Query psy7894
Match_columns 1006
No_of_seqs 555 out of 2070
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 21:34:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 1.5E-72 5.1E-77 643.7 40.1 375 168-543 1-405 (428)
2 2hbj_A Exosome complex exonucl 100.0 5.7E-67 2E-71 595.7 34.9 367 168-540 2-386 (410)
3 1yt3_A Ribonuclease D, RNAse D 100.0 2.7E-48 9.2E-53 436.8 38.6 366 248-641 2-371 (375)
4 3cym_A Uncharacterized protein 100.0 4.5E-46 1.5E-50 427.4 34.2 394 235-641 6-433 (440)
5 2e6m_A Werner syndrome ATP-dep 99.9 4.7E-26 1.6E-30 235.3 15.4 173 248-420 16-199 (208)
6 1vk0_A Hypothetical protein; h 99.9 1.7E-25 5.9E-30 233.4 12.0 164 250-414 22-205 (206)
7 2kfn_A Klenow fragment of DNA 99.7 2.4E-17 8.3E-22 196.2 21.1 172 247-420 5-198 (605)
8 3pv8_A DNA polymerase I; DNA p 99.7 2.1E-16 7E-21 187.6 13.0 170 242-420 10-185 (592)
9 1x9m_A DNA polymerase; DNA plo 99.5 4.3E-14 1.5E-18 170.9 8.2 148 270-420 1-187 (698)
10 1wud_A ATP-dependent DNA helic 99.3 1.7E-12 5.7E-17 118.6 6.5 75 464-538 10-84 (89)
11 4dfk_A DNA polymerase I, therm 99.3 5.3E-12 1.8E-16 148.6 9.0 121 269-419 11-132 (540)
12 3saf_A Exosome component 10; e 99.3 3.8E-12 1.3E-16 146.0 7.4 101 568-668 323-423 (428)
13 2rhf_A DNA helicase RECQ; HRDC 99.2 1.1E-11 3.9E-16 110.0 8.0 71 466-536 4-74 (77)
14 2kv2_A Bloom syndrome protein; 99.2 6.2E-11 2.1E-15 107.3 8.4 74 464-537 4-77 (85)
15 2rrd_A BLM HRDC domain, HRDC d 99.1 5.8E-11 2E-15 111.1 8.0 75 463-537 18-92 (101)
16 1wud_A ATP-dependent DNA helic 99.1 1.3E-10 4.5E-15 106.1 7.4 74 572-645 11-84 (89)
17 2e1f_A Werner syndrome ATP-dep 99.0 3.6E-10 1.2E-14 106.1 8.2 73 465-538 13-85 (103)
18 2dgz_A Werner syndrome protein 99.0 4E-10 1.4E-14 107.4 8.7 75 465-540 20-94 (113)
19 2rhf_A DNA helicase RECQ; HRDC 99.0 8.6E-10 2.9E-14 97.8 7.9 71 573-643 4-74 (77)
20 2kv2_A Bloom syndrome protein; 98.9 1.9E-09 6.6E-14 97.5 8.0 73 572-644 5-77 (85)
21 2rrd_A BLM HRDC domain, HRDC d 98.9 1.7E-09 5.9E-14 101.1 7.8 74 571-644 19-92 (101)
22 2hbj_A Exosome complex exonucl 98.8 2.1E-09 7.2E-14 122.7 7.0 80 568-647 307-386 (410)
23 1yt3_A Ribonuclease D, RNAse D 98.8 4.5E-09 1.5E-13 118.3 9.3 82 568-650 208-289 (375)
24 2e1f_A Werner syndrome ATP-dep 98.7 1.4E-08 4.7E-13 95.4 7.8 72 572-644 13-84 (103)
25 2dgz_A Werner syndrome protein 98.7 1.6E-08 5.5E-13 96.4 7.3 73 572-645 20-92 (113)
26 3cym_A Uncharacterized protein 98.5 3.9E-08 1.3E-12 113.3 4.7 81 570-650 230-329 (440)
27 3v9w_A Ribonuclease T; DEDD nu 98.4 1.2E-06 4.2E-11 91.9 12.0 154 251-420 20-225 (235)
28 1bgx_T TAQ DNA polymerase; DNA 98.3 9.4E-07 3.2E-11 109.0 8.1 118 267-417 303-421 (832)
29 2p1j_A POLIII, DNA polymerase 97.4 0.00062 2.1E-08 69.0 10.8 136 266-420 10-180 (186)
30 2f96_A Ribonuclease T; RNAse, 97.2 0.0041 1.4E-07 64.6 14.3 144 261-420 22-217 (224)
31 3mxm_B Three prime repair exon 97.2 0.0018 6E-08 68.8 11.6 93 309-417 104-216 (242)
32 1wlj_A Interferon stimulated g 97.2 0.0041 1.4E-07 63.2 13.7 135 268-420 5-173 (189)
33 3u3y_B Three prime repair exon 96.7 0.012 4.1E-07 65.1 13.2 92 310-417 105-216 (314)
34 1y97_A Three prime repair exon 96.7 0.008 2.7E-07 62.8 11.3 92 310-417 100-211 (238)
35 2gui_A DNA polymerase III epsi 96.5 0.033 1.1E-06 56.2 14.4 89 310-415 86-184 (194)
36 1zbh_A 3'-5' exonuclease ERI1; 94.8 0.24 8.1E-06 54.0 13.4 90 310-415 157-262 (299)
37 2qxf_A Exodeoxyribonuclease I; 94.7 0.3 1E-05 56.9 14.5 133 266-415 7-200 (482)
38 1w0h_A 3'-5' exonuclease ERI1; 93.7 0.36 1.2E-05 48.8 11.2 90 310-415 89-194 (204)
39 1d8b_A SGS1 RECQ helicase; fiv 93.6 0.17 5.9E-06 45.4 7.2 65 469-533 8-74 (81)
40 1zbu_A ERI-1 homolog, 3'-5' ex 92.3 0.59 2E-05 52.3 11.0 90 310-415 207-312 (349)
41 2xri_A ERI1 exoribonuclease 3; 92.2 1.2 4.3E-05 46.0 12.8 85 310-413 108-211 (224)
42 1d8b_A SGS1 RECQ helicase; fiv 90.9 0.72 2.4E-05 41.5 7.7 69 574-642 6-76 (81)
43 1qht_A Protein (DNA polymerase 88.2 6.5 0.00022 48.4 16.2 144 267-413 134-327 (775)
44 3cg7_A CRN-4, cell death-relat 87.6 1.8 6.3E-05 47.3 9.9 87 310-414 99-207 (308)
45 2igi_A Oligoribonuclease; RNAs 86.8 5.7 0.00019 39.3 12.1 82 310-416 85-177 (180)
46 2gbz_A Oligoribonuclease; ORN, 82.4 10 0.00035 38.2 11.9 86 311-418 90-183 (194)
47 1noy_A Protein (DNA polymerase 77.9 11 0.00038 42.3 11.4 100 310-412 195-335 (388)
48 3tr8_A Oligoribonuclease; tran 70.4 23 0.00078 36.0 10.5 49 311-359 90-149 (186)
49 2py5_A DNA polymerase; protein 69.1 40 0.0014 40.0 13.7 131 268-411 6-179 (575)
50 3ikm_A DNA polymerase subunit 58.5 7.2 0.00025 49.4 4.7 98 322-420 195-351 (1172)
51 1s5j_A DNA polymerase I; repli 50.7 1.3E+02 0.0044 37.4 14.1 99 309-411 260-388 (847)
52 3k59_A POL II, DNA polymerase 49.9 91 0.0031 38.5 12.4 100 310-412 208-349 (786)
53 4gmj_B CCR4-NOT transcription 37.2 65 0.0022 35.0 7.6 83 319-418 148-247 (285)
54 3fh2_A Probable ATP-dependent 34.8 3E+02 0.01 26.0 14.4 138 461-636 6-143 (146)
55 3d45_A Poly(A)-specific ribonu 34.0 61 0.0021 37.9 7.2 103 312-417 267-393 (507)
56 2a1r_A Poly(A)-specific ribonu 33.6 69 0.0024 36.6 7.4 101 312-417 272-398 (430)
57 2d5r_A CCR4-NOT transcription 29.1 1E+02 0.0035 33.0 7.3 57 345-417 180-236 (252)
58 3qex_A DNA polymerase, GP43; d 27.1 87 0.003 39.3 7.2 101 310-412 198-338 (903)
59 2y1q_A CLPC N-domain, negative 26.9 3.9E+02 0.013 24.9 10.9 119 480-634 20-139 (150)
60 3iay_A DNA polymerase delta ca 26.0 1.2E+02 0.004 38.2 8.1 102 310-412 317-465 (919)
61 2gv9_A DNA polymerase; polymer 23.0 79 0.0027 40.9 5.9 103 310-413 405-551 (1193)
62 3fes_A ATP-dependent CLP endop 20.9 5.2E+02 0.018 24.2 10.3 135 461-634 7-141 (145)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=1.5e-72 Score=643.73 Aligned_cols=375 Identities=51% Similarity=0.901 Sum_probs=354.6
Q ss_pred CCCCcccccCccCCCCCCCCCcccCCCCCCCCChhhhhhhccc-----------------------------cccccCCC
Q psy7894 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD-----------------------------AIESFCHP 218 (1006)
Q Consensus 168 ~i~kPQ~~F~~~vDNs~~~pf~p~l~~Kpna~~pl~~~~~~~~-----------------------------~~~~~~HP 218 (1006)
.|.|||+.|+++||||+ +||+|+|++||||++||+.++.... ....|.||
T Consensus 1 ~i~~pq~~f~~~~dn~~-~p~~p~~~~kp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp 79 (428)
T 3saf_A 1 SIIRPQLKFREKIDNSN-TPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHP 79 (428)
T ss_dssp CCCCGGGGCSSCCCCSS-SCCCCCCCCCTTCSSCCCGGGSGGGC-----------------------------CCSSSCT
T ss_pred CCCCchhccCCCCCCCC-CCCCCccCCCCcccCCHHHHhhhhhhcccccCcccccccchhhhccccccccccCCCCCCCC
Confidence 38999999999999998 8999999999999999998664321 24579999
Q ss_pred cHhhhccCCCCccccccCCCCcCCCCCCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCce
Q psy7894 219 YEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 298 (1006)
Q Consensus 219 Ye~Ei~~~~~p~~~~~~~~p~~~~p~~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~ 298 (1006)
|++||.+++||++++..++|+.+.|+++++|.+|+|.++|.++++.+..++.||||+|+++.++|.+.+|+|||++++++
T Consensus 80 y~~ei~~~~~~~~~~~~~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~ 159 (428)
T 3saf_A 80 YQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTED 159 (428)
T ss_dssp THHHHHTCCCCHHHHSCCCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCE
T ss_pred hHHHHhcCCCCHHHhCcCCCCCCCCCCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcchhhhHHHHHHHHcCCCceeeecchhhHHHHHHHHhCCccCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCc
Q psy7894 299 YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK 378 (1006)
Q Consensus 299 yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK 378 (1006)
|+||++.+..++..|+++|+|++|.||+||+++|+.+|++.+|+.+.++||||+|+|+||++++||+.|+++|||+.++|
T Consensus 160 ~lidpl~l~~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 160 FIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp EEEETTTTGGGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred EEEEeccchhhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCc
Confidence 99999887657789999999999999999999999999889999999999999999999998899999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcCCCCCChhhhHHHHHh
Q psy7894 379 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS 458 (1006)
Q Consensus 379 ~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~~~~~~~~~~~l~~k 458 (1006)
+.+.+||+.|||+.+|+.||+.||+++++||+.|..+|.+.|.+..+|+++++++|+.+|+++|+++.+++..|.+++++
