVPQT-VKEHVLDIHAII-LKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHD----- 568
P+P++ + +LD+ +I L+ L+ L + KLQ +L+ + + V P D
Sbjct: 200 RPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYLCKTPVKDPTDQPERW 259
Query: 569 ---------SNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIF 619
+ +Q ALR L+ RD +AR KD +LP+ +++ A+++PR++ +
Sbjct: 260 RKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAVM 319
Query: 620 AC 621
A
Sbjct: 320 AI 321
>gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
Length = 384
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
Length = 396
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 14/272 (5%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
P TP+++ T E+V ++ +L+ + + ID E+ R+Y CL+Q++ + ++D
Sbjct: 6 PTFPTPVLL-TSSEEVARICEKLQNEPFVTIDTEFVRERTYWPELCLVQLAGTEDVVLID 64
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
TL DL L +L + KVFH A D++ F +FDT A Q
Sbjct: 65 TLAPGIDLAPLGALLAKPDCTKVFHAARQDLEIFLHIFDRLPASVFDTQVAAMVAGFGDQ 124
Query: 363 SLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420
+ Y L+ DK + DW RPL + I YA TD +L VYD ++ L+
Sbjct: 125 -VGYDSLVGAITGRSIDKAHRFSDWSARPLSKAQIAYAATDVTHLRTVYDALRKQLA--- 180
Query: 421 HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKWRDR 479
+Q+ + + +S + E+ F + + A +N++ LRE+ WR++
Sbjct: 181 --EQDRL--HWADSEQ--AILTEEKTFRPDPRRLWEKLKARTSNRRMLGILREVTAWREQ 234
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
A++ D V+ + LL++A P ++ +
Sbjct: 235 EAQNADIPRQRVIRDESLLEIAAVHPDTVEAL 266
>gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
Length = 385
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEKIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4]
gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4]
Length = 368
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 150/342 (43%), Gaps = 17/342 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + +T+LV + +Q + + +D E+ R+Y L+Q+ + ++D + + DL
Sbjct: 6 VEDDASLTELVDKYRQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAV-SDLS 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR-QSLAYLLKH 370
+L +++ V H D++ L + +FD+ A F A L++H
Sbjct: 65 AFWALLERDDMISVLHSCSEDLEVLARYGRCQPKVLFDSQIAAAFCGWGHGMGYAKLVEH 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
V DK DW RPL + +QYA D YL +Y + L + G+ +L
Sbjct: 125 CLGVQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQES--GRMPWLLE- 181
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
+ + + E P + Y+ + + L Q Y L+ L KWR + A D+D + G+
Sbjct: 182 --EGERMTQGRLESPD-GDTAYLKVKNAFQLSPKQLAY-LKVLAKWRLQKALDRDLALGF 237
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE--KL 548
V+ +H LL +A+ P+ IF Q + H I A + KA L +L + ++ L
Sbjct: 238 VIKDHALLALAKKQPKSTGEIFRMTELTEQEKRLHAKAIIAEMAKADLDNLPEAIDVIAL 297
Query: 549 QPSLDGMKKKQQQ---QVSPPHDSNNQ---QKYALRELYKWR 584
+P K +Q QV+ H + K + E +WR
Sbjct: 298 KPGYKSAFKAIKQALTQVAETHQVPMELLGSKRHIHEYLQWR 339
Score = 42.7 bits (99), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 555 MKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 614
+K K Q+SP +Q L+ L KWR + A D+D + G+V+ +H LL +A+ P+
Sbjct: 201 LKVKNAFQLSP------KQLAYLKVLAKWRLQKALDRDLALGFVIKDHALLALAKKQPKS 254
Query: 615 IQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVE--KLQPSLDGMKKKKQQQ--Q 670
IF Q + H I A + KA L L + ++ L+P K +Q Q
Sbjct: 255 TGEIFRMTELTEQEKRLHAKAIIAEMAKADLDNLPEAIDVIALKPGYKSAFKAIKQALTQ 314
Query: 671 VSPPH 675
V+ H
Sbjct: 315 VAETH 319
>gi|419801555|ref|ZP_14326779.1| ribonuclease D [Haemophilus parainfluenzae HK262]
gi|419845060|ref|ZP_14368347.1| ribonuclease D [Haemophilus parainfluenzae HK2019]
gi|385193471|gb|EIF40833.1| ribonuclease D [Haemophilus parainfluenzae HK262]
gi|386416986|gb|EIJ31478.1| ribonuclease D [Haemophilus parainfluenzae HK2019]
Length = 383
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 7/264 (2%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I E++ Q+ +QQ +A+D E+ +Y L+Q+ ++ ++D L + D
Sbjct: 13 LIQNNEELAQVCQLARQQSAVALDTEFMRISTYYPKLGLIQLYDGERVSLIDPLSI-TDF 71
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D+ + K+ H + D+ ++F M DT +FL + LA L+
Sbjct: 72 SPFVELLRDQQVTKILHACNEDLLVFLQEFDALPQPMMDTQIMARFLGFANSAGLAKLVL 131
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+Y ++ DK +W RPL +QYA D YLL VY M+++L A + Q ++
Sbjct: 132 NYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIEL-AQSPWLQAVIDD 190
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
KL P + Y++I LN + L+ L KWR A ++ +
Sbjct: 191 CQLAISKTSKLDDRDP---NKAYLDIPNVWK-LNPLELARLQLLAKWRQETAMARNLALS 246
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFA 513
YV+ + L ++A++ PR+ + A
Sbjct: 247 YVVKSDNLWKVAKNNPRNTSEMLA 270
>gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
Length = 404
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 22/268 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + L L Q + +D E+ +Y+ CL+Q++ + +VD L DL
Sbjct: 28 VITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPLP-NLDL 86
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++ + +VKVFH A DI+ + ++ G+ + +FDT A L S L+K
Sbjct: 87 SPFYALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDTQIAAMALGHGDAISYGALVK 146
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV-- 427
+ DKT+Q DW RPL ++YA D YL VY +K L G++ +
Sbjct: 147 KLLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQT--GREPWLEE 204
Query: 428 -LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA---LRELYKWRDRIARD 483
++ T+ + F+ + L + + A + EL WR+R A+D
Sbjct: 205 EVAVLTDPKTYA--------FDPADAWKRLK----LGGKSRTARSIIMELAAWRERAAQD 252
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGI 511
++ G VL + + ++A+ PR ++ +
Sbjct: 253 ENVPRGRVLKDEAIYEVAKHAPRTLETL 280
>gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6]
gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6]
Length = 390
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 9/253 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+ITE + + ++ S+ ++ + +D E+ R+Y L+Q+ D ++D L D+
Sbjct: 24 IITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDTLSLIDPTVL-TDM 82
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D +++KV H D++ G V M DT FL + A L++
Sbjct: 83 SAFTELLNDASVMKVLHACGEDLEVFHNALGAIPVPMVDTQIMAAFLGHGLSTGFAALVE 142
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +V+ DK+ DW RPL + ++YA D HYLL +Y+ + + A + S
Sbjct: 143 QYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAGWWQAAQQES 202
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
S+ + K + Y++I + L ++ L+ L WR + A +D +
Sbjct: 203 ELQASKRV------KTPNADNAYLDI-KGAWQLKPRELAILKPLATWRMQEAIRRDLALN 255
Query: 490 YVLPNHMLLQMAQ 502
+V H LL +A+
Sbjct: 256 FVFKEHDLLTVAR 268
>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella inopinata BO1]
gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella inopinata BO1]
gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
Length = 385
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEKIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|453077526|ref|ZP_21980272.1| ribonuclease D [Rhodococcus triatomae BKS 15-14]
gi|452759201|gb|EME17574.1| ribonuclease D [Rhodococcus triatomae BKS 15-14]
Length = 399
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 11/245 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYI-VDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q + VD + + +DL L V+ + V H A
Sbjct: 22 LAVDAERASGFRYSNRAYLLQFRRAGAGTVLVDPIPVADDLAPLAAVV--NPLEWVLHSA 79
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D D+ + D GL +FDT A + R LA +++ ++ K DW RP
Sbjct: 80 DQDLPGM-ADLGLRPASLFDTELAGRLAGFDRVGLAAVVERLLGLELQKGHGADDWSRRP 138
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPE + YA D L+ + D M +L + GK + F + R + KP
Sbjct: 139 LPESWLNYAALDVEVLVELRDAMAAELD--SQGKTDWAAQEFEHIR-LAGPPKPKP---- 191
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+ + + H+L + +Q A+REL++ RD IA +D + G +LP+ + A + P +
Sbjct: 192 DRWRRTSQIHSLKSPRQLAAVRELWRARDEIAARRDIAPGRILPDSAITAAAAANPMSVD 251
Query: 510 GIFAC 514
+ A
Sbjct: 252 ALRAL 256
>gi|342179233|sp|C6C608.2|RND_DICDC RecName: Full=Ribonuclease D; Short=RNase D
Length = 374
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 9/259 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + ++++ S+ ++ ++A+D E+ R+Y L+Q+ ++ ++D L +
Sbjct: 5 LITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSITV-W 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ ++L D + K H D++ FGL DT FL P A L+
Sbjct: 64 QPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E QYA D +YLL + + + ++A + +
Sbjct: 124 DYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWE-----A 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
R +C+ K + + E+ Y I + L + L++L WR R AR++D +
Sbjct: 179 ALDECRQLCQRK-QDVLAPEQAYREIGNAWQ-LKGRHLACLQKLADWRLRKARERDSAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDI 508
+++ L Q+A+ +P +
Sbjct: 237 FIVREEHLGQVARYLPGSL 255
>gi|254512186|ref|ZP_05124253.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
gi|221535897|gb|EEE38885.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
Length = 385
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 28/273 (10%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST----RDKDYIVDTLKLR 307
+T +Q+ +E Q + +D E+ R+Y CL+Q++ D +VD L
Sbjct: 4 LTTTQQLAAFCAEAAQYPYVTVDTEFLRERTYYSKLCLVQLAVPAEGDDSAVLVDPLAEG 63
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY- 366
L+ L E+ ++++VKVFH A D++ D G++ +FDT A Q + Y
Sbjct: 64 MSLDPLYELFRNESVVKVFHAARQDLEIFWVDAGVFPTPLFDTQVAAMVCGFGEQ-VGYE 122
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG--- 422
L++ C DKT + DW RPL E YA D +L +Y+ + +L
Sbjct: 123 TLVRKICKEGVDKTSRFTDWSRRPLTEAQKSYALADVTHLRKIYEYLAGELKKTKRDHWV 182
Query: 423 KQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY--ALRELYKWRDRI 480
+ L + T + +I +P EE + R N K+ +REL ++R+
Sbjct: 183 AEELRILTRAETYDI------RP---EEAW----RRVKTRTNSAKFLAVVRELAQFREAY 229
Query: 481 ARDKDESTGYVLPNHMLLQMAQS---IPRDIQG 510
A++ + V + L++MA + P D+ G
Sbjct: 230 AQENNVPRSRVFKDDALIEMASTKPKTPSDLGG 262
>gi|402701916|ref|ZP_10849895.1| ribonuclease D [Pseudomonas fragi A22]
Length = 377
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 21/286 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E + +A+D E+ ++ L+QI ++ Y++D L + ++ +
Sbjct: 8 IRDNDSLGQHCAEWQSLPFVALDTEFMRVDTFYPIAGLIQIGDGERAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L+++L + +VKV H D++ L + G +FDT A +L + S+ Y L+K
Sbjct: 67 PLSDLLENPAVVKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVK 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E I YA D +L VY ++ LS K VL
Sbjct: 126 EVLDLDLPKGETRSDWLQRPLSETQISYAAEDALHLAEVYVLLRPRLS---DEKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LRE+ WR++ AR +D
Sbjct: 183 --DGAELVANLRREVDPY------EVYREAKLAWKLSPAQLAVLREICAWREQQARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
V+ H L +A++ P ++ + + P+TV+ E +LD+
Sbjct: 235 PRNRVVREHALWPLAKTQPDNLVALARIEDMHPRTVRQDGEFLLDM 280
>gi|345850282|ref|ZP_08803281.1| ribonuclease D [Streptomyces zinciresistens K42]
gi|345638219|gb|EGX59727.1| ribonuclease D [Streptomyces zinciresistens K42]
Length = 385
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 12/245 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQIS-TRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L E L+ + V H A
Sbjct: 22 VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-PDLSGLGEALS--GVEWVLHAA 78
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L ++ G+ +FDT A + PR L +++ +K DW RP
Sbjct: 79 TQDLPCL-REIGMAPTRLFDTELAGRLAGFPRVGLGAMVESVLGFVLEKGHSAVDWSTRP 137
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L GK F + + K +
Sbjct: 138 LPEPWLRYATLDVELLVDLRDALEKELD--RQGKLEWAHQEFDAIASAPPAEPRKDPWRR 195
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL++ RDRIA+ +D S G VL + +++ A ++P +Q
Sbjct: 196 TSGM-----HKVRRRRQLAVVRELWQTRDRIAQRRDVSPGKVLSDTAIVEAALALPATVQ 250
Query: 510 GIFAC 514
+ A
Sbjct: 251 ALAAV 255
>gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 374
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ ++ ++ ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITSDIGLQQVCTQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + K H D++ FG V DT FL P A L+
Sbjct: 64 APFQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E YA D YLL + ++L A G N L
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPM--AIQLVADTEAAGWMNAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C+ K + P + N ++ L + L+ L +WR R AR++D +
Sbjct: 182 ---ECLLLCQRKQDILAPALAYREFGNAWQ----LRGRHLACLQRLAEWRLRKARERDSA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ LLQ+A+ +P +
Sbjct: 235 VNFVVREENLLQVARCLPTSL 255
>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
Length = 377
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + +L + +A+D E+ ++ L+QI ++ Y++D L L D +
Sbjct: 8 IRDDQTLAELCQRWRTLPFVALDTEFMRVDTFYPKAGLIQIGDGERAYLIDPL-LIVDWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L E+L D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLGELLEDAGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLG-FSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL + + YA D +L ++ ++ LS K VL
Sbjct: 126 EVLGLELPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFAALRPRLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E V E Y ++ + L QQ LREL WR+R AR +D
Sbjct: 183 D--GAELVAALRRE--VEPETLYRDVKLAWKL-GRQQLAVLRELCAWREREARSRDVPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+L H L MA++ P ++ + P+T+++
Sbjct: 238 RILKEHSLWPMAKNQPDNLSALAKIDEMHPRTIRQ 272
>gi|348029631|ref|YP_004872317.1| ribonuclease D [Glaciecola nitratireducens FR1064]
gi|347946974|gb|AEP30324.1| ribonuclease D [Glaciecola nitratireducens FR1064]
Length = 388
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 11/276 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I PE ++ + +AID E+ R+ L+Q+ + ++D + L +DL
Sbjct: 6 IDTPEALSDFCERISAADALAIDTEFVRTRTLVPQLGLIQVYDGEHLGLIDPVAL-DDLS 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+++L + +I+KV H D+ L + + +FD+ A L M Q+L Y L++
Sbjct: 65 PFSDILVNPSIIKVLHSCSEDLDALWFNLKVIPSPLFDSQFAANLLDMG-QTLGYANLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+ DK DW RPL + YA D +LL VY + + + S
Sbjct: 124 KILDIHVDKGESRTDWIARPLSPEQLVYAAADVFHLLPVYRQIAEQVEELGQTEWVFAES 183
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
F + K + E PV + Y++I +++ + Q + AL+E+ WR + A+ +D +
Sbjct: 184 EFLS----LKKRAEIPV--DLTYLSI-KNNWKIGAQSRQALKEIASWRLQQAQKRDMAIN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
+VL +L++A +P + +F P+ + H
Sbjct: 237 FVLREQGMLEVAMKLPENKAKLFQLQTITPKEARIH 272
>gi|441169030|ref|ZP_20969102.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440615515|gb|ELQ78703.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 385
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 11/267 (4%)
Query: 251 MITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
M E++ ++V+ +A+D E + Y L+Q+ ++ D
Sbjct: 1 MTATAEELAEVVTAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSVLIDPVGCPD 60
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L L E +TD V H A D+ L +D G+ +FDT A + R L +++
Sbjct: 61 LSALGEAITDAEWV--LHAATQDLPCL-RDIGMVPSRLFDTELAGRLAGFARVGLGAMVE 117
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ +K DW RPLPEP ++YA D L+ + D ++ +LS GK
Sbjct: 118 NVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEDELS--RQGKLEWAHQ 175
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
F K + M H + +Q +REL+ RD +A+ +D S G
Sbjct: 176 EFAAIAAAPPAPPRKDPWRRTSGM-----HKVRRRRQMAVVRELWTTRDEVAQRRDISPG 230
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCN 516
VL + +++ A ++P + + A
Sbjct: 231 KVLGDAAIIEAALNLPPNTHALAALAG 257
>gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas protegens Pf-5]
gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas protegens Pf-5]
Length = 377
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 21/286 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + QL ++ +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 IRDNDSLGQLCAQWQQLPFVALDTEFMRVDTFYPIAALLQIGDGQRAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D K DW RPL E + YA D +L V+ ++ LS K VL
Sbjct: 126 EVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAQVFTELRPRLS---EDKYRWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR+R AR ++
Sbjct: 183 D--GAELVANLRREVDPYE------VYREAKLAWKLSRAQLAVLRELCAWREREARARNL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
++ H L +A++ P ++ + + P+TV+ E +LD+
Sbjct: 235 PRNRIVREHALWPLAKTQPDNLSALAKIEDMHPRTVRQDGEFLLDL 280
>gi|124809664|ref|XP_001348647.1| Rrp6 homologue, putative [Plasmodium falciparum 3D7]
gi|23497545|gb|AAN37086.1| Rrp6 homologue, putative [Plasmodium falciparum 3D7]
Length = 1136
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 217 HPYEYELDLYVPK----------EDFLKCE-EPKQALPLSDTPLMMITEPEQVTQLVSEL 265
HPY+YE++ + + +FL+ E K+ ++ +I + +++ +
Sbjct: 496 HPYKYEIENIIKEYRNDNNNVTISNFLEINIELKKLGDINKKAYKIIDNKNDLINMINNI 555
Query: 266 K---QQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNI 322
K ++++I+I ++ + R+Y+G+T ++ I T + +YI+D + EDL ++N++ TD NI
Sbjct: 556 KLNYEEKKISIMIKVNYKRTYRGFTSIIMIGTNNMNYIIDVFNMFEDLYIINDITTDPNI 615
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDV---DSDKT 379
+K+ + A + I LQKDF +Y V +FD +L + +L YL+ Y + +K
Sbjct: 616 LKITYNAPNIINQLQKDFSIYFVNIFDIAICSNYLNF-KNNLNYLIYKYFNTVLYYKNKI 674
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
Q RP+ + + + +L ++D +K+D+
Sbjct: 675 LQNV-LITRPIEPDMVDVIQNEFTFLYDLFDYIKIDI 710
>gi|410666113|ref|YP_006918484.1| ribonuclease D [Simiduia agarivorans SA1 = DSM 21679]
gi|409028470|gb|AFV00755.1| ribonuclease D [Simiduia agarivorans SA1 = DSM 21679]
Length = 383
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 16/298 (5%)
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
++ P+ + TE E + QL + QQ IAID E+ ++Y + L+Q+ Y++D
Sbjct: 4 IATDPIWVDTEAE-LAQLCARWSQQAAIAIDTEFMRSQTYYPHAGLIQVGDGKGCYLIDP 62
Query: 304 LKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQ 362
L ++ DL L ++L + +++KV H D++ + G+ +FDT A F +
Sbjct: 63 LAIK-DLSALAQLLVNPSVIKVIHSCSEDLETFRFLLGVVPKPLFDTQVAAAFANIGFSM 121
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
A L+K ++ DK DW RPL + + YA D YLL VY + + L A
Sbjct: 122 GYANLVKDQLGIELDKGETRSDWMQRPLSQSQMHYAALDVAYLLVVYGKILIRLKA---- 177
Query: 423 KQNLVLSTFTNSRNICK---LKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
L + + C E P ++ Y + + L +Q L+ L WR++
Sbjct: 178 -----LDRLSWVQEECAQLVANAEAPDQFDDAYTKVKLAWKLYPDQLAI-LKPLCIWREQ 231
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
AR D ++ ++A+ P ++ + A +T+K + + + A+
Sbjct: 232 EARKLDVPRNRLMKEGAAWEVARRKPTTVKQLSAIDGMGNRTLKHYADTVLGFVADAQ 289
>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|384211128|ref|YP_005600210.1| ribonuclease D [Brucella melitensis M5-90]
gi|384408226|ref|YP_005596847.1| ribonuclease D [Brucella melitensis M28]
gi|384444837|ref|YP_005603556.1| ribonuclease D [Brucella melitensis NI]
gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
gi|349742833|gb|AEQ08376.1| ribonuclease D [Brucella melitensis NI]
Length = 385
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEIAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|386843175|ref|YP_006248233.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103476|gb|AEY92360.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796466|gb|AGF66515.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 384
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 13/247 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L E L+ + V H A
Sbjct: 22 VAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-PDLSGLGEALS--GVEWVLHAA 78
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L ++ G+ +FDT A + PR L +++ +K DW RP
Sbjct: 79 TQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVDWSTRP 137
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L GK L F + + K +
Sbjct: 138 LPEPWLRYAALDVELLVDLRDALEKELD--RQGKLEWALEEFDAIASAPPAEPRKDPWRR 195
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL++ RDRIA+ +D S G VL + +++ A ++P ++
Sbjct: 196 TSGM-----HKVRRRRQLAVVRELWQTRDRIAQRRDVSPGKVLSDTAIVEAALALPGNVH 250
Query: 510 GIFACCN 516
+ A N
Sbjct: 251 -VLAGLN 256
>gi|350563555|ref|ZP_08932376.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
gi|349778690|gb|EGZ33041.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
Length = 390
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 136/277 (49%), Gaps = 11/277 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLRED 309
+IT+ + L ELKQ + +A+D E+ ++ L+QI+T YI+D L ++ +
Sbjct: 5 LITDDTALNTLCIELKQHKWLAVDTEFMRQDTFFAQLALIQIATPTLAVYIIDPLSIK-N 63
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L L ++ ++ NI KVFH A D++ L + + +FDT A FL + Q S A L+
Sbjct: 64 LIPLWQLFSNTNITKVFHAARQDLEILYQQAECMPLPIFDTQIASVFLGLGDQASYARLI 123
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ C + +K W RPL + ++YA D +L Y + L + ++ +
Sbjct: 124 EKLCGENINKDQARTQWLDRPLLDEQLEYAAADVWHLAQAYPIL---LKSLTPTQRQAIQ 180
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+ F N + + E + ++ + S +L +N+Q L+ L WR+ A ++
Sbjct: 181 ADFNNLTDPSLYRTEPA----QAWLRMKPSSSL-SNKQLGLLKHLAAWREEQAVTLNQPR 235
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
+++ + L+Q+A+ R++Q + +T+++H
Sbjct: 236 KWIVNDEALIQLAKRPVREVQDLHKLNQFDGETIRQH 272
>gi|417953178|ref|ZP_12596226.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342817710|gb|EGU52587.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 389
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 12/311 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ Q+ ++ + + +D E+ R+Y L+Q+ +K ++D + ED+
Sbjct: 23 IITQSSQLEEVCQSARNVDVVMLDTEFVRTRTYYPQLGLIQLFDGEKLSLIDPTVI-EDM 81
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D +++KV H D++ FG M DT FL + A L++
Sbjct: 82 TAFVELLKDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFLGHGLSTGFAALVE 141
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+Y V+ DK+ DW RPL + ++YA D +YL +Y+ + ++ A + S
Sbjct: 142 NYLGVELDKSESRTDWLARPLSDKQLEYAAADVYYLQPLYEQLFEKITQAGWWEAAQQES 201
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
S+ I K V E Y+++ + L + L+ L WR + A +D +
Sbjct: 202 DLAASKRI------KTVNQEMAYLDV-KGAWQLKPSELAILKPLATWRLKEALRRDLALN 254
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ 549
+V + LL +A+ ++ + P++V+ H I +I+ +AR+ + + EK++
Sbjct: 255 FVFKENDLLTIAKLGIQN-RNRMEQEGMDPRSVQRHSARIISIVKQARMTPVEEYPEKIE 313
Query: 550 PSLD--GMKKK 558
+D G K+K
Sbjct: 314 RLMDMPGYKQK 324
>gi|429067324|ref|ZP_19130870.1| ribonuclease D [Escherichia coli 99.0672]
gi|427322382|gb|EKW84015.1| ribonuclease D [Escherichia coli 99.0672]
Length = 371
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L+D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILSDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 371
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 12/311 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ Q+ ++ + + +D E+ R+Y L+Q+ +K ++D + ED+
Sbjct: 5 IITQSSQLEEVCQSARNVDVVMLDTEFVRTRTYYPQLGLIQLFDGEKLSLIDPTVI-EDM 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L D +++KV H D++ FG M DT FL + A L++
Sbjct: 64 TAFVELLKDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFLGHGLSTGFAALVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+Y V+ DK+ DW RPL + ++YA D +YL +Y+ + ++ A + S
Sbjct: 124 NYLGVELDKSESRTDWLARPLSDKQLEYAAADVYYLQPLYEQLFEKITQAGWWEAAQQES 183
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
S+ I K V E Y+++ + L + L+ L WR + A +D +
Sbjct: 184 DLAASKRI------KTVNQEMAYLDV-KGAWQLKPSELAILKPLATWRLKEALRRDLALN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ 549
+V + LL +A+ ++ + P++V+ H I +I+ +AR+ + + EK++
Sbjct: 237 FVFKENDLLTIAKLGIQN-RNRMEQEGMDPRSVQRHSARIISIVKQARMTPVEEYPEKIE 295
Query: 550 PSLD--GMKKK 558
+D G K+K
Sbjct: 296 RLMDMPGYKQK 306
>gi|419391718|ref|ZP_13932533.1| ribonuclease D [Escherichia coli DEC15A]
gi|419396787|ref|ZP_13937557.1| ribonuclease D [Escherichia coli DEC15B]
gi|419402122|ref|ZP_13942847.1| ribonuclease D [Escherichia coli DEC15C]
gi|419407265|ref|ZP_13947956.1| ribonuclease D [Escherichia coli DEC15D]
gi|419412800|ref|ZP_13953456.1| ribonuclease D [Escherichia coli DEC15E]
gi|378238442|gb|EHX98443.1| ribonuclease D [Escherichia coli DEC15A]
gi|378245138|gb|EHY05076.1| ribonuclease D [Escherichia coli DEC15B]
gi|378247981|gb|EHY07896.1| ribonuclease D [Escherichia coli DEC15C]
gi|378255515|gb|EHY15373.1| ribonuclease D [Escherichia coli DEC15D]
gi|378259665|gb|EHY19477.1| ribonuclease D [Escherichia coli DEC15E]
Length = 371
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 136/308 (44%), Gaps = 17/308 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL--PMPRQSLAYLL 368
L +L D +I K H D++ FG + DT F PM R A ++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSR-GFASMV 118
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 119 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----L 172
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 173 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAV 231
