BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7894
(1006 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 230/561 (40%), Positives = 330/561 (58%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L + ND +LE + +D +G VLP+ PK +
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKTI 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAGE-------YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL + L K D I + F HPY+YEL
Sbjct: 203 FVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
D + P + L+ +P+ + +TP +++ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 DHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 630 KEHVLDIHAIILKARLQPLTK 650
++ + ++H +I +AR PL K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 304 bits (779), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 242/399 (60%), Gaps = 23/399 (5%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 248
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 249 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 308
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH+
Sbjct: 309 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF 368
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 451
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 369 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 423
Query: 452 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ N V + V+++ + A +++ L+++ E+ P
Sbjct: 484 VSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATP 521
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 242/385 (62%), Gaps = 14/385 (3%)
Query: 166 AVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY----DAIESFCHPYEY 221
A + +PQL+F+V+ +NS E ++ KL EKP++L PL ++ + S HPYE
Sbjct: 131 AAHLTKPQLRFRVQPNNSREFVWSWKLTEKPHSLVPLEKIIAQVKLDPSLKNSLPHPYEP 190
Query: 222 ELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYR 281
E+ V + P + +T + ++ Q++ ++ EL+ +EIA+DLE+H+YR
Sbjct: 191 EIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEIAVDLEHHDYR 250
Query: 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG 341
S++G+ CLMQIS R+KD+IVDTL+LRE+LE LN V T+ NI+KVFHGA DI WLQ+DFG
Sbjct: 251 SFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGATMDIIWLQRDFG 310
Query: 342 LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
LYVV +FDT+ A K L LA+LL+ YCD D+DK +Q+ DWR RPLP ++YA++D
Sbjct: 311 LYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSD 370
Query: 402 THYLLYVYDCMKLDL-SAAAHGKQNLVLSTFTNSRNICKLKYE----KPVF--NEEGYMN 454
THYLLY++D ++ +L S +A K+NL+ S F +S+ I KYE P++ +G+ N
Sbjct: 371 THYLLYIWDHLRNELISKSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRN 430
Query: 455 I---FRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ F S ++ + R L+ WRD +AR +DES YVLPN +L+ +A S P + +
Sbjct: 431 VLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADV 490
Query: 512 FACCNPVPQTVKEHVLDIHAIILKA 536
F+ + + +V DI ++ +A
Sbjct: 491 FSISKQLTPIARMYVEDIVKVVQEA 515
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 578 RELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIH 637
R L+ WRD +AR +DES YVLPN +L+ +A S P + +F+ + + +V DI
Sbjct: 450 RALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIV 509
Query: 638 AIILKA 643
++ +A
Sbjct: 510 KVVQEA 515
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 11/264 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++IT E +T +V L+++ ++ID E+ R+Y CL+Q++ +D+ +VDTL D
Sbjct: 13 VLITTTEDLTGVVERLRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGID 72
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L +L D +VKVFH A D++ FG +FDT A Q + Y L
Sbjct: 73 LAPLGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALFDTQVAAMVAGFGDQ-VGYDNL 131
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ DK + DW RPL E I YA D +L VY + L G+ + V
Sbjct: 132 VASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERLE--REGRLDWV 189
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDES 487
S + + + E M S N + LR + WR+R A+ +
Sbjct: 190 ASDLAVLSDPATFRPDPETLWER--MRPRTS----NRRMLGVLRAITAWREREAQRVNVP 243
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGI 511
+L + LL++A + P D+ +
Sbjct: 244 RQRLLKDESLLEIAATAPADVDAL 267
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 20/285 (7%)
Query: 250 MMITEPE--------QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