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRK 319 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHHHHT
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999875567999999999999999999888888899999887
Q ss_pred hc-cCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHh
Q psy7894 459 HA-LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537 (1006)
Q Consensus 459 ~~-~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar 537 (1006)
.+ .++++++++|++|++||+++||++|+|+++||+|++|++||+.+|+|..+|.+|+|+.++.+|+||++|+++|++|+
T Consensus 320 ~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~ 399 (428)
T 3saf_A 320 QKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAR 399 (428)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 76 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q psy7894 538 LQSLTK 543 (1006)
Q Consensus 538 ~~p~~~ 543 (1006)
+.|..+
T Consensus 400 ~~p~~~ 405 (428)
T 3saf_A 400 EMPLLK 405 (428)
T ss_dssp TSCCCH
T ss_pred hCCCcC
Confidence 988763
No 2
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00 E-value=5.7e-67 Score=595.66 Aligned_cols=367 Identities=43% Similarity=0.717 Sum_probs=334.7
Q ss_pred CCCCcccccCccCCCCCCCCCcccCCCCCCCCChhhhhhhc----cccccccCCCcHhhhccCCCCccccccCCCCcCCC
Q psy7894 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK----YDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALP 243 (1006)
Q Consensus 168 ~i~kPQ~~F~~~vDNs~~~pf~p~l~~Kpna~~pl~~~~~~----~~~~~~~~HPYe~Ei~~~~~p~~~~~~~~p~~~~p 243 (1006)
+|+|||+.|+++||||+++||+|+|++||||++||+.++.. .++...|.|||++||.++.||+++++.++|.++.+
T Consensus 2 ~~~~pq~~f~~~~dn~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~~~~~~~ 81 (410)
T 2hbj_A 2 MVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKS 81 (410)
T ss_dssp CCCCGGGGCSSCCCCCCCSSCCCCCCCCTTCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCCCGGGSSCCCCCCCCC
T ss_pred CCCCchhhcCCCCCCCCCCCCccccccCCcccCCHHHHhccCcccccCCccCCCCcHHHHhhCCCCHHHhccCCCCCCCC
Confidence 69999999999999998899999999999999999987632 22467899999999999999999999999999999
Q ss_pred CCCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCce
Q psy7894 244 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIV 323 (1006)
Q Consensus 244 ~~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~Iv 323 (1006)
++++++.+|++.++|..+++.|..++.||||+|++++++|.+.+|+|||++++.+||||++.+...+..|+++|+|++|.
T Consensus 82 ~~~~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~i~ 161 (410)
T 2hbj_A 82 WDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIV 161 (410)
T ss_dssp GGGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSE
T ss_pred cCCCCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhhhHHHHHHHHcCCCce
Confidence 99999999999999999999998889999999999988889999999999988899999866644567899999999999
Q ss_pred eeecchhhHHHHHHHHhCCccCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchh
Q psy7894 324 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403 (1006)
Q Consensus 324 KV~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~ 403 (1006)
||+||+++|+.+|++++|+.+.++|||++|+|+||++++||++|+++|||+.++|+.+.+||..|||+++|+.||+.||+
T Consensus 162 KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~ 241 (410)
T 2hbj_A 162 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTH 241 (410)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcCC--------------CCCChhhhHHHHHhhccCCHHHHHH
Q psy7894 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK--------------PVFNEEGYMNIFRSHALLNNQQKYA 469 (1006)
Q Consensus 404 yLL~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~--------------~~~~~~~~~~l~~k~~~L~~~qlav 469 (1006)
+++.||+.|..+|.+.| ++.|++++|+.+|.++|+. ...+++.|.++.+. ..++++++++
T Consensus 242 ~ll~L~~~L~~~L~~~g-----~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l 315 (410)
T 2hbj_A 242 FLLNIYDQLRNKLIESN-----KLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQ-YNIPPEREVL 315 (410)
T ss_dssp THHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSSCSSC-SCCCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcC-----chHhHHHHHHHHHHHHhhhccccccccccccccCCchhHHHHHHhhh-cCCCHHHHHH
Confidence 99999999999999875 5788999999999987742 11234557655221 2688899999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcC
Q psy7894 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540 (1006)
Q Consensus 470 lr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p 540 (1006)
|++|++||+++||++|+|+++||+|++|++||+.+|+|.++|.+++|+.+..+++||++|+++|+++++.+
T Consensus 316 ~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~~~~~ 386 (410)
T 2hbj_A 316 VRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNI 386 (410)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997654
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=2.7e-48 Score=436.77 Aligned_cols=366 Identities=20% Similarity=0.265 Sum_probs=309.2
Q ss_pred CcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCceeeec
Q psy7894 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 327 (1006)
Q Consensus 248 ~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvKV~H 327 (1006)
+|.+|+|.+++..+++.+...+.||||+|+.+.++|.+.+|+|||++++.+||||+..+. ++..|+++|+|++|.||+|
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~Kv~h 80 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLH 80 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEEEES
T ss_pred CeEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCceEEEe
Confidence 467899999999999999888999999999998888999999999998889999976552 5678999999999999999
Q ss_pred chhhHHHHHHHHhCCccCeeechHhHHHhCCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHH
Q psy7894 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406 (1006)
Q Consensus 328 gak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~-~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL 406 (1006)
|+++|+.+|++++|+.+.++|||++|+|+||++ ++||+.|+++|||+.++|+.+.+||..|||+.+|+.||+.||++++
T Consensus 81 ~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~ 160 (375)
T 1yt3_A 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160 (375)
T ss_dssp SCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHH
T ss_pred eHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999878999999999999999999996 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcCCCCCChhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy7894 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 486 (1006)
Q Consensus 407 ~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~~~~~~~~~~~l~~k~~~L~~~qlavlr~L~~WRD~~AR~~De 486 (1006)
.||+.|..+|.+.| ++.+++++++..+...+... .++..|.++.+ ...|+++++++|++|++||+++||++|+
T Consensus 161 ~L~~~L~~~L~~~g-----~~~l~~~e~E~pl~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~~~~~L~~wR~~~A~~~d~ 233 (375)
T 1yt3_A 161 PITAKLMVETEASG-----WLPAALDECRLMQMRRQEVV-APEDAWRDITN-AWQLRTRQLACLQLLADWRLRKARERDL 233 (375)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHCCC-CGGGGGGGSTT-GGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC-----cHHHHHHHHHHHHhhcccCC-CchHHHHhccC-cccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998765 45667888887777665432 34566766522 2268999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcCCCCCccccCCccchhhhhhcccCCCC
Q psy7894 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPP 566 (1006)
Q Consensus 487 p~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p~~~~i~~~~ps~~gir~~q~q~~~pP 566 (1006)
|+++||+|++|++||+.+|+|.++|.++ |+.+..+++||++|+++|.++++.|.... |...+ .+|
T Consensus 234 p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~~~g~~~l~~i~~~~~~~~~~~-p~~~~-------------~~~ 298 (375)
T 1yt3_A 234 AVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDAL-PQPML-------------NLM 298 (375)
T ss_dssp CGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSCGGGS-CCCCC-------------CGG
T ss_pred CcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHHHHHHHHHHHHHHHHhCCHhhC-CCCCC-------------CCC
Confidence 9999999999999999999999999999 99999999999999999999999876532 11100 011
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCCh--hhhhhcCCCChHHHHh-hHHHHHHHHH
Q psy7894 567 HDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI--QGIFACCNPVPQTVKE-HVLDIHAIIL 641 (1006)
Q Consensus 567 ~ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l--~~L~~~~~~~p~~VR~-~g~eLl~lI~ 641 (1006)
..+...++++.|+.|+..+|++.++++..|+++..|.+|+...|... ..+. ....++-+. -|..|+.++.