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 232 NFVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEAL 286
Query: 549 -QPSLDGM 555
QP L+ M
Sbjct: 287 PQPMLNLM 294
>gi|432680384|ref|ZP_19915761.1| ribonuclease D [Escherichia coli KTE143]
gi|431221314|gb|ELF18635.1| ribonuclease D [Escherichia coli KTE143]
Length = 371
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-SDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQSLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|383458490|ref|YP_005372479.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
gi|380734173|gb|AFE10175.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
Length = 381
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 12/273 (4%)
Query: 265 LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324
L+ E+A+DLE +++ C +Q+ T ++ DTL+ D +L+ ++ D K
Sbjct: 16 LEAAPEVAVDLEADAMHAFRARLCFLQLGTDTDIFLFDTLQPGVDPRLLSPMMEDPARTK 75
Query: 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFD 384
FH A D+++L + G+ V G+FDTH+A L P+ LA L + V+ K Q D
Sbjct: 76 YFHAAQGDLQFL-AEAGVRVRGLFDTHRAVTLLGWPKVGLADLARERLGVELPKEHQQSD 134
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
+ RPLP Y D YL + ++ A + +++ + +C +
Sbjct: 135 FSLRPLPPGMRDYIANDVRYLCELGRQVR-----DACREADILEEVLLDCERMCAEAEAR 189
Query: 445 PVFNEEGYMNIFRSHALLNNQQ---KYALRE-LYKWRDRIARDKDESTGYVLPNHMLLQM 500
P E + R+ L+ Q YA+ + L+K R A + G +L N + +
Sbjct: 190 PEVGAEYKPKLSRTG--LSTAQYALAYAIAQGLHKLRLEWAEKDNVPMGRMLSNMAITDL 247
Query: 501 AQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
A P + + V+ H DI A+I
Sbjct: 248 ALKQPDTHKDLARAAGVRGAVVRAHGDDILALI 280
>gi|298245785|ref|ZP_06969591.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
gi|297553266|gb|EFH87131.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
Length = 402
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT--------CLMQISTRDKDYIV 301
+ I EQ+ V LKQ +AID E+ RS + L+Q++ + ++V
Sbjct: 37 LWIENSEQLLHAVELLKQSPVVAIDAEFTQVRSLSAESNGSTVPRLALLQLAIEKQCFVV 96
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK-FLPMP 360
DTL+L+ DL LN V++D +++ + HGA +D++ + + G++V +D +
Sbjct: 97 DTLRLK-DLSPLNTVVSDPDVIVLLHGAGADLR-VMAERGVFVAHYYDLEATSRSVFGQH 154
Query: 361 RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412
SLA +L + DK+ Q DW RPLP + YA D L +Y +
Sbjct: 155 ESSLAAMLWRAFHMRLDKSLQRTDWTRRPLPPAMVAYAARDAEATLALYSWL 206
>gi|226329911|ref|ZP_03805429.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198]
gi|225200706|gb|EEG83060.1| ribonuclease D [Proteus penneri ATCC 35198]
Length = 372
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 9/259 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + + +IA+D E+ R+Y + L+Q+ + ++D L ++ D
Sbjct: 5 LITTDTALDTACKAASEASQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLAIK-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
E+LT++ I+K H D++ FG M DT FL P A L++
Sbjct: 64 TPFVELLTNQGIMKFLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFLGHPISCGFATLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +V DK+ DW RPL E QYA D YLL + + + + A + +
Sbjct: 124 KYENVALDKSESRTDWLARPLTEKQCQYASGDVFYLLPLAEKLIKEAEEAGY------MD 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + + ++ V E Y +I + L QQ L+ L +WR A+ +D +
Sbjct: 178 AIADECEMIAERRQETVVPELAYRDISNAWQ-LKGQQLACLQMLAQWRLNQAKSRDMALN 236
Query: 490 YVLPNHMLLQMAQSIPRDI 508
+V+ L +A+ +P +
Sbjct: 237 FVVREEHLWSVARYLPSSL 255
>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
biovar Abortus 2308]
Length = 385
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDELAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|408827128|ref|ZP_11212018.1| ribonuclease D [Streptomyces somaliensis DSM 40738]
Length = 384
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 12/247 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L+ L + H A
Sbjct: 21 VAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVGC-PDLSALSGALDGTEWI--LHAA 77
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L ++ G+ +FDT A + PR L +++ +K DW RP
Sbjct: 78 TQDLPCL-REIGMVPSELFDTELAGRLAGFPRVGLGAMVESVLGYVLEKGHSAVDWSTRP 136
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L GK F K +
Sbjct: 137 LPEPWLRYAALDVELLVDLRDALEKELD--RQGKLEWARQEFAAIAAAPPPPPRKDPWRR 194
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL+ RDRIA+ +D S G VL + +++ A ++P D+Q
Sbjct: 195 TSGM-----HKVRRRRQLAVVRELWTVRDRIAQRRDVSPGKVLSDAAIVEAALALPADVQ 249
Query: 510 GIFACCN 516
+ A
Sbjct: 250 ALTALSG 256
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 623
+Q +REL+ RDRIA+ +D S G VL + +++ A ++P D+Q + A
Sbjct: 203 RRRQLAVVRELWTVRDRIAQRRDVSPGKVLSDAAIVEAALALPADVQALTALSG 256
>gi|386286585|ref|ZP_10063773.1| ribonuclease D [gamma proteobacterium BDW918]
gi|385280382|gb|EIF44306.1| ribonuclease D [gamma proteobacterium BDW918]
Length = 371
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 11/273 (4%)
Query: 267 QQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVF 326
Q + +AID E+ ++ L+Q+ + Y++D LK+ D E+L ++I KV
Sbjct: 26 QAEFLAIDTEFIRTDTFYPIAGLLQVGAAGRLYLIDPLKI-SDWSAFTELLRRQDIPKVI 84
Query: 327 HGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFD 384
H D++ Q F + DT + L+Y L+ + +K D
Sbjct: 85 HSCSEDLEVFQVLFQCVPQPLLDTQIGAALAGLGF-GLSYQKLIMECLGIHVEKGETRSD 143
Query: 385 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 444
W RPL E YA D YL VY +K L A LS + + E
Sbjct: 144 WLRRPLSESQCTYAALDVLYLQKVYPLLKQRLEAKG------ALSWWLEDCATITTQAES 197
Query: 445 PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSI 504
P ++ Y I +S L+ +Q+YAL++L WR+ A++++ G V+ + + ++A+ +
Sbjct: 198 PALPQDYYQRI-KSLWKLSQRQQYALQQLCAWREIEAKERNIPRGRVIKDAVCFEVARQM 256
Query: 505 PRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
P D+ + + P +++ + I +I KAR
Sbjct: 257 PNDLGQLGRVKDLSPGSIRRYGDLILELISKAR 289
>gi|403058438|ref|YP_006646655.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402805764|gb|AFR03402.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 374
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ S+ ++ ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITSDIGLQQVCSQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + K H D++ FG DT FL P A L+
Sbjct: 64 APFQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPTPFIDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E YA D YLL + ++L A G N L
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPM--AIQLVADTEAAGWMNAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C+ K + P + N ++ L + L+ L +WR R AR++D +
Sbjct: 182 ---ECLLLCQRKQDILAPALAYREFGNAWQ----LRGRHLACLQRLAEWRLRKARERDSA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ LLQ+A+ +P +
Sbjct: 235 VNFVVREENLLQVARCLPTSL 255
>gi|329296338|ref|ZP_08253674.1| ribonuclease D [Plautia stali symbiont]
Length = 373
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 116/261 (44%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I +Q+ + + +Q + +A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LIDHNDQLAAVCQQARQHRAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLTI-SDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
+L D+ + K H D++ FG M DT F P A ++
Sbjct: 64 APFIALLQDRQLTKFLHAGGEDLEVFLHRFGCLPEPMIDTQILAAFAGQPLSWGFAAMVN 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ ++ DK+ DW RPL E QYA D YLL + + AA + + +
Sbjct: 124 HFNQIELDKSEARTDWLARPLTERQCQYAAADVAYLLPIAHQLVAQTEAAGN-----MAA 178
Query: 430 TFTNSRNIC--KLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ +C +L +P EE + +I + L +Q L+ L WR +AR KD +
Sbjct: 179 ALSECATLCQRRLDVLQP---EEAWRDITNAWQ-LRPRQLAVLQRLAAWRLNLARQKDMA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ L ++A+ +P +
Sbjct: 235 VNFVVREENLWKVARFMPGSL 255
>gi|411003023|ref|ZP_11379352.1| ribonuclease D [Streptomyces globisporus C-1027]
Length = 384
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 13/265 (4%)
Query: 251 MITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
M+T + + ++++ +A+D E + Y L+Q+ +VD +
Sbjct: 1 MVTSDDALARVIAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPVGC-P 59
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L L + H A D+ L +D G+ +FDT A + PR L ++
Sbjct: 60 DLSGLGTALDGTEWI--LHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMV 116
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
++ +K DW RPLPEP ++YA D L+ + D ++ +L GK
Sbjct: 117 ENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELE--RQGKLEWAR 174
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F K + M H + +Q +REL+ RD++A+ +D S
Sbjct: 175 EEFDAIAAAPPAPPRKDPWRRTSGM-----HKVRRRRQMAVVRELWTTRDQVAQRRDVSP 229
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFA 513
G VL + +++ A ++P D+Q + A
Sbjct: 230 GKVLGDAAIVEAALALPADVQALTA 254
>gi|398781584|ref|ZP_10545613.1| ribonuclease D [Streptomyces auratus AGR0001]
gi|396997313|gb|EJJ08278.1| ribonuclease D [Streptomyces auratus AGR0001]
Length = 385
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 13/257 (5%)
Query: 251 MITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
M+ E + ++V+ +A+D E + Y L+Q+ ++D +
Sbjct: 1 MVATGEALAEVVAAFAGGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPVGC-P 59
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L E + D V H A D+ +D G+ +FDT A + R L ++
Sbjct: 60 DLSALGEAIGDAEWV--LHAATQDLP-CMRDIGMVPTRLFDTELAGRLAGFARVGLGAMV 116
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
++ +K DW RPLPEP ++YA D L+ + D ++ +L GK+
Sbjct: 117 ENVLGFALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEEELE--RQGKREWAR 174
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F K + M H + +Q +REL+ RD++A+ +D S
Sbjct: 175 QEFAAIAAAPPPPPRKDPWRRTSGM-----HKVRRRRQMAVVRELWTARDQVAQRRDVSP 229
Query: 489 GYVLPNHMLLQMAQSIP 505
G VL + +++ A S+P
Sbjct: 230 GKVLGDAAIVEAALSLP 246
>gi|345002758|ref|YP_004805612.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
gi|344318384|gb|AEN13072.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
Length = 424
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 12/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + DL L E LT + H A
Sbjct: 62 VAVDAERASGYRYGQRAYLVQLRREGAGSALIDPVGC-PDLSSLGEALTGTEWI--LHAA 118
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L +D G+ +FDT A + PR L ++++ +K DW RP
Sbjct: 119 TQDLPCL-RDIGMVPTSLFDTELAGRLAGFPRVGLGAIVENLLGYALEKGHSAVDWSTRP 177
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+P ++YA D L+ + D ++ +L GK L F + K +
Sbjct: 178 LPDPWLRYAALDVELLVDLRDALEAELE--RQGKLEWALEEFDAIASAPPAPPRKDPWRR 235
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
M H + +Q +REL+ RD++A+ +D S G VL + +++ A ++P +
Sbjct: 236 TSGM-----HKVRRRRQIAVVRELWTARDQVAQRRDISPGKVLGDAAIIEAALAMPVNAH 290
Query: 510 GIFA 513
+ A
Sbjct: 291 ALTA 294
>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
Length = 396
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 39/276 (14%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT + + L + I +D E+ ++Y CL+Q+ D +D L
Sbjct: 1 MTLITTTDALQAFCQSLAGTEYITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGI 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL L +++D +++KVFH A D++ G +FDT A C F +S+
Sbjct: 61 DLTPLFALMSDPSVLKVFHAARQDVEIFWHLSGQIPHPLFDTQVAAMVCGF----GESVG 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG- 422
Y L+ DK+ + DW HRPL E + YA +D +L Y+ +K L+ +
Sbjct: 117 YETLVTKLAGARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSH 176
Query: 423 --KQNLVLSTFTNSRNI--------CKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE 472
++ + + T + + K++ KP F M I L+E
Sbjct: 177 WLEEEMAILTDPATYRVDPDSSYLRLKVRTNKPRF-----MAI--------------LKE 217
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
L WR+R A+ +D+ VL + LL++A P +
Sbjct: 218 LAAWREREAQRRDQPRSRVLRDEALLEIAAHAPTTV 253
>gi|417931726|ref|ZP_12575091.1| 3'-5' exonuclease [Propionibacterium acnes SK182B-JCVI]
gi|340775669|gb|EGR97722.1| 3'-5' exonuclease [Propionibacterium acnes SK182B-JCVI]
Length = 412
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 20/279 (7%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLE-YHNYRSYQGYTCLMQIST 294
EP++ +P +++ PE + + L + +AID E H +R Y CL+Q+
Sbjct: 9 EPREGVP------PVVSSPESLRRTCQALADGRGPVAIDTERAHGFR-YSPRACLIQLR- 60
Query: 295 RDKD--YIVDTLKL--REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
RD ++VD L L L+ L E L + + H A D+ L D GL +FDT
Sbjct: 61 RDGSGTHLVDPLALGGAAGLKPLAEALAETQWI--LHAATQDMPCLAMD-GLRPDDLFDT 117
Query: 351 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 410
A + L +PR L +++HYC V K DW RPLP + YA D L+ + +
Sbjct: 118 ELAGRLLNLPRVGLGPMVEHYCGVTLLKEHSASDWSRRPLPHNWLAYAALDVELLIDLRE 177
Query: 411 CMKLDLSAAAHGKQNLVLSTFTNSRNICK-LKYEKPVFNEEGYMNIFRSHALLNNQQKYA 469
++ DL A GK+ F + + L E+P + + + I + +
Sbjct: 178 KIRNDLLEA--GKEQWARQEFAHLVKVAADLPSEEPRVDPKRWRKISHIGDIRSRAGLQL 235
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
+ +L+ R+ +A D D + G +L + +L+ A+ R +
Sbjct: 236 VHDLWLARENLACDLDIAPGRLLRDEVLVAAARRCDRTV 274
>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
Length = 381
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + EL + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
E++ D ++KVFH A DI+ + L +FDT A C F S++Y
Sbjct: 61 APFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGF----GDSVSYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ +V DK+ + DW RPL + ++YA D +L VY +K +L G+
Sbjct: 117 QLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELD--REGRT- 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S T NI + + + ++ + + L Q+ L+ + WR+R AR ++
Sbjct: 174 ---SWLTEEMNILEARETYDMHPDDAWQRL--KMRLRKPQELAILKYVAAWREREARARN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIYEIAQQQPKDAEAL 254
>gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Photobacterium angustum S14]
gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Photobacterium angustum S14]
Length = 375
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 9/253 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT EQ+ Q + + +D E+ R+ L+Q+ ++ ++D L++ ED+
Sbjct: 5 IITTTEQLQQRCDSARTHTAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPLEV-EDM 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
E L +L D++++KV H D++ Q G MFDT FL L+K
Sbjct: 64 EPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFLGHGISTGFGTLVK 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V+ DK +W RPL E + YA D +YL +++ S A ++ +
Sbjct: 124 EYVGVELDKGEARTNWLARPLTEKQLDYAAADVYYLKPLFE------SLLAKVEERGYME 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ KPV E+ Y++I ++ LN QQ L+++ WR R A+ +D +
Sbjct: 178 ALQQECESVMHRRIKPVDPEKAYLDI-KNAWQLNPQQLAVLQKVAAWRVREAQKRDIALN 236
Query: 490 YVLPNHMLLQMAQ 502
+++ L ++A+
Sbjct: 237 FIVKELHLWKLAR 249
>gi|453363937|dbj|GAC80252.1| ribonuclease D [Gordonia malaquae NBRC 108250]
Length = 404
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 122/282 (43%), Gaps = 18/282 (6%)
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGY 286
P E P+ +P ++T PE+ + + L IA+D E + Y
Sbjct: 8 PDESVTPLTRPRDGVP------DVLTTPEEFSAAAARLAAGTGPIAVDTERASGFRYSQR 61
Query: 287 TCLMQIS-TRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
L+Q+ T +++D + + L + +VLT + H AD D+ L ++ G
Sbjct: 62 AYLIQLRRTGSGSFLLDPIDHPDALTPVIDVLTGPQWI--LHAADQDLPCL-RELGFVCE 118
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT A + L +P+ +LA ++ + + K DW RPLP+ + YA D L
Sbjct: 119 SVFDTELAGRLLNVPKVNLAAMVAGFLHLGLAKGHGAADWSQRPLPDDWLNYAALDVEVL 178
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQ 465
+ + D + L A G++ F L P + + + L +
Sbjct: 179 VELRDAVSAALREA--GRETWAAQEFA-----AVLARPAPEPKPDRWRRTSNLNTLKTTR 231
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
+ +REL+ R+ +AR +D + VLP+ ++ A+S PR+
Sbjct: 232 EYAVVRELWTEREEVARRRDVAPSRVLPDAAIVNAAKSAPRN 273
>gi|338211062|ref|YP_004655113.1| 3'-5' exonuclease [Runella slithyformis DSM 19594]
gi|336304879|gb|AEI47981.1| 3'-5' exonuclease [Runella slithyformis DSM 19594]
Length = 383
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 117/255 (45%), Gaps = 11/255 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEY-HNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+MI E+ ++V L + AID E+ HN+ +Y CL+QI+ D Y++D +
Sbjct: 5 VMIQTQEEFEKVVKHLSGLEAFAIDTEFDHNHYAYGFTLCLIQIAAPDTCYLIDPFSI-P 63
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L VL D+ KVFH D++ L G +FDT A K L + L+ +L
Sbjct: 64 DLTSLWRVLEDERSEKVFHDCGEDLRLLHLH-GCSPRNIFDTSVAAKMLSFEKIGLSSVL 122
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
V+S K Q +W RPL ++YA TD +LL + L A +
Sbjct: 123 NELLGVESSKKKQQSNWLKRPLLPLQLEYAATDVIHLLALRKVFAERLQAQNRWE----- 177
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + + K P +E +++ L QQ Y L ELY++RD A+ ++
Sbjct: 178 -WFEQMMRVVERKDYSPK-PKETFLSPKEQRDLAPFQQ-YILNELYRFRDEQAKYINKPH 234
Query: 489 GYVLPNHMLLQMAQS 503
V P ++ Q+ Q+
Sbjct: 235 YQVFPEQLVYQVMQT 249
>gi|399521199|ref|ZP_10761939.1| unnamed protein product [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110437|emb|CCH38498.1| unnamed protein product [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 373
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 124/256 (48%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+Q+S + Y++D L++ +D + +L N+VKV H
Sbjct: 27 VALDTEFMRVDTFYPIAGLLQVSAGEGAYLIDPLRI-DDWQPFAALLEAPNVVKVLHSCS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ + G +FDT A +L + S+ Y L++ D++ K DW R
Sbjct: 86 EDLEVFLRLTGSLPAPLFDTQLAAGYLNL-GFSMGYSRLVQALLDIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E ++YA D +L+ VY + ++ A K +L + + L E V
Sbjct: 145 PLSELQVRYAAEDVLHLVEVYRAL---MARLAPQKVEWILED--GAELVANLGRE--VAP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E+ + + + L + QQ+ LR L WR+R AR +++ +L H L +A++ P ++
Sbjct: 198 EDAWRDAKLAWKL-SRQQQAVLRALCAWREREARARNQPRNRILREHSLWPLARTQPDNL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ + P+TV++
Sbjct: 257 VALARIEDMHPKTVRQ 272
>gi|293410113|ref|ZP_06653689.1| ribonuclease D [Escherichia coli B354]
gi|291470581|gb|EFF13065.1| ribonuclease D [Escherichia coli B354]
Length = 371
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G LS
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LS 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA Q+L P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKA--QAL--PEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|89094008|ref|ZP_01166952.1| ribonuclease D [Neptuniibacter caesariensis]
gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92]
Length = 397
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 14/266 (5%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ IT EQ+++ + + IA+D E+ ++ L+Q++ Y++D L++ D
Sbjct: 20 IWITSAEQLSECCEKWRNLPLIALDTEFQRVDTFYPLPGLIQVADDQACYLIDPLEI-SD 78
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLL 368
L+ + D+ +VKV H A D++ K+ G V +FDT A + L +L
Sbjct: 79 FSSLSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALINWGFSMGLQRML 138
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ V +K +W RPL +YA D YL +Y+ + +L + H
Sbjct: 139 ESCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSRGH------- 191
Query: 429 STFTNSRNICKLKYEKPVFNE-EG--YMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
F C ++ +G Y F L + ALR+L WR++ AR ++
Sbjct: 192 --FHWVEQECSAMLADAAIDDVDGFSYYTRFTQMWRLPKHKLAALRDLTAWREQQARKRN 249
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
+L N +LQ+ + P+ + +
Sbjct: 250 VPRNRILRNQAILQIIEQWPKGLADL 275
>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
Length = 392
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 28/270 (10%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT ++ ++LK Q +A+D E+ +Y CL+Q + + ++D L DL
Sbjct: 4 ITTTAELEAFCAKLKGQPFVAVDTEFMRETTYWPKLCLIQAAAPSAEAVIDPLADDIDLS 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
++L D++I KVFH A D++ + + G +FDT A Q +AY L++
Sbjct: 64 CFLDILRDESIQKVFHAARQDVE-IFNNLGAMPKPLFDTQVAGMAAGFGEQ-IAYDALVR 121
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV-- 427
++ DK+ + DW RPL + + YA D +L +Y ++ L G+ V
Sbjct: 122 QMLKIEIDKSSRFTDWARRPLSDSQLTYALADVTHLAKLYPLLRQRLE--REGRLAWVTD 179
Query: 428 -LSTFTNSRNI-----CKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
++ T+ N K +P + Y+ ++R+ A WR+R A
Sbjct: 180 EMNDLTDPANYDVEPENAWKRLRPRRHTAKYLAVYRAVA--------------AWRERTA 225
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ +D+ G +L + + ++A P D +
Sbjct: 226 QLRDQPRGRILKDDAIDEIATQTPTDADAL 255
>gi|417095218|ref|ZP_11958232.1| ribonuclease III protein [Rhizobium etli CNPAF512]
gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512]
Length = 381
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + EL + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
E++ D ++KVFH A DI+ + L +FDT A C F S++Y
Sbjct: 61 APFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGF----GDSVSYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ +V DK+ + DW RPL + ++YA D +L VY +K +L G+
Sbjct: 117 QLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELD--REGRT- 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S T NI + + + ++ + + L Q+ L+ + WR+R AR ++
Sbjct: 174 ---SWLTEEMNILEARETYDMHPDDAWQRL--KMRLRKPQELAILKYVAAWREREARARN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIYEVAQQQPKDAEAL 254
>gi|239991576|ref|ZP_04712240.1| putative ribonuclease D [Streptomyces roseosporus NRRL 11379]
Length = 384
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 13/265 (4%)
Query: 251 MITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRE 308
M+T + + ++++ +A+D E + Y L+Q+ +VD +
Sbjct: 1 MVTSDDALARVIASFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPVGC-P 59
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L L + H A D+ L +D G+ +FDT A + PR L ++
Sbjct: 60 DLSGLGTALDGTEWI--LHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMV 116
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
++ +K DW RPLPEP ++YA D L+ + D ++ +L GK
Sbjct: 117 ENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELD--RQGKLEWAR 174
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F K + M H + +Q +REL+ RD++A+ +D S
Sbjct: 175 EEFDAIAAAPPAPPRKDPWRRTSGM-----HKVRRRRQMAVVRELWTTRDQVAQRRDVSP 229
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFA 513
G VL + +++ A ++P D+Q + A
Sbjct: 230 GKVLGDAAIVEAALALPVDVQALTA 254
>gi|385871742|gb|AFI90262.1| Ribonuclease D [Pectobacterium sp. SCC3193]
Length = 365
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ ++ ++ ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITSDIGLQQICAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + K H D++ FG DT FL P A L+
Sbjct: 64 APFQALLRDEQVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E YA D YLL + ++L A G N L
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPM--AIQLVTDTEAAGWMNAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C+ K + P + N ++ L + L+ L +WR R AR++D +
Sbjct: 182 ---ECLLLCQRKQDILAPALAYREFGNAWQ----LRGRNLACLQRLAEWRLRKARERDSA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ LLQ+A+ +P +
Sbjct: 235 VNFVVREENLLQVARCLPSSL 255
>gi|342179229|sp|B8EN54.2|RND_METSB RecName: Full=Ribonuclease D; Short=RNase D
Length = 399
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 15/267 (5%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + ++ L + +D E+ ++ C++Q+++ D+ VD L
Sbjct: 1 MSLITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYL 367
DL L E++ D +VKVFH A D++ + + +FDT A Q S L
Sbjct: 61 DLAPLFELMADPAVVKVFHAARQDLEIVWNLAKIIPAPLFDTQVAAMVCGFGDQVSYGDL 120
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
++ C V DK+ + DW RPL + YA D YL +Y ++ L K+
Sbjct: 121 VQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKL------KETGR 174
Query: 428 LSTFTNSRNICK--LKYEK-PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
L ++ + YE+ P E + N R L L E+ WR+ A+ +
Sbjct: 175 LGWLSDEMALLTSPATYEQHPDNAWERFRNRVRKPRDLG-----VLMEVAGWREAEAQAR 229
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D +L + +L+++A + PR +
Sbjct: 230 DVPRSRILKDDVLIELALAAPRSADAL 256
>gi|403526765|ref|YP_006661652.1| ribonuclease D [Arthrobacter sp. Rue61a]
gi|403229192|gb|AFR28614.1| putative ribonuclease D [Arthrobacter sp. Rue61a]
Length = 453
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 21/293 (7%)
Query: 223 LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA-IDLEYHNYR 281
D +VP + + + P++ +PL +I P + + + + A +D E +
Sbjct: 27 FDSHVP--EIIDLDTPREGVPL------VIDTPSGLERCAAAIAAGTGPAGVDAERASGF 78
Query: 282 SYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
Y L+QI +++D ++L+++N+ L + + + H A D+ L +
Sbjct: 79 RYGQRAFLVQIRREGAGTWLIDPEPF-DNLDIINDAL--RGVEWILHAASQDLPCLS-EL 134
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
G++ +FDT A + +PR LA +++ K DW RPLPEP ++YA
Sbjct: 135 GMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAADWSTRPLPEPWLRYAAL 194
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA 460
D + +L A GK F L P + + H
Sbjct: 195 DVE--VLAELREELIELLEADGKLEYAEQEFAGI-----LAAGLPAPRVDPWRKTSGLHQ 247
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ + +Q A+REL+ RD++AR +D + G ++P+ L+ A+++P + + A
Sbjct: 248 IRDRRQLAAVRELWLERDQLARKRDVAPGRLIPDSALVAAAKAMPTTVPQLLA 300
>gi|409436727|ref|ZP_11263897.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
gi|408751651|emb|CCM75051.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