M +T PE + Q E + Q +A+D E+ ++ L+Q+ +++++
Sbjct: 1 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLI 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L +R D E+L D +VKV H D++ + G V +FDT A +L M
Sbjct: 61 DPLLVR-DWGPFAELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA- 118
Query: 362 QSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
S+ Y L+K D+D K DW RPL E ++YA D +L VY + LD +
Sbjct: 119 HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY--LALDARLS 176
Query: 420 AHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
+ L+ N+C+ + + E + L QQ LREL WR+
Sbjct: 177 EEKRAWLLEDGAELVANLCRESDPREAYRE------VKLGWRLRPQQLAVLRELCAWREE 230
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 524
AR ++ +VL L +A+ +P++ + A + P+TV++
Sbjct: 231 QARLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQ 275
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ E + L + L+++ + ID E+ R+Y C++Q+ D ++DTL DL
Sbjct: 14 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDL 73
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ E+L D ++KVFH DI+ FG MFDT A Q + Y L+
Sbjct: 74 APVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQ-VGYDTLV 132
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS----AAAHGKQ 424
DK + DW RPL + I YA D +L VY+ ++ L A ++
Sbjct: 133 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWVSEE 192
Query: 425 NLVLSTFTNSRNICKLKYE--KPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
VL+ R +E +P N Y+ + R+ A RE+ R I R
Sbjct: 193 MAVLNDPATYRTDPVTMWERLRPRTNNRRYLGLLRAIC--------AWREVEAQRLNIPR 244
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++ + LL++A + P D + +
Sbjct: 245 QR------LIKDESLLEIAATSPADAESL 267
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 15/262 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L + Q+ +A+D E+ R+Y L+Q+ + ++D L + E
Sbjct: 1 MITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTITE-W 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+L D+NI K H D++ Q FG+ DT F+ P A L++
Sbjct: 60 APFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVE 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
H+ V DK+ DW RPL E YA D YLL + + + A
Sbjct: 120 HHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW-------- 171
Query: 430 TFTNSRNICKLKYEK--PVFN-EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486
T + N C+L ++ V + +E + I + L +Q L+ L WR R AR++D
Sbjct: 172 -LTAAINECRLMTQRRGEVLDPDEAWREITNAWQ-LRPRQLACLKLLAGWRLRKARERDM 229
Query: 487 STGYVLPNHMLLQMAQSIPRDI 508
+ +V+ L ++A+ +P +
Sbjct: 230 AVNFVVREENLWKVARHMPGSL 251
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 9/259 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + ++++ S+ ++ ++A+D E+ R+Y L+Q+ ++ ++D L +
Sbjct: 5 LITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSITV-W 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ ++L D + K H D++ FGL DT FL P A L+
Sbjct: 64 QPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAALVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E QYA D +YLL + + + ++A + +
Sbjct: 124 DYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWE-----A 178
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
R +C+ K + + E+ Y I + L + L++L WR R AR++D +
Sbjct: 179 ALDECRQLCQRK-QDVLAPEQAYREIGNAWQ-LKGRHLACLQKLADWRLRKARERDSAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDI 508
+++ L Q+A+ +P +
Sbjct: 237 FIVREEHLGQVARYLPGSL 255
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 34/278 (12%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT E + L + +D E+ ++ CL+Q++ + IVD L DL
Sbjct: 3 IITTNEALRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA---CKFLPMPRQSLAY- 366
++ ++N+VKVFH A DI+ + +FDT A C F S+ Y
Sbjct: 63 APFYALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGF----GDSVGYE 118
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 425
L++ DK+ + DW RPL + +QYA D YL +Y+ +
Sbjct: 119 TLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLA------------ 166
Query: 426 LVLSTFTNSRNICKLKYEKPVFNE-EGYM----NIF-RSHALLNNQQKYA-LRELYKWRD 478
T+++ + E V + E Y N + R A Q+ A L E+ WR+
Sbjct: 167 ---KRLTHTKRAHWVAEEMAVLQDPETYAMRPENAWKRVKARFRGQRGLAVLVEVAAWRE 223
Query: 479 RIARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFA 513
R A+++D V+ + L ++A IPR D+ G+ A
Sbjct: 224 RQAQERDLPRSRVMKDDALAEIATQIPRTISDLDGLRA 261