T Consensus 299 --~~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~---~~l~~Wr~~~~~~~l~~~l~ 371 (375)
T 1yt3_A 299 --DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP---ELISGWRGELMAEALHNLLQ 371 (375)
T ss_dssp --GSTTHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHHTTCSCCSSCC---GGGSHHHHHHHHHHHHHHHT
T ss_pred --CChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCHHHHHHHHhhcccCCCcchhh---hhhcchHHHHHHHHHHHHHh
Confidence 13457899999999999999999999999999999999997533111 1111 111244444 3677777764
No 4
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=100.00 E-value=4.5e-46 Score=427.40 Aligned_cols=394 Identities=19% Similarity=0.203 Sum_probs=316.2
Q ss_pred cCCCCcCCCCCCCCcEEeCCHHHHHHHHHHHhcC-CeEEEEeeeccCCccCCcEEEEEEEeCC-ceEEEeCcchh---hh
Q psy7894 235 CEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQ-QEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLR---ED 309 (1006)
Q Consensus 235 ~~~p~~~~p~~~t~~~lIdT~e~L~~lle~L~~a-~~IAVDtE~~~~rty~g~lcLIQISt~~-~~yIID~laL~---~~ 309 (1006)
.++| .+.|+++++ .+|++.++|.++++.|..+ +.||||+|+++.++|.+.+|+|||++.+ .+|+||++.+. .+
T Consensus 6 ~~~~-l~~p~~~~~-~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~ 83 (440)
T 3cym_A 6 EPKL-LAEPREGVP-NVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGAD 83 (440)
T ss_dssp CCEE-CCSCTTCCC-CEECSHHHHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCC
T ss_pred CCCC-CCCCCCCCC-EeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccC
Confidence 3444 567888877 6899999999999998877 8899999999888889999999999865 48999985432 34
Q ss_pred HHHHHHHHcCCCceeeecchhhHHHHHHHHhCCccCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCC
Q psy7894 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 389 (1006)
Q Consensus 310 L~~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RP 389 (1006)
+..|+++|+|+ .||+|++++|+.+|+ ++|+.+.++|||++|+|+||++++||+.|+++|||+.++|+.+.+||..||
T Consensus 84 l~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw~~rp 160 (440)
T 3cym_A 84 WNDFNRAVGDA--VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRP 160 (440)
T ss_dssp HHHHHHHHTTC--EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCTTCSS
T ss_pred HHHHHHHHCCC--CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCCCCCHHHHHHHHhCCCcccccccCCCcCCC
Confidence 67899999997 699999999999995 999999999999999999999789999999999999999999999999999
Q ss_pred CChHHHHHHHhchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcCCCCCChhhhHHHHHhhccC--CHHHH
Q psy7894 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALL--NNQQK 467 (1006)
Q Consensus 390 Ls~eql~YAA~DA~yLL~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~~~~~~~~~~~l~~k~~~L--~~~ql 467 (1006)
|+.+|+.||+.||++++.||+.|..+|.+.| ++.++.+++..+|...+.++......|.++.+.. .+ +++|+
T Consensus 161 Ls~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g-----~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l 234 (440)
T 3cym_A 161 LPRDWRNYAALDVELLIELETKMRAELKRQG-----KMEWAQEEFDYALKEGLGPRKEHLIPWMHVSHIT-EVMRDRQAL 234 (440)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHSSSCCCCSSGGGCCTTGG-GGTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHHHHhccccccCCCchHHHHHhcccc-ccCCCHHHH
Confidence 9999999999999999999999999999876 4566778888888877643444556675442222 45 99999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhH------------------Hh-hHHH
Q psy7894 468 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV------------------KE-HVLD 528 (1006)
Q Consensus 468 avlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~v------------------R~-~~~e 528 (1006)
++|++|++||+++||++|+|+++||+|.+|++||+.+|+|.++|.++.|+....+ |+ |+..
T Consensus 235 ~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 314 (440)
T 3cym_A 235 AIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKPSM 314 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999987655444 88 9999
Q ss_pred HHHHHHHHhhcCCCCCccccCCccchhhhhhcccCCCCC-----CCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHH
Q psy7894 529 IHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPH-----DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHM 603 (1006)
Q Consensus 529 il~iI~~Ar~~p~~~~i~~~~ps~~gir~~q~q~~~pP~-----ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~ 603 (1006)
|+++|++|++.|.... |...++ .++....+....||. ...+....+++.|+.++..+|++.++++..|++++.
T Consensus 315 ~l~~i~~~~~~~~~~~-P~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~ 392 (440)
T 3cym_A 315 WKNIIQDALALPPSEW-PDVDGG-AARRHESQSASAPKSIRVWKERYPERLQVLNRVRKAVSQIAEDTRTPVEIVIKPQY 392 (440)
T ss_dssp HHHHHHHHHTSCGGGS-CC---------------CCCSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTCCHHHHSCHHH
T ss_pred HHHHHHHHHhCCHhhC-CCCccc-ccccCccccccCCCCcccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHcCCHHH
Confidence 9999999999886533 211000 000000000001111 223567899999999999999999999999999999
Q ss_pred HHHHHHhC---CCChhhhhhcCCCChHHHHhhHHHHHHHHH
Q psy7894 604 LLQMAQSI---PRDIQGIFACCNPVPQTVKEHVLDIHAIIL 641 (1006)
Q Consensus 604 L~~IA~~~---P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~ 641 (1006)
|.+|+-.. +.++.+++...|..+=.+..-|..|+..|.
T Consensus 393 l~~l~~~~~~~~~~~~~~l~~~g~~~Wr~~~~~~~~~~~~~ 433 (440)
T 3cym_A 393 LRNLCWTDEPRKRDVARFLSEQGARDWQVSLVAESVSRAIE 433 (440)
T ss_dssp HHHHHCSSCGGGCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCCCChhhHhHHHhhccCCCchHHHHHHHHHHHHh
Confidence 99999432 334555555555665555556777766654
No 5
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.93 E-value=4.7e-26 Score=235.26 Aligned_cols=173 Identities=21% Similarity=0.242 Sum_probs=149.6
Q ss_pred CcEEeCCHHHHH----HHHHHHhcCCeEEEEeeeccC--CccCCcEEEEEEEeC-CceEEEeCcchhhhHHHHHHHHcCC
Q psy7894 248 PLMMITEPEQVT----QLVSELKQQQEIAIDLEYHNY--RSYQGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDK 320 (1006)
Q Consensus 248 ~~~lIdT~e~L~----~lle~L~~a~~IAVDtE~~~~--rty~g~lcLIQISt~-~~~yIID~laL~~~L~~L~elLedp 320 (1006)
.+.+|+|.+++. .++..+...+.+|+|+|+.+. +++.+.+|+|||++. +.+|+||+..+......|+++|+|+
T Consensus 16 ~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~~L~~lL~d~ 95 (208)
T 2e6m_A 16 SIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENK 95 (208)
T ss_dssp EEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCHHHHHHHTCT
T ss_pred cEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccchHHHHHHhcCC
Confidence 478999999998 555666677889999999876 566789999999985 5789998765544457899999999
Q ss_pred CceeeecchhhHHHHHHHHhCCccCeeec-hHhHHHhCCCC-CccHHHHHHHHcCCCCCc--ccccccCCCCCCChHHHH
Q psy7894 321 NIVKVFHGADSDIKWLQKDFGLYVVGMFD-THQACKFLPMP-RQSLAYLLKHYCDVDSDK--TFQLFDWRHRPLPEPAIQ 396 (1006)
Q Consensus 321 ~IvKV~Hgak~Dl~~L~rd~GI~~~nlFD-TqlAAyLLg~~-~~SLa~Lve~yLgv~LdK--~~q~sDW~~RPLs~eql~ 396 (1006)
.|.||+||++.|+.+|.+++|+.+.++|| |++|+|+|++. .+||+.|+++|||..+.| ..+.+||..|||+.+|+.
T Consensus 96 ~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~ 175 (208)
T 2e6m_A 96 SIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKL 175 (208)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHH
T ss_pred CceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHH
Confidence 99999999999999998779999999999 99999999984 689999999999998854 568899999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 397 YARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 397 YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
||+.||++++.||+.|..+|.+.+
T Consensus 176 YAa~Da~~~~~L~~~L~~~L~~~~ 199 (208)
T 2e6m_A 176 YAATDAYAGLIIYQKLGNLGDTVQ 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999998775
No 6
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.92 E-value=1.7e-25 Score=233.44 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=139.5
Q ss_pred EEeCCHHHHHHHHHHH------hcCCeEEEEeeeccC------CccC--CcEEEEEEEeCCceEEEeCc-chhhhHHHHH
Q psy7894 250 MMITEPEQVTQLVSEL------KQQQEIAIDLEYHNY------RSYQ--GYTCLMQISTRDKDYIVDTL-KLREDLEVLN 314 (1006)
Q Consensus 250 ~lIdT~e~L~~lle~L------~~a~~IAVDtE~~~~------rty~--g~lcLIQISt~~~~yIID~l-aL~~~L~~L~ 314 (1006)
.+|.+.+++..+++.+ .....||||+||... ++++ +.+|||||++++.++|||+. .+...+..|.