Length = 381
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTADLEAACKELAKSEFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ + ++KVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 KPFFELMANPAVLKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVCGF----GDSVSYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ V DK+ + DW RPL E + YA D +L VY +K +L A G+
Sbjct: 117 QLVSRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLYLKAEL--AREGRS- 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S +I + + + ++ + + L Q+ L+ + WR+R AR ++
Sbjct: 174 ---SWLREEMDILEARDTYDMHPDDAWQRL--KMRLRKPQELAILKFVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIYEIAQQQPKDAEAL 254
>gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
Length = 385
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 32/326 (9%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIS----TRDKDYIVDTLKL 306
+ T PE + + +D E+ R+Y CL+Q++ D +VD L
Sbjct: 4 LTTTPE-LAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDPLAE 62
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
+LE L + D ++VKVFH A D++ D G++ +FDT A Q + Y
Sbjct: 63 GLELEPLYTLFRDTSVVKVFHAARQDLEIFWVDAGVFPEPLFDTQVAAMVCGFGEQ-VGY 121
Query: 367 --LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
L++ C DKT + DW RPL + YA D +L +Y+ + DL A G+
Sbjct: 122 ETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADL--AKTGRS 179
Query: 425 NLV---LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY--ALRELYKWRDR 479
+ V L T T+ Y+ + EE + I N K+ +REL ++R+
Sbjct: 180 HWVAEELRTLTDPAT-----YD--IRPEEAWRRIKTR----TNSGKFLAVVRELAQFRES 228
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
A+D + V + L+++A + PR + + + K + D IL A +
Sbjct: 229 YAQDNNVPRNRVFKDDALIELASTKPRTHADLGGSRLLLREARKGAIAD---GILAAVGR 285
Query: 540 SLTKPVEKLQPSLDGMKKKQQQQVSP 565
+ P EK+ + +G ++ QV+P
Sbjct: 286 GIDCPPEKMPKATNG---RENLQVNP 308
>gi|300938850|ref|ZP_07153558.1| ribonuclease D [Escherichia coli MS 21-1]
gi|386624429|ref|YP_006144157.1| ribonuclease D [Escherichia coli O7:K1 str. CE10]
gi|422333080|ref|ZP_16414092.1| ribonuclease D [Escherichia coli 4_1_47FAA]
gi|422828889|ref|ZP_16877058.1| ribonuclease D [Escherichia coli B093]
gi|432770768|ref|ZP_20005112.1| ribonuclease D [Escherichia coli KTE50]
gi|432961822|ref|ZP_20151612.1| ribonuclease D [Escherichia coli KTE202]
gi|433063196|ref|ZP_20250129.1| ribonuclease D [Escherichia coli KTE125]
gi|300456240|gb|EFK19733.1| ribonuclease D [Escherichia coli MS 21-1]
gi|349738167|gb|AEQ12873.1| ribonuclease D [Escherichia coli O7:K1 str. CE10]
gi|371611990|gb|EHO00508.1| ribonuclease D [Escherichia coli B093]
gi|373245974|gb|EHP65437.1| ribonuclease D [Escherichia coli 4_1_47FAA]
gi|431315968|gb|ELG03867.1| ribonuclease D [Escherichia coli KTE50]
gi|431474778|gb|ELH54584.1| ribonuclease D [Escherichia coli KTE202]
gi|431583030|gb|ELI55040.1| ribonuclease D [Escherichia coli KTE125]
Length = 371
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-SDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|389694811|ref|ZP_10182905.1| ribonuclease D [Microvirga sp. WSM3557]
gi|388588197|gb|EIM28490.1| ribonuclease D [Microvirga sp. WSM3557]
Length = 386
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 23/270 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD--KDYIVDTLKLRE 308
+IT + + + L Q + +D E+ +Y CL+Q++ D Y++D L
Sbjct: 3 LITSTDALAAACNRLSQHPFVTVDTEFLRETTYYPKLCLIQMAGPDPADAYLIDPLAEGI 62
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
LE ++ + ++VKVFH A D++ + G+ + +FDT A C + S++
Sbjct: 63 SLEPFMTLMANPDVVKVFHSARQDLEIVWNLGGIVPIPLFDTQVAAMVCGY----GDSVS 118
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L DK+ + DW RPL + + YA +D +L+ VY+ + L +
Sbjct: 119 YEQLANDLAKAKIDKSSRFTDWSRRPLTDAQLTYALSDVTHLVQVYEALMAQL------Q 172
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA--LLNNQQKYALRELYKWRDRIA 481
+N L I P + N +R A L ++ L E+ WR+R A
Sbjct: 173 KNGRLEWLAEEMAILT----SPETYQADPGNAWRRLAGRLRKPREIAVLMEVSAWREREA 228
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ +D G +L + ++ +A S PR ++ +
Sbjct: 229 QARDVPRGRILKDDAVIDIATSAPRSVEAL 258
>gi|317125038|ref|YP_004099150.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
gi|315589126|gb|ADU48423.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
Length = 418
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 10/224 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
I +D E + Y L+Q+ + ++ DL L+ + D + H A
Sbjct: 51 IGVDAERASGYRYGQRAYLVQVRRQGAGTVLLDPVAVPDLSPLDRAIGDAEWI--LHAAT 108
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390
D+ L + GL +FDT + +PR L +++HY + K DW RPL
Sbjct: 109 HDLVCL-AEVGLQPRVLFDTELGGRLAGLPRVGLGAMVEHYLGLQLAKEHSAVDWSIRPL 167
Query: 391 PEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE 450
PEP ++YA D L+ + + DL GK F + L++ P +
Sbjct: 168 PEPWLRYAALDVEVLVDLRHAVHADLE--RQGKAGWAAEEFQS-----LLQFTGPEPRVD 220
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
+ H + + +REL+ WRD +AR +D S G ++P+
Sbjct: 221 PWRRTSGIHRIRARRGTAIVRELWVWRDELARQRDVSPGRIVPD 264
>gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1]
gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1]
Length = 453
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 21/293 (7%)
Query: 223 LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA-IDLEYHNYR 281
D +VP + + + P++ +PL +I P + + + + A +D E +
Sbjct: 27 FDSHVP--EIIDLDTPREGVPL------VIDTPSGLERCAAAIAAGTGPAGVDAERASGF 78
Query: 282 SYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF 340
Y L+QI +++D ++L+++N+ L + + + H A D+ L +
Sbjct: 79 RYGQRAFLVQIRREGAGTWLIDPEPF-DNLDIINDAL--RGVEWILHAASQDLPCLS-EL 134
Query: 341 GLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 400
G++ +FDT A + +PR LA +++ K DW RPLPEP ++YA
Sbjct: 135 GMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAADWSTRPLPEPWLRYAAL 194
Query: 401 DTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA 460
D + +L A GK F L P + + H
Sbjct: 195 DVE--VLAELREELIELLEADGKLEYAEQEFAG-----ILAAGLPAPRVDPWRKTSGLHQ 247
Query: 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ + +Q A+REL+ RD++AR +D + G ++P+ L+ A+++P + + A
Sbjct: 248 IRDRRQLAAVRELWLERDQLARKRDVAPGRLIPDSALVAAAKAMPTTVPQLLA 300
>gi|432793007|ref|ZP_20027092.1| ribonuclease D [Escherichia coli KTE78]
gi|432798965|ref|ZP_20032988.1| ribonuclease D [Escherichia coli KTE79]
gi|431339751|gb|ELG26805.1| ribonuclease D [Escherichia coli KTE78]
gi|431343832|gb|ELG30788.1| ribonuclease D [Escherichia coli KTE79]
Length = 371
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-SDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNIFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|395798789|ref|ZP_10478072.1| ribonuclease D [Pseudomonas sp. Ag1]
gi|395337023|gb|EJF68881.1| ribonuclease D [Pseudomonas sp. Ag1]
Length = 377
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 130/278 (46%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 ICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGARAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + ++KV H D++ L + G V +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D++ K DW RPL E I YA D +L VY ++ LS K VL
Sbjct: 126 AVLDIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPKLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR++ AR +D
Sbjct: 183 D--GAELVANLRREVDPYE------VYRDAKLAWKLSRAQLAVLRELCAWREQQARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A+S P ++ + + P+TV++
Sbjct: 235 PRNRIIREHSLWPLAKSQPDNLAALGKIEDMHPRTVRQ 272
>gi|432449816|ref|ZP_19692088.1| ribonuclease D [Escherichia coli KTE193]
gi|433033541|ref|ZP_20221273.1| ribonuclease D [Escherichia coli KTE112]
gi|430981392|gb|ELC98120.1| ribonuclease D [Escherichia coli KTE193]
gi|431553531|gb|ELI27457.1| ribonuclease D [Escherichia coli KTE112]
Length = 371
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRVRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|418054044|ref|ZP_12692100.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
gi|353211669|gb|EHB77069.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
Length = 384
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 25/269 (9%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT ++ L L + +A+D E+ +++ CL+Q++ + + IVD L DL
Sbjct: 4 ITTTSELAALCETLSRSDYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPGIDLA 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY-- 366
+++ D + VKVFH A DI+ + G+ +FD+ A C F S++Y
Sbjct: 64 PFYQLMADTSTVKVFHAARQDIEIVFLKSGVVPTPVFDSQVAAMVCGF----GDSISYVN 119
Query: 367 LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK--LDLSAAAHGKQ 424
L+K D DK+ + DW RPL + YA D YL VY ++ LD + Q
Sbjct: 120 LVKKTTGTDLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYVRLRQTLDKTERTPWLQ 179
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY--ALRELYKWRDRIAR 482
++ TN P + N ++ L +K L EL WR+R+A+
Sbjct: 180 E-EMAVLTN-----------PATYDTSPENAWQRLKLRVKGRKALGVLVELAAWRERLAQ 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
D G VL + L +A +P + +
Sbjct: 228 SLDVPRGRVLRDDALYDIANQMPVSTEAL 256
>gi|421079643|ref|ZP_15540581.1| Ribonuclease D [Pectobacterium wasabiae CFBP 3304]
gi|401705729|gb|EJS95914.1| Ribonuclease D [Pectobacterium wasabiae CFBP 3304]
Length = 374
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ ++ ++ ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITSDIGLQQICAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + K H D++ FG DT FL P A L+
Sbjct: 64 APFQALLRDEQVTKFLHAGSEDLEVFLNTFGTLPTPFVDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E YA D YLL + ++L A G N L
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPM--AIQLVTDTEAAGWMNAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C+ K + P + N ++ L + L+ L +WR R AR++D +
Sbjct: 182 ---ECLLLCQRKQDILAPALAYREFGNAWQ----LRGRSLACLQRLAEWRLRKARERDSA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ LLQ+A+ +P +
Sbjct: 235 VNFVVREENLLQVARCLPSSL 255
>gi|227355430|ref|ZP_03839826.1| ribonuclease D [Proteus mirabilis ATCC 29906]
gi|227164417|gb|EEI49301.1| ribonuclease D [Proteus mirabilis ATCC 29906]
Length = 399
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 12/257 (4%)
Query: 253 TEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV 312
T E V + SE+ Q IA+D E+ R+Y + L+Q+ + ++D L + E
Sbjct: 37 TALEDVCKAASEVSQ---IALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLTITEWTPF 93
Query: 313 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHY 371
+ E+LT+ ++K H D++ FG M DT FL P A L++ Y
Sbjct: 94 V-ELLTNPAVLKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFLGYPISCGFATLVEKY 152
Query: 372 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
+ DK+ DW RPL E QYA D YLL L A ++ +
Sbjct: 153 EHIALDKSESRTDWLARPLTEKQCQYASGDVFYLL------PLAKKLIAQAQEAGYMDAI 206
Query: 432 TNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYV 491
+ + + ++ V E Y +I + L QQ L+ L +WR AR +D + +V
Sbjct: 207 VDECEMIAERRQETVSPELAYRDIGNAWQ-LRGQQLACLKMLAEWRLNQARARDMALNFV 265
Query: 492 LPNHMLLQMAQSIPRDI 508
+ L +A+ +P +
Sbjct: 266 VREEHLWSVARYLPTSL 282
>gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3]
gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3]
Length = 427
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 12/243 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A D E + Y L+QI R ++D + L EDL V+ + + + V H A
Sbjct: 46 VAFDAERASGYRYSQRAYLVQIRRRGTGSLLLDPIAL-EDLSVIQDAV--GGVEWVLHAA 102
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + L R L +++ +K DW RP
Sbjct: 103 SQDLPCL-SELGLRPSLLFDTELAGRLLGYERVGLGIMVERVLGYGLEKGHSAADWSTRP 161
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPEP ++YA D L+ + D ++ +L +QN + I +P
Sbjct: 162 LPEPWLRYAALDVELLVELRDALEAELI-----EQNKIEFARQEFAAIVAAPPREP--RA 214
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E + H + +Q A+R ++ RDR+AR +D + G VLP+ ++ + P D
Sbjct: 215 EPWRRTSGIHRARSRRQLAAVRAMWTARDRLARTRDVAPGRVLPDSAIMDAVLNAPTDAA 274
Query: 510 GIF 512
+
Sbjct: 275 ALV 277
>gi|374985846|ref|YP_004961341.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
Length = 424
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 19/282 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P + +P+ + ++++ + +A+D E + Y L+Q+
Sbjct: 33 EPREGIP------PVTADPDALAEVITAFAEGHGPVAVDAERASGYRYGQRAYLVQLRRA 86
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L + + D V H A D+ L +D G+ +FDT A
Sbjct: 87 GAGTALIDPVGC-PDLSGLGDAIADAEWV--LHAATQDLPCL-RDIGMLPGRLFDTELAG 142
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ R L ++++ +K DW RPLP+P + YA D L+ + D ++
Sbjct: 143 RLAGFARVGLGAMVENILGYALEKGHSAVDWSTRPLPDPWLHYAALDVELLVDLRDALEE 202
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L+ GK N F K + M H + +Q +REL+
Sbjct: 203 ELT--RQGKLNWAHQEFAAIAAAPPAPPRKDPWRRTSGM-----HKVRRRRQMAVVRELW 255
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCN 516
RD+IA+ +D S G VL + +++ A ++P + + A
Sbjct: 256 TARDKIAQRRDVSPGKVLGDAAIVEAALALPTTARALGALGG 297
>gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163]
gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163]
Length = 374
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ ++ ++ ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITSDIGLQQICAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + K H D++ FG DT FL P A L+
Sbjct: 64 APFQALLRDEQVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E YA D YLL + ++L A G N L
Sbjct: 124 DYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPM--AIQLVTDTEAAGWMNAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C+ K + P + N ++ L + L+ L +WR R AR++D +
Sbjct: 182 ---ECLLLCQRKQDILAPALAYREFGNAWQ----LRGRNLACLQRLAEWRLRKARERDSA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ LLQ+A+ +P +
Sbjct: 235 VNFVVREENLLQVARCLPSSL 255
>gi|253989912|ref|YP_003041268.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica]
gi|211638250|emb|CAR66874.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781362|emb|CAQ84524.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica]
Length = 375
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 9/259 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT Q+ Q+ K+ +IA+D E+ R+Y L+Q+ ++ ++D L + +
Sbjct: 5 LITTDAQLQQVCERAKEYAKIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNI-TNW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ E++T+ I+K H D++ F M DT F+ P A L+
Sbjct: 64 QPFRELITNPQILKFLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFIGHPLSCGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V+ DK+ DW RPL E +YA D +YLL + D + + A + + +
Sbjct: 124 EYIHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILITATTQAGYMEAAIGEC 183
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ R + + E + L QQ L+ L WR AR+++ +
Sbjct: 184 ELISQRR-------REILAPECAYKQIGNICQLRPQQLACLKMLAAWRLNQARERNLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDI 508
+V+ L Q+A+ +P +
Sbjct: 237 FVIREENLWQVARYMPTSL 255
>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
Length = 405
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 15/267 (5%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + ++ L + +D E+ ++ C++Q+++ D+ VD L
Sbjct: 7 MSLITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGL 66
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYL 367
DL L E++ D +VKVFH A D++ + + +FDT A Q S L
Sbjct: 67 DLAPLFELMADPAVVKVFHAARQDLEIVWNLAKIIPAPLFDTQVAAMVCGFGDQVSYGDL 126
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
++ C V DK+ + DW RPL + YA D YL +Y ++ L K+
Sbjct: 127 VQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKL------KETGR 180
Query: 428 LSTFTNSRNICK--LKYEK-PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
L ++ + YE+ P E + N R L L E+ WR+ A+ +
Sbjct: 181 LGWLSDEMALLTSPATYEQHPDNAWERFRNRVRKPRDLG-----VLMEVAGWREAEAQAR 235
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D +L + +L+++A + PR +
Sbjct: 236 DVPRSRILKDDVLIELALAAPRSADAL 262
>gi|145594075|ref|YP_001158372.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
gi|145303412|gb|ABP53994.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
Length = 451
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 11/258 (4%)
Query: 252 ITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRED 309
+T P ++ ++V+ Q +A+D E + Y L+Q+ ++D L L E
Sbjct: 64 VTTPVELAEVVARFSQGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLPLPE- 122
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L L+E + + V H A D+ L + GL +FDT A + R LA L +
Sbjct: 123 LTSLDEAIGEAEWV--LHAASQDLYCL-AELGLRPRRLFDTELAARLAGFERVGLAALTE 179
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ +K DW RPLPE + YA D L+ + D + +L+ +Q
Sbjct: 180 NLLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALDAELT-----RQGKAEW 234
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + P E + H + + + +R L+ RD+IA +D + G
Sbjct: 235 AAEEFAALVRNGARPPRVRAEPWRRTSGIHRVRGARAQARVRSLWYARDQIAARRDAAPG 294
Query: 490 YVLPNHMLLQMAQSIPRD 507
VLP+ ++ A+ PRD
Sbjct: 295 RVLPDSAIVAAAELDPRD 312
>gi|333900086|ref|YP_004473959.1| ribonuclease D [Pseudomonas fulva 12-X]
gi|333115351|gb|AEF21865.1| ribonuclease D [Pseudomonas fulva 12-X]
Length = 377
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 12/273 (4%)
Query: 266 KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 325
++Q +A+D E+ ++ L+Q+S ++ Y++D L L D +L D +VKV
Sbjct: 22 RKQPFVALDTEFMRVDTFYPIAGLLQVSEGERAYLIDPL-LIGDWAPFAALLEDPQVVKV 80
Query: 326 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLF 383
H D++ + G +FD+ A +L + S+ Y L++ D++ K
Sbjct: 81 VHACSEDLEVFLRLTGSLPAPLFDSQLAAGYLNL-GFSMGYSRLVQAVLDIELPKGETRS 139
Query: 384 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE 443
DW RPL E + YA D +L +Y ++ LSA K VL + L+ E
Sbjct: 140 DWLQRPLSETQVSYAAEDVVHLAELYRRLQARLSAE---KNAWVLED--GAELAAGLRRE 194
Query: 444 KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQS 503
P EE Y + + L + Q LR L WR+R AR +++ ++ H L +A+
Sbjct: 195 TP--PEEAYKDAKLAWKL-SRAQLAVLRALCTWRERQARARNQPRNRIIREHSLWPLARH 251
Query: 504 IPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
P D+ + P+TV++ I +I +A
Sbjct: 252 QPSDLVSLARIEEMHPKTVRQDGETILQLIREA 284
>gi|386010914|ref|YP_005929191.1| Rnd [Pseudomonas putida BIRD-1]
gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1]
Length = 377
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+QI + +++D L L + + L ++L D +VKV H
Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL-LIGNWQPLADLLEDSGVVKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L ++ ++ LS K VL + + L+ E V
Sbjct: 145 PLSETQVSYAAEDAVHLAELFSVLRPRLS---DDKYAWVLED--GAELVAALRRE--VEP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E Y ++ + L QQ LREL WR+R AR++D +L H L MA+S P ++
Sbjct: 198 ESLYRDVKLAWKL-APQQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ P+T+++
Sbjct: 257 SALAKIDEMHPRTIRQ 272
Score = 40.0 bits (92), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ LREL WR+R AR++D +L H L MA+S P ++ + P+T+++
Sbjct: 213 QQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQ 272
>gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6]
gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6]
Length = 377
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 ICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +++KV H D++ L + G V +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPSVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D+D K DW RPL E I YA D +L VY ++ LS K VL
Sbjct: 126 AVLDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPKLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR++ AR +D
Sbjct: 183 --DGAELVANLRREVDPY------EVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A++ P ++ + + P+TV++
Sbjct: 235 PRNRIVREHSLWPLAKTQPDNLAALGKIEDMHPRTVRQ 272
>gi|414173189|ref|ZP_11427952.1| ribonuclease D [Afipia broomeae ATCC 49717]
gi|410891841|gb|EKS39637.1| ribonuclease D [Afipia broomeae ATCC 49717]
Length = 382
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 3/168 (1%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT +++T + + L + + I +D E+ +Y C++Q+++ D+ +VD L DL
Sbjct: 3 IITTTDELTAVCNRLAKHRVITVDTEFLRETTYYPLLCVVQLASADEAAVVDALAEGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ +++ ++N++KVFH A DI+ + G+ +FDT A L S+AY L+
Sbjct: 63 KPFFDLMANENVLKVFHAARQDIEIIFHRAGIIPHPVFDTQVAAMVLGYG-DSIAYDQLV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+ DKT + DW +RPL + I YA D +L V+ + DL
Sbjct: 122 ERITGHRPDKTHRFTDWSNRPLTQDQITYAVADVTHLRDVFAALDADL 169
>gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
Length = 385
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 43/281 (15%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + VS L + + +D E+ ++ CL+Q+++ + +VD L
Sbjct: 1 MHLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPNHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ +VKVFH A DI+ + L +FD+ A C F +++
Sbjct: 61 DLAPFFSLMADEKVVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL E + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELE--KEGR 174
Query: 424 QNLV---LSTFTNSRNI----------CKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL 470
V ++ T+ K + KP+ ++ +
Sbjct: 175 SEWVNEEMAVLTSRETYDLHPDDAWRRVKARVRKPI-------------------EQAIV 215
Query: 471 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ + WR+R AR+++ G ++ + + ++AQ PRD + +
Sbjct: 216 QAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|195937492|ref|ZP_03082874.1| ribonuclease D [Escherichia coli O157:H7 str. EC4024]
gi|261227700|ref|ZP_05941981.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK2000]
gi|261258135|ref|ZP_05950668.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK966]
gi|293405300|ref|ZP_06649292.1| ribonuclease D [Escherichia coli FVEC1412]
gi|298380942|ref|ZP_06990541.1| ribonuclease D [Escherichia coli FVEC1302]
gi|300816311|ref|ZP_07096533.1| ribonuclease D [Escherichia coli MS 107-1]
gi|300823140|ref|ZP_07103273.1| ribonuclease D [Escherichia coli MS 119-7]
gi|300899043|ref|ZP_07117330.1| ribonuclease D [Escherichia coli MS 198-1]
gi|300917626|ref|ZP_07134277.1| ribonuclease D [Escherichia coli MS 115-1]
gi|300924870|ref|ZP_07140803.1| ribonuclease D [Escherichia coli MS 182-1]
gi|307314118|ref|ZP_07593730.1| ribonuclease D [Escherichia coli W]
gi|309794180|ref|ZP_07688604.1| ribonuclease D [Escherichia coli MS 145-7]
gi|331663292|ref|ZP_08364202.1| ribonuclease D [Escherichia coli TA143]
gi|331668492|ref|ZP_08369340.1| ribonuclease D [Escherichia coli TA271]
gi|331673338|ref|ZP_08374106.1| ribonuclease D [Escherichia coli TA280]
gi|331677680|ref|ZP_08378355.1| ribonuclease D [Escherichia coli H591]
gi|378712757|ref|YP_005277650.1| ribonuclease D [Escherichia coli KO11FL]
gi|386609190|ref|YP_006124676.1| ribonuclease D [Escherichia coli W]
gi|386701227|ref|YP_006165064.1| ribonuclease D [Escherichia coli KO11FL]
gi|386709663|ref|YP_006173384.1| ribonuclease D [Escherichia coli W]
gi|415805201|ref|ZP_11501410.1| ribonuclease D [Escherichia coli E128010]
gi|415825944|ref|ZP_11513300.1| ribonuclease D [Escherichia coli OK1357]
gi|415873593|ref|ZP_11540813.1| ribonuclease D [Escherichia coli MS 79-10]
gi|416312312|ref|ZP_11657513.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044]
gi|416323027|ref|ZP_11664636.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212]
gi|416327282|ref|ZP_11667289.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125]
gi|416346825|ref|ZP_11679916.1| Ribonuclease D [Escherichia coli EC4100B]
gi|416773889|ref|ZP_11873883.1| ribonuclease D [Escherichia coli O157:H7 str. G5101]
gi|416785891|ref|ZP_11878787.1| ribonuclease D [Escherichia coli O157:H- str. 493-89]
gi|416796869|ref|ZP_11883703.1| ribonuclease D [Escherichia coli O157:H- str. H 2687]
gi|416808314|ref|ZP_11888359.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97]
gi|416827568|ref|ZP_11897584.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905]
gi|416828948|ref|ZP_11898242.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61]
gi|417134104|ref|ZP_11978889.1| ribonuclease D [Escherichia coli 5.0588]
gi|417138081|ref|ZP_11981814.1| ribonuclease D [Escherichia coli 97.0259]
gi|417155611|ref|ZP_11993740.1| ribonuclease D [Escherichia coli 96.0497]
gi|417172454|ref|ZP_12002487.1| ribonuclease D [Escherichia coli 3.2608]
gi|417187691|ref|ZP_12012357.1| ribonuclease D [Escherichia coli 93.0624]
gi|417220756|ref|ZP_12024196.1| ribonuclease D [Escherichia coli 96.154]
gi|417252046|ref|ZP_12043809.1| ribonuclease D [Escherichia coli 4.0967]
gi|417308267|ref|ZP_12095120.1| Ribonuclease D [Escherichia coli PCN033]
gi|417581280|ref|ZP_12232085.1| ribonuclease D [Escherichia coli STEC_B2F1]
gi|417586679|ref|ZP_12237451.1| ribonuclease D [Escherichia coli STEC_C165-02]
gi|417596931|ref|ZP_12247579.1| ribonuclease D [Escherichia coli 3030-1]
gi|417602393|ref|ZP_12252963.1| ribonuclease D [Escherichia coli STEC_94C]
gi|417608370|ref|ZP_12258876.1| ribonuclease D [Escherichia coli STEC_DG131-3]
gi|417628973|ref|ZP_12279213.1| ribonuclease D [Escherichia coli STEC_MHI813]
gi|417865319|ref|ZP_12510363.1| hypothetical protein C22711_2251 [Escherichia coli O104:H4 str.