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 15/267 (5%)
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRE 308
+ +IT E + ++ L + +D E+ ++ C++Q+++ D+ VD L
Sbjct: 1 MSLITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGL 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYL 367
DL L E++ D +VKVFH A D++ + + +FDT A Q S L
Sbjct: 61 DLAPLFELMADPAVVKVFHAARQDLEIVWNLAKIIPAPLFDTQVAAMVCGFGDQVSYGDL 120
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
++ C V DK+ + DW RPL + YA D YL +Y ++ L K+
Sbjct: 121 VQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKL------KETGR 174
Query: 428 LSTFTNSRNICK--LKYEK-PVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
L ++ + YE+ P E + N R L L E+ WR+ A+ +
Sbjct: 175 LGWLSDEMALLTSPATYEQHPDNAWERFRNRVRKPRDLG-----VLMEVAGWREAEAQAR 229
Query: 485 DESTGYVLPNHMLLQMAQSIPRDIQGI 511
D +L + +L+++A + PR +
Sbjct: 230 DVPRSRILKDDVLIELALAAPRSADAL 256
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 134/307 (43%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P + L
Sbjct: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEDALP 291
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 292 QPMLNLM 298
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 120/264 (45%), Gaps = 19/264 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT + Q+ + K+ +IA+D E+ R+Y L+Q+ ++ ++D L +++
Sbjct: 5 LITTDAGLQQVCDQAKKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ-W 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
+ E+L++ +VK H D++ F M DT F P A L+
Sbjct: 64 QPFIELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPMSCGFATLVA 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL-----YVYDCMKLDLSAAAHGKQ 424
Y +V+ DK+ DW RPL E YA D YLL V + + +AAA +
Sbjct: 124 EYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWTAAASNEC 183
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
L +C+ + E + E Y I + L +Q L++L +WR R AR++
Sbjct: 184 LL----------LCQRRSET-LAPELAYREITNAWQ-LRPRQLGCLQKLAEWRLRQARER 231
Query: 485 DESTGYVLPNHMLLQMAQSIPRDI 508
D + +V+ L Q+A+ +P +
Sbjct: 232 DLAVNFVVREENLWQVARHMPTSL 255
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 125/263 (47%), Gaps = 17/263 (6%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
++T+ + ++ + +Q+ +A+D E+ +Y L+Q+ + ++D L + D
Sbjct: 32 VVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLAI-TDF 90
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+L + ++K+ H D+ ++F M DT +FL + + LA L +
Sbjct: 91 SPFVALLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQ 150
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y +V+ DK +W RPL + +QYA D YLL +Y ++ +L+ +
Sbjct: 151 QYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQA----- 205
Query: 430 TFTNSRNICKLKYEKP-----VFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDK 484
R+ C+L K +E+ Y++I + LN + LR L +WR +A ++
Sbjct: 206 ----VRDDCELVLAKTHKLQERDSEKAYLDIPNAWK-LNPLELSRLRVLAQWRQNVAIER 260
Query: 485 DESTGYVLPNHMLLQMAQSIPRD 507
D + Y++ + L ++A++ PR+
Sbjct: 261 DLALSYIVKSEHLWKVAKNNPRN 283
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 3/174 (1%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT ++ + + L + +D E+ +Y C++Q+++ D+ +VD L DL
Sbjct: 3 LITTTAELASVCARLANYPVVTVDTEFLRETTYYPLLCVVQMASPDEAVVVDALAEGIDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ ++++++ ++KVFH A DI+ + G+ +FDT A L S+AY L+
Sbjct: 63 KPFFDLMSNERVLKVFHAARQDIEIVWHQAGIIPHPIFDTQVAAMVLGYG-DSIAYDALV 121
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHG 422
+ DKT + DW RPL + ++YA D +L V+ + DL G
Sbjct: 122 ERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKKRGRG 175
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 119/257 (46%), Gaps = 9/257 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLRED 309
+I+ E + ++V++ + + +D E+ R+Y L+QI+ D++ Y +D L ++ D
Sbjct: 6 IISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIK-D 64
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL-PMPRQSLAYLL 368
L L E+L D+N +K+ H A D+ + + G +FDT A F + SL L+
Sbjct: 65 LSPLGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSISTISLLQLV 124
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
+ + DK+ +W RPL E + Y+ D YL ++ L + G + +
Sbjct: 125 SEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYL----RATRVILLSKIIGPK--IK 178