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~~L~ 101 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLY 101 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHHHH
T ss_pred EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCccHHHHH
Confidence 4566666677777766 456789999999842 2455 48999999999999999872 2233566689
Q ss_pred HHHcCCCceeeecchhhHHHHHHHHhCCccCeeechH-hHHHhCCC---CCccHHHHHHHHcCCCC-CcccccccCCCCC
Q psy7894 315 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTH-QACKFLPM---PRQSLAYLLKHYCDVDS-DKTFQLFDWRHRP 389 (1006)
Q Consensus 315 elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~nlFDTq-lAAyLLg~---~~~SLa~Lve~yLgv~L-dK~~q~sDW~~RP 389 (1006)
++|+||+|+||||++++|+..|++++|+.+.++|||+ +|+.++|. ..+||+.|++++||+.+ +|..+++||.. |
T Consensus 102 ~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~-p 180 (206)
T 1vk0_A 102 RFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK-A 180 (206)
T ss_dssp HHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG-S
T ss_pred HHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC-c
Confidence 9999999999999999999999999999999999997 88888886 36899999999999999 44669999999 9
Q ss_pred CChHHHHHHHhchhHHHHHHHHHHH
Q psy7894 390 LPEPAIQYARTDTHYLLYVYDCMKL 414 (1006)
Q Consensus 390 Ls~eql~YAA~DA~yLL~Lyd~L~~ 414 (1006)
|+++|+.|||.||+|++.||+.|..
T Consensus 181 Ls~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 181 GPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999964
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.75 E-value=2.4e-17 Score=196.19 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=145.7
Q ss_pred CCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEe-CCceEEE--eC--------cchhhhHHHHHH
Q psy7894 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST-RDKDYIV--DT--------LKLREDLEVLNE 315 (1006)
Q Consensus 247 t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt-~~~~yII--D~--------laL~~~L~~L~e 315 (1006)
..|.+|++.+++.++++.|...+.++||+|+.+.+++.+.+|+||+++ .+..++| +. +.+...+..|.+
T Consensus 5 ~~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~ 84 (605)
T 2kfn_A 5 DNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84 (605)
T ss_dssp SSSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHH
T ss_pred hheEEecCHHHHHHHHHhcccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHHH
Confidence 457789999999999999888888999999999988889999999997 4445555 22 112334678999
Q ss_pred HHcCCCceeeecchhhHHHHHHHHhCCccCe-eechHhHHHhCCCC--CccHHHHHHHHcCCCC-------CcccccccC
Q psy7894 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACKFLPMP--RQSLAYLLKHYCDVDS-------DKTFQLFDW 385 (1006)
Q Consensus 316 lLedp~IvKV~Hgak~Dl~~L~rd~GI~~~n-lFDTqlAAyLLg~~--~~SLa~Lve~yLgv~L-------dK~~q~sDW 385 (1006)
+|+|+++.||+||+++|+.+|. .+|+.+.+ +|||++|+|+|++. +++|+.|+++|||+.. .|+.+.++|
T Consensus 85 ~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~ 163 (605)
T 2kfn_A 85 LLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTF 163 (605)
T ss_dssp HHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCG
T ss_pred HHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCc
Confidence 9999999999999999999995 68998875 89999999999985 6999999999998865 356666789
Q ss_pred CCCCCChHHHHHHHhchhHHHHHHHHHHHHHHH-hc
Q psy7894 386 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA-AA 420 (1006)
Q Consensus 386 ~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e-~g 420 (1006)
..+|+ +++..||+.||.+++.||..|..+|.+ .+
T Consensus 164 ~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~ 198 (605)
T 2kfn_A 164 NQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKG 198 (605)
T ss_dssp GGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred ccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888 679999999999999999999999876 53
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.66 E-value=2.1e-16 Score=187.62 Aligned_cols=170 Identities=11% Similarity=0.009 Sum_probs=138.7
Q ss_pred CCCCCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCC
Q psy7894 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKN 321 (1006)
Q Consensus 242 ~p~~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~ 321 (1006)
+|+-...+..+++.++ .+ + ....++|+|+.+.+++.+.+|+||+++.+++|+|+... ...+..|.++|+|++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~---~--~~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~-~~~l~~Lk~lLed~~ 81 (592)
T 3pv8_A 10 KPLAKMAFTLADRVTE--EM---L--ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPET-ALADPQFVAWLGDET 81 (592)
T ss_dssp ----CCCCEECSSCCG--GG---G--CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHH-HTTCHHHHHHHTCTT
T ss_pred hhHHHhHHHHhhccch--hh---h--ccCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccch-hhHHHHHHHHHhCCC
Confidence 4555556666655333 12 2 35679999999999999999999999998888886532 135678999999999
Q ss_pred ceeeecchhhHHHHHHHHhCCccC-eeechHhHHHhCCCC--CccHHHHHHHHcCCCCCcccccccCC---CCCCChHHH
Q psy7894 322 IVKVFHGADSDIKWLQKDFGLYVV-GMFDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWR---HRPLPEPAI 395 (1006)
Q Consensus 322 IvKV~Hgak~Dl~~L~rd~GI~~~-nlFDTqlAAyLLg~~--~~SLa~Lve~yLgv~LdK~~q~sDW~---~RPLs~eql 395 (1006)
+.||+||+++|+.+|. .+|+.+. .+||||+|+|||++. +++|++|+.+|||+.+++..+..+|. .+|..+.+.
T Consensus 82 i~KV~hn~K~Dl~vL~-~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~ 160 (592)
T 3pv8_A 82 KKKSMFDSKRAAVALK-WKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLA 160 (592)
T ss_dssp SEEEESSHHHHHHHHH-HTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHH
T ss_pred CeEEEechHHHHHHHH-HcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHH
Confidence 9999999999999994 6899885 699999999999985 69999999999999998777667775 355668889
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 396 QYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 396 ~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
.||+.||.++++||+.|..+|.+.+
T Consensus 161 ~YAa~DA~~l~~L~~~L~~~L~e~~ 185 (592)
T 3pv8_A 161 EHLVRKAAAIWELERPFLDELRRNE 185 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999998764
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.46 E-value=4.3e-14 Score=170.89 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=123.9
Q ss_pred eEEEEeeeccCCccCCcEEEEEEEeC--CceEEEeCcchhhhHHHHHHHHcCCCceeeecch-hhHHHHHHHHh------
Q psy7894 270 EIAIDLEYHNYRSYQGYTCLMQISTR--DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA-DSDIKWLQKDF------ 340 (1006)
Q Consensus 270 ~IAVDtE~~~~rty~g~lcLIQISt~--~~~yIID~laL~~~L~~L~elLedp~IvKV~Hga-k~Dl~~L~rd~------ 340 (1006)
.|+||+|+.++..+.+.+|++||... +..+++|+..+...+..|.++|+ +.+.||+||+ ++|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~ 79 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNR 79 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccC
Confidence 37999999999888899999999984 46788998877667889999999 9999999999 99999997654
Q ss_pred CCccC--eeechHhHHHhCCCC--CccHHHHHHHHc-------CCCC-----C-----------cccc--c-ccCCCCCC
Q psy7894 341 GLYVV--GMFDTHQACKFLPMP--RQSLAYLLKHYC-------DVDS-----D-----------KTFQ--L-FDWRHRPL 390 (1006)
Q Consensus 341 GI~~~--nlFDTqlAAyLLg~~--~~SLa~Lve~yL-------gv~L-----d-----------K~~q--~-sDW~~RPL 390 (1006)
|+.+. .+|||++|+|+|++. +++|+.|+.+|| |..+ + |+.+ . .+|.. +
T Consensus 80 Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~ 157 (698)
T 1x9m_A 80 EFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--F 157 (698)
T ss_dssp CCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--C
T ss_pred CccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--c
Confidence 88765 599999999999984 689999999998 4332 1 2221 1 28864 6
Q ss_pred ChHHHHHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 391 PEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 391 s~eql~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
++.+..||+.||.+++.||..|..+|.+.+
T Consensus 158 ~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~ 187 (698)
T 1x9m_A 158 NEEMMDYNVQDVVVTKALLEKLLSDKHYFP 187 (698)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999999998765
No 10
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.31 E-value=1.7e-12 Score=118.63 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhh
Q psy7894 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538 (1006)
Q Consensus 464 ~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~ 538 (1006)
+.++++|++|+.||+++|++.|+||++||+|.+|++||+.+|+|.++|..+.|+.+..+++||++|+++|..+.+
T Consensus 10 ~~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 10 NYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999998864
No 11
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.26 E-value=5.3e-12 Score=148.57 Aligned_cols=121 Identities=7% Similarity=-0.071 Sum_probs=105.7
Q ss_pred CeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCceeeecchhhHHHHHHHHhCCccCeee
Q psy7894 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348 (1006)
Q Consensus 269 ~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~nlF 348 (1006)
+.+|+|||+.+.+++.+.+|++|+++++.+|+|| ..+..|.++|+| +.||+||+++|+. .+|+.+..+|
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~f 79 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPPGD 79 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBCC
T ss_pred CceEEEEEecCCccCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCcce
Confidence 4589999999999999999999999988888876 256789999998 8899999999999 5788877889
Q ss_pred chHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHH-HHh
Q psy7894 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-SAA 419 (1006)
Q Consensus 349 DTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL-~e~ 419 (1006)
||++|+|+|++.+++|+.|+++|++. ++| +|..||.+++.||..|..+| .+.