C227-11]
gi|418043997|ref|ZP_12682146.1| ribonuclease D [Escherichia coli W26]
gi|419045324|ref|ZP_13592270.1| ribonuclease D [Escherichia coli DEC3A]
gi|419057338|ref|ZP_13604153.1| ribonuclease D [Escherichia coli DEC3C]
gi|419062717|ref|ZP_13609456.1| ribonuclease D [Escherichia coli DEC3D]
gi|419069620|ref|ZP_13615256.1| ribonuclease D [Escherichia coli DEC3E]
gi|419075417|ref|ZP_13620949.1| ribonuclease D [Escherichia coli DEC3F]
gi|419080854|ref|ZP_13626311.1| ribonuclease D [Escherichia coli DEC4A]
gi|419086488|ref|ZP_13631858.1| ribonuclease D [Escherichia coli DEC4B]
gi|419092627|ref|ZP_13637920.1| ribonuclease D [Escherichia coli DEC4C]
gi|419098171|ref|ZP_13643384.1| ribonuclease D [Escherichia coli DEC4D]
gi|419104112|ref|ZP_13649253.1| ribonuclease D [Escherichia coli DEC4E]
gi|419109664|ref|ZP_13654731.1| ribonuclease D [Escherichia coli DEC4F]
gi|419120618|ref|ZP_13665584.1| ribonuclease D [Escherichia coli DEC5B]
gi|419126130|ref|ZP_13671019.1| ribonuclease D [Escherichia coli DEC5C]
gi|419131736|ref|ZP_13676577.1| ribonuclease D [Escherichia coli DEC5D]
gi|419136560|ref|ZP_13681361.1| ribonuclease D [Escherichia coli DEC5E]
gi|419278179|ref|ZP_13820433.1| ribonuclease D [Escherichia coli DEC10E]
gi|419289697|ref|ZP_13831792.1| ribonuclease D [Escherichia coli DEC11A]
gi|419295031|ref|ZP_13837077.1| ribonuclease D [Escherichia coli DEC11B]
gi|419300350|ref|ZP_13842351.1| ribonuclease D [Escherichia coli DEC11C]
gi|419306446|ref|ZP_13848350.1| ribonuclease D [Escherichia coli DEC11D]
gi|419311471|ref|ZP_13853338.1| ribonuclease D [Escherichia coli DEC11E]
gi|419316828|ref|ZP_13858640.1| ribonuclease D [Escherichia coli DEC12A]
gi|419322957|ref|ZP_13864663.1| ribonuclease D [Escherichia coli DEC12B]
gi|419328948|ref|ZP_13870563.1| ribonuclease D [Escherichia coli DEC12C]
gi|419334496|ref|ZP_13876040.1| ribonuclease D [Escherichia coli DEC12D]
gi|419345418|ref|ZP_13886796.1| ribonuclease D [Escherichia coli DEC13A]
gi|419355234|ref|ZP_13896496.1| ribonuclease D [Escherichia coli DEC13C]
gi|419360258|ref|ZP_13901479.1| ribonuclease D [Escherichia coli DEC13D]
gi|419365366|ref|ZP_13906532.1| ribonuclease D [Escherichia coli DEC13E]
gi|419370206|ref|ZP_13911327.1| ribonuclease D [Escherichia coli DEC14A]
gi|419380992|ref|ZP_13921948.1| ribonuclease D [Escherichia coli DEC14C]
gi|419386264|ref|ZP_13927145.1| ribonuclease D [Escherichia coli DEC14D]
gi|419806842|ref|ZP_14331931.1| ribonuclease D [Escherichia coli AI27]
gi|419923625|ref|ZP_14441562.1| ribonuclease D [Escherichia coli 541-15]
gi|419930505|ref|ZP_14448104.1| ribonuclease D [Escherichia coli 541-1]
gi|419932356|ref|ZP_14449674.1| ribonuclease D [Escherichia coli 576-1]
gi|419950081|ref|ZP_14466305.1| ribonuclease D [Escherichia coli CUMT8]
gi|420275564|ref|ZP_14777865.1| ribonuclease D [Escherichia coli PA40]
gi|420280809|ref|ZP_14783056.1| ribonuclease D [Escherichia coli TW06591]
gi|420286857|ref|ZP_14789054.1| ribonuclease D [Escherichia coli TW10246]
gi|420292545|ref|ZP_14794677.1| ribonuclease D [Escherichia coli TW11039]
gi|420304113|ref|ZP_14806120.1| ribonuclease D [Escherichia coli TW10119]
gi|420309640|ref|ZP_14811584.1| ribonuclease D [Escherichia coli EC1738]
gi|420315379|ref|ZP_14817262.1| ribonuclease D [Escherichia coli EC1734]
gi|420335860|ref|ZP_14837460.1| ribonuclease D [Shigella flexneri K-315]
gi|420391484|ref|ZP_14890741.1| ribonuclease D [Escherichia coli EPEC C342-62]
gi|421774163|ref|ZP_16210776.1| ribonuclease D [Escherichia coli AD30]
gi|421812481|ref|ZP_16248228.1| ribonuclease D [Escherichia coli 8.0416]
gi|421818514|ref|ZP_16254026.1| ribonuclease D [Escherichia coli 10.0821]
gi|421824135|ref|ZP_16259529.1| ribonuclease D [Escherichia coli FRIK920]
gi|421831023|ref|ZP_16266321.1| ribonuclease D [Escherichia coli PA7]
gi|422353949|ref|ZP_16434696.1| ribonuclease D [Escherichia coli MS 117-3]
gi|422761050|ref|ZP_16814809.1| ribonuclease D [Escherichia coli E1167]
gi|422774296|ref|ZP_16827952.1| ribonuclease D [Escherichia coli H120]
gi|422956836|ref|ZP_16969310.1| ribonuclease D [Escherichia coli H494]
gi|422973414|ref|ZP_16975798.1| ribonuclease D [Escherichia coli TA124]
gi|422987855|ref|ZP_16978631.1| ribonuclease D [Escherichia coli O104:H4 str. C227-11]
gi|422994736|ref|ZP_16985500.1| ribonuclease D [Escherichia coli O104:H4 str. C236-11]
gi|422999876|ref|ZP_16990630.1| ribonuclease D [Escherichia coli O104:H4 str. 09-7901]
gi|423003487|ref|ZP_16994233.1| ribonuclease D [Escherichia coli O104:H4 str. 04-8351]
gi|423010052|ref|ZP_17000790.1| ribonuclease D [Escherichia coli O104:H4 str. 11-3677]
gi|423019279|ref|ZP_17009988.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4404]
gi|423024445|ref|ZP_17015142.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4522]
gi|423030262|ref|ZP_17020950.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4623]
gi|423038094|ref|ZP_17028768.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043214|ref|ZP_17033881.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423044956|ref|ZP_17035617.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423053489|ref|ZP_17042297.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060453|ref|ZP_17049249.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423705787|ref|ZP_17680170.1| ribonuclease D [Escherichia coli B799]
gi|424077639|ref|ZP_17814693.1| ribonuclease D [Escherichia coli FDA505]
gi|424096961|ref|ZP_17832381.1| ribonuclease D [Escherichia coli FRIK1985]
gi|424103299|ref|ZP_17838175.1| ribonuclease D [Escherichia coli FRIK1990]
gi|424110021|ref|ZP_17844340.1| ribonuclease D [Escherichia coli 93-001]
gi|424115728|ref|ZP_17849659.1| ribonuclease D [Escherichia coli PA3]
gi|424122096|ref|ZP_17855509.1| ribonuclease D [Escherichia coli PA5]
gi|424128224|ref|ZP_17861200.1| ribonuclease D [Escherichia coli PA9]
gi|424134415|ref|ZP_17866961.1| ribonuclease D [Escherichia coli PA10]
gi|424141052|ref|ZP_17873030.1| ribonuclease D [Escherichia coli PA14]
gi|424147479|ref|ZP_17878940.1| ribonuclease D [Escherichia coli PA15]
gi|424153413|ref|ZP_17884428.1| ribonuclease D [Escherichia coli PA24]
gi|424235907|ref|ZP_17889880.1| ribonuclease D [Escherichia coli PA25]
gi|424313494|ref|ZP_17895787.1| ribonuclease D [Escherichia coli PA28]
gi|424449836|ref|ZP_17901610.1| ribonuclease D [Escherichia coli PA32]
gi|424456004|ref|ZP_17907232.1| ribonuclease D [Escherichia coli PA33]
gi|424468709|ref|ZP_17918623.1| ribonuclease D [Escherichia coli PA41]
gi|424475293|ref|ZP_17924702.1| ribonuclease D [Escherichia coli PA42]
gi|424493616|ref|ZP_17941527.1| ribonuclease D [Escherichia coli TW09195]
gi|424500480|ref|ZP_17947480.1| ribonuclease D [Escherichia coli EC4203]
gi|424506634|ref|ZP_17953147.1| ribonuclease D [Escherichia coli EC4196]
gi|424514121|ref|ZP_17958900.1| ribonuclease D [Escherichia coli TW14313]
gi|424532483|ref|ZP_17975888.1| ribonuclease D [Escherichia coli EC4422]
gi|424538487|ref|ZP_17981504.1| ribonuclease D [Escherichia coli EC4013]
gi|424550718|ref|ZP_17992665.1| ribonuclease D [Escherichia coli EC4439]
gi|424556966|ref|ZP_17998443.1| ribonuclease D [Escherichia coli EC4436]
gi|424563313|ref|ZP_18004371.1| ribonuclease D [Escherichia coli EC4437]
gi|424569384|ref|ZP_18010035.1| ribonuclease D [Escherichia coli EC4448]
gi|424575513|ref|ZP_18015686.1| ribonuclease D [Escherichia coli EC1845]
gi|424581370|ref|ZP_18021092.1| ribonuclease D [Escherichia coli EC1863]
gi|425098218|ref|ZP_18501012.1| ribonuclease D [Escherichia coli 3.4870]
gi|425104398|ref|ZP_18506763.1| ribonuclease D [Escherichia coli 5.2239]
gi|425110227|ref|ZP_18512224.1| ribonuclease D [Escherichia coli 6.0172]
gi|425126016|ref|ZP_18527280.1| ribonuclease D [Escherichia coli 8.0586]
gi|425131874|ref|ZP_18532777.1| ribonuclease D [Escherichia coli 8.2524]
gi|425138241|ref|ZP_18538710.1| ribonuclease D [Escherichia coli 10.0833]
gi|425144198|ref|ZP_18544259.1| ribonuclease D [Escherichia coli 10.0869]
gi|425150267|ref|ZP_18549948.1| ribonuclease D [Escherichia coli 88.0221]
gi|425156111|ref|ZP_18555438.1| ribonuclease D [Escherichia coli PA34]
gi|425162623|ref|ZP_18561562.1| ribonuclease D [Escherichia coli FDA506]
gi|425174386|ref|ZP_18572557.1| ribonuclease D [Escherichia coli FDA504]
gi|425180329|ref|ZP_18578109.1| ribonuclease D [Escherichia coli FRIK1999]
gi|425186564|ref|ZP_18583923.1| ribonuclease D [Escherichia coli FRIK1997]
gi|425193432|ref|ZP_18590281.1| ribonuclease D [Escherichia coli NE1487]
gi|425199823|ref|ZP_18596141.1| ribonuclease D [Escherichia coli NE037]
gi|425206272|ref|ZP_18602152.1| ribonuclease D [Escherichia coli FRIK2001]
gi|425218136|ref|ZP_18613182.1| ribonuclease D [Escherichia coli PA23]
gi|425224652|ref|ZP_18619215.1| ribonuclease D [Escherichia coli PA49]
gi|425230886|ref|ZP_18625014.1| ribonuclease D [Escherichia coli PA45]
gi|425237037|ref|ZP_18630796.1| ribonuclease D [Escherichia coli TT12B]
gi|425249258|ref|ZP_18642254.1| ribonuclease D [Escherichia coli 5905]
gi|425261323|ref|ZP_18653410.1| ribonuclease D [Escherichia coli EC96038]
gi|425267361|ref|ZP_18659045.1| ribonuclease D [Escherichia coli 5412]
gi|425288678|ref|ZP_18679546.1| ribonuclease D [Escherichia coli 3006]
gi|425294817|ref|ZP_18685101.1| ribonuclease D [Escherichia coli PA38]
gi|425311503|ref|ZP_18700748.1| ribonuclease D [Escherichia coli EC1735]
gi|425317429|ref|ZP_18706282.1| ribonuclease D [Escherichia coli EC1736]
gi|425323534|ref|ZP_18711967.1| ribonuclease D [Escherichia coli EC1737]
gi|425342289|ref|ZP_18729269.1| ribonuclease D [Escherichia coli EC1848]
gi|425348101|ref|ZP_18734673.1| ribonuclease D [Escherichia coli EC1849]
gi|425354403|ref|ZP_18740548.1| ribonuclease D [Escherichia coli EC1850]
gi|425360374|ref|ZP_18746107.1| ribonuclease D [Escherichia coli EC1856]
gi|425366499|ref|ZP_18751786.1| ribonuclease D [Escherichia coli EC1862]
gi|425372921|ref|ZP_18757656.1| ribonuclease D [Escherichia coli EC1864]
gi|425385747|ref|ZP_18769395.1| ribonuclease D [Escherichia coli EC1866]
gi|425392435|ref|ZP_18775634.1| ribonuclease D [Escherichia coli EC1868]
gi|425404623|ref|ZP_18786954.1| ribonuclease D [Escherichia coli EC1870]
gi|425411199|ref|ZP_18793042.1| ribonuclease D [Escherichia coli NE098]
gi|425417505|ref|ZP_18798850.1| ribonuclease D [Escherichia coli FRIK523]
gi|425422500|ref|ZP_18803680.1| ribonuclease D [Escherichia coli 0.1288]
gi|425428760|ref|ZP_18809454.1| ribonuclease D [Escherichia coli 0.1304]
gi|428947120|ref|ZP_19019507.1| ribonuclease D [Escherichia coli 88.1467]
gi|428953356|ref|ZP_19025205.1| ribonuclease D [Escherichia coli 88.1042]
gi|428959277|ref|ZP_19030657.1| ribonuclease D [Escherichia coli 89.0511]
gi|428965730|ref|ZP_19036587.1| ribonuclease D [Escherichia coli 90.0091]
gi|428978184|ref|ZP_19048073.1| ribonuclease D [Escherichia coli 90.2281]
gi|428983973|ref|ZP_19053428.1| ribonuclease D [Escherichia coli 93.0055]
gi|429001995|ref|ZP_19070237.1| ribonuclease D [Escherichia coli 95.0183]
gi|429008245|ref|ZP_19075849.1| ribonuclease D [Escherichia coli 95.1288]
gi|429014732|ref|ZP_19081701.1| ribonuclease D [Escherichia coli 95.0943]
gi|429026646|ref|ZP_19092741.1| ribonuclease D [Escherichia coli 96.0427]
gi|429038868|ref|ZP_19104058.1| ribonuclease D [Escherichia coli 96.0932]
gi|429055587|ref|ZP_19119982.1| ribonuclease D [Escherichia coli 97.1742]
gi|429073329|ref|ZP_19136620.1| ribonuclease D [Escherichia coli 99.0678]
gi|429078655|ref|ZP_19141819.1| ribonuclease D [Escherichia coli 99.0713]
gi|429719311|ref|ZP_19254250.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-9450]
gi|429724654|ref|ZP_19259521.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-9990]
gi|429776359|ref|ZP_19308341.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02030]
gi|429781134|ref|ZP_19313066.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783393|ref|ZP_19315309.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02092]
gi|429790765|ref|ZP_19322623.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02093]
gi|429796497|ref|ZP_19328316.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02281]
gi|429798190|ref|ZP_19329992.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02318]
gi|429806703|ref|ZP_19338431.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02913]
gi|429811051|ref|ZP_19342752.1| ribonuclease D [Escherichia coli O104:H4 str. 11-03439]
gi|429817123|ref|ZP_19348765.1| ribonuclease D [Escherichia coli O104:H4 str. 11-04080]
gi|429822334|ref|ZP_19353933.1| ribonuclease D [Escherichia coli O104:H4 str. 11-03943]
gi|429832847|ref|ZP_19363327.1| ribonuclease D [Escherichia coli 97.0010]
gi|429912851|ref|ZP_19378807.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-9941]
gi|429913723|ref|ZP_19379671.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4984]
gi|429918765|ref|ZP_19384698.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-5604]
gi|429924572|ref|ZP_19390486.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4986]
gi|429928510|ref|ZP_19394412.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4987]
gi|429935062|ref|ZP_19400949.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4988]
gi|429940733|ref|ZP_19406607.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-5603]
gi|429948366|ref|ZP_19414221.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-6006]
gi|429951011|ref|ZP_19416859.1| ribonuclease D [Escherichia coli O104:H4 str. Ec12-0465]
gi|429954307|ref|ZP_19420143.1| ribonuclease D [Escherichia coli O104:H4 str. Ec12-0466]
gi|432353714|ref|ZP_19596988.1| ribonuclease D [Escherichia coli KTE2]
gi|432376952|ref|ZP_19619949.1| ribonuclease D [Escherichia coli KTE12]
gi|432402065|ref|ZP_19644818.1| ribonuclease D [Escherichia coli KTE26]
gi|432426238|ref|ZP_19668743.1| ribonuclease D [Escherichia coli KTE181]
gi|432460857|ref|ZP_19703008.1| ribonuclease D [Escherichia coli KTE204]
gi|432475980|ref|ZP_19717980.1| ribonuclease D [Escherichia coli KTE208]
gi|432481143|ref|ZP_19723101.1| ribonuclease D [Escherichia coli KTE210]
gi|432489410|ref|ZP_19731291.1| ribonuclease D [Escherichia coli KTE213]
gi|432517867|ref|ZP_19755059.1| ribonuclease D [Escherichia coli KTE228]
gi|432531179|ref|ZP_19768208.1| ribonuclease D [Escherichia coli KTE233]
gi|432537966|ref|ZP_19774869.1| ribonuclease D [Escherichia coli KTE235]
gi|432631538|ref|ZP_19867467.1| ribonuclease D [Escherichia coli KTE80]
gi|432641184|ref|ZP_19877021.1| ribonuclease D [Escherichia coli KTE83]
gi|432666170|ref|ZP_19901752.1| ribonuclease D [Escherichia coli KTE116]
gi|432674840|ref|ZP_19910313.1| ribonuclease D [Escherichia coli KTE142]
gi|432718920|ref|ZP_19953889.1| ribonuclease D [Escherichia coli KTE9]
gi|432750254|ref|ZP_19984861.1| ribonuclease D [Escherichia coli KTE29]
gi|432765158|ref|ZP_19999597.1| ribonuclease D [Escherichia coli KTE48]
gi|432774891|ref|ZP_20009173.1| ribonuclease D [Escherichia coli KTE54]
gi|432805852|ref|ZP_20039790.1| ribonuclease D [Escherichia coli KTE91]
gi|432809445|ref|ZP_20043338.1| ribonuclease D [Escherichia coli KTE101]
gi|432815498|ref|ZP_20049283.1| ribonuclease D [Escherichia coli KTE115]
gi|432831783|ref|ZP_20065357.1| ribonuclease D [Escherichia coli KTE135]
gi|432834794|ref|ZP_20068333.1| ribonuclease D [Escherichia coli KTE136]
gi|432839425|ref|ZP_20072912.1| ribonuclease D [Escherichia coli KTE140]
gi|432882041|ref|ZP_20098121.1| ribonuclease D [Escherichia coli KTE154]
gi|432886744|ref|ZP_20100833.1| ribonuclease D [Escherichia coli KTE158]
gi|432912841|ref|ZP_20118651.1| ribonuclease D [Escherichia coli KTE190]
gi|432934446|ref|ZP_20133955.1| ribonuclease D [Escherichia coli KTE184]
gi|433018760|ref|ZP_20207006.1| ribonuclease D [Escherichia coli KTE105]
gi|433053307|ref|ZP_20240502.1| ribonuclease D [Escherichia coli KTE122]
gi|433068086|ref|ZP_20254887.1| ribonuclease D [Escherichia coli KTE128]
gi|433092212|ref|ZP_20278486.1| ribonuclease D [Escherichia coli KTE138]
gi|433158832|ref|ZP_20343680.1| ribonuclease D [Escherichia coli KTE177]
gi|433178446|ref|ZP_20362858.1| ribonuclease D [Escherichia coli KTE82]
gi|433193772|ref|ZP_20377771.1| ribonuclease D [Escherichia coli KTE90]
gi|433203378|ref|ZP_20387159.1| ribonuclease D [Escherichia coli KTE95]
gi|444925015|ref|ZP_21244421.1| ribonuclease D [Escherichia coli 09BKT078844]
gi|444930866|ref|ZP_21249952.1| ribonuclease D [Escherichia coli 99.0814]
gi|444936157|ref|ZP_21254995.1| ribonuclease D [Escherichia coli 99.0815]
gi|444941792|ref|ZP_21260366.1| ribonuclease D [Escherichia coli 99.0816]
gi|444947409|ref|ZP_21265764.1| ribonuclease D [Escherichia coli 99.0839]
gi|444952984|ref|ZP_21271125.1| ribonuclease D [Escherichia coli 99.0848]
gi|444958489|ref|ZP_21276390.1| ribonuclease D [Escherichia coli 99.1753]
gi|444963754|ref|ZP_21281413.1| ribonuclease D [Escherichia coli 99.1775]
gi|444969539|ref|ZP_21286946.1| ribonuclease D [Escherichia coli 99.1793]
gi|444980373|ref|ZP_21297316.1| ribonuclease D [Escherichia coli ATCC 700728]
gi|444985695|ref|ZP_21302510.1| ribonuclease D [Escherichia coli PA11]
gi|444990981|ref|ZP_21307663.1| ribonuclease D [Escherichia coli PA19]
gi|444996182|ref|ZP_21312721.1| ribonuclease D [Escherichia coli PA13]
gi|445001816|ref|ZP_21318234.1| ribonuclease D [Escherichia coli PA2]
gi|445007278|ref|ZP_21323561.1| ribonuclease D [Escherichia coli PA47]
gi|445012395|ref|ZP_21328536.1| ribonuclease D [Escherichia coli PA48]
gi|445018133|ref|ZP_21334128.1| ribonuclease D [Escherichia coli PA8]
gi|445023785|ref|ZP_21339643.1| ribonuclease D [Escherichia coli 7.1982]
gi|445029024|ref|ZP_21344736.1| ribonuclease D [Escherichia coli 99.1781]
gi|445034468|ref|ZP_21350030.1| ribonuclease D [Escherichia coli 99.1762]
gi|445040184|ref|ZP_21355590.1| ribonuclease D [Escherichia coli PA35]
gi|445050901|ref|ZP_21365996.1| ribonuclease D [Escherichia coli 95.0083]
gi|445056712|ref|ZP_21371601.1| ribonuclease D [Escherichia coli 99.0670]
gi|291427508|gb|EFF00535.1| ribonuclease D [Escherichia coli FVEC1412]
gi|298278384|gb|EFI19898.1| ribonuclease D [Escherichia coli FVEC1302]
gi|300357343|gb|EFJ73213.1| ribonuclease D [Escherichia coli MS 198-1]
gi|300415143|gb|EFJ98453.1| ribonuclease D [Escherichia coli MS 115-1]
gi|300418949|gb|EFK02260.1| ribonuclease D [Escherichia coli MS 182-1]
gi|300524294|gb|EFK45363.1| ribonuclease D [Escherichia coli MS 119-7]
gi|300531001|gb|EFK52063.1| ribonuclease D [Escherichia coli MS 107-1]
gi|306906256|gb|EFN36773.1| ribonuclease D [Escherichia coli W]
gi|308122085|gb|EFO59347.1| ribonuclease D [Escherichia coli MS 145-7]
gi|315061107|gb|ADT75434.1| ribonuclease D [Escherichia coli W]
gi|320188500|gb|EFW63162.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212]
gi|320197983|gb|EFW72591.1| Ribonuclease D [Escherichia coli EC4100B]
gi|320641655|gb|EFX11043.1| ribonuclease D [Escherichia coli O157:H7 str. G5101]
gi|320647014|gb|EFX15847.1| ribonuclease D [Escherichia coli O157:H- str. 493-89]
gi|320652296|gb|EFX20594.1| ribonuclease D [Escherichia coli O157:H- str. H 2687]
gi|320657898|gb|EFX25660.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320658471|gb|EFX26165.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905]
gi|320668369|gb|EFX35196.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61]
gi|323158715|gb|EFZ44729.1| ribonuclease D [Escherichia coli E128010]
gi|323186449|gb|EFZ71797.1| ribonuclease D [Escherichia coli OK1357]
gi|323378318|gb|ADX50586.1| ribonuclease D [Escherichia coli KO11FL]
gi|323948311|gb|EGB44299.1| ribonuclease D [Escherichia coli H120]
gi|324018061|gb|EGB87280.1| ribonuclease D [Escherichia coli MS 117-3]
gi|324118864|gb|EGC12753.1| ribonuclease D [Escherichia coli E1167]
gi|326342179|gb|EGD65960.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044]
gi|326343729|gb|EGD67491.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125]
gi|331059091|gb|EGI31068.1| ribonuclease D [Escherichia coli TA143]
gi|331063686|gb|EGI35597.1| ribonuclease D [Escherichia coli TA271]
gi|331069536|gb|EGI40923.1| ribonuclease D [Escherichia coli TA280]
gi|331074140|gb|EGI45460.1| ribonuclease D [Escherichia coli H591]
gi|338770117|gb|EGP24884.1| Ribonuclease D [Escherichia coli PCN033]
gi|341918608|gb|EGT68221.1| hypothetical protein C22711_2251 [Escherichia coli O104:H4 str.