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
S N+ +E + L+ + +E+ WR++ AR+ +
Sbjct: 179 SWLQEELNLLNNPANYSTIADESRYKKVKGVNKLDRKSIGVAQEIATWREQKARELNRPR 238
Query: 489 GYVLPNHMLLQMAQSIP 505
G+V+ + +LL++A P
Sbjct: 239 GHVIKDDILLEIAAIRP 255
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ + L S L + IAID E+ SY CL+QI+ + +D L D+
Sbjct: 6 LITDSATLAALCSRLSRADFIAIDTEFIRENSYWPELCLIQIADDKEAAAIDPLAPGLDM 65
Query: 311 EVLNEVLTD-KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L ++L + ++I+KVFH D++ + G +FDT A L + Q + L+
Sbjct: 66 TPLTDLLVNNEDILKVFHAGGQDLEIILHHTGKMPFPLFDTQIAAMALGVGEQVGYSNLV 125
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 409
+ Y + DK + DW HRPL + YA D +L ++
Sbjct: 126 ERYLSIKLDKGARFTDWSHRPLDRRQLDYAIADVTHLATLF 166
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIS---TRDKDYI-VDTLKLR 307
IT +++ + Q + +D E+ R+Y CL+Q++ T D D + +D L
Sbjct: 5 ITTTDELAAYCARAATQPYVTVDTEFLRERTYFAQLCLVQVAMPGTDDTDAVLIDPLAEG 64
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY- 366
LE L E+ + N+VKVFH A D++ + GL +FDT A Q + Y
Sbjct: 65 LSLEPLYELFRNVNVVKVFHAARQDLEIFFVEGGLVPTPLFDTQVAAMVCGFGDQ-VGYE 123
Query: 367 -LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417
L++ + DK+ + DW RPL + YA D YL +Y+ + +L+
Sbjct: 124 TLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELA 175
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 20/263 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT+ + + Q + + + IA+D E+ SY CL+Q++ + +D DL
Sbjct: 6 LITDSKTLAQFCARIAKSPYIAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDL 65
Query: 311 EVLNEVLTD-KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLL 368
L +++ D ++++KVFH D++ + G +FDT A L + Q L+
Sbjct: 66 SPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAAMALGLGEQIGYGNLV 125
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ-NLV 427
+ V DK + DW RPL + I YA D YL+ ++ M +L G +
Sbjct: 126 DAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGDWLDQE 185
Query: 428 LSTFTNSRNICKLKYE-KPVFNEEGYMNI---FRSHALLNNQQKYALRELYKWRDRIARD 483
+ ++ N YE KP EE + + R +L L+ L WR+ A+D
Sbjct: 186 MERISDPSN-----YENKP---EEAWQRVRIASRKADVLGR-----LKALAAWREMEAQD 232
Query: 484 KDESTGYVLPNHMLLQMAQSIPR 506
K+ G ++ + L +A PR
Sbjct: 233 KNLPRGRIVKDETLADIASHPPR 255
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 23/278 (8%)
Query: 239 KQALPLSDTPLMM--ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD 296
K L LS MM IT+ + ++ L+ + ID E+ ++ CL+Q+++ D
Sbjct: 12 KTNLNLSGYNRMMKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLASPD 71
Query: 297 KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQA--- 353
++D + DL+ +++ +K IVKVFH A DI+ + G+ +FDT A
Sbjct: 72 TTVLIDPISQDIDLKPFFDLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSI 131
Query: 354 CKFLPMPRQSLAY--LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 411
C F S++Y +++ DK+ + DW RPL E + YA D YL VY
Sbjct: 132 CGF----GDSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLL 187
Query: 412 MK--LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA 469
+K L+ + H + + Y+ P E + ++
Sbjct: 188 LKKQLEKNKRTHWMDDEIAVLLEPK------TYDMP----ENEAWKKVKGKIKKPRELAV 237
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRD 507
L+++ WR+R AR + +++ + L+++A P+D
Sbjct: 238 LQKIAAWRERKARQYNIPRRHIIKDECLIEIAIQQPKD 275
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 13/265 (4%)
Query: 250 MMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED 309
++I E + L L + + +D E+ ++Y C++Q+ + ++D D
Sbjct: 11 VLIETTEALAALCDRLAAEPFVTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLD 70
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--L 367
L L + + + KVFH DI+ FG +FDT A Q + Y L
Sbjct: 71 LAPLGALFANPAVTKVFHACRQDIEIFLLKFGAVPAPLFDTQVAAMVAGFGDQ-VGYDTL 129
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
+ DK + DW RPL I YA D +L VY+ ++ L+ G+ + V
Sbjct: 130 VSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLT--REGRLDWV 187
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNI-FRSHALLNNQQKYALRELYKWRDRIARDKDE 486
+ + E E+ + + R N +Q ++ + WR+R A +
Sbjct: 188 AEEAAVLADPATYRTEP----EDAWRRLKLRGG---NRRQLALVKAIAAWREREAMRVNV 240
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGI 511
++ + + ++A P D +G+
Sbjct: 241 PRQRIVRDEQIPELAALAPADAEGL 265