T Consensus 80 DT~laAyLL~p~~~~L~~La~~yl~~-~gk------------------~a~~DA~~t~~L~~~L~~~L~~~~ 132 (540)
T 4dfk_A 80 DPMLLAYLLDPSNTTPEGVARRYGGE-WTE------------------EAGERAALSERLFANLWGRLEGEE 132 (540)
T ss_dssp CHHHHHHHHCTTCCCHHHHHHHHTSC-CCS------------------CHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred eHHHHHHHhCCCCCCHHHHHHHHhhh-hcc------------------chHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999889999999999986 221 36789999999999999999 543
No 12
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.26 E-value=3.8e-12 Score=145.99 Aligned_cols=101 Identities=43% Similarity=0.753 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhcCC
Q psy7894 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQP 647 (1006)
Q Consensus 568 ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~~~ 647 (1006)
.++++|+++|++|+.||+++||++|+|+++|+++++|.+||+.+|++.++|.+|+|+.+..+|+||.+|+++|..|++.|
T Consensus 323 ~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~~~p 402 (428)
T 3saf_A 323 HLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMP 402 (428)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHHTSC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCccccccccccc
Q psy7894 648 LTKPVEKLQPSLDGMKKKKQQ 668 (1006)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~ 668 (1006)
..+++....++.+++++++++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~ 423 (428)
T 3saf_A 403 LLKSEVAAGVKKSGPLPSAER 423 (428)
T ss_dssp CCHHHHCC-------------
T ss_pred CcCcchhhhhcccCCCCCccc
Confidence 999998788899999888665
No 13
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=99.24 E-value=1.1e-11 Score=109.96 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHH
Q psy7894 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536 (1006)
Q Consensus 466 qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~A 536 (1006)
..++|++|+.||+++|++.|+||++||+|.+|.+||+.+|+|.++|..+.|+.+..+++||++|+++|..+
T Consensus 4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~ 74 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999875
No 14
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=99.15 E-value=6.2e-11 Score=107.30 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHh
Q psy7894 464 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537 (1006)
Q Consensus 464 ~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar 537 (1006)
+....+|++|.+||+++|++.|+|+++||+|.+|.+||+.+|+|.++|..+.|+....+++||.+|+++|..+.
T Consensus 4 ~~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 77 (85)
T 2kv2_A 4 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998874
No 15
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=5.8e-11 Score=111.07 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHh
Q psy7894 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537 (1006)
Q Consensus 463 ~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar 537 (1006)
+....++|++|.+||+++|++.|+|+++||+|.+|.+||+.+|+|.++|..+.|+....+++||++|+++|..+.
T Consensus 18 ~e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~ 92 (101)
T 2rrd_A 18 EEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999874
No 16
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.09 E-value=1.3e-10 Score=106.09 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhc
Q psy7894 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 645 (1006)
Q Consensus 572 ~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~ 645 (1006)
.++++|+.|+.||+.+|+++|+|+++|+++..|.+||+..|++..+|..+.|+.+..+++||.+++.+|..+..
T Consensus 11 ~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 11 YDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998864
No 17
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=99.04 E-value=3.6e-10 Score=106.09 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhh
Q psy7894 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538 (1006)
Q Consensus 465 ~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~ 538 (1006)
.+.++|++|.+||.++|++.|+|+++||+|..|.+||+.+|+|.++|..+.|+.+..+++| ++|+++|..+..
T Consensus 13 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~ 85 (103)
T 2e1f_A 13 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFCQ 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999 999999998754
No 18
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=99.04 E-value=4e-10 Score=107.41 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcC
Q psy7894 465 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540 (1006)
Q Consensus 465 ~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p 540 (1006)
.+.++|++|.+||.++|++.|+|+++||+|..|.+||+.+|+|.++|..+.|+....+++| ++|+++|..+....
T Consensus 20 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~ 94 (113)
T 2dgz_A 20 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQTN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999999999999999999999999 99999999986543
No 19
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=98.98 E-value=8.6e-10 Score=97.84 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHh
Q psy7894 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 643 (1006)
Q Consensus 573 Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~A 643 (1006)
..++|+.|+.||+++|+++|+|+++|+++.+|.+||+..|++.++|..+.|+.+..+++||.+++++|...
T Consensus 4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~ 74 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999875
No 20
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=98.92 E-value=1.9e-09 Score=97.49 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhh
Q psy7894 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 644 (1006)
Q Consensus 572 ~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar 644 (1006)
....+|+.|..||..+|+++|+|+++|+++.+|.+||+..|++.++|..+.|+.+..+++||..|+++|..+.
T Consensus 5 ~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 77 (85)
T 2kv2_A 5 MVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999998873
No 21
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=101.11 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhh
Q psy7894 571 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 644 (1006)
Q Consensus 571 ~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar 644 (1006)
....++|+.|..||..+|+++|+|+++|+++.+|.+||+..|.++++|..+.|+.+..+++||.+|+++|..+.
T Consensus 19 e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~ 92 (101)
T 2rrd_A 19 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999998873
No 22
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=98.85 E-value=2.1e-09 Score=122.72 Aligned_cols=80 Identities=31% Similarity=0.547 Sum_probs=75.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhcCC
Q psy7894 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQP 647 (1006)
Q Consensus 568 ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~~~ 647 (1006)
.++++++++|++|+.||+++||++|+|+++|+++++|.+||+.+|++.++|.+++|+.+..+|+||.+++++|..++..+
T Consensus 307 ~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~~~~~ 386 (410)
T 2hbj_A 307 NIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNI 386 (410)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999996543
No 23
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=98.84 E-value=4.5e-09 Score=118.29 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhcCC
Q psy7894 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQP 647 (1006)
Q Consensus 568 ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~~~ 647 (1006)
.++++|+++++.|+.||+++||++|+|+++|+++++|.+||+.+|++.++|.++ |+.+..+++||.+++++|..++..|
T Consensus 208 ~l~~~~~~~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~~~g~~~l~~i~~~~~~~ 286 (375)
T 1yt3_A 208 QLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLP 286 (375)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHHHHHHHHHHHHHHHHhCC
Confidence 357889999999999999999999999999999999999999999999999999 9999999999999999999998876
Q ss_pred CCC
Q psy7894 648 LTK 650 (1006)
Q Consensus 648 ~~~ 650 (1006)
.+.
T Consensus 287 ~~~ 289 (375)
T 1yt3_A 287 EDA 289 (375)
T ss_dssp GGG
T ss_pred Hhh
Confidence 543
No 24
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=98.75 E-value=1.4e-08 Score=95.35 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhh
Q psy7894 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 644 (1006)
Q Consensus 572 ~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar 644 (1006)
...++|+.|..||.++|+++|+|+.+|+++..|.+||+..|+++++|..+.|+.+..+++| .+|+++|..+.
T Consensus 13 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~ 84 (103)
T 2e1f_A 13 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFC 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999 99999999874
No 25
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=98.72 E-value=1.6e-08 Score=96.43 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhc
Q psy7894 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 645 (1006)
Q Consensus 572 ~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~ 645 (1006)
...++|+.|..||.++|+++|+|+.+|+++..|.+||+..|.++++|..+.|+.+..+++| .+|+++|..+..
T Consensus 20 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~ 92 (113)
T 2dgz_A 20 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQ 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999 999999998754
No 26
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.53 E-value=3.9e-08 Score=113.26 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=73.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHH------------------Hh
Q psy7894 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV------------------KE 631 (1006)
Q Consensus 570 ~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~V------------------R~ 631 (1006)
+++|+++|+.|+.||+.+||++|+|+++|+++++|.+||+.+|++.++|.++.++....+ |+
T Consensus 230 ~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 309 (440)
T 3cym_A 230 DRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRK 309 (440)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhh
Confidence 678999999999999999999999999999999999999999999999999987655444 88
Q ss_pred -hHHHHHHHHHHhhcCCCCC
Q psy7894 632 -HVLDIHAIILKARLQPLTK 650 (1006)
Q Consensus 632 -~g~eLl~lI~~Ar~~~~~~ 650 (1006)
||..++++|..|+..|.+.
T Consensus 310 ~~~~~~l~~i~~~~~~~~~~ 329 (440)
T 3cym_A 310 IKPSMWKNIIQDALALPPSE 329 (440)
T ss_dssp SCHHHHHHHHHHHHTSCGGG
T ss_pred hhHHHHHHHHHHHHhCCHhh
Confidence 9999999999998876544
No 27
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.40 E-value=1.2e-06 Score=91.86 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=101.7
Q ss_pred EeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEe-----CCc-------eEEEeCc---c----------
Q psy7894 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST-----RDK-------DYIVDTL---K---------- 305 (1006)
Q Consensus 251 lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt-----~~~-------~yIID~l---a---------- 305 (1006)
-|++.+.+..+...+.....++||+|+.+..+....++-|.+.. .+. ..+|.+. .
T Consensus 20 ~~~~~~~~~~l~~~l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~G 99 (235)
T 3v9w_A 20 HMSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 (235)
T ss_dssp ---------CHHHHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHC
T ss_pred cccccccccCchhcccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhC
Confidence 36677778888888888899999999998876666655444332 111 1224441 0
Q ss_pred h------------hhhHHHHHHHHcC-------CCceeeecchhhHHHHHHHH---hCCcc-----CeeechHhHHHhCC
Q psy7894 306 L------------REDLEVLNEVLTD-------KNIVKVFHGADSDIKWLQKD---FGLYV-----VGMFDTHQACKFLP 358 (1006)
Q Consensus 306 L------------~~~L~~L~elLed-------p~IvKV~Hgak~Dl~~L~rd---~GI~~-----~nlFDTqlAAyLLg 358 (1006)
+ .+.+..|.+++.+ .....|+||+++|+.+|.+. +|+.. ..++||+.+++.+.
T Consensus 100 It~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~ 179 (235)
T 3v9w_A 100 IDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL 179 (235)
T ss_dssp CCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHH
T ss_pred CCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHh
Confidence 0 1134556666642 46778999999999998643 48742 25899999999876
Q ss_pred CCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 359 MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 359 ~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
+ .++|..|+++| |+..+. ....+|..||.++..||..|..+|.+.|
T Consensus 180 p-~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 180 G-QTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp S-CCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 47999999876 544321 1235699999999999999999998765
No 28
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.26 E-value=9.4e-07 Score=108.97 Aligned_cols=118 Identities=10% Similarity=0.021 Sum_probs=92.8
Q ss_pred cCCeEEEEeeeccCCccCCcEEEEEEEeC-CceEEEeCcchhhhHHHHHHHHcCCCceeeecchhhHHHHHHHHhCCccC
Q psy7894 267 QQQEIAIDLEYHNYRSYQGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345 (1006)
Q Consensus 267 ~a~~IAVDtE~~~~rty~g~lcLIQISt~-~~~yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~ 345 (1006)
..+.+++|+|+.+ ++.+.+| ++++.. +..++|+. . . ..|.++|+|+.+ |+++|+.+| ..+|+.+.