C227-11]
gi|342930800|gb|EGU99522.1| ribonuclease D [Escherichia coli MS 79-10]
gi|345338182|gb|EGW70613.1| ribonuclease D [Escherichia coli STEC_C165-02]
gi|345339903|gb|EGW72328.1| ribonuclease D [Escherichia coli STEC_B2F1]
gi|345350059|gb|EGW82334.1| ribonuclease D [Escherichia coli STEC_94C]
gi|345355243|gb|EGW87454.1| ribonuclease D [Escherichia coli 3030-1]
gi|345358960|gb|EGW91139.1| ribonuclease D [Escherichia coli STEC_DG131-3]
gi|345374187|gb|EGX06140.1| ribonuclease D [Escherichia coli STEC_MHI813]
gi|354861571|gb|EHF22009.1| ribonuclease D [Escherichia coli O104:H4 str. C236-11]
gi|354868924|gb|EHF29336.1| ribonuclease D [Escherichia coli O104:H4 str. C227-11]
gi|354871020|gb|EHF31420.1| ribonuclease D [Escherichia coli O104:H4 str. 04-8351]
gi|354872847|gb|EHF33224.1| ribonuclease D [Escherichia coli O104:H4 str. 09-7901]
gi|354881420|gb|EHF41750.1| ribonuclease D [Escherichia coli O104:H4 str. 11-3677]
gi|354891138|gb|EHF51373.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4404]
gi|354893971|gb|EHF54168.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4522]
gi|354896118|gb|EHF56294.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354899093|gb|EHF59243.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4623]
gi|354900828|gb|EHF60960.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354913857|gb|EHF73845.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354917586|gb|EHF77549.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354919527|gb|EHF79470.1| ribonuclease D [Escherichia coli O104:H4 str. 11-4632 C4]
gi|371597167|gb|EHN85992.1| ribonuclease D [Escherichia coli TA124]
gi|371599137|gb|EHN87927.1| ribonuclease D [Escherichia coli H494]
gi|377894921|gb|EHU59334.1| ribonuclease D [Escherichia coli DEC3A]
gi|377906619|gb|EHU70861.1| ribonuclease D [Escherichia coli DEC3C]
gi|377911954|gb|EHU76119.1| ribonuclease D [Escherichia coli DEC3D]
gi|377914678|gb|EHU78800.1| ribonuclease D [Escherichia coli DEC3E]
gi|377923688|gb|EHU87649.1| ribonuclease D [Escherichia coli DEC3F]
gi|377928336|gb|EHU92247.1| ribonuclease D [Escherichia coli DEC4A]
gi|377932908|gb|EHU96754.1| ribonuclease D [Escherichia coli DEC4B]
gi|377943916|gb|EHV07625.1| ribonuclease D [Escherichia coli DEC4C]
gi|377944487|gb|EHV08189.1| ribonuclease D [Escherichia coli DEC4D]
gi|377949925|gb|EHV13556.1| ribonuclease D [Escherichia coli DEC4E]
gi|377958871|gb|EHV22383.1| ribonuclease D [Escherichia coli DEC4F]
gi|377968825|gb|EHV32216.1| ribonuclease D [Escherichia coli DEC5B]
gi|377976185|gb|EHV39496.1| ribonuclease D [Escherichia coli DEC5C]
gi|377977139|gb|EHV40440.1| ribonuclease D [Escherichia coli DEC5D]
gi|377985748|gb|EHV48960.1| ribonuclease D [Escherichia coli DEC5E]
gi|378129178|gb|EHW90550.1| ribonuclease D [Escherichia coli DEC10E]
gi|378131628|gb|EHW92985.1| ribonuclease D [Escherichia coli DEC11A]
gi|378142118|gb|EHX03320.1| ribonuclease D [Escherichia coli DEC11B]
gi|378149881|gb|EHX11001.1| ribonuclease D [Escherichia coli DEC11D]
gi|378151729|gb|EHX12836.1| ribonuclease D [Escherichia coli DEC11C]
gi|378158572|gb|EHX19590.1| ribonuclease D [Escherichia coli DEC11E]
gi|378167320|gb|EHX28233.1| ribonuclease D [Escherichia coli DEC12B]
gi|378170813|gb|EHX31688.1| ribonuclease D [Escherichia coli DEC12A]
gi|378172221|gb|EHX33078.1| ribonuclease D [Escherichia coli DEC12C]
gi|378186709|gb|EHX47332.1| ribonuclease D [Escherichia coli DEC12D]
gi|378187336|gb|EHX47948.1| ribonuclease D [Escherichia coli DEC13A]
gi|378201959|gb|EHX62399.1| ribonuclease D [Escherichia coli DEC13C]
gi|378205188|gb|EHX65603.1| ribonuclease D [Escherichia coli DEC13D]
gi|378214030|gb|EHX74339.1| ribonuclease D [Escherichia coli DEC13E]
gi|378218593|gb|EHX78864.1| ribonuclease D [Escherichia coli DEC14A]
gi|378228981|gb|EHX89131.1| ribonuclease D [Escherichia coli DEC14C]
gi|378232087|gb|EHX92189.1| ribonuclease D [Escherichia coli DEC14D]
gi|383392754|gb|AFH17712.1| ribonuclease D [Escherichia coli KO11FL]
gi|383405355|gb|AFH11598.1| ribonuclease D [Escherichia coli W]
gi|383472948|gb|EID64978.1| ribonuclease D [Escherichia coli W26]
gi|384470154|gb|EIE54276.1| ribonuclease D [Escherichia coli AI27]
gi|385713179|gb|EIG50115.1| ribonuclease D [Escherichia coli B799]
gi|386151958|gb|EIH03247.1| ribonuclease D [Escherichia coli 5.0588]
gi|386158066|gb|EIH14403.1| ribonuclease D [Escherichia coli 97.0259]
gi|386168700|gb|EIH35216.1| ribonuclease D [Escherichia coli 96.0497]
gi|386180152|gb|EIH57626.1| ribonuclease D [Escherichia coli 3.2608]
gi|386181348|gb|EIH64111.1| ribonuclease D [Escherichia coli 93.0624]
gi|386200558|gb|EIH99548.1| ribonuclease D [Escherichia coli 96.154]
gi|386217621|gb|EII34106.1| ribonuclease D [Escherichia coli 4.0967]
gi|388393418|gb|EIL54800.1| ribonuclease D [Escherichia coli 541-15]
gi|388399999|gb|EIL60769.1| ribonuclease D [Escherichia coli 541-1]
gi|388417644|gb|EIL77480.1| ribonuclease D [Escherichia coli 576-1]
gi|388417727|gb|EIL77559.1| ribonuclease D [Escherichia coli CUMT8]
gi|390645916|gb|EIN25054.1| ribonuclease D [Escherichia coli FDA505]
gi|390663505|gb|EIN41001.1| ribonuclease D [Escherichia coli 93-001]
gi|390664883|gb|EIN42211.1| ribonuclease D [Escherichia coli FRIK1985]
gi|390665937|gb|EIN43143.1| ribonuclease D [Escherichia coli FRIK1990]
gi|390681497|gb|EIN57290.1| ribonuclease D [Escherichia coli PA3]
gi|390684539|gb|EIN60150.1| ribonuclease D [Escherichia coli PA5]
gi|390685521|gb|EIN60991.1| ribonuclease D [Escherichia coli PA9]
gi|390701370|gb|EIN75594.1| ribonuclease D [Escherichia coli PA10]
gi|390703089|gb|EIN77140.1| ribonuclease D [Escherichia coli PA15]
gi|390703717|gb|EIN77712.1| ribonuclease D [Escherichia coli PA14]
gi|390726948|gb|EIN99376.1| ribonuclease D [Escherichia coli PA25]
gi|390727318|gb|EIN99735.1| ribonuclease D [Escherichia coli PA24]
gi|390729767|gb|EIO01927.1| ribonuclease D [Escherichia coli PA28]
gi|390745142|gb|EIO15962.1| ribonuclease D [Escherichia coli PA32]
gi|390747463|gb|EIO18016.1| ribonuclease D [Escherichia coli PA33]
gi|390759345|gb|EIO28743.1| ribonuclease D [Escherichia coli PA40]
gi|390769827|gb|EIO38723.1| ribonuclease D [Escherichia coli PA41]
gi|390771727|gb|EIO40382.1| ribonuclease D [Escherichia coli PA42]
gi|390782750|gb|EIO50384.1| ribonuclease D [Escherichia coli TW06591]
gi|390791037|gb|EIO58432.1| ribonuclease D [Escherichia coli TW10246]
gi|390798344|gb|EIO65540.1| ribonuclease D [Escherichia coli TW11039]
gi|390816799|gb|EIO83259.1| ribonuclease D [Escherichia coli TW10119]
gi|390829158|gb|EIO94766.1| ribonuclease D [Escherichia coli EC4203]
gi|390832526|gb|EIO97768.1| ribonuclease D [Escherichia coli TW09195]
gi|390833905|gb|EIO98881.1| ribonuclease D [Escherichia coli EC4196]
gi|390850690|gb|EIP14047.1| ribonuclease D [Escherichia coli TW14313]
gi|390863572|gb|EIP25704.1| ribonuclease D [Escherichia coli EC4422]
gi|390867934|gb|EIP29700.1| ribonuclease D [Escherichia coli EC4013]
gi|390880534|gb|EIP41210.1| ribonuclease D [Escherichia coli EC4439]
gi|390885158|gb|EIP45407.1| ribonuclease D [Escherichia coli EC4436]
gi|390896528|gb|EIP55914.1| ribonuclease D [Escherichia coli EC4437]
gi|390900487|gb|EIP59706.1| ribonuclease D [Escherichia coli EC4448]
gi|390901087|gb|EIP60271.1| ribonuclease D [Escherichia coli EC1738]
gi|390909080|gb|EIP67881.1| ribonuclease D [Escherichia coli EC1734]
gi|390921181|gb|EIP79404.1| ribonuclease D [Escherichia coli EC1863]
gi|390922073|gb|EIP80181.1| ribonuclease D [Escherichia coli EC1845]
gi|391264466|gb|EIQ23458.1| ribonuclease D [Shigella flexneri K-315]
gi|391313249|gb|EIQ70842.1| ribonuclease D [Escherichia coli EPEC C342-62]
gi|408067065|gb|EKH01508.1| ribonuclease D [Escherichia coli PA7]
gi|408070845|gb|EKH05201.1| ribonuclease D [Escherichia coli FRIK920]
gi|408076174|gb|EKH10402.1| ribonuclease D [Escherichia coli PA34]
gi|408081948|gb|EKH15940.1| ribonuclease D [Escherichia coli FDA506]
gi|408093184|gb|EKH26283.1| ribonuclease D [Escherichia coli FDA504]
gi|408099056|gb|EKH31710.1| ribonuclease D [Escherichia coli FRIK1999]
gi|408106869|gb|EKH38960.1| ribonuclease D [Escherichia coli FRIK1997]
gi|408110608|gb|EKH42395.1| ribonuclease D [Escherichia coli NE1487]
gi|408117825|gb|EKH48999.1| ribonuclease D [Escherichia coli NE037]
gi|408123540|gb|EKH54279.1| ribonuclease D [Escherichia coli FRIK2001]
gi|408140981|gb|EKH70461.1| ribonuclease D [Escherichia coli PA23]
gi|408142750|gb|EKH72099.1| ribonuclease D [Escherichia coli PA49]
gi|408147789|gb|EKH76698.1| ribonuclease D [Escherichia coli PA45]
gi|408156135|gb|EKH84342.1| ribonuclease D [Escherichia coli TT12B]
gi|408165679|gb|EKH93356.1| ribonuclease D [Escherichia coli 5905]
gi|408183553|gb|EKI09978.1| ribonuclease D [Escherichia coli EC96038]
gi|408184382|gb|EKI10705.1| ribonuclease D [Escherichia coli 5412]
gi|408214846|gb|EKI39254.1| ribonuclease D [Escherichia coli 3006]
gi|408220336|gb|EKI44392.1| ribonuclease D [Escherichia coli PA38]
gi|408229672|gb|EKI53099.1| ribonuclease D [Escherichia coli EC1735]
gi|408241131|gb|EKI63781.1| ribonuclease D [Escherichia coli EC1736]
gi|408245110|gb|EKI67503.1| ribonuclease D [Escherichia coli EC1737]
gi|408261957|gb|EKI82910.1| ribonuclease D [Escherichia coli EC1848]
gi|408267608|gb|EKI88055.1| ribonuclease D [Escherichia coli EC1849]
gi|408277554|gb|EKI97341.1| ribonuclease D [Escherichia coli EC1850]
gi|408279848|gb|EKI99431.1| ribonuclease D [Escherichia coli EC1856]
gi|408291620|gb|EKJ10213.1| ribonuclease D [Escherichia coli EC1862]
gi|408293837|gb|EKJ12258.1| ribonuclease D [Escherichia coli EC1864]
gi|408310538|gb|EKJ27579.1| ribonuclease D [Escherichia coli EC1868]
gi|408311312|gb|EKJ28322.1| ribonuclease D [Escherichia coli EC1866]
gi|408328109|gb|EKJ43726.1| ribonuclease D [Escherichia coli NE098]
gi|408328930|gb|EKJ44469.1| ribonuclease D [Escherichia coli EC1870]
gi|408339067|gb|EKJ53687.1| ribonuclease D [Escherichia coli FRIK523]
gi|408344738|gb|EKJ59087.1| ribonuclease D [Escherichia coli 0.1288]
gi|408348703|gb|EKJ62784.1| ribonuclease D [Escherichia coli 0.1304]
gi|408460793|gb|EKJ84571.1| ribonuclease D [Escherichia coli AD30]
gi|408551827|gb|EKK29065.1| ribonuclease D [Escherichia coli 5.2239]
gi|408552521|gb|EKK29693.1| ribonuclease D [Escherichia coli 3.4870]
gi|408553090|gb|EKK30221.1| ribonuclease D [Escherichia coli 6.0172]
gi|408574295|gb|EKK50072.1| ribonuclease D [Escherichia coli 8.0586]
gi|408582413|gb|EKK57628.1| ribonuclease D [Escherichia coli 10.0833]
gi|408583080|gb|EKK58258.1| ribonuclease D [Escherichia coli 8.2524]
gi|408594659|gb|EKK68940.1| ribonuclease D [Escherichia coli 10.0869]
gi|408598225|gb|EKK72184.1| ribonuclease D [Escherichia coli 88.0221]
gi|408602261|gb|EKK75982.1| ribonuclease D [Escherichia coli 8.0416]
gi|408613614|gb|EKK86901.1| ribonuclease D [Escherichia coli 10.0821]
gi|427207652|gb|EKV77820.1| ribonuclease D [Escherichia coli 88.1042]
gi|427209313|gb|EKV79352.1| ribonuclease D [Escherichia coli 89.0511]
gi|427210587|gb|EKV80442.1| ribonuclease D [Escherichia coli 88.1467]
gi|427226366|gb|EKV94956.1| ribonuclease D [Escherichia coli 90.2281]
gi|427226619|gb|EKV95208.1| ribonuclease D [Escherichia coli 90.0091]
gi|427245437|gb|EKW12721.1| ribonuclease D [Escherichia coli 93.0055]
gi|427263460|gb|EKW29218.1| ribonuclease D [Escherichia coli 95.0943]
gi|427264476|gb|EKW30157.1| ribonuclease D [Escherichia coli 95.0183]
gi|427266444|gb|EKW31885.1| ribonuclease D [Escherichia coli 95.1288]
gi|427282505|gb|EKW46750.1| ribonuclease D [Escherichia coli 96.0427]
gi|427294322|gb|EKW57507.1| ribonuclease D [Escherichia coli 96.0932]
gi|427315750|gb|EKW77734.1| ribonuclease D [Escherichia coli 97.1742]
gi|427330115|gb|EKW91393.1| ribonuclease D [Escherichia coli 99.0678]
gi|427330512|gb|EKW91782.1| ribonuclease D [Escherichia coli 99.0713]
gi|429256963|gb|EKY41066.1| ribonuclease D [Escherichia coli 97.0010]
gi|429346238|gb|EKY83018.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02030]
gi|429348079|gb|EKY84850.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02033-1]
gi|429354780|gb|EKY91476.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02092]
gi|429362980|gb|EKY99624.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02093]
gi|429364879|gb|EKZ01497.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02281]
gi|429366603|gb|EKZ03205.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02318]
gi|429377067|gb|EKZ13592.1| ribonuclease D [Escherichia coli O104:H4 str. 11-02913]
gi|429381578|gb|EKZ18063.1| ribonuclease D [Escherichia coli O104:H4 str. 11-03943]
gi|429384604|gb|EKZ21061.1| ribonuclease D [Escherichia coli O104:H4 str. 11-03439]
gi|429393277|gb|EKZ29673.1| ribonuclease D [Escherichia coli O104:H4 str. 11-04080]
gi|429393968|gb|EKZ30354.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-9450]
gi|429407487|gb|EKZ43740.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4984]
gi|429408344|gb|EKZ44582.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-9990]
gi|429409790|gb|EKZ46016.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4986]
gi|429426478|gb|EKZ62567.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-5603]
gi|429426884|gb|EKZ62971.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4987]
gi|429431448|gb|EKZ67497.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-5604]
gi|429433849|gb|EKZ69879.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-4988]
gi|429440810|gb|EKZ76787.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-6006]
gi|429444388|gb|EKZ80334.1| ribonuclease D [Escherichia coli O104:H4 str. Ec12-0466]
gi|429450017|gb|EKZ85915.1| ribonuclease D [Escherichia coli O104:H4 str. Ec12-0465]
gi|429453878|gb|EKZ89746.1| ribonuclease D [Escherichia coli O104:H4 str. Ec11-9941]
gi|430875955|gb|ELB99476.1| ribonuclease D [Escherichia coli KTE2]
gi|430899244|gb|ELC21349.1| ribonuclease D [Escherichia coli KTE12]
gi|430926895|gb|ELC47482.1| ribonuclease D [Escherichia coli KTE26]
gi|430956578|gb|ELC75252.1| ribonuclease D [Escherichia coli KTE181]
gi|430989570|gb|ELD06024.1| ribonuclease D [Escherichia coli KTE204]
gi|431005921|gb|ELD20928.1| ribonuclease D [Escherichia coli KTE208]
gi|431007800|gb|ELD22611.1| ribonuclease D [Escherichia coli KTE210]
gi|431021446|gb|ELD34769.1| ribonuclease D [Escherichia coli KTE213]
gi|431051915|gb|ELD61577.1| ribonuclease D [Escherichia coli KTE228]
gi|431054407|gb|ELD63977.1| ribonuclease D [Escherichia coli KTE233]
gi|431069880|gb|ELD78200.1| ribonuclease D [Escherichia coli KTE235]
gi|431171006|gb|ELE71187.1| ribonuclease D [Escherichia coli KTE80]
gi|431183449|gb|ELE83265.1| ribonuclease D [Escherichia coli KTE83]
gi|431201545|gb|ELF00242.1| ribonuclease D [Escherichia coli KTE116]
gi|431215341|gb|ELF13037.1| ribonuclease D [Escherichia coli KTE142]
gi|431262732|gb|ELF54721.1| ribonuclease D [Escherichia coli KTE9]
gi|431297171|gb|ELF86829.1| ribonuclease D [Escherichia coli KTE29]
gi|431310919|gb|ELF99099.1| ribonuclease D [Escherichia coli KTE48]
gi|431318606|gb|ELG06301.1| ribonuclease D [Escherichia coli KTE54]
gi|431354973|gb|ELG41687.1| ribonuclease D [Escherichia coli KTE91]
gi|431362213|gb|ELG48791.1| ribonuclease D [Escherichia coli KTE101]
gi|431364554|gb|ELG51085.1| ribonuclease D [Escherichia coli KTE115]
gi|431375753|gb|ELG61076.1| ribonuclease D [Escherichia coli KTE135]
gi|431385154|gb|ELG69141.1| ribonuclease D [Escherichia coli KTE136]
gi|431389577|gb|ELG73288.1| ribonuclease D [Escherichia coli KTE140]
gi|431411547|gb|ELG94658.1| ribonuclease D [Escherichia coli KTE154]
gi|431416789|gb|ELG99260.1| ribonuclease D [Escherichia coli KTE158]
gi|431440270|gb|ELH21599.1| ribonuclease D [Escherichia coli KTE190]
gi|431453427|gb|ELH33834.1| ribonuclease D [Escherichia coli KTE184]
gi|431533698|gb|ELI10197.1| ribonuclease D [Escherichia coli KTE105]
gi|431571703|gb|ELI44573.1| ribonuclease D [Escherichia coli KTE122]
gi|431585778|gb|ELI57725.1| ribonuclease D [Escherichia coli KTE128]
gi|431610758|gb|ELI80042.1| ribonuclease D [Escherichia coli KTE138]
gi|431679520|gb|ELJ45432.1| ribonuclease D [Escherichia coli KTE177]
gi|431704810|gb|ELJ69435.1| ribonuclease D [Escherichia coli KTE82]
gi|431717074|gb|ELJ81176.1| ribonuclease D [Escherichia coli KTE90]
gi|431722446|gb|ELJ86412.1| ribonuclease D [Escherichia coli KTE95]
gi|444539960|gb|ELV19667.1| ribonuclease D [Escherichia coli 99.0814]
gi|444542763|gb|ELV22099.1| ribonuclease D [Escherichia coli 09BKT078844]
gi|444548748|gb|ELV27104.1| ribonuclease D [Escherichia coli 99.0815]
gi|444559801|gb|ELV37002.1| ribonuclease D [Escherichia coli 99.0839]
gi|444561753|gb|ELV38856.1| ribonuclease D [Escherichia coli 99.0816]
gi|444565851|gb|ELV42694.1| ribonuclease D [Escherichia coli 99.0848]
gi|444575551|gb|ELV51787.1| ribonuclease D [Escherichia coli 99.1753]
gi|444579585|gb|ELV55571.1| ribonuclease D [Escherichia coli 99.1775]
gi|444581679|gb|ELV57517.1| ribonuclease D [Escherichia coli 99.1793]
gi|444595275|gb|ELV70379.1| ribonuclease D [Escherichia coli PA11]
gi|444595455|gb|ELV70557.1| ribonuclease D [Escherichia coli ATCC 700728]
gi|444609102|gb|ELV83561.1| ribonuclease D [Escherichia coli PA19]
gi|444609473|gb|ELV83931.1| ribonuclease D [Escherichia coli PA13]
gi|444617375|gb|ELV91491.1| ribonuclease D [Escherichia coli PA2]
gi|444626283|gb|ELW00079.1| ribonuclease D [Escherichia coli PA47]
gi|444626666|gb|ELW00458.1| ribonuclease D [Escherichia coli PA48]
gi|444631845|gb|ELW05428.1| ribonuclease D [Escherichia coli PA8]
gi|444641137|gb|ELW14376.1| ribonuclease D [Escherichia coli 7.1982]
gi|444644070|gb|ELW17194.1| ribonuclease D [Escherichia coli 99.1781]
gi|444647344|gb|ELW20318.1| ribonuclease D [Escherichia coli 99.1762]
gi|444655955|gb|ELW28491.1| ribonuclease D [Escherichia coli PA35]
gi|444667775|gb|ELW39806.1| ribonuclease D [Escherichia coli 95.0083]
gi|444670965|gb|ELW42804.1| ribonuclease D [Escherichia coli 99.0670]
Length = 371
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|398912875|ref|ZP_10656174.1| ribonuclease D [Pseudomonas sp. GM49]
gi|398181586|gb|EJM69141.1| ribonuclease D [Pseudomonas sp. GM49]
Length = 377
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 21/286 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + +L +E +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 IRDNDSLGRLCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGVRAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D K DW RPL E I YA D +L V+ ++ LSA K VL
Sbjct: 126 EVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVKLRPKLSAE---KYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR++ AR +D
Sbjct: 183 D--GAELVANLRREIDPYE------VYRDAKLAWKLSRAQLAVLRELCAWREQEARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
++ H L +A++ P ++ + + P+TV+ E +LD+
Sbjct: 235 PRNRIIREHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDL 280
>gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501]
gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501]
Length = 401
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 133/287 (46%), Gaps = 12/287 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + + +L +E +Q +A+D E+ ++ L+Q+ + Y++D L +R D
Sbjct: 35 VVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVR-DWH 93
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 94 PFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQ 152
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E ++YA D +L +Y+ + LS K+ VL
Sbjct: 153 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLS---DDKRAWVLE 209
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E EE Y + ++ L QQ L+ L WR+R AR +++
Sbjct: 210 --DGAELVANLQRESD--PEEAYREVKQAWR-LKPQQLAVLKVLTAWRERQARARNQPRN 264
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
VL L +A++ P D+ + P+TV++ + A+I +A
Sbjct: 265 RVLREASLWPLARTQPCDLVTLARIDEMHPRTVRQDGEALLAMIREA 311
>gi|387892742|ref|YP_006323039.1| ribonuclease D [Pseudomonas fluorescens A506]
gi|387162947|gb|AFJ58146.1| ribonuclease D [Pseudomonas fluorescens A506]
Length = 377
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 130/278 (46%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 ICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + ++KV H D++ L + G V +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVIKVVHACSEDLEVLSRLTGSLPVPLFDTQLAAAYLNLGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D++ K DW RPL E I YA D +L VY ++ LS K VL
Sbjct: 126 AVLDIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPQLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR++ AR +D
Sbjct: 183 D--GAELVANLRREIDPYE------VYRDAKLAWKLSRAQLAVLRELCAWREQQARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A+S P ++ + + P+TV++
Sbjct: 235 PRNRIIREHSLWPLAKSQPDNLAALGKIEDMHPRTVRQ 272
>gi|300904667|ref|ZP_07122502.1| ribonuclease D [Escherichia coli MS 84-1]
gi|301305900|ref|ZP_07211983.1| ribonuclease D [Escherichia coli MS 124-1]
gi|415817959|ref|ZP_11507875.1| ribonuclease D [Escherichia coli OK1180]
gi|415861282|ref|ZP_11534948.1| ribonuclease D [Escherichia coli MS 85-1]
gi|417195518|ref|ZP_12015932.1| ribonuclease D [Escherichia coli 4.0522]
gi|417213115|ref|ZP_12022477.1| ribonuclease D [Escherichia coli JB1-95]
gi|417247564|ref|ZP_12040320.1| ribonuclease D [Escherichia coli 9.0111]
gi|417639338|ref|ZP_12289488.1| ribonuclease D [Escherichia coli TX1999]
gi|419181010|ref|ZP_13724627.1| ribonuclease D [Escherichia coli DEC7C]
gi|419186444|ref|ZP_13729961.1| ribonuclease D [Escherichia coli DEC7D]
gi|419191731|ref|ZP_13735191.1| ribonuclease D [Escherichia coli DEC7E]
gi|419221548|ref|ZP_13764479.1| ribonuclease D [Escherichia coli DEC8E]
gi|419226878|ref|ZP_13769743.1| ribonuclease D [Escherichia coli DEC9A]
gi|419232503|ref|ZP_13775284.1| ribonuclease D [Escherichia coli DEC9B]
gi|419238001|ref|ZP_13780726.1| ribonuclease D [Escherichia coli DEC9C]
gi|419243439|ref|ZP_13786080.1| ribonuclease D [Escherichia coli DEC9D]
gi|419249262|ref|ZP_13791851.1| ribonuclease D [Escherichia coli DEC9E]
gi|419284153|ref|ZP_13826337.1| ribonuclease D [Escherichia coli DEC10F]
gi|420385795|ref|ZP_14885154.1| ribonuclease D [Escherichia coli EPECa12]
gi|433130330|ref|ZP_20315775.1| ribonuclease D [Escherichia coli KTE163]
gi|433135032|ref|ZP_20320386.1| ribonuclease D [Escherichia coli KTE166]
gi|300403417|gb|EFJ86955.1| ribonuclease D [Escherichia coli MS 84-1]
gi|300838826|gb|EFK66586.1| ribonuclease D [Escherichia coli MS 124-1]
gi|315257385|gb|EFU37353.1| ribonuclease D [Escherichia coli MS 85-1]
gi|323180583|gb|EFZ66128.1| ribonuclease D [Escherichia coli OK1180]
gi|345393736|gb|EGX23505.1| ribonuclease D [Escherichia coli TX1999]
gi|378024378|gb|EHV87032.1| ribonuclease D [Escherichia coli DEC7C]
gi|378030148|gb|EHV92752.1| ribonuclease D [Escherichia coli DEC7D]
gi|378039674|gb|EHW02162.1| ribonuclease D [Escherichia coli DEC7E]
gi|378067443|gb|EHW29565.1| ribonuclease D [Escherichia coli DEC8E]
gi|378075969|gb|EHW37982.1| ribonuclease D [Escherichia coli DEC9A]
gi|378078996|gb|EHW40975.1| ribonuclease D [Escherichia coli DEC9B]
gi|378084551|gb|EHW46453.1| ribonuclease D [Escherichia coli DEC9C]
gi|378092047|gb|EHW53874.1| ribonuclease D [Escherichia coli DEC9D]
gi|378096635|gb|EHW58405.1| ribonuclease D [Escherichia coli DEC9E]
gi|378134022|gb|EHW95352.1| ribonuclease D [Escherichia coli DEC10F]
gi|386189560|gb|EIH78326.1| ribonuclease D [Escherichia coli 4.0522]
gi|386194503|gb|EIH88754.1| ribonuclease D [Escherichia coli JB1-95]
gi|386208931|gb|EII19422.1| ribonuclease D [Escherichia coli 9.0111]
gi|391306041|gb|EIQ63806.1| ribonuclease D [Escherichia coli EPECa12]
gi|431647378|gb|ELJ14862.1| ribonuclease D [Escherichia coli KTE163]
gi|431657895|gb|ELJ24857.1| ribonuclease D [Escherichia coli KTE166]
Length = 371
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
Length = 414
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 11/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYI-VDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ + VD + L L+ L E L + V H A
Sbjct: 50 VAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALGGRLDPLVEAL--EGTEWVLHAA 107
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + R +L L++ +K DW RP
Sbjct: 108 SQDLPCL-AELGLTPSALFDTELAGRLAGFERVALGTLVELLLGYRLEKGHGAADWSRRP 166
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP + YA D L+ + D ++ +L GK L F +R KP
Sbjct: 167 LPADWLNYAALDVELLVQLRDVLEEELRQ--QGKLEWALEEFDAARTA---PLPKP--RA 219
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E + H + + +Q A+R L++ RD +AR++D + G VLP+ L+ A P D
Sbjct: 220 EPWRRTSGIHRIRSTRQLAAVRSLWETRDALARERDLAPGRVLPDSALVDAATRNPADEA 279
Query: 510 GIFA 513
+ A
Sbjct: 280 ALLA 283
>gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5]
gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39]
gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5]
gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39]
Length = 375
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-SDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 291
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 292 QPMLNLM 298
>gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999]
Length = 382
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 130/302 (43%), Gaps = 31/302 (10%)
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P ++I + + Q + QQ IA+D E+ R++ + L+QI ++D + +
Sbjct: 4 PYLLIDSYDALLQYCQQAAQQSVIAVDTEFVRTRTFYPHIGLVQIYDGVDIALIDPIAI- 62
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY- 366
+DL L++++T+ ++KV H D++ + G+ +FDT A + + S+ Y
Sbjct: 63 DDLSPLSQLMTNPQVIKVLHACSEDLETFEFALGVMPEPLFDTQVAAQLAGLG-NSVGYG 121