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 11/289 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+++ + LV++ +Q + +D E+ R+Y L+Q ++D + L DL
Sbjct: 26 VSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL-PDLS 84
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
+L + NI+K+ H D++ +FD+ A M L Y L++
Sbjct: 85 AFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMG-HGLGYAKLVE 143
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
DK DW RPL E + YA D YL +Y + L A Q+ +
Sbjct: 144 TCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKA-----QDRLGW 198
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + + + P + Y+ + + L +Q Y L+ L KWR A +D + G
Sbjct: 199 LYEEGERMTEGRLATPDMDT-AYLRVKNAFQLTEHQLAY-LKVLAKWRLEKALARDLALG 256
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538
+V+ +H L+ +A+ P+ + + + Q + H DI ++ A L
Sbjct: 257 FVIKDHGLIALAKKQPKSMGDLLKLNDLTEQEKRIHGKDILRVMQTADL 305
>sp|A1SVE6|RND_PSYIN Ribonuclease D OS=Psychromonas ingrahamii (strain 37) GN=rnd PE=3
SV=1
Length = 369
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+IT Q+ ++ L I++D E+ R+Y L+QIS + ++D + + DL
Sbjct: 5 IITTTAQLHDFIATLDGS-PISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAV-GDL 62
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+ + +KNI+ H + D++ ++ G +FDT AC FL M SL Y ++
Sbjct: 63 SSFWQAIDNKNII--LHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMG-ASLGYAKMV 119
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
+ V DK DW RPL E I YA D YL
Sbjct: 120 ETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYL 156
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 289 LMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
L+QI + Y++D ++ +D+E L +++ ++ IV H D+K+L + +G++ F
Sbjct: 38 LVQIGDEENTYVIDLYEI-QDIEPLRKLINERGIVG--HNLKFDLKYLYR-YGIFPSATF 93
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT A L R SL +++ + DK++Q DW L + ++YA D L +
Sbjct: 94 DTMIASYLLGYERHSLNHIVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLREL 153
Query: 409 YDCMK 413
+ M+
Sbjct: 154 FPKMR 158
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 237 EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD 296
EP L L ++ + ++ ++ ++S+L +Q IA D E+ L+Q++T D
Sbjct: 425 EPAHTLRLDESHVHLVDSKDKFYAMLSDLCRQSMIAFDSEWKPTFGGANEVSLIQLATWD 484
Query: 297 KDYIVDTLKLREDLEVLN------EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
Y++D + LE L+ V +++K+ +DI QK + V M+ +
Sbjct: 485 DVYMIDVMV--SQLEPLDWAALAKNVFNRDDVLKLSFAPSTDISMFQKALPSFNV-MYSS 541
Query: 351 HQACKFLPMP---------------------RQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389
L + Q+LA L++ DK+ Q +W RP
Sbjct: 542 QSTSAILDLQLLWRHVERFDSFRFPYHEESVNQNLANLVRLCLGKKLDKSNQFSNWAQRP 601
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLS 417
L + ++YA D LL +YD ++ L+
Sbjct: 602 LRKEQLRYAALDAFCLLEIYDAIEKQLT 629
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 16/265 (6%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT P ++T + + + I +D E+ R+Y L+Q++ ++ ++D L +
Sbjct: 5 ITHPSELTDRLQAARPAR-IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMN-A 62
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LLK 369
L E LT +IVKV H A D+ + G+ +FDT Q L + Y L++
Sbjct: 63 ALKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDT-QIAAALAGVGGGMGYQKLVQ 121
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
K DW RPL ++YA D YL ++D + L+ +QN +
Sbjct: 122 EVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLT-----EQNRLGW 176
Query: 430 TFTNS-RNICKLKYEKPVFNEEGYMNI-FRSHALLNNQQKYALRELYKWRDRIARDKDES 487
++ R + ++++ + E + ++ R+ L + L L +WRD AR D
Sbjct: 177 LAEDAERLLATVEHD----DGERWPHVSLRTAQFLEPAAQRRLLRLLRWRDLQARQSDRP 232
Query: 488 TGYVLPNHMLLQMAQSIPRDIQGIF 512
++L N + Q+A+ P D+ +
Sbjct: 233 RSWILDNEVASQLARFPPADLDALL 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,037,988
Number of Sequences: 539616
Number of extensions: 17386577
Number of successful extensions: 127747
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 3584
Number of HSP's that attempted gapping in prelim test: 76114
Number of HSP's gapped (non-prelim): 26379
length of query: 1006
length of database: 191,569,459
effective HSP length: 128
effective length of query: 878
effective length of database: 122,498,611
effective search space: 107553780458
effective search space used: 107553780458
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)