T Consensus 303 ~~~~va~d~et~~--~~~~~l~-vg~a~~~g~a~yvp~-~---~-~~Lk~lLed~~i-----n~K~d~~~L-~~~Gi~~~ 368 (832)
T 1bgx_T 303 EGAFVGFVLSRKE--PMWADLL-ALAAARGGRVHRAPE-P---Y-KALRDLKEARGL-----LAKDLSVLA-LREGLGLP 368 (832)
T ss_dssp TTCCBEEECSSSC--TTTCCCC-EEECBSSSEEECCSC-H---H-HHHHHCSSBCBT-----THHHHHHHH-HHHTCCCC
T ss_pred CCceEEEEEecCC--cccCcee-EEEEEcCCCEEEEEC-C---H-HHHHHHHhCCCC-----ChHHHHHHH-HHcCCccC
Confidence 3466999999877 4456775 557764 44555533 1 2 579999999987 999999999 46999988
Q ss_pred eeechHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 346 nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
.+|||++|+|+|++.+++|..|+.+| | | +|. + . || .||.++++||..|..+|.
T Consensus 369 ~~~Dt~laayLl~p~~~~l~~l~~~~-g----k-----~~~-----~-~--ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 369 PGDDPMLLAYLLDPSNTTPEGVARRY-G----G-----EWT-----E-E--AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp BCCCHHHHHHHHCTTCCSTTHHHHHH-S----C-----CCC-----S-S--HH-HHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHcCCCCCCHHHHHHHh-C----C-----Cch-----H-H--HH-HHHHHHHHHHHHHHHHHh
Confidence 77999999999998668999999999 3 2 231 1 1 88 799999999999999997
No 29
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.41 E-value=0.00062 Score=68.95 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=85.6
Q ss_pred hcCCeEEEEeeeccCCccCCcEEEEEEEe--CCc-----eEEEeCcc----------------------hhhhHHHHHHH
Q psy7894 266 KQQQEIAIDLEYHNYRSYQGYTCLMQIST--RDK-----DYIVDTLK----------------------LREDLEVLNEV 316 (1006)
Q Consensus 266 ~~a~~IAVDtE~~~~rty~g~lcLIQISt--~~~-----~yIID~la----------------------L~~~L~~L~el 316 (1006)
.....++||+|+.+..+..+.++-|.+.. .+. ..+|.|.. +.+.+..|..+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 44578999999998876555544333221 221 12344321 11234556677
Q ss_pred HcCCCceeeecchhhHHHHHHHH---hCCcc--CeeechHhHHHhC-CCCCccHHHHHHHHcCCCCCcccccccCCCCCC
Q psy7894 317 LTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFL-PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 390 (1006)
Q Consensus 317 Ledp~IvKV~Hgak~Dl~~L~rd---~GI~~--~nlFDTqlAAyLL-g~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPL 390 (1006)
+.+. .-|+||+.+|+.+|.+. +|+.. ..++||+..++.+ +..+++|..|++. +|+....
T Consensus 90 l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~~------------ 154 (186)
T 2p1j_A 90 LEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPFR------------ 154 (186)
T ss_dssp SSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCSTT------------
T ss_pred HCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCCC------------
Confidence 7653 46999999999998643 56654 3589999777665 4557899999986 5765421
Q ss_pred ChHHHHHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 391 PEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 391 s~eql~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
...|..||..+..|+..|..+..+.|
T Consensus 155 ----~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 155 ----HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred ----CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 14589999999999988876655443
No 30
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.19 E-value=0.0041 Score=64.61 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=90.3
Q ss_pred HHHHHhcCCeEEEEeeeccCCccCCcEEEEEE---Ee--CCc-------eEEEeCc---ch-------------------
Q psy7894 261 LVSELKQQQEIAIDLEYHNYRSYQGYTCLMQI---ST--RDK-------DYIVDTL---KL------------------- 306 (1006)
Q Consensus 261 lle~L~~a~~IAVDtE~~~~rty~g~lcLIQI---St--~~~-------~yIID~l---aL------------------- 306 (1006)
+...+.....++||+|+.+..+....++-|.+ .. .+. ..+|.+. .+
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~ 101 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMA 101 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCC
T ss_pred hhccccCCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcC
Confidence 34455666789999999988765555443322 21 122 1235441 01
Q ss_pred ---hhhHHHHHHHHcC-------CCceeeecchhhHHHHHHH---HhCCc--c---CeeechHhHHHhCCCCCccHHHHH
Q psy7894 307 ---REDLEVLNEVLTD-------KNIVKVFHGADSDIKWLQK---DFGLY--V---VGMFDTHQACKFLPMPRQSLAYLL 368 (1006)
Q Consensus 307 ---~~~L~~L~elLed-------p~IvKV~Hgak~Dl~~L~r---d~GI~--~---~nlFDTqlAAyLLg~~~~SLa~Lv 368 (1006)
...+..|.+++.+ ...+.|+||+.+|+.+|.+ .+|+. + ..++||+..++.+- +.++|..|+
T Consensus 102 ~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~~~~L~~l~ 180 (224)
T 2f96_A 102 VQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-GQTVLAKAC 180 (224)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-SCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-CCCCHHHHH
Confidence 0123344444431 2445699999999999864 35764 1 35899998776553 347899998
Q ss_pred HHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 369 e~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
++ +|+..... ..+-|..||.++..|+..|..++.+.|
T Consensus 181 ~~-~gi~~~~~--------------~~H~Al~Da~~ta~l~~~l~~~~~~~~ 217 (224)
T 2f96_A 181 QA-AGMEFDNR--------------EAHSARYDTEKTAELFCGIVNRWKEMG 217 (224)
T ss_dssp HH-TTCCCCTT--------------SCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH-cCCCcCCC--------------CCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 86 47764311 112388999999999999998887764
No 31
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.19 E-value=0.0018 Score=68.78 Aligned_cols=93 Identities=19% Similarity=0.093 Sum_probs=66.7
Q ss_pred hHHHHHHHHcC--CCceeeecch-hhHHHHHHHH---hCCcc----CeeechHhHHHhCC----------CCCccHHHHH
Q psy7894 309 DLEVLNEVLTD--KNIVKVFHGA-DSDIKWLQKD---FGLYV----VGMFDTHQACKFLP----------MPRQSLAYLL 368 (1006)
Q Consensus 309 ~L~~L~elLed--p~IvKV~Hga-k~Dl~~L~rd---~GI~~----~nlFDTqlAAyLLg----------~~~~SLa~Lv 368 (1006)
.+..|.+++.+ +...-|+||+ .+|+.+|.+. +|+.. ..++||+..++.+. ..+++|..|+
T Consensus 104 v~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~ 183 (242)
T 3mxm_B 104 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIY 183 (242)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHH
Confidence 34566677776 1245699997 9999998653 57653 25789998777432 3468999999
Q ss_pred HHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 369 e~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
++|+|+.....+ -|..||..+..|+..+..++.
T Consensus 184 ~~~~gi~~~~~H----------------~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 184 TRLYWQAPTDSH----------------TAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHHSSCCSSTT----------------SHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHhCCCCCCCc----------------ChHHHHHHHHHHHHHHHHHHH
Confidence 999998764322 288999999999888776554
No 32
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.17 E-value=0.0041 Score=63.17 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=84.5
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEe--CC-ce---EEEeCcc-h---------------------hhhHHHHHHHHcC
Q psy7894 268 QQEIAIDLEYHNYRSYQGYTCLMQIST--RD-KD---YIVDTLK-L---------------------REDLEVLNEVLTD 319 (1006)
Q Consensus 268 a~~IAVDtE~~~~rty~g~lcLIQISt--~~-~~---yIID~la-L---------------------~~~L~~L~elLed 319 (1006)
...++||+|+.+..+... ..+++|+. .+ .. .+|.|.. + .+.+..|..++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~-~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~ 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTE-EEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT
T ss_pred CeEEEEEeECcCcCCCCC-ceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC
Confidence 467999999998765432 22334443 22 22 2343311 0 1234567778864
Q ss_pred CCceeeecchhhHHHHHHHHhCCccCeeechHhHHH-----hCC-CCCccHHHHHHHHcCCCCCcccccccCCCCCCChH
Q psy7894 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK-----FLP-MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 393 (1006)
Q Consensus 320 p~IvKV~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAy-----LLg-~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~e 393 (1006)
.+-|+||+.+|+.+|.+. .....++||+.... .+. ...++|..|+++++|+....+...
T Consensus 84 --~~lV~hn~~fD~~~L~~~--~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~----------- 148 (189)
T 1wlj_A 84 --KLVVGHDLKHDFQALKED--MSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLG----------- 148 (189)
T ss_dssp --SEEEESSHHHHHHHTTCC--CTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTC-----------
T ss_pred --CEEEECCcHHHHHHHHHh--CCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCC-----------
Confidence 456999999999999432 22235899986432 221 246899999999999876432101
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 394 AIQYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 394 ql~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
.-|..||..+..||..+..++...+
T Consensus 149 --H~Al~Da~ata~l~~~l~~~~~~~~ 173 (189)
T 1wlj_A 149 --HSSVEDARATMELYQISQRIRARRG 173 (189)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --cCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 2388999999999999988887655
No 33
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=96.69 E-value=0.012 Score=65.12 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=65.5
Q ss_pred HHHHHHHHcC--CCceeeecc-hhhHHHHHHHH---hCCcc----CeeechHhHHH-hCC---------CCCccHHHHHH
Q psy7894 310 LEVLNEVLTD--KNIVKVFHG-ADSDIKWLQKD---FGLYV----VGMFDTHQACK-FLP---------MPRQSLAYLLK 369 (1006)
Q Consensus 310 L~~L~elLed--p~IvKV~Hg-ak~Dl~~L~rd---~GI~~----~nlFDTqlAAy-LLg---------~~~~SLa~Lve 369 (1006)
+..|.+++.+ ....-|+|| +.+|+.+|.+. +|+.. ..++||+...+ +.. ..+++|..|++
T Consensus 105 ~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~ 184 (314)
T 3u3y_B 105 AILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYT 184 (314)
T ss_dssp HHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHH
Confidence 3456667766 224569999 89999998653 56654 23789987655 221 24689999999
Q ss_pred HHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 370 ~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
+|+|+.....+ -|..||..+..|+..+..++.