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM--KLDLSAAAHGK 423
L++ D+ +K DW RPL + YA D YLL Y + KL+ S H
Sbjct: 122 RLVELLQDITLEKGESRTDWIRRPLSPEQLIYAAEDVLYLLPCYFKLAEKLEASQQLHWV 181
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHA--LLNNQQK------YALRELYK 475
+ V R NI HA LL N K YA++ L +
Sbjct: 182 YDEVNQLIRRKRA-----------------NIDPKHAYLLLKNTWKLSPLNLYAMQLLAQ 224
Query: 476 WRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 535
WR AR+ D + ++L + +A +P +FA PQ + H I II
Sbjct: 225 WRLTFAREHDITQNFILREQSMFDIASCLPGHKGALFALDVVTPQEARRHCDTILGIIKT 284
Query: 536 AR 537
AR
Sbjct: 285 AR 286
>gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
Length = 352
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 17/259 (6%)
Query: 251 MITEPEQVTQLVSELKQQ--QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
MI+E E++ + Q + +DLE + YQ CL+Q + ++D L + E
Sbjct: 1 MISEKEELLEWRKRAAAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLSI-E 59
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
D+ L + + HGAD D+ Q + ++DT A + L + LA L+
Sbjct: 60 DMGPFYNWLKETEVW--MHGADYDMSLFQNAWETLPAMIWDTQTAARLLGFRQFGLAALV 117
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+H+ + K+ Q DW RPL + YA D +Y+L + D KL + G+
Sbjct: 118 EHFHGITLSKSSQKADWARRPLSPTMVTYALNDVNYMLDMAD--KLTAALRKKGRMGWF- 174
Query: 429 STFTNSRNICKLKYEKPVFNE-EGYMNIFRSHAL--LNNQQKYALRELYKWRDRIARDKD 485
IC+ E+ G+ + +R LN + ALRE++ WRD A+ D
Sbjct: 175 ------EEICRHSMERARERHLAGHQDPWRIQGCGKLNRKGLAALREMWTWRDAEAKTWD 228
Query: 486 ESTGYVLPNHMLLQMAQSI 504
+ V N L+Q + ++
Sbjct: 229 KPAFMVCSNADLIQWSVAL 247
>gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15]
gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000]
gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15]
gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000]
Length = 389
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 123/271 (45%), Gaps = 28/271 (10%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT ++ + L + +A+D E+ +Y CL+Q+++ ++ ++D L DL
Sbjct: 3 LITTTAELAAFCNGLAGEPFVAVDTEFMRETTYWPKLCLIQVASPTQEAVIDPLADNIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
E L V+ D+ I+KVFH A D++ + + +FDT A Q +AY L+
Sbjct: 63 EPLLVVMRDERILKVFHAARQDVE-IFNNLKAMPKPLFDTQVAGMAAGFGEQ-IAYDALV 120
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ ++ DK+ + DW RPL + + YA D +L ++ ++ L + G+ V
Sbjct: 121 RQMLRIEIDKSSRFTDWARRPLTDAQLSYALADVTHLAKLFPILRERLETS--GRLAWVE 178
Query: 429 STFTNSRNICKLKYE--------KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRI 480
T + + +P Y+ +F++ A WR+R
Sbjct: 179 EEMTAISDPAAYDVDPEKAWRRLRPRKTAPKYLAVFKAVA--------------AWRERT 224
Query: 481 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
A+++D+ G +L + + ++A P +++ +
Sbjct: 225 AQNRDQPRGRILKDEAIDELATQTPGNLEAL 255
>gi|301026544|ref|ZP_07189972.1| ribonuclease D [Escherichia coli MS 69-1]
gi|419916474|ref|ZP_14434780.1| ribonuclease D [Escherichia coli KD2]
gi|432543315|ref|ZP_19780164.1| ribonuclease D [Escherichia coli KTE236]
gi|432548805|ref|ZP_19785579.1| ribonuclease D [Escherichia coli KTE237]
gi|432622002|ref|ZP_19858036.1| ribonuclease D [Escherichia coli KTE76]
gi|300395475|gb|EFJ79013.1| ribonuclease D [Escherichia coli MS 69-1]
gi|388395817|gb|EIL56957.1| ribonuclease D [Escherichia coli KD2]
gi|431074914|gb|ELD82451.1| ribonuclease D [Escherichia coli KTE236]
gi|431080625|gb|ELD87420.1| ribonuclease D [Escherichia coli KTE237]
gi|431159701|gb|ELE60245.1| ribonuclease D [Escherichia coli KTE76]
Length = 371
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPISWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
Length = 392
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I+ EQ+ + + L I +D E+ +Y C++Q+++ D+ +VDTL DL
Sbjct: 3 LISTTEQLADVCTRLASHPVITVDTEFLRETTYYPLLCVVQMASPDEAVVVDTLAPGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ +++ ++N++KVFH A DI+ + G+ +FDT A L S+AY L+
Sbjct: 63 KPFFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQLV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+ DKT + DW RPL + + YA +D +L V+ + DL
Sbjct: 122 ERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADL 169
>gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 str. EDL933]
gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
EDL933]
Length = 375
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTXDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 291
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 292 QPMLNLM 298
>gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
Length = 374
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 13/261 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ S+ ++ ++A+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 LITSDIGLQQVCSQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+ + K H D++ FG DT FL P A L+
Sbjct: 64 APFQALLRDEEVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E YA D YLL + ++L G N L
Sbjct: 124 DYMGVSLDKSESRTDWLARPLSEKQCDYAAADVFYLLPM--AIQLVADTETAGWMNAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+C+ K + P + N ++ L + L+ L +WR R AR++D +
Sbjct: 182 ---ECLLLCQRKQDILAPALAYREFGNAWQ----LRGRNLACLQRLAEWRLRKARERDSA 234
Query: 488 TGYVLPNHMLLQMAQSIPRDI 508
+V+ LLQ+A+ +P +
Sbjct: 235 VNFVVREENLLQVARCLPSSL 255
>gi|388543349|ref|ZP_10146640.1| ribonuclease D [Pseudomonas sp. M47T1]
gi|388278661|gb|EIK98232.1| ribonuclease D [Pseudomonas sp. M47T1]
Length = 377
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + E + + +E ++ +A+D E+ ++ L+QI +++D L +++ +
Sbjct: 8 IRDDESLARHCAEWQRLPYVALDTEFMRVDTFYPIAGLIQIGDGACAWLIDPLSIKQ-WQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L D ++KV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLARLLEDPGVIKVVHACSEDLEVLVRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D++ K DW RPL + I YA D +L VY+ ++ LS + VL
Sbjct: 126 AVLDIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVYEKLRPQLS---DERYTWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + +L+ E + ++R L L+ QQ LREL WR+R AR +D
Sbjct: 183 D--GAELVAQLRREVDPYE------LYRDAKLAWKLSRQQLGVLRELCAWREREARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A++ P ++ + + P+TV++
Sbjct: 235 PRNRIVREHSLWPLARTQPDNLAALAKIEDMHPRTVRQ 272
>gi|417842935|ref|ZP_12489013.1| Ribonuclease D [Haemophilus haemolyticus M21127]
gi|341950811|gb|EGT77396.1| Ribonuclease D [Haemophilus haemolyticus M21127]
Length = 399
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 126/263 (47%), Gaps = 17/263 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ + ++ + + + +A+D E+ +Y L+Q+ ++ ++D L + D
Sbjct: 32 VITDNTSLLEICNLAQMKSTVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAI-TDF 90
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
E+L + N++K+ H D+ ++F M DT +FL + + LA L +
Sbjct: 91 SPFVELLVNPNVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQ 150
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +V+ DK +W RPL + +QYA D YLL +Y ++ +L+ +
Sbjct: 151 QYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWERA----- 205
Query: 430 TFTNSRNICKLKYEKP-----VFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
R+ C+L K +E+ Y++I + LN + LR L +WR + ++
Sbjct: 206 ----VRDDCELALSKTHKLQERDSEKAYLDIPNAWK-LNPLELSRLRILAQWRQNVGIER 260
Query: 485 DESTGYVLPNHMLLQMAQSIPRD 507
D + Y++ + L ++A++ PR+
Sbjct: 261 DLALSYIVKSDNLWKVAKNNPRN 283
>gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
Length = 395
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 136/318 (42%), Gaps = 15/318 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+++T ++ + + L+++ + ID E+ R+Y CL+Q++ + ++DT D
Sbjct: 13 VLVTTTAELEAVTARLRREPFVTIDTEFVRERTYWPELCLVQLAGENDVVVIDTTAPGID 72
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L +L D ++KVFH A D++ F +FDT A Q + Y L
Sbjct: 73 LSSLGGLLDDAGVIKVFHAARQDLEIFLHLFDRLPAALFDTQVAAMVAGYGDQ-VGYDNL 131
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ V DK+ + DW RPL I YA D YL VY + L G+ + V
Sbjct: 132 VWSLLGVQIDKSHRFSDWSVRPLSAAQIGYAAADVTYLRQVYGQLLAQLE--KEGRLDWV 189
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ N + + E+ M S N + LR + WR+ A+ +
Sbjct: 190 AAELDVLNNPATFRPDPLTLWEK--MRPRTS----NRRMLGVLRAIVAWREGEAQRINVP 243
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEK 547
+L + L+++A ++P I+ + A V + E +L+ Q+LT P
Sbjct: 244 RQRLLKDESLMEIAATMPASIEAL-ARVRGVSRGFAEG--RSGQSLLETVAQALTIPDAD 300
Query: 548 LQPSLDGMKKKQQQQVSP 565
L P L + K Q+ SP
Sbjct: 301 L-PRLPKGRAKDAQRPSP 317
>gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
Length = 377
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+QI ++ +++D L L D + L ++L D +VKV H
Sbjct: 27 VALDTEFMRVDTFYPKAGLVQIGDGNQAFLIDPL-LISDWQPLADLLDDSGVVKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVLLRLTGKLPQPLFDTQLAAGYLNIGF-SMGYSRLVQEVLGLELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L ++ ++ LS K VL + + L+ E V
Sbjct: 145 PLSETQVSYAAEDAVHLAELFSALRPRLS---DDKFAWVLDD--GAELVAALRRE--VDP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E Y ++ + L QQ LREL WR+R AR++D +L H L MA+S P +
Sbjct: 198 ETLYRDVKLAWKL-GRQQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPDSL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ P+T+++
Sbjct: 257 PALGRIDEMHPRTIRQ 272
>gi|385652990|ref|ZP_10047543.1| ribonuclease D [Leucobacter chromiiresistens JG 31]
Length = 396
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y G L+Q+ + +++D + + D L + D + FH A
Sbjct: 35 VAVDAERASGFRYGGEAYLVQVHRAEAGTFLIDPIGI-PDFSPLQRAIGDAEWI--FHAA 91
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L GL +FDT A + L R L +++ + +K DW RP
Sbjct: 92 SQDLPCLAS-IGLVPSRIFDTELAARLLGFERVGLGAIVEMLLGIALEKAHSAADWSQRP 150
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP ++YA D L + + L GK F +L+ EKP E
Sbjct: 151 LPAEWLEYAALDVVLLPELRSVIAEQLD--EQGKTEFAAQEF----EAVRLRPEKP-RPE 203
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
E + + SHAL + REL++ RD +AR++D + G ++P+ ++ + + PR
Sbjct: 204 EPWRKLSGSHALKTPRALALARELWEARDALARERDTAPGRLIPDSSIVAASIANPR 260
>gi|398861072|ref|ZP_10616709.1| ribonuclease D [Pseudomonas sp. GM79]
gi|398233675|gb|EJN19587.1| ribonuclease D [Pseudomonas sp. GM79]
Length = 377
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 132/286 (46%), Gaps = 21/286 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 IRDNDSLGQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGVRAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVVKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D K DW RPL + I YA D +L V+ ++ LS K VL
Sbjct: 126 EVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVFVQLRPKLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR+R AR +D
Sbjct: 183 D--GAELVANLRREVDPYE------VYRDAKLAWKLSRAQLAVLRELCAWREREARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
++ H L +A++ P ++ + + P+TV+ E +LD+
Sbjct: 235 PRNRIIREHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDL 280
>gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131]
gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131]
Length = 373
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 16/291 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T ++ Q+ E +A+D E+ R+Y L+Q+ + ++D L L D
Sbjct: 5 LVTTDSELAQVCQEASNAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPL-LMTDF 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+LT+ +K H D++ DF M DT FL P A L+
Sbjct: 64 SPFKALLTNPEQLKFLHAGSEDLEVFMHDFDCVPEPMIDTQVVAAFLGYPISCGFASLVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ ++ DK+ DW RPL E YA D YLL + + + ++ A +
Sbjct: 124 EHLGIELDKSESRTDWLARPLSEKQCDYAAADVLYLLPLAEILMEKVTEAGY-------- 175
Query: 430 TFTNSRNICK---LKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
++++ C+ + +K + E+ YMNI + L ++Q L+ L +WR A+ +D
Sbjct: 176 -LEDAKDECQRVVARRQKALKPEKAYMNIHNAWQ-LRDEQLACLQLLAEWRLNQAKARDM 233
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
+ +V+ L ++A+ +P + G Q ++ H + AI+ +A+
Sbjct: 234 AVNFVVKEEHLWKVARYLPSSL-GELDALGLTGQEIRCHGKRLLAIVEQAK 283
>gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
Length = 386
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 14/252 (5%)
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED------- 309
++T L ++ +A+D E ++ +Y+ CL+Q++ ++VDTL L D
Sbjct: 15 ELTALAQRMRDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALAGDSGEPRAE 74
Query: 310 -LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
L L E L ++ HG + D+ L++DFG+ + G+FDT QA FL R A ++
Sbjct: 75 ALAALAEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLGWSRTGYAAVV 134
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ C+ K + DW RP+ A++YA D +L V ++ + AA +L
Sbjct: 135 EAVCEQKLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELEARIGAA-----DLDE 189
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+ ++ + F+ M + L ++ L +Y+WR+ R+ D
Sbjct: 190 ELAIANASVAAAPAHRSAFDPS-RMWKLKGARDLPAERLPVLAAIYRWREDKGRELDHPP 248
Query: 489 GYVLPNHMLLQM 500
G ++ N L+ +
Sbjct: 249 GRLIANEPLVHL 260
>gi|430003114|emb|CCF18897.1| Ribonuclease D (RNase D) [Rhizobium sp.]
Length = 381
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 19/267 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + ++L Q I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTAALEDACAKLAQSDFITIDTEFLRETTFWPQLCLIQMASPTMEVLVDPLAKGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ D+ ++KVFH A DI+ + L +FDT A C F S++Y
Sbjct: 61 KPFFELMADRKVIKVFHAARQDIEIIHHLGNLVPHPIFDTQVAAMVCGF----GDSVSYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ DKT + DW RPL + ++YA D +L VY +K L G+
Sbjct: 117 QLVQRTTGAHIDKTSRFTDWSRRPLSDKQLEYALADVTHLRDVYAALKAQLE--REGRAG 174
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIARDK 484
T I + + ++ ++ R A L + A+ + + WR+R AR +
Sbjct: 175 W----LTEEMAILESANTYDIHPDDAWL---RLKARLRKPTELAIVKFVAAWREREARSR 227
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ VL + + ++AQ P+D +
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTDAL 254
>gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai]
gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A]
gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869]
gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508]
gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A]
gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22]
gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019]
gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171]
gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11]
gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1]
gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989]
gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026]
gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
gi|291282984|ref|YP_003499802.1| ribonuclease D [Escherichia coli O55:H7 str. CB9615]
gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088]
gi|332279045|ref|ZP_08391458.1| ribonuclease D [Shigella sp. D9]
gi|387507049|ref|YP_006159305.1| ribonuclease D [Escherichia coli O55:H7 str. RM12579]
gi|387882910|ref|YP_006313212.1| ribonuclease D [Escherichia coli Xuzhou21]
gi|407469604|ref|YP_006783953.1| ribonuclease D [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407481732|ref|YP_006778881.1| ribonuclease D [Escherichia coli O104:H4 str. 2011C-3493]
gi|410482281|ref|YP_006769827.1| ribonuclease D [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417149882|ref|ZP_11989800.1| ribonuclease D [Escherichia coli 1.2264]
gi|417265887|ref|ZP_12053256.1| ribonuclease D [Escherichia coli 3.3884]
gi|417667191|ref|ZP_12316739.1| ribonuclease D [Escherichia coli STEC_O31]
gi|417833042|ref|ZP_12479490.1| ribonuclease D [Escherichia coli O104:H4 str. 01-09591]
gi|418941481|ref|ZP_13494808.1| ribonuclease D [Escherichia coli O157:H43 str. T22]
gi|419051338|ref|ZP_13598219.1| ribonuclease D [Escherichia coli DEC3B]
gi|419114942|ref|ZP_13659964.1| ribonuclease D [Escherichia coli DEC5A]
gi|419340063|ref|ZP_13881538.1| ribonuclease D [Escherichia coli DEC12E]
gi|419349836|ref|ZP_13891180.1| ribonuclease D [Escherichia coli DEC13B]
gi|419865549|ref|ZP_14387931.1| ribonuclease D [Escherichia coli O103:H25 str. CVM9340]
gi|419869439|ref|ZP_14391643.1| ribonuclease D [Escherichia coli O103:H2 str. CVM9450]
gi|420269590|ref|ZP_14771963.1| ribonuclease D [Escherichia coli PA22]
gi|420298330|ref|ZP_14800393.1| ribonuclease D [Escherichia coli TW09109]
gi|423711484|ref|ZP_17685793.1| ribonuclease D [Escherichia coli PA31]
gi|424084015|ref|ZP_17820576.1| ribonuclease D [Escherichia coli FDA517]
gi|424090436|ref|ZP_17826464.1| ribonuclease D [Escherichia coli FRIK1996]
gi|424462310|ref|ZP_17912883.1| ribonuclease D [Escherichia coli PA39]
gi|424481035|ref|ZP_17930077.1| ribonuclease D [Escherichia coli TW07945]
gi|424487216|ref|ZP_17935843.1| ribonuclease D [Escherichia coli TW09098]
gi|424520410|ref|ZP_17964604.1| ribonuclease D [Escherichia coli TW14301]
gi|424526319|ref|ZP_17970103.1| ribonuclease D [Escherichia coli EC4421]
gi|424544454|ref|ZP_17986978.1| ribonuclease D [Escherichia coli EC4402]
gi|425168297|ref|ZP_18566843.1| ribonuclease D [Escherichia coli FDA507]
gi|425212007|ref|ZP_18607493.1| ribonuclease D [Escherichia coli PA4]
gi|425243098|ref|ZP_18636478.1| ribonuclease D [Escherichia coli MA6]
gi|425255029|ref|ZP_18647622.1| ribonuclease D [Escherichia coli CB7326]
gi|425329698|ref|ZP_18717665.1| ribonuclease D [Escherichia coli EC1846]
gi|425335863|ref|ZP_18723353.1| ribonuclease D [Escherichia coli EC1847]
gi|425398590|ref|ZP_18781379.1| ribonuclease D [Escherichia coli EC1869]
gi|428971672|ref|ZP_19042091.1| ribonuclease D [Escherichia coli 90.0039]
gi|428990102|ref|ZP_19059149.1| ribonuclease D [Escherichia coli 93.0056]
gi|428995875|ref|ZP_19064556.1| ribonuclease D [Escherichia coli 94.0618]
gi|429020724|ref|ZP_19087299.1| ribonuclease D [Escherichia coli 96.0428]
gi|429032723|ref|ZP_19098329.1| ribonuclease D [Escherichia coli 96.0939]
gi|429044838|ref|ZP_19109605.1| ribonuclease D [Escherichia coli 96.0107]
gi|429050316|ref|ZP_19114919.1| ribonuclease D [Escherichia coli 97.0003]
gi|429061233|ref|ZP_19125300.1| ribonuclease D [Escherichia coli 97.0007]
gi|429826574|ref|ZP_19357710.1| ribonuclease D [Escherichia coli 96.0109]
gi|444974879|ref|ZP_21292061.1| ribonuclease D [Escherichia coli 99.1805]
gi|445045305|ref|ZP_21360597.1| ribonuclease D [Escherichia coli 3.4880]
gi|450215294|ref|ZP_21895514.1| ribonuclease D [Escherichia coli O08]
gi|452968446|ref|ZP_21966673.1| ribonuclease D [Escherichia coli O157:H7 str. EC4009]
gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
Sakai]
gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A]
gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869]
gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508]
gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A]
gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22]
gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019]
gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171]
gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli]
gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli]
gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli]
gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli]
gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli]
gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11]
gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989]
gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1]
gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026]
gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088]
gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9]
gi|340733924|gb|EGR63054.1| ribonuclease D [Escherichia coli O104:H4 str. 01-09591]
gi|374359043|gb|AEZ40750.1| ribonuclease D [Escherichia coli O55:H7 str. RM12579]
gi|375323227|gb|EHS68945.1| ribonuclease D [Escherichia coli O157:H43 str. T22]
gi|377895662|gb|EHU60073.1| ribonuclease D [Escherichia coli DEC3B]
gi|377962147|gb|EHV25610.1| ribonuclease D [Escherichia coli DEC5A]
gi|378189985|gb|EHX50571.1| ribonuclease D [Escherichia coli DEC12E]
gi|378202197|gb|EHX62636.1| ribonuclease D [Escherichia coli DEC13B]
gi|386160894|gb|EIH22699.1| ribonuclease D [Escherichia coli 1.2264]
gi|386231880|gb|EII59227.1| ribonuclease D [Escherichia coli 3.3884]
gi|386796368|gb|AFJ29402.1| ribonuclease D [Escherichia coli Xuzhou21]
gi|388337315|gb|EIL03817.1| ribonuclease D [Escherichia coli O103:H25 str. CVM9340]
gi|388342644|gb|EIL08678.1| ribonuclease D [Escherichia coli O103:H2 str. CVM9450]
gi|390645042|gb|EIN24226.1| ribonuclease D [Escherichia coli FDA517]
gi|390645221|gb|EIN24404.1| ribonuclease D [Escherichia coli FRIK1996]
gi|390715792|gb|EIN88628.1| ribonuclease D [Escherichia coli PA22]
gi|390745970|gb|EIO16745.1| ribonuclease D [Escherichia coli PA31]
gi|390771509|gb|EIO40183.1| ribonuclease D [Escherichia coli PA39]
gi|390796735|gb|EIO64001.1| ribonuclease D [Escherichia coli TW07945]
gi|390808520|gb|EIO75359.1| ribonuclease D [Escherichia coli TW09109]
gi|390809799|gb|EIO76581.1| ribonuclease D [Escherichia coli TW09098]
gi|390849042|gb|EIP12490.1| ribonuclease D [Escherichia coli TW14301]
gi|390852205|gb|EIP15374.1| ribonuclease D [Escherichia coli EC4421]
gi|390873705|gb|EIP34886.1| ribonuclease D [Escherichia coli EC4402]
gi|397785438|gb|EJK96288.1| ribonuclease D [Escherichia coli STEC_O31]
gi|406777443|gb|AFS56867.1| ribonuclease D [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407054029|gb|AFS74080.1| ribonuclease D [Escherichia coli O104:H4 str. 2011C-3493]
gi|407065639|gb|AFS86686.1| ribonuclease D [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408084419|gb|EKH18191.1| ribonuclease D [Escherichia coli FDA507]
gi|408129570|gb|EKH59789.1| ribonuclease D [Escherichia coli PA4]
gi|408163257|gb|EKH91124.1| ribonuclease D [Escherichia coli MA6]
gi|408176807|gb|EKI03640.1| ribonuclease D [Escherichia coli CB7326]
gi|408249490|gb|EKI71420.1| ribonuclease D [Escherichia coli EC1846]
gi|408259974|gb|EKI81109.1| ribonuclease D [Escherichia coli EC1847]
gi|408323550|gb|EKJ39512.1| ribonuclease D [Escherichia coli EC1869]
gi|427229639|gb|EKV97953.1| ribonuclease D [Escherichia coli 90.0039]
gi|427244783|gb|EKW12092.1| ribonuclease D [Escherichia coli 93.0056]
gi|427247640|gb|EKW14692.1| ribonuclease D [Escherichia coli 94.0618]
gi|427278708|gb|EKW43164.1| ribonuclease D [Escherichia coli 96.0428]
gi|427285085|gb|EKW49088.1| ribonuclease D [Escherichia coli 96.0939]
gi|427301417|gb|EKW64279.1| ribonuclease D [Escherichia coli 96.0107]
gi|427302221|gb|EKW65057.1| ribonuclease D [Escherichia coli 97.0003]
gi|427317776|gb|EKW79667.1| ribonuclease D [Escherichia coli 97.0007]
gi|429255191|gb|EKY39526.1| ribonuclease D [Escherichia coli 96.0109]
gi|444598183|gb|ELV73119.1| ribonuclease D [Escherichia coli 99.1805]
gi|444662771|gb|ELW35023.1| ribonuclease D [Escherichia coli 3.4880]
gi|449318943|gb|EMD09000.1| ribonuclease D [Escherichia coli O08]
Length = 375
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 291
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 292 QPMLNLM 298
>gi|415791626|ref|ZP_11495398.1| ribonuclease D [Escherichia coli EPECa14]
gi|417298693|ref|ZP_12085931.1| ribonuclease D [Escherichia coli 900105 (10e)]
gi|419209666|ref|ZP_13752756.1| ribonuclease D [Escherichia coli DEC8C]
gi|419255016|ref|ZP_13797539.1| ribonuclease D [Escherichia coli DEC10A]
gi|419261222|ref|ZP_13803650.1| ribonuclease D [Escherichia coli DEC10B]
gi|419267129|ref|ZP_13809490.1| ribonuclease D [Escherichia coli DEC10C]
gi|419272731|ref|ZP_13815033.1| ribonuclease D [Escherichia coli DEC10D]
gi|323152955|gb|EFZ39224.1| ribonuclease D [Escherichia coli EPECa14]
gi|378055531|gb|EHW17793.1| ribonuclease D [Escherichia coli DEC8C]
gi|378102058|gb|EHW63742.1| ribonuclease D [Escherichia coli DEC10A]
gi|378108553|gb|EHW70166.1| ribonuclease D [Escherichia coli DEC10B]
gi|378113001|gb|EHW74574.1| ribonuclease D [Escherichia coli DEC10C]
gi|378118107|gb|EHW79616.1| ribonuclease D [Escherichia coli DEC10D]
gi|386257732|gb|EIJ13215.1| ribonuclease D [Escherichia coli 900105 (10e)]
Length = 371
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 15/315 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGMKKKQQQQV 563
QP L+ M ++V
Sbjct: 288 QPMLNLMDMPGYRKV 302
>gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
gi|417591941|ref|ZP_12242640.1| ribonuclease D [Escherichia coli 2534-86]
gi|419170360|ref|ZP_13714250.1| ribonuclease D [Escherichia coli DEC7A]
gi|419197187|ref|ZP_13740580.1| ribonuclease D [Escherichia coli DEC8A]
gi|419203470|ref|ZP_13746669.1| ribonuclease D [Escherichia coli DEC8B]
gi|419892281|ref|ZP_14412308.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9570]
gi|419897136|ref|ZP_14416729.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9574]
gi|420091400|ref|ZP_14603147.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9602]
gi|420093817|ref|ZP_14605452.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9634]
gi|424770315|ref|ZP_18197520.1| ribonuclease D [Escherichia coli O111:H8 str. CFSAN001632]
gi|427804934|ref|ZP_18972001.1| RNase D, processes tRNA precursor [Escherichia coli chi7122]
gi|427809491|ref|ZP_18976556.1| RNase D, processes tRNA precursor [Escherichia coli]
gi|443617881|ref|YP_007381737.1| ribonuclease D [Escherichia coli APEC O78]
gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
gi|345340601|gb|EGW73019.1| ribonuclease D [Escherichia coli 2534-86]
gi|378016591|gb|EHV79471.1| ribonuclease D [Escherichia coli DEC7A]
gi|378048499|gb|EHW10853.1| ribonuclease D [Escherichia coli DEC8A]
gi|378051452|gb|EHW13769.1| ribonuclease D [Escherichia coli DEC8B]
gi|388348060|gb|EIL13694.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9570]
gi|388355714|gb|EIL20536.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9574]
gi|394382985|gb|EJE60593.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9602]
gi|394398330|gb|EJE74517.1| ribonuclease D [Escherichia coli O111:H8 str. CVM9634]
gi|412963116|emb|CCK47034.1| RNase D, processes tRNA precursor [Escherichia coli chi7122]
gi|412969670|emb|CCJ44308.1| RNase D, processes tRNA precursor [Escherichia coli]
gi|421942513|gb|EKT99840.1| ribonuclease D [Escherichia coli O111:H8 str. CFSAN001632]
gi|443422389|gb|AGC87293.1| ribonuclease D [Escherichia coli APEC O78]
Length = 375
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 291
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 292 QPMLNLM 298
>gi|156933634|ref|YP_001437550.1| ribonuclease D [Cronobacter sakazakii ATCC BAA-894]
gi|156531888|gb|ABU76714.1| hypothetical protein ESA_01456 [Cronobacter sakazakii ATCC BAA-894]
Length = 369
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q F + DT F+ P A L++
Sbjct: 60 APFQALLQDQNVTKFLHAGSEDLEVFQNAFSMMPDPFIDTQVLASFVGHPLSCGFATLVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 120 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-------- 171
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 172 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 229
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 230 AVNFVVREENLWKVARHMPGSL 251
>gi|432861932|ref|ZP_20086692.1| ribonuclease D [Escherichia coli KTE146]
gi|431405679|gb|ELG88912.1| ribonuclease D [Escherichia coli KTE146]
Length = 371
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 136/307 (44%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + +T L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALTSLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-SDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G +
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----IP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA Q+L P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKA--QAL--PEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|398863884|ref|ZP_10619426.1| ribonuclease D [Pseudomonas sp. GM78]
gi|398246299|gb|EJN31795.1| ribonuclease D [Pseudomonas sp. GM78]
Length = 377
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 21/286 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + + +E +Q +A+D E+ ++ L+Q+ ++ Y++D L + ++ +
Sbjct: 8 IRDNDSLGRFCTEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGERAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D K DW RPL E I YA D +L V+ ++ LS K VL
Sbjct: 126 EVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVKLRPQLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E F ++R L L+ Q LREL WR++ AR +D
Sbjct: 183 D--GAELVANLRREIDPFE------VYRDAKLAWKLSRAQLAVLRELCAWREQEARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
++ H L +A++ P ++ + + P+TV+ E +LD+
Sbjct: 235 PRNRIIREHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDL 280
>gi|29828773|ref|NP_823407.1| ribonuclease D [Streptomyces avermitilis MA-4680]
gi|29605878|dbj|BAC69942.1| putative ribonuclease D [Streptomyces avermitilis MA-4680]
Length = 426
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I + + ++++ +A+D E + Y L+Q+
Sbjct: 33 EPREGIP------PVIADDASLAEVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRE 86
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L E ++ + V H A D+ L ++ G+ +FDT A
Sbjct: 87 GAGTALIDPVAC-PDLSGLGEAIS--GVEWVLHAATQDLPCL-REIGMVPTRLFDTELAG 142
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L +++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 143 RLAGFPRVGLGAMVESVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 202
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F + + K + M H + +Q +REL+
Sbjct: 203 ELD--RQGKLEWAQQEFDAIASAPPPEPRKDPWRRTSGM-----HKVRRRRQMAVVRELW 255
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ RDRIA+ +D S G VL + +++ A ++P + + A
Sbjct: 256 ETRDRIAQRRDVSPGKVLGDTAIVEAALALPANTHALAA 294
>gi|432602323|ref|ZP_19838567.1| ribonuclease D [Escherichia coli KTE66]
gi|431140897|gb|ELE42662.1| ribonuclease D [Escherichia coli KTE66]
Length = 371
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-SDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQSEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|395500119|ref|ZP_10431698.1| ribonuclease D [Pseudomonas sp. PAMC 25886]
gi|421139416|ref|ZP_15599455.1| Ribonuclease D [Pseudomonas fluorescens BBc6R8]
gi|404509332|gb|EKA23263.1| Ribonuclease D [Pseudomonas fluorescens BBc6R8]
Length = 377
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 130/278 (46%), Gaps = 18/278 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 ICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPLTI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + ++KV H D++ L + G V +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
D++ K DW RPL E I YA D +L VY ++ LS K VL
Sbjct: 126 AVLDIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPKLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR++ AR +D
Sbjct: 183 D--GAELVANLRREVDPYE------VYRDAKLAWKLSRAQLAVLRELCAWREQQARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
++ H L +A+S P ++ + + P+TV++
Sbjct: 235 PRNRIIREHSLWPLAKSQPDNLAALGKIEDMHPRTVRQ 272
>gi|425305345|ref|ZP_18695088.1| ribonuclease D [Escherichia coli N1]
gi|408229538|gb|EKI52967.1| ribonuclease D [Escherichia coli N1]
Length = 371
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALVSLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDIINAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA Q+L P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKA--QAL--PEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|386020022|ref|YP_005938046.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
Length = 374
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 133/287 (46%), Gaps = 12/287 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + + +L +E +Q +A+D E+ ++ L+Q+ + Y++D L +R D
Sbjct: 8 VVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVR-DWH 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
++ K DW RPL E ++YA D +L +Y+ + LS K+ VL
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLS---DDKRAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E EE Y + ++ L QQ L+ L WR+R AR +++
Sbjct: 183 --DGAELVANLQRESD--PEEAYREVKQAWR-LKPQQLAVLKVLTAWRERQARARNQPRN 237
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536
VL L +A++ P D+ + P+TV++ + A+I +A
Sbjct: 238 RVLREASLWPLARTQPCDLVTLARIDEMHPRTVRQDGEALLAMIREA 284
>gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT]
gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT]
Length = 381
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 9/257 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT +++ ++ + +Q+ IA+D E+ +S+ L+Q+ ++ ++D +L D
Sbjct: 16 LITTNDRLYEICQQAQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPFEL-SDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L ++ + KV H D++ Q F M DT FL LA LLK
Sbjct: 75 SPFIQLLANQKVTKVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQHGNSIGLAILLK 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
HY ++ DK +W RPL + + YA D YLL +Y M+ L+ + Q+ V +
Sbjct: 135 HYFKLEIDKGISRTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSW--QSAVQN 192
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
N N KY + ++ Y +I + LN+Q+ L+ L KWR A ++ +
Sbjct: 193 DCENLLN----KYTQIKDSDNAYFSISGAWK-LNSQELMRLKLLAKWRQEEAIKRNLALN 247
Query: 490 YVLPNHMLLQMAQSIPR 506
+V+ L+ +AQ P+
Sbjct: 248 FVVRAEHLILLAQHNPK 264
>gi|443623302|ref|ZP_21107803.1| putative ribonuclease D [Streptomyces viridochromogenes Tue57]
gi|443343126|gb|ELS57267.1| putative ribonuclease D [Streptomyces viridochromogenes Tue57]
Length = 392
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQE-IAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I + + ++++ +A+D E + Y L+Q+
Sbjct: 3 EPREGIP------PVIADEAALAEVIAAFTAGSGPVAVDAERASGYRYGQRAYLVQLRRE 56
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L E L+ + V H A D+ L ++ G+ +FDT A
Sbjct: 57 GAGSALIDPVAC-PDLSGLGEALS--GVEWVLHAATQDLPCL-REIGMVPTLLFDTELAG 112
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L +++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 113 RLAGFPRVGLGAMVESVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 172
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F + K + M H + +Q +REL+
Sbjct: 173 ELD--RQGKLEWAREEFAAIAAAPPAEPRKDPWRRTSGM-----HKVRRRRQLAVVRELW 225
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ RDRIA+ +D S G VL + +++ A ++P ++ + A
Sbjct: 226 QTRDRIAQKRDVSPGKVLSDAAIVEAALAMPGNVHALAA 264
>gi|398925909|ref|ZP_10662148.1| ribonuclease D [Pseudomonas sp. GM48]
gi|398171503|gb|EJM59405.1| ribonuclease D [Pseudomonas sp. GM48]
Length = 377
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 133/286 (46%), Gaps = 21/286 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + +L +E +Q +A+D E+ ++ L+Q+ ++ Y++D L + ++ +
Sbjct: 8 IRDNDSLGRLCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGERAYLIDPLSI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PFAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D K DW RPL E I YA D +L V+ ++ LS K VL
Sbjct: 126 EVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVKLRPKLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR++ AR +D
Sbjct: 183 D--GAELVANLRRETDPYE------VYREAKLAWKLSRAQLAVLRELCAWREKEARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
++ H L +A++ P ++ + + P+TV+ E +LD+
Sbjct: 235 PRNRIIREHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDL 280
>gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1]
gi|421524076|ref|ZP_15970703.1| ribonuclease D [Pseudomonas putida LS46]
gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1]
gi|402752321|gb|EJX12828.1| ribonuclease D [Pseudomonas putida LS46]
Length = 377
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+QI + +++D L L + + L ++L D +VKV H
Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL-LIGNWQPLADLLEDSGVVKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L ++ ++ LS K VL + + L+ E V
Sbjct: 145 PLSETQVSYAAEDAVHLAELFTVLRPRLS---DDKYAWVLED--GAELVAALRRE--VEP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E Y ++ + L QQ LREL WR+R AR++D +L H L MA+S P ++
Sbjct: 198 ESLYRDVKLAWKL-APQQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ P+T+++
Sbjct: 257 SALAKIDEMHPRTIRQ 272
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ LREL WR+R AR++D +L H L MA+S P ++ + P+T+++
Sbjct: 213 QQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQ 272
>gi|383831224|ref|ZP_09986313.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
gi|383463877|gb|EID55967.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
Length = 413
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 110/265 (41%), Gaps = 11/265 (4%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIV 301
P TP ++ E + +A+D E + Y L+QI +++
Sbjct: 22 PAEGTPDVIADSGELRAACARLAEGSGALAVDTERASGYRYWPKAYLVQIRREGAGTFLI 81
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D + LR+ L L EV+ ++ V H A D+ L + GL +FDT A + R
Sbjct: 82 DPIPLRDQLAPLAEVM--NSVEWVLHAASQDLPCL-AELGLRPPSLFDTELAGRLAGYQR 138
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
+L L++ +K DW RPLP + YA D L+ + KL+ AA
Sbjct: 139 VALGTLVESLLGYRLEKGHSAADWSRRPLPVEWLNYAALDVELLVPLR--AKLEAELAAS 196
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
GK + F R E P E + H + + A+R L++ RD +A
Sbjct: 197 GKLDWAYQEFEAVRTA-----EPPGPRAEPWRRTSGIHKIRTARGLAAVRALWEERDELA 251
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPR 506
R +D + G +LP+ ++ + PR
Sbjct: 252 RRRDRAPGRILPDSAIVNAVLADPR 276
>gi|429086966|ref|ZP_19149698.1| Ribonuclease D [Cronobacter universalis NCTC 9529]
gi|426506769|emb|CCK14810.1| Ribonuclease D [Cronobacter universalis NCTC 9529]
Length = 332
Score = 82.8 bits (203), Expect = 9e-13, Method: Composition-based stats.
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 17/260 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q FG+ DT F+ P A L++
Sbjct: 64 APFQALLQDQNVNKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + AH V
Sbjct: 124 HHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPI-----------AHKLMEQVRD 172
Query: 430 T--FTNSRNICKLKYEK--PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
T + N C+L ++ V + + + L +Q L+ L WR R AR++D
Sbjct: 173 AGWLTAAINECRLMTQRRGEVLDPDEAWREITNAWQLRPRQLACLKLLAGWRLRKARERD 232
Query: 486 ESTGYVLPNHMLLQMAQSIP 505
+ +V+ L ++A+ +P
Sbjct: 233 MAVNFVVREENLWKVARVMP 252
>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
Length = 381
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 13/259 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT +++ ++ + +Q+ IA+D E+ +S+ L+Q+ ++ ++D +L D
Sbjct: 16 LITTNDRLYEICQQAQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPFEL-NDF 74
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
++L ++ + KV H D++ Q F M DT FL LA LLK
Sbjct: 75 SPFIQLLANQKVTKVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQHGNSIGLATLLK 134
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM--KLDLSAAAHGKQNLV 427
HY ++ DK +W RPL + + YA D YLL +Y M KL ++ QN
Sbjct: 135 HYFKLEIDKGISRTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQN-- 192
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
+ N+ K KY + + Y +I + LN+Q+ L+ L KWR A ++ +
Sbjct: 193 -----DCENLLK-KYTQIKDSNNAYFSISGAWK-LNSQELMRLKLLAKWRQEEAIKRNLA 245
Query: 488 TGYVLPNHMLLQMAQSIPR 506
+V+ L+ +AQ P+
Sbjct: 246 LNFVIRAEHLILLAQHNPK 264
>gi|440793720|gb|ELR14896.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 317
Score = 82.8 bits (203), Expect = 9e-13, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 121/263 (46%), Gaps = 10/263 (3%)
Query: 251 MITEPEQVTQLVSE-LKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ITEP QV + + + Q +AID E + YQ CL+Q++ + DT+ L +
Sbjct: 6 LITEPHQVADVAERFVAKAQWLAIDTESNILFVYQPRVCLIQMNVEGVLLVFDTMALMQA 65
Query: 310 ----LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLA 365
LE L L D + HGA +D+ ++DF + + G+FDT +A + + +
Sbjct: 66 DPLALEPLRPYLEDGQRLIFAHGAANDVSTFKRDFDISLNGLFDTQRAAQLAGLAHTNYG 125
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
+++ V K + ++W RP+ ++YA D YL V ++ + ++
Sbjct: 126 AVVESLLSVSLSKDYTHYNWGLRPIELEPLRYALEDVVYLPQVGHMLRARVQELGVEEEL 185
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
+ +R + + ++ ++ R L+ Q + L+ WRD AR+ D
Sbjct: 186 AAV-----NRMLMAMPSHPRRLDDLALVHSIRGTGNLDPVQLGVMGALFLWRDAKAREFD 240
Query: 486 ESTGYVLPNHMLLQMAQSIPRDI 508
G V+ N L+++A+++ ++
Sbjct: 241 RPCGSVISNERLVKIARALDPNV 263
>gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
gi|419215699|ref|ZP_13758706.1| ribonuclease D [Escherichia coli DEC8D]
gi|419878074|ref|ZP_14399553.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9534]
gi|419882175|ref|ZP_14403431.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9545]
gi|419903117|ref|ZP_14422232.1| ribonuclease D [Escherichia coli O26:H11 str. CVM9942]
gi|419909224|ref|ZP_14427836.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10026]
gi|420109063|ref|ZP_14619251.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9553]
gi|420118163|ref|ZP_14627498.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10021]
gi|420121886|ref|ZP_14630929.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10030]
gi|420129151|ref|ZP_14637691.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10224]
gi|420134076|ref|ZP_14642223.1| ribonuclease D [Escherichia coli O26:H11 str. CVM9952]
gi|422010710|ref|ZP_16357660.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9455]
gi|424752060|ref|ZP_18180066.1| ribonuclease D [Escherichia coli O26:H11 str. CFSAN001629]
gi|424756046|ref|ZP_18183883.1| ribonuclease D [Escherichia coli O111:H11 str. CFSAN001630]
gi|425379560|ref|ZP_18763672.1| ribonuclease D [Escherichia coli EC1865]
gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
gi|378063558|gb|EHW25726.1| ribonuclease D [Escherichia coli DEC8D]
gi|388336405|gb|EIL02949.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9534]
gi|388362551|gb|EIL26551.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9545]
gi|388372515|gb|EIL35936.1| ribonuclease D [Escherichia coli O26:H11 str. CVM9942]
gi|388373513|gb|EIL36782.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10026]
gi|394383650|gb|EJE61243.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10224]
gi|394393646|gb|EJE70310.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9455]
gi|394401122|gb|EJE76975.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10021]
gi|394407978|gb|EJE82711.1| ribonuclease D [Escherichia coli O111:H11 str. CVM9553]
gi|394422970|gb|EJE96269.1| ribonuclease D [Escherichia coli O26:H11 str. CVM9952]
gi|394424453|gb|EJE97583.1| ribonuclease D [Escherichia coli O26:H11 str. CVM10030]
gi|408298352|gb|EKJ16295.1| ribonuclease D [Escherichia coli EC1865]
gi|421938349|gb|EKT95923.1| ribonuclease D [Escherichia coli O26:H11 str. CFSAN001629]
gi|421949856|gb|EKU06766.1| ribonuclease D [Escherichia coli O111:H11 str. CFSAN001630]
Length = 375
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 291
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 292 QPMLNLM 298
>gi|197285028|ref|YP_002150900.1| ribonuclease D [Proteus mirabilis HI4320]
gi|425067962|ref|ZP_18471078.1| ribonuclease D [Proteus mirabilis WGLW6]
gi|425072637|ref|ZP_18475743.1| ribonuclease D [Proteus mirabilis WGLW4]
gi|194682515|emb|CAR42495.1| ribonuclease D [Proteus mirabilis HI4320]
gi|404596842|gb|EKA97359.1| ribonuclease D [Proteus mirabilis WGLW4]
gi|404600700|gb|EKB01130.1| ribonuclease D [Proteus mirabilis WGLW6]
Length = 372
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 12/257 (4%)
Query: 253 TEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV 312
T E V + SE+ Q IA+D E+ R+Y + L+Q+ + ++D L + E
Sbjct: 10 TALEDVCKAASEVSQ---IALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLTITEWTPF 66
Query: 313 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHY 371
+ E+LT+ ++K H D++ FG M DT FL P A L++ Y
Sbjct: 67 V-ELLTNPAVLKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFLGYPISCGFATLVEKY 125
Query: 372 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
+ DK+ DW RPL E QYA D YLL L A ++ +
Sbjct: 126 EHIALDKSESRTDWLARPLTEKQCQYASGDVFYLL------PLAKKLIAQAQEAGYMDAI 179
Query: 432 TNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYV 491
+ + + ++ V E Y +I + L QQ L+ L +WR AR +D + +V
Sbjct: 180 VDECEMIAERRQETVSPELAYRDIGNAWQ-LRGQQLACLKMLAEWRLNQARARDMALNFV 238
Query: 492 LPNHMLLQMAQSIPRDI 508
+ L +A+ +P +
Sbjct: 239 VREEHLWSVARYLPTSL 255
>gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121]
gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121]
Length = 431
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 11/242 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ +++D + +DL+ L EV+ + V H A
Sbjct: 51 LAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQPLAEVI--NPLQWVLHSA 108
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D D+ L + GL +FDT A + R LA +++ V+ K DW RP
Sbjct: 109 DQDLPGL-AELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAADWSTRP 167
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+ + YA D LL + D M+ +L + GK F R K + +
Sbjct: 168 LPDAWLNYAALDVEVLLELRDAMEAELE--SQGKLEWAKEEFEYIRLAGPPKPKPDRWRR 225
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
++ +L +Q A+R L++ R+ +AR +D S VLP+ ++ A PR +
Sbjct: 226 TSHIT-----SLKTTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAIIDAALKDPRSLD 280
Query: 510 GI 511
+
Sbjct: 281 AL 282
>gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4]
gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4]
Length = 428
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 16/288 (5%)
Query: 233 LKCEEP-KQALPL---SDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYT 287
+ EEP +Q +PL D ++T E V + + L + +A+D E + Y
Sbjct: 12 VPAEEPGRQVVPLLAPRDGVPDVVTTAEGVAKAAAALSEGTGPLAVDAERASGFRYSARA 71
Query: 288 CLMQISTRDKDYIV-DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 346
L+Q+ ++ D + DL L EV+ + + H AD D+ L + GL
Sbjct: 72 YLVQLRREGAGTVLLDPIPTAADLAPLAEVI--NPLEWILHSADQDLPGL-AEIGLAPAT 128
Query: 347 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+FDT A + R LA +++ + K DW RPLP+ + YA D L+
Sbjct: 129 LFDTELAGRLAGFERVGLAAIVERTLGFELRKGHGAADWSKRPLPDTWLNYAALDVEVLV 188
Query: 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQ 466
+ + M +L GK + F + R + KP + + +L +Q
Sbjct: 189 ELRNAMAAELG--EQGKSDWAAQEFEHIR-LAGPPRPKP----DRWRRTSHITSLKTQRQ 241
Query: 467 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
A+R L++ R+ +AR +D S VLP+ ++ A PR I+ + A
Sbjct: 242 LAAVRSLWQAREDLARKRDVSPSRVLPDSAIIDAATKDPRSIEALRAL 289
>gi|377562762|ref|ZP_09792130.1| ribonuclease D [Gordonia sputi NBRC 100414]
gi|377530059|dbj|GAB37295.1| ribonuclease D [Gordonia sputi NBRC 100414]
Length = 426
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 11/236 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQIS-TRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ T +++D + E L + E L V H A
Sbjct: 51 VAVDTERASGYRYSQRAYLVQLRRTGSGSFLLDPISEPETLAPVIEALDGPEWV--LHAA 108
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D D+ L ++ G +FDT A + L P+ +LA ++ Y ++ K DW RP
Sbjct: 109 DQDLPCL-RELGFRCETVFDTELAGRLLGEPKVNLAAMVATYLELGLQKGHGAADWSRRP 167
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+ + YA D L+ + D ++ L GK F R + L P
Sbjct: 168 LPDDWLNYAALDVEVLVELRDAVQQAL--VEQGKDEWARQEF---RYV--LDRPAPAPRV 220
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIP 505
+ + H + N++ A+REL+ R+ +A+ +D + G +LP+ ++ A ++P
Sbjct: 221 DKWRRTANVHTVKNSRSLAAVRELWAAREELAQRRDVAPGRILPDSAIVTAANAMP 276
>gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107]
gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107]
Length = 378
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 27/313 (8%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+ I +Q+ +L +QQ IA+D E+ ++ L+QI Y++D L + D
Sbjct: 8 IWIERADQLAELCVGWRQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAI-AD 66
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
+ L E+L D ++KV H D++ Q+ L +FDT F + L Y L
Sbjct: 67 WQPLRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGF-GLGYANL 125
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+K ++ K DW RPL + ++YA D ++L VY GK +
Sbjct: 126 VKTLLGIEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVY------------GKLLQI 173
Query: 428 LST---FTNSRNICKLKYEK---PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
L T ++ C E+ P ++ Y + + L Q+ LR+L WR+ A
Sbjct: 174 LKTSQRLEWVKSDCADLVEQARAPDHFDDAYQKVGFAWK-LRPQELAVLRQLCIWRETQA 232
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS- 540
R +D ++ L +A+ PRD+Q + + +PQ + + I K++L+S
Sbjct: 233 RQRDIPRNRLIKEPSLWDIARKKPRDLQQLQQIAD-IPQRTLRNDGETLLAITKSQLESE 291
Query: 541 -LTKPVEKLQPSL 552
T P E+L P L
Sbjct: 292 PSTWP-ERLDPPL 303
>gi|416897723|ref|ZP_11927371.1| ribonuclease D [Escherichia coli STEC_7v]
gi|417115558|ref|ZP_11966694.1| ribonuclease D [Escherichia coli 1.2741]
gi|422799089|ref|ZP_16847588.1| ribonuclease D [Escherichia coli M863]
gi|323968571|gb|EGB63977.1| ribonuclease D [Escherichia coli M863]
gi|327252925|gb|EGE64579.1| ribonuclease D [Escherichia coli STEC_7v]
gi|386140977|gb|EIG82129.1| ribonuclease D [Escherichia coli 1.2741]
Length = 371
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLVI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
Length = 403
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 12/285 (4%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIV 301
P P ++ T PE + + + +A+D E + Y G L+Q+ ++
Sbjct: 12 PRDGIPPVIETWPELSAAVDAFARGTGPVAMDAERASGYRYSGRAYLVQLRREGAGTALI 71
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D + DL L+ VL D IV H A D+ L + G +FDT A + L R
Sbjct: 72 DPVAC-PDLGELDRVLADAEIV--LHAATQDLPCL-AELGFRPRRLFDTELAARLLGYER 127
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
LA +++ + +K DW RPLPE ++YA D L+ + D + L
Sbjct: 128 VGLATMVEVVLGLRLEKGHSAADWSRRPLPEDWLRYAALDVEVLVELRDALYEQL--VES 185
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIA 481
GK L F I P + + H + + + +REL+ RD IA
Sbjct: 186 GKLEWALEEFA---AILSAPASPP--KSDPWRRTSGIHRVRSLRGLAIVRELWTLRDEIA 240
Query: 482 RDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
R+ D + G VLP+ ++Q A PR + + ++ + H+
Sbjct: 241 READLAPGRVLPDSAIVQAALEQPRTTKALTEITAFTGRSARRHL 285
>gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24]
gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24]
Length = 428
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQIS-T 294
EP++ +P +I + + + ++ + +A+D E + Y L+Q+
Sbjct: 37 EPREGIP------PVIADADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRA 90
Query: 295 RDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L + D V H A D+ L ++ G+ +FDT A
Sbjct: 91 GAGSALIDPVAC-PDLSGLGAAIADAEWV--LHAATQDLPCL-REIGMVPTRIFDTELAG 146
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 147 RLAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 206
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F + + K + M H + +Q +REL+
Sbjct: 207 ELD--RQGKLEWARQEFDAIASAPPAEPRKDPWRRTSGM-----HKVRRRRQLAVVRELW 259
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ RDRIA+ +D S G VL + +++ A ++P + + A
Sbjct: 260 QARDRIAQRRDVSPGKVLGDAAIVEAALALPPNAHALAA 298
>gi|424852269|ref|ZP_18276666.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666934|gb|EHI47005.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 429
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 123/286 (43%), Gaps = 16/286 (5%)
Query: 235 CEEP-KQALPL---SDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCL 289
EEP +Q +PL D ++T E V + + L + +A+D E + Y L
Sbjct: 14 AEEPGRQIVPLLAPRDGVPDVVTTAEGVAKAAAALSEGTGPLAVDAERASGFRYSARAYL 73
Query: 290 MQISTRDKDYIV-DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
+Q+ ++ D + DL L EV+ + + H AD D+ L + GL +F