T Consensus 185 ~l~gi~~~~aH----------------rAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 185 RLYWQAPTDSH----------------TAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHHSSCCSCSS----------------SHHHHHHHHHHHHHSSHHHHH
T ss_pred HhcCCCCCCCC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 98898764322 288999999999998776654
No 34
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=96.69 E-value=0.008 Score=62.76 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=65.7
Q ss_pred HHHHHHHHcCC--Cceeeecch-hhHHHHHHH---HhCCcc---CeeechHhHHHhCC---------C--CCccHHHHHH
Q psy7894 310 LEVLNEVLTDK--NIVKVFHGA-DSDIKWLQK---DFGLYV---VGMFDTHQACKFLP---------M--PRQSLAYLLK 369 (1006)
Q Consensus 310 L~~L~elLedp--~IvKV~Hga-k~Dl~~L~r---d~GI~~---~nlFDTqlAAyLLg---------~--~~~SLa~Lve 369 (1006)
...|..++.+- ..+-|+||+ .+|+.+|.+ .+|+.. ..++||+..++.+. + .+++|..|++
T Consensus 100 ~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~ 179 (238)
T 1y97_A 100 VRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFH 179 (238)
T ss_dssp HHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHH
Confidence 35677777752 145699999 999998864 357664 25899987766553 2 4689999999
Q ss_pred HHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 370 ~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
+++|+.... .+.|..||..+..|+..|..++.
T Consensus 180 ~~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 180 RYFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHH
Confidence 888875431 24588999999999999876665
No 35
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.54 E-value=0.033 Score=56.24 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCceeeecchhhHHHHHHHH---hCCc---c---CeeechHhHHHhCCCC-CccHHHHHHHHcCCCCCcc
Q psy7894 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLY---V---VGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKT 379 (1006)
Q Consensus 310 L~~L~elLedp~IvKV~Hgak~Dl~~L~rd---~GI~---~---~nlFDTqlAAyLLg~~-~~SLa~Lve~yLgv~LdK~ 379 (1006)
+..|..++.+. .-|+||+.+|+.+|.+. +|+. + ..++||+..++.+-+. .++|..|+++ +|+.....
T Consensus 86 ~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~~ 162 (194)
T 2gui_A 86 ADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSKR 162 (194)
T ss_dssp HHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTTC
T ss_pred HHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCCC
Confidence 45567777653 35899999999998643 4665 2 3689998766655443 5799999886 57654310
Q ss_pred cccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHH
Q psy7894 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415 (1006)
Q Consensus 380 ~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~e 415 (1006)
. .+-|..||.++..||..|..+
T Consensus 163 -~-------------~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 163 -T-------------LHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp -S-------------SCCHHHHHHHHHHHHHHHTC-
T ss_pred -C-------------CCChHHHHHHHHHHHHHHHhc
Confidence 0 122888999999999877643
No 36
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=94.84 E-value=0.24 Score=53.96 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCC-----ceeeecchhhHHH-HHHHH---hCCccC----eeechHhHH-HhCCCCC--ccHHHHHHHHcC
Q psy7894 310 LEVLNEVLTDKN-----IVKVFHGADSDIK-WLQKD---FGLYVV----GMFDTHQAC-KFLPMPR--QSLAYLLKHYCD 373 (1006)
Q Consensus 310 L~~L~elLedp~-----IvKV~Hgak~Dl~-~L~rd---~GI~~~----nlFDTqlAA-yLLg~~~--~SLa~Lve~yLg 373 (1006)
+..|..++.+.. ..-|+||+.+|+. +|.+. +|+... .++||+... .+++.++ ++|..|+++ +|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cC
Confidence 455666776641 3569999999998 88543 566532 588997543 3445444 899999976 57
Q ss_pred CCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHH
Q psy7894 374 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415 (1006)
Q Consensus 374 v~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~e 415 (1006)
+..... .+-|..||.++..|+..|..+
T Consensus 236 i~~~g~---------------~H~Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 236 MDYDGR---------------PNCGLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp CCCCSC---------------TTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC---------------CCChHHHHHHHHHHHHHHHHh
Confidence 654310 022888999999998887654
No 37
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=94.69 E-value=0.3 Score=56.94 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=80.2
Q ss_pred hcCCeEEEEeeeccCCccCCcEEEEEEE-eC-C-------ceEEEeCcc-h------------------------hhhHH
Q psy7894 266 KQQQEIAIDLEYHNYRSYQGYTCLMQIS-TR-D-------KDYIVDTLK-L------------------------REDLE 311 (1006)
Q Consensus 266 ~~a~~IAVDtE~~~~rty~g~lcLIQIS-t~-~-------~~yIID~la-L------------------------~~~L~ 311 (1006)
.....+.||+|+.+..+....++-|..- +. + -..+|.+.. + .+.+.
T Consensus 7 ~~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~ 86 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA 86 (482)
T ss_dssp CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHH
Confidence 4457899999999887655554333221 22 1 122343211 0 11234
Q ss_pred HHHHHHcCCCceeeecc-hhhHHHHHHHH---hCCcc--------CeeechHhHHHhC---------------CCCCccH
Q psy7894 312 VLNEVLTDKNIVKVFHG-ADSDIKWLQKD---FGLYV--------VGMFDTHQACKFL---------------PMPRQSL 364 (1006)
Q Consensus 312 ~L~elLedp~IvKV~Hg-ak~Dl~~L~rd---~GI~~--------~nlFDTqlAAyLL---------------g~~~~SL 364 (1006)
.|..++..+..+-|+|| +.+|+.+|.+. +|+.+ ...+||+-.++.+ |.++++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 46667764556679999 89999987543 34432 3467887655442 2236889
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHH
Q psy7894 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415 (1006)
Q Consensus 365 a~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~e 415 (1006)
..|++. +|+..... +-|..||.++..|+..|...
T Consensus 167 ~~L~~~-~Gi~~~~a----------------HrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 167 EHLTKA-NGIEHSNA----------------HDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCC----------------CCHHHHHHHHHHHHHHHHHh
Confidence 999875 47654321 22678999999998887644
No 38
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=93.74 E-value=0.36 Score=48.79 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCC-----ceeeecchhhHHH-HHHH---HhCCccC----eeechHhHHH-hCCC--CCccHHHHHHHHcC
Q psy7894 310 LEVLNEVLTDKN-----IVKVFHGADSDIK-WLQK---DFGLYVV----GMFDTHQACK-FLPM--PRQSLAYLLKHYCD 373 (1006)
Q Consensus 310 L~~L~elLedp~-----IvKV~Hgak~Dl~-~L~r---d~GI~~~----nlFDTqlAAy-LLg~--~~~SLa~Lve~yLg 373 (1006)
+..|..++.+.. ..-|+||+.+|+. +|.+ .+|+... .++||+..+. +++. ..++|..|+++ +|
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~g 167 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 167 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TT
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-cC
Confidence 345666776532 2459999999996 8754 3566532 6899986654 3443 24799999877 57
Q ss_pred CCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHH
Q psy7894 374 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415 (1006)
Q Consensus 374 v~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~e 415 (1006)
+..... .+-|..||..+..|+..|..+
T Consensus 168 i~~~~~---------------~H~Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 168 MDYDGR---------------PHCGLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp CCCCSC---------------TTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC---------------ccCcHHHHHHHHHHHHHHHHC
Confidence 654310 022788999999998877643
No 39
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=93.60 E-value=0.17 Score=45.40 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhh--HHHHHHHH
Q psy7894 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH--VLDIHAII 533 (1006)
Q Consensus 469 vlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~--~~eil~iI 533 (1006)
.+..|-+-|-.++.+.+.|...+|||-.|..||..+|++.+++..+.|..+..++++ ...++--+
T Consensus 8 ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~fk~FK~~l~~L 74 (81)
T 1d8b_A 8 TYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFKYFKATIADL 74 (81)
T ss_dssp HHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 577888899999999999999999999999999999999999999999998887754 34444333
No 40
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=92.25 E-value=0.59 Score=52.27 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCC-----ceeeecchhhHHH-HHHHH---hCCcc----CeeechHhHHH-hCCCCC--ccHHHHHHHHcC
Q psy7894 310 LEVLNEVLTDKN-----IVKVFHGADSDIK-WLQKD---FGLYV----VGMFDTHQACK-FLPMPR--QSLAYLLKHYCD 373 (1006)
Q Consensus 310 L~~L~elLedp~-----IvKV~Hgak~Dl~-~L~rd---~GI~~----~nlFDTqlAAy-LLg~~~--~SLa~Lve~yLg 373 (1006)
+..|..++.+.. ..-|+||+.+|+. +|.+. +|+.. ..++||+.... +++.++ ++|..|+++ +|
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TT
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cC
Confidence 455666776641 3569999999998 88543 56643 25789976543 345444 899999876 57
Q ss_pred CCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHH
Q psy7894 374 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415 (1006)
Q Consensus 374 v~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~e 415 (1006)
+..... .+-|..||.++..|+..|..+
T Consensus 286 i~~~g~---------------~HrAl~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 286 MDYDGR---------------PHCGLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp CCCCSC---------------TTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC---------------CCCHHHHHHHHHHHHHHHHHh
Confidence 654310 022888999999998887654
No 41
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=92.21 E-value=1.2 Score=46.03 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCCceeeecch--------hhHHHH-HH---HHhCCccC----eeech---HhHHHhCCCCCccHHHHHHH
Q psy7894 310 LEVLNEVLTDKNIVKVFHGA--------DSDIKW-LQ---KDFGLYVV----GMFDT---HQACKFLPMPRQSLAYLLKH 370 (1006)
Q Consensus 310 L~~L~elLedp~IvKV~Hga--------k~Dl~~-L~---rd~GI~~~----nlFDT---qlAAyLLg~~~~SLa~Lve~ 370 (1006)
+..|..++.+.- -|+||+ .+|+.. |. +.+|+... ..+|+ .-.++-+. +.++|..|++
T Consensus 108 ~~~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~-p~~~L~~l~~- 183 (224)
T 2xri_A 108 LERVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW-PKNGLLDMNK- 183 (224)
T ss_dssp HHHHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSC-CTTTHHHHHH-
T ss_pred HHHHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccC-CCCCHHHHHH-
Confidence 455667777643 389999 999984 63 24576542 57884 43444333 3589999987
Q ss_pred HcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHH
Q psy7894 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413 (1006)
Q Consensus 371 yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~ 413 (1006)
++|+.... . ..-|..||..+..|+..|.