Sbjct: 74 VQLRREGAGTVLLDPIPTAADLAPLAEVI--NPLEWILHSADQDLPGL-AEIGLAPATLF 130
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT A + R LA +++ ++ K DW RPLP+ + YA D L+ +
Sbjct: 131 DTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSKRPLPDSWLNYAALDVEVLVEL 190
Query: 409 YDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY 468
+ M +L GK F + R K + + ++ ++ +Q
Sbjct: 191 RNVMAAELD--EQGKSGWAAQEFEHIRLAGPPKPKADRWRRTSHITSLKTQ-----RQLA 243
Query: 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFAC 514
A R L++ R+ +AR +D S VLP+ ++ A PR I+ + A
Sbjct: 244 AARSLWQAREDLARKRDVSPSRVLPDSAIIDAATKDPRSIEALRAL 289
>gi|417827740|ref|ZP_12474303.1| ribonuclease D [Shigella flexneri J1713]
gi|335575573|gb|EGM61850.1| ribonuclease D [Shigella flexneri J1713]
Length = 371
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 135/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A+G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEAYGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P + L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEDALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376274500|ref|YP_005114939.1| ribonuclease D [Brucella canis HSK A52141]
gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363403067|gb|AEW13362.1| ribonuclease D [Brucella canis HSK A52141]
Length = 382
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 124/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + V L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|399043184|ref|ZP_10737609.1| ribonuclease D [Rhizobium sp. CF122]
gi|398058431|gb|EJL50329.1| ribonuclease D [Rhizobium sp. CF122]
Length = 381
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI + EL + + I ID E+ ++ CL+Q+++ + +VD L DL
Sbjct: 1 MIETTADLEAACKELAKSEFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+ E++ + ++KVFH A DI+ + GL +FDT A C F S++Y
Sbjct: 61 KPFFELMANPAVLKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVCGF----GDSVSYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+ V DK+ + DW RPL E + YA D +L VY +K +L
Sbjct: 117 QLVNRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLYLKAELEREGRS--- 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S +I + + + ++ + + L Q+ L+ + WR+R AR ++
Sbjct: 174 ---SWLREEMDILEARETYDMHPDDAWQRL--KMRLRKPQELAILKYVAAWREREARSRN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
VL + + ++AQ P+D + +
Sbjct: 229 VPRSRVLKDDAIYEVAQQQPKDAEAL 254
>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|376280430|ref|YP_005154436.1| ribonuclease D [Brucella suis VBI22]
gi|384224424|ref|YP_005615588.1| ribonuclease D [Brucella suis 1330]
gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|343382604|gb|AEM18096.1| ribonuclease D [Brucella suis 1330]
gi|358258029|gb|AEU05764.1| ribonuclease D [Brucella suis VBI22]
Length = 385
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 124/269 (46%), Gaps = 19/269 (7%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + + V L + + +D E+ ++ CL+Q+++ D +VD L
Sbjct: 1 MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL ++ D+ IVKVFH A DI+ + L +FDT A C F +++
Sbjct: 61 DLAPFFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVCGF----GDAIS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
Y L++ DK+ + DWR RPL + + YA D YL +Y +K +L G+
Sbjct: 117 YDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQ--KEGR 174
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYAL-RELYKWRDRIAR 482
V + + + ++ + R A + + A+ + + WR+R AR
Sbjct: 175 SEWV----NEEMAVLTARQTYDLHPDDAWR---RVKARVRKPLELAIVQAVAAWREREAR 227
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+++ G ++ + + ++AQ PRD + +
Sbjct: 228 ERNVPRGRIIKDDTIAEIAQQQPRDAEAL 256
>gi|417167999|ref|ZP_12000621.1| ribonuclease D [Escherichia coli 99.0741]
gi|386171025|gb|EIH43073.1| ribonuclease D [Escherichia coli 99.0741]
Length = 371
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALLEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
Length = 418
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 99/237 (41%), Gaps = 12/237 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQIS-TRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ ++D + L DL V+ + D V H A
Sbjct: 57 VAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPL-PDLSVVQSAIVDAEWV--LHAA 113
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + GL +FDT A + +PR L +++ +K DW RP
Sbjct: 114 SQDLPSL-AEVGLVPARLFDTELAARLAGLPRVGLGAVVESLLGYRLEKGHSAADWSTRP 172
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LPE + YA D L+ + D + L GK F L P
Sbjct: 173 LPEEWLVYAALDVEVLVDLRDALAAVLE--EQGKTEWARQEFA-----AILAAGPPAPRA 225
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPR 506
+ + H L + +Q LR L++ RD +AR +D + G VLP+ ++ Q+ PR
Sbjct: 226 DPWRRTSGVHGLRSRRQLGMLRSLWQARDELARRRDIAPGRVLPDAAMVSAVQADPR 282
>gi|433603682|ref|YP_007036051.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
gi|407881535|emb|CCH29178.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
Length = 428
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 11/244 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYI-VDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ + VD + L L+ L E L V H A
Sbjct: 50 VAVDTERASGYRYSQRAYLVQLRRAGAGTVLVDPIALGGRLDPLVEALDGTEWV--LHAA 107
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D+ L + L +FDT A + R +L L++ +K DW RP
Sbjct: 108 SQDLPCL-AELDLRPSVLFDTELAGRLAGFERVALGTLVERLLGYRLEKGHGAADWSRRP 166
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP + YA D L+ + D ++ +L GK L F +R KP
Sbjct: 167 LPADWLNYAALDVELLVELRDVLEAELKK--QGKLEWALEEFEAARTA---PLPKP--RA 219
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
E + H + + +Q A+R L++ RD +AR++D + G VLP+ L++ A P D
Sbjct: 220 EPWRRTSGIHRIRSPRQLAAVRSLWETRDALARERDIAPGRVLPDSALVEAAVRNPPDEA 279
Query: 510 GIFA 513
G+ A
Sbjct: 280 GLLA 283
>gi|453070952|ref|ZP_21974179.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
gi|452760035|gb|EME18378.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
Length = 429
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 11/242 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+A+D E + Y L+Q+ +++D + +DL+ L EV+ + V H A
Sbjct: 49 LAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQPLAEVI--NPLQWVLHSA 106
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
D D+ L + GL +FDT A + R LA +++ V+ K DW RP
Sbjct: 107 DQDLPGL-AELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAADWSTRP 165
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LP+ + YA D LL + D M+ +L + GK F R K + +
Sbjct: 166 LPDAWLNYAALDVEVLLELRDAMEAELE--SQGKLEWAKEEFEYIRLAGPPKPKPDRWRR 223
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
++ +L +Q A+R L++ R+ +AR +D S VLP+ ++ A PR +
Sbjct: 224 TSHIT-----SLKTTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAIIDAALKDPRSLD 278
Query: 510 GI 511
+
Sbjct: 279 AL 280
>gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4]
gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4]
Length = 384
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 17/266 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MI+ + + +L + + I ID E+ ++ CL+Q+++ D + IVD L DL
Sbjct: 1 MISTTQDLEAACEKLAKSEFITIDTEFLRETTFWPELCLIQMASPDLEVIVDPLAEGLDL 60
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
+++ + +++KVFH A DI+ + L +FDT A C F S++Y
Sbjct: 61 APFFKLMANGDVIKVFHAARQDIEIIFHLGNLIPHPIFDTQVAAMVCGF----GDSVSYD 116
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ ++ DK+ + DW RPL E + YA D +L VY + +L
Sbjct: 117 QLVQKIKNIHIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLTLNAELEREGRA--- 173
Query: 426 LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKD 485
S + I + + + ++ + + L Q+ ++ + WR+R AR ++
Sbjct: 174 ---SWLSEEMAILESRDTYDLHPDDAWQRL--KMRLRKPQELMVMKAVTAWREREARARN 228
Query: 486 ESTGYVLPNHMLLQMAQSIPRDIQGI 511
V+ + + ++AQ PRD++ +
Sbjct: 229 VPRSRVIKDDAIFEIAQQQPRDVEAL 254
>gi|409400585|ref|ZP_11250609.1| ribonuclease D [Acidocella sp. MX-AZ02]
gi|409130471|gb|EKN00236.1| ribonuclease D [Acidocella sp. MX-AZ02]
Length = 387
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 21/275 (7%)
Query: 244 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDT 303
+++ + I E + L + L+ + + +D E+ ++Y CL+Q+ + +VD
Sbjct: 1 MNENKIEFIATSEALEALCARLETEAFVTVDTEFMREKTYYPELCLVQLGGAEDTAVVDA 60
Query: 304 LKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS 363
DL L +L +++VKVFH D++ + FG V +FDT A Q
Sbjct: 61 QAPGMDLAPLGRLLAKESVVKVFHACRQDVEIFLQLFGAVPVPLFDTQVAAMVAGFGDQ- 119
Query: 364 LAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
+ Y L+ DK + DW RPL + I YA D +L VY+ KL AA
Sbjct: 120 VGYDSLVNALTGAHIDKAHRFSDWSARPLSKSQINYAAADVTHLRDVYE--KLSAKLAAE 177
Query: 422 GKQNLV---LSTFTNSRNICKLKYEKPVFNEEGYMNI-FRSHALLNNQQKYAL-RELYKW 476
G+ V ++ T Y V E + + RS NN+++ L + + W
Sbjct: 178 GRLEWVAEEMAVLTQPET-----YR--VDPERAWERLKIRS----NNRRQLGLAKAIAAW 226
Query: 477 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
R+R A+ + G +L + + ++A P D + +
Sbjct: 227 REREAQRINIPRGRLLKDEQVPEIASLAPDDAEAL 261
>gi|389840658|ref|YP_006342742.1| ribonuclease D [Cronobacter sakazakii ES15]
gi|387851134|gb|AFJ99231.1| ribonuclease D [Cronobacter sakazakii ES15]
Length = 373
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTNDALATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+N+ K H D++ Q F + DT F+ P A L++
Sbjct: 64 APFQALLQDQNVTKFLHAGSEDLEVFQNAFSMMPDPFIDTQVLASFVGHPLSCGFATLVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 124 HHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-------- 175
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 176 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 233
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 234 AVNFVVREENLWKVARHMPGSL 255
>gi|344923288|ref|ZP_08776749.1| ribonuclease D [Candidatus Odyssella thessalonicensis L13]
Length = 356
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 9/253 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ P+++ Q Q +AID E+ SY L+Q+S + ++D L+ +LE
Sbjct: 5 LLNPDEIRQYCDYFSQSGTLAIDTEFCRTNSYWPKLALIQLSDGQETVLIDPLEEGVNLE 64
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL-PMPRQSLAYLLKH 370
+ +L K+IVK+FH D++ L K FG +FDT A FL P SLA +L+
Sbjct: 65 PVRNLLAQKDIVKIFHSCRQDLEILLKVFGEIPENIFDTQLAYNFLYPTEEISLARMLEE 124
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
V+ +K+ Q +W RPL + YA D YL ++ KL S + G+ +
Sbjct: 125 QLKVNLNKSKQNTNWIRRPLSVAQLTYAANDVIYLPEMHQ--KLLTSLESCGRYEWLREE 182
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
N+ KL + RS +Q Y L+++ WR+++A++ + +
Sbjct: 183 QLNNFAAHKLAPTTDYWLRLAKRGNHRS------RQLYILKKICDWREKVAQELNYNRKR 236
Query: 491 VLPNHMLLQMAQS 503
V + +L++ ++
Sbjct: 237 VCADETILKIVET 249
>gi|398941935|ref|ZP_10670028.1| ribonuclease D [Pseudomonas sp. GM41(2012)]
gi|398161300|gb|EJM49536.1| ribonuclease D [Pseudomonas sp. GM41(2012)]
Length = 377
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 132/286 (46%), Gaps = 21/286 (7%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
I + + + Q +E +Q +A+D E+ ++ L+QI + Y++D L + ++ +
Sbjct: 8 IRDNDSLGQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGVRAYLIDPLSI-DNWQ 66
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L +L + +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 67 PLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNL-GFSMGYSRLVQ 125
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D K DW RPL + I YA D +L V+ ++ LS K VL
Sbjct: 126 EVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVFVQLRPKLS---DDKYAWVLE 182
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL---LNNQQKYALRELYKWRDRIARDKDE 486
+ + L+ E + ++R L L+ Q LREL WR+R AR +D
Sbjct: 183 D--GAELVANLRREVDPYE------VYREAKLAWKLSRAQLAVLRELCAWREREARARDL 234
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK---EHVLDI 529
++ H L +A++ P ++ + + P+TV+ E +LD+
Sbjct: 235 PRNRIVREHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDL 280
>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
Length = 372
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 21/249 (8%)
Query: 261 LVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK 320
L+ L +A+D E + +Y CL+QI+T D ++D L +L+ L +
Sbjct: 27 LLGRLSSTPWVALDTEADSLHAYPEKVCLLQITTPLGDELIDPLS-GINLDPLLDTFGGH 85
Query: 321 NIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTF 380
++ HG+D D++ L+K +FDT A + L + L +L+ HY V +K
Sbjct: 86 ELI--MHGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGHTQFGLVHLVAHYLGVTLEKGS 143
Query: 381 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKL 440
Q DW RPL YAR DTHYL ++ D +K DL K L +R I +
Sbjct: 144 QKADWAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEV----KGRLGWHQELCARLIIEC 199
Query: 441 KYEKP------VFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPN 494
+ P V+ +G ++R AL LRE+++WR+ A + +VL +
Sbjct: 200 S-QNPEPDPDLVWRIKGSNRLYRP-AL------AVLREVWRWREAEAIVANRPPYFVLRH 251
Query: 495 HMLLQMAQS 503
L+ ++ +
Sbjct: 252 ETLIDLSAA 260
>gi|395447806|ref|YP_006388059.1| ribonuclease D [Pseudomonas putida ND6]
gi|397695883|ref|YP_006533766.1| ribonuclease D [Pseudomonas putida DOT-T1E]
gi|388561803|gb|AFK70944.1| ribonuclease D [Pseudomonas putida ND6]
gi|397332613|gb|AFO48972.1| ribonuclease D [Pseudomonas putida DOT-T1E]
Length = 377
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+QI + +++D L L + + L ++L D +VKV H
Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL-LIGNWQPLADLLEDSGVVKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L ++ ++ LS K VL + + L+ E V
Sbjct: 145 PLSETQVSYAAEDAVHLAELFTVLRPRLS---DDKYAWVLED--GAELVAALRRE--VEP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E Y ++ + L QQ LREL WR+R AR++D +L H L MA+S P ++
Sbjct: 198 ESLYRDVKLAWKL-APQQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ P+T+++
Sbjct: 257 SALAKIDEMHPRTIRQ 272
Score = 40.0 bits (92), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ LREL WR+R AR++D +L H L MA+S P ++ + P+T+++
Sbjct: 213 QQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQ 272
>gi|337269427|ref|YP_004613482.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
gi|336029737|gb|AEH89388.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 128/279 (45%), Gaps = 39/279 (13%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT +++ ++ ++ + +D E+ ++ CL+Q++ ++D L
Sbjct: 1 MHVITTQKELETALAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSSDI 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL +++ ++ +VKVFH A DI+ + L +FDT A C F S++
Sbjct: 61 DLRPFFKLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVCGF----GDSVS 116
Query: 366 Y--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA--AH 421
Y L++ DK+ + DWRHRPL + + YA D +L+ VY + +L+ AH
Sbjct: 117 YDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLNAELARENRAH 176
Query: 422 G---KQNLVLSTFT------NSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRE 472
+ +++ S T ++ K++ KP Q+ ++
Sbjct: 177 WLNEEMDVLTSRETYDPHPEDAWKRLKMRLRKP-------------------QELAIVQA 217
Query: 473 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ WR+R AR++D G VL + + ++AQ PRD +
Sbjct: 218 VAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAAL 256
>gi|419956034|ref|ZP_14472150.1| ribonuclease D [Pseudomonas stutzeri TS44]
gi|387967148|gb|EIK51457.1| ribonuclease D [Pseudomonas stutzeri TS44]
Length = 405
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 128/275 (46%), Gaps = 12/275 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+ + + +L +E +Q +A+D E+ ++ L+Q+ Y++D L ++ D +
Sbjct: 38 VLDDAHLARLCAEWRQLPFVALDTEFMRVDTFYPIAGLVQVGDGRCAYLIDPLAVK-DWQ 96
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L D +VKV H D++ L + G +FDT A +L + S+ Y L++
Sbjct: 97 PFAGLLQDSAVVKVLHACGEDLEVLSRLTGQLPAPLFDTQLAGGYLNLG-FSMGYSRLVQ 155
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+D K DW RPL E ++YA D +L +Y + LS K+ V+
Sbjct: 156 AVLGLDLPKDETRSDWLQRPLSEMQVRYAAQDVQHLAELYAALLPRLS---DDKRRWVME 212
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + L+ E +E Y + ++ L QQ LR L WR+R AR +++
Sbjct: 213 D--GAELVANLQRETD--PDEAYREVKQAWRL-RPQQLAVLRALAAWRERQARVRNQPRN 267
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
+L L +A++ P+D+ + + P+TV++
Sbjct: 268 RILREASLWPLARTQPKDLVALARIDDMHPRTVRQ 302
>gi|349687992|ref|ZP_08899134.1| ribonuclease D [Gluconacetobacter oboediens 174Bp2]
Length = 395
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 116/265 (43%), Gaps = 13/265 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
+++T ++ + + L+ + + ID E+ R+Y CL+Q++ ++DT+ D
Sbjct: 13 VLVTTTAELEAVTARLRHEPFVTIDTEFVRERTYWPELCLVQLAGEKDVVVIDTIAPGID 72
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L +L D ++VKVFH A D++ F +FDT A Q + Y L
Sbjct: 73 LTSLGALLDDASVVKVFHAARQDLEIFLHLFDHLPAALFDTQVAAMVAGYGDQ-VGYDNL 131
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ V DK+ + DW RPL I YA D YL VY+ KL + G+ + V
Sbjct: 132 VSSLLGVQIDKSHRFSDWAARPLSPAQIGYAAADVTYLRLVYE--KLLVQLEREGRLDWV 189
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA-LRELYKWRDRIARDKDE 486
+ N + + E+ R NN++ LR + WR+ A+ +
Sbjct: 190 AAELDILNNPTTFRPDPLTLWEK-----MRPRT--NNRRMLGILRAVAAWREGEAQRVNV 242
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGI 511
+L + L+++A + P I +
Sbjct: 243 PRQRLLKDESLMEIAATAPATIDAL 267
>gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)]
gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)]
Length = 394
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 19/279 (6%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTR 295
EP++ +P +I + + + ++ + +A+D E + Y L+Q+
Sbjct: 3 EPREGIP------PVIADADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRA 56
Query: 296 DKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC 354
++D + DL L + D V H A D+ L ++ G+ +FDT A
Sbjct: 57 GAGSALIDPVAC-PDLSGLGAAIADAEWV--LHAATQDLPCL-REIGMVPTRIFDTELAG 112
Query: 355 KFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414
+ PR L ++++ +K DW RPLPEP ++YA D L+ + D ++
Sbjct: 113 RLAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 172
Query: 415 DLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELY 474
+L GK F + + K + M H + +Q +REL+
Sbjct: 173 ELD--RQGKLEWARQEFDAIASAPPAEPRKDPWRRTSGM-----HKVRRRRQLAVVRELW 225
Query: 475 KWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ RDRIA+ +D S G VL + +++ A ++P + + A
Sbjct: 226 QARDRIAQRRDVSPGKVLGDAAIVEAALALPPNAHALAA 264
>gi|398846869|ref|ZP_10603820.1| ribonuclease D [Pseudomonas sp. GM84]
gi|398252150|gb|EJN37356.1| ribonuclease D [Pseudomonas sp. GM84]
Length = 377
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 14/273 (5%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+QI +++D L L D + L ++L D +VKV H
Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQCAFLIDPL-LINDWQPLGDLLDDSGVVKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLAIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L ++ ++ LS K VL + + L+ E V
Sbjct: 145 PLSETQVSYAAEDAVHLAELFSALQPRLS---DDKYAWVLED--GAELVAALRRE--VEP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E Y ++ + L + QQ LREL WR+R AR +D +L H L MA+ P ++
Sbjct: 198 ETLYRDVKLAWKL-SRQQLAVLRELCAWREREARSRDVPRNRILKEHSLWPMAKMQPDNL 256
Query: 509 QGIFACCNPVPQTVKEHVLDIHAIILKARLQSL 541
+ P+T+++ H I L R SL
Sbjct: 257 SALAKIEEMHPRTIRQD--GAHLIELIKRAASL 287
>gi|419967866|ref|ZP_14483740.1| ribonuclease D [Rhodococcus opacus M213]
gi|414566760|gb|EKT77579.1| ribonuclease D [Rhodococcus opacus M213]
Length = 429
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 12/266 (4%)
Query: 251 MITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQISTRDKDYI-VDTLKLRE 308
++T E V + + L + +A+D E + Y L+Q+ + VD +
Sbjct: 34 VVTTAEGVAKAAAALSEGTGPLAVDAERASGFRYSARAYLVQLRREGAGTVLVDPIPTAA 93
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLL 368
DL L EV+ + + H AD D+ L + GL +FDT A + R LA ++
Sbjct: 94 DLAPLAEVI--NPLEWILHSADQDLPGL-AEIGLAPATLFDTELAGRLAGFERVGLAAIV 150
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ ++ K DW RPLP+ + YA D L+ + + M +L GK
Sbjct: 151 ERTLGLELRKGHGAADWSKRPLPDSWLNYAALDVEVLVELRNVMAAELD--EQGKSEWAA 208
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
F + R K + + ++ ++ +Q A R L++ R+ +AR +D S
Sbjct: 209 QEFEHIRLAGPPKPKADRWRRTSHITSLKTQ-----RQLAAARSLWQAREDLARKRDVSP 263
Query: 489 GYVLPNHMLLQMAQSIPRDIQGIFAC 514
VLP+ ++ A PR I+ + A
Sbjct: 264 SRVLPDSAIIDAATKDPRGIEALRAL 289
>gi|301327561|ref|ZP_07220781.1| ribonuclease D [Escherichia coli MS 78-1]
gi|300845871|gb|EFK73631.1| ribonuclease D [Escherichia coli MS 78-1]
Length = 371
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 1 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 60 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQREYAAADVWYLLPI--TAKLMVETEASGW----LP 173
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 174 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P E L
Sbjct: 233 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEEALP 287
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 288 QPMLNLM 294
>gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b]
gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b]
Length = 388
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 15/262 (5%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ ++T E + + L + + +D E+ ++ C++Q+++ ++ + VDTL
Sbjct: 1 MSLLTSTEDLAAACARLSRHPFVTVDTEFLRETTFWPKVCVIQLASPEEAFAVDTLAEGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLA 365
DL E++ D ++VKVFH A D++ + + L +FDT A C F + S
Sbjct: 61 DLSPFFELMADASVVKVFHAARQDLEIIWRLARLIPTPLFDTQVAAMVCGF--GDQASYV 118
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L+K DK+ + DW RPL I YA D +L +Y ++ L + N
Sbjct: 119 ELVKAIAKESLDKSSRFTDWSKRPLSVAQIDYAIADVTHLRQIYTHLRQRLE-----RSN 173
Query: 426 LVLSTFTNSRNICKLK-YEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
+ R + + YE+ N + H + + L EL WR+ A+ +
Sbjct: 174 RLDWLVDEMRTLTSPETYEQSPENAWERLR----HRVRKPRDLAVLMELAAWREAEAQSR 229
Query: 485 DESTGYVLPNHMLLQMAQSIPR 506
D VL + ML+++A + PR
Sbjct: 230 DVPRARVLKDDMLVEIALAAPR 251
>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
Length = 401
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ + ++ + +Q+ +A+D E+ +Y L+Q+ ++ ++D L + D
Sbjct: 32 VVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAI-TDF 90
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+L + ++K+ H D+ ++F M DT +FL + + LA L +
Sbjct: 91 SPFVALLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQ 150
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +++ DK L +W RPL + +QYA D YLL +Y ++ +L+ +
Sbjct: 151 QYLNIEIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQA----- 205
Query: 430 TFTNSRNICKLKYEKP-----VFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
R+ C+L K +E+ Y++I + LN + LR L +WR +A ++
Sbjct: 206 ----VRDDCELILAKTHKLQERDSEKAYLDIPNAWK-LNPLELSRLRVLAQWRQNVAIER 260
Query: 485 DESTGYVLPNHMLLQMAQSIPRD 507
D + Y++ + L ++A++ PR+
Sbjct: 261 DLALSYIVKSEHLWKVAKNNPRN 283
>gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440]
gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440]
Length = 377
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+A+D E+ ++ L+QI + +++D L L + + L ++L D +VKV H
Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL-LIGNWQPLADLLEDSAVVKVLHACS 85
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHR 388
D++ L + G +FDT A +L + S+ Y L++ ++ K DW R
Sbjct: 86 EDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRSDWLQR 144
Query: 389 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448
PL E + YA D +L ++ ++ LS K VL + + L+ E V
Sbjct: 145 PLSETQVSYAAEDAVHLAELFTVLRPRLS---DDKYAWVLED--GAELVAALRRE--VEP 197
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E Y ++ + L QQ LREL WR+R AR++D +L H L MA+S P ++
Sbjct: 198 ESLYRDVKLAWKL-APQQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNL 256
Query: 509 QGIFACCNPVPQTVKE 524
+ P+T+++
Sbjct: 257 SALAKIDEMHPRTIRQ 272
Score = 40.0 bits (92), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ LREL WR+R AR++D +L H L MA+S P ++ + P+T+++
Sbjct: 213 QQLAVLRELCAWREREARNRDVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQ 272
>gi|452911256|ref|ZP_21959927.1| Ribonuclease D [Kocuria palustris PEL]
gi|452833682|gb|EME36492.1| Ribonuclease D [Kocuria palustris PEL]
Length = 435
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 19/283 (6%)
Query: 227 VPKEDFLKCEEPKQALP-LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
+P FL ++P LP L DT + EQ+++ +A+D E + Y
Sbjct: 23 IPDSVFL--DQPMDGLPPLVDTTRRLELAAEQLSEGTGP------VALDTERASGFRYGQ 74
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
L+Q+ ++ + L +++E L + V H A D+ L ++ ++
Sbjct: 75 RAFLVQLRREGTGTVLIDPEATGSLAIIDEAL--RRTEWVLHAATQDLPCL-RELDMHPD 131
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+FDT + + R LA + K DW RPLPEP + YA D L
Sbjct: 132 ALFDTELGGRIAGLSRVGLAAETEELLGFTMAKEHSAVDWSTRPLPEPWLTYAALDVEVL 191
Query: 406 LYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQ 465
+ + M+ L + GK L F R K + + R +
Sbjct: 192 VQLRYAMEELLRS--QGKLEWALEEFEAVRTAPPAAPRKDPWRRTSGITKIR-----GRR 244
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
Q ALR L+ R+ +AR KD S G +LP+ L+ +AQ++PR +
Sbjct: 245 QLTALRNLWTEREELARHKDISPGRLLPDSALVAVAQAMPRSV 287
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+Q ALR L+ R+ +AR KD S G +LP+ L+ +AQ++PR +
Sbjct: 242 GRRQLTALRNLWTEREELARHKDISPGRLLPDSALVAVAQAMPRSV 287
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,090,881,993
Number of Sequences: 23463169
Number of extensions: 711798638
Number of successful extensions: 4898717
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13566
Number of HSP's successfully gapped in prelim test: 55560
Number of HSP's that attempted gapping in prelim test: 3580295
Number of HSP's gapped (non-prelim): 605878
length of query: 1006
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 853
effective length of database: 8,769,330,510
effective search space: 7480238925030
effective search space used: 7480238925030
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 82 (36.2 bits)