T Consensus 184 ~~gi~~~~--~-------------~H~Al~DA~~ta~l~~~l~ 211 (224)
T 2xri_A 184 GLSLQHIG--R-------------PHSGIDDCKNIANIMKTLA 211 (224)
T ss_dssp HTTCCCCS--C-------------TTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCC--C-------------CcChHHHHHHHHHHHHHHH
Confidence 45765421 0 1238889999999887775
No 42
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=90.87 E-value=0.72 Score=41.46 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhh--HHHHHHHHHH
Q psy7894 574 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH--VLDIHAIILK 642 (1006)
Q Consensus 574 lavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~--g~eLl~lI~~ 642 (1006)
..+++.|..-|-.++.+...+.+.++++..|.++|..+|.+-++-..+.|..+..++++ -..++.-+..
T Consensus 6 ~~ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~fk~FK~~l~~L~k 76 (81)
T 1d8b_A 6 RMTYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFKYFKATIADLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999976 3555554443
No 43
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=88.24 E-value=6.5 Score=48.37 Aligned_cols=144 Identities=14% Similarity=0.199 Sum_probs=85.9
Q ss_pred cCCeEEEEeeeccCC---ccCCcEEEEEEEe--CCceEEEe--Cc--------ch-hhhHHHHHHHHc--CCCceeeecc
Q psy7894 267 QQQEIAIDLEYHNYR---SYQGYTCLMQIST--RDKDYIVD--TL--------KL-REDLEVLNEVLT--DKNIVKVFHG 328 (1006)
Q Consensus 267 ~a~~IAVDtE~~~~r---ty~g~lcLIQISt--~~~~yIID--~l--------aL-~~~L~~L~elLe--dp~IvKV~Hg 328 (1006)
.-..+++|+|.++.. +-... +++|+. .+...++- .+ .- .+.+..|..++. ||+++ |+||
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~--Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDii-vGyN 210 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGP--ILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVL-ITYN 210 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSC--EEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSEE-EESS
T ss_pred CcEEEEEEEEEcCCCCCCCCCCc--EEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCEE-EEeC
Confidence 457899999998621 11222 455553 33322221 11 00 123455555553 68765 8998
Q ss_pred h-hhHHHHHHHH---hCCcc------------------------CeeechHhHHH-hCCCCCccHHHHHHHHcCCCCCc-
Q psy7894 329 A-DSDIKWLQKD---FGLYV------------------------VGMFDTHQACK-FLPMPRQSLAYLLKHYCDVDSDK- 378 (1006)
Q Consensus 329 a-k~Dl~~L~rd---~GI~~------------------------~nlFDTqlAAy-LLg~~~~SLa~Lve~yLgv~LdK- 378 (1006)
. .+|+..|..+ +|+.. ..++|++..+. .+..++++|..+++++||.....
T Consensus 211 ~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv 290 (775)
T 1qht_A 211 GDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290 (775)
T ss_dssp TTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCCCCCCC
T ss_pred CCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCCCCCcc
Confidence 7 6798877543 45432 23679886654 34556799999999999974321
Q ss_pred -cccc-ccCCCCCCChHHHHHHHhchhHHHHHHHHHH
Q psy7894 379 -TFQL-FDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413 (1006)
Q Consensus 379 -~~q~-sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~ 413 (1006)
.... .-|...+--...+.|...||..++.|+..+.
T Consensus 291 ~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp CHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0111 1254433116789999999999999987654
No 44
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=87.62 E-value=1.8 Score=47.29 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCceeeecch------hhHH-HHHHH---HhCCccC----eeechHhHHH-hCCC-------CCccHHHH
Q psy7894 310 LEVLNEVLTDKNIVKVFHGA------DSDI-KWLQK---DFGLYVV----GMFDTHQACK-FLPM-------PRQSLAYL 367 (1006)
Q Consensus 310 L~~L~elLedp~IvKV~Hga------k~Dl-~~L~r---d~GI~~~----nlFDTqlAAy-LLg~-------~~~SLa~L 367 (1006)
+..|..++.+..+ |+||+ .+|+ .+|.+ .+|+... ..+||+-.++ +++. +.++|..|
T Consensus 99 l~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 99 YEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 3456667765433 67777 9999 57643 4576543 4789985544 3321 15789999
Q ss_pred HHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHH
Q psy7894 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414 (1006)
Q Consensus 368 ve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~ 414 (1006)
++ ++|+..... .+-|..||.++..|+..|..
T Consensus 177 ~~-~~gi~~~~~---------------~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 177 NE-YYDLPTIGR---------------AHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp HH-HTTCCCCSC---------------TTCHHHHHHHHHHHHHHHHH
T ss_pred HH-HcCCCCCCC---------------CcCHHHHHHHHHHHHHHHHH
Confidence 95 457654321 02278899999999887753
No 45
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=86.80 E-value=5.7 Score=39.25 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHcCC----CceeeecchhhHHHHHHHHh---CCcc-Ceeec--hHh-HHHhCCCCCccHHHHHHHHcCCCCCc
Q psy7894 310 LEVLNEVLTDK----NIVKVFHGADSDIKWLQKDF---GLYV-VGMFD--THQ-ACKFLPMPRQSLAYLLKHYCDVDSDK 378 (1006)
Q Consensus 310 L~~L~elLedp----~IvKV~Hgak~Dl~~L~rd~---GI~~-~nlFD--Tql-AAyLLg~~~~SLa~Lve~yLgv~LdK 378 (1006)
+..|.+++.+- ..+-|+||+.+|+.+|.+.+ |..+ ...+| |+. .++.+.+. +. .|+..
T Consensus 85 ~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~---~~------~~i~~-- 153 (180)
T 2igi_A 85 ELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE---IL------DGFTK-- 153 (180)
T ss_dssp HHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG---GG------GGSCC--
T ss_pred HHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH---hh------hCCCC--
Confidence 34566677641 24569999999999996543 2111 23566 542 23322221 00 02111
Q ss_pred ccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHH
Q psy7894 379 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416 (1006)
Q Consensus 379 ~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL 416 (1006)
...+-|..||..+..|+..++..+
T Consensus 154 --------------~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 154 --------------QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp --------------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred --------------cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 012338899999999998887654
No 46
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=82.44 E-value=10 Score=38.23 Aligned_cols=86 Identities=9% Similarity=0.077 Sum_probs=48.4
Q ss_pred HHHHHHHcCCC----ceeeecchhhHHHHHHHHh---CCcc-CeeechHhHHHhCCCCCccHHHHHHHHcCCCCCccccc
Q psy7894 311 EVLNEVLTDKN----IVKVFHGADSDIKWLQKDF---GLYV-VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 382 (1006)
Q Consensus 311 ~~L~elLedp~----IvKV~Hgak~Dl~~L~rd~---GI~~-~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~ 382 (1006)
..|..++.+.- ..-|+||+.+|+.+|.+.+ |... ...+|+. +|..|+.+++.. +-+.
T Consensus 90 ~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-----------~l~~l~~~~~p~-~~~~--- 154 (194)
T 2gbz_A 90 AQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-----------TIKELARRWAPA-VASG--- 154 (194)
T ss_dssp HHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-----------HHHHHHHHHCGG-GGTT---
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-----------HHHHHHHHhCHH-HHhC---
Confidence 44556666532 2369999999999996543 1111 1233432 455556655421 0000
Q ss_pred ccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHHH
Q psy7894 383 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418 (1006)
Q Consensus 383 sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e 418 (1006)
++....+-|..||..+..|+..++..+..
T Consensus 155 -------i~~~~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 155 -------FAKSSAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp -------CCCCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred -------CCCCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 11111234889999999999988866653
No 47
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=77.85 E-value=11 Score=42.32 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=64.2
Q ss_pred HHHHHHHH--cCCCceeeecch-hhHHHHHHHH----hCC---------------------------ccC--eeechHhH
Q psy7894 310 LEVLNEVL--TDKNIVKVFHGA-DSDIKWLQKD----FGL---------------------------YVV--GMFDTHQA 353 (1006)
Q Consensus 310 L~~L~elL--edp~IvKV~Hga-k~Dl~~L~rd----~GI---------------------------~~~--nlFDTqlA 353 (1006)
+..+..++ .||.|+ +|||. .+|+..|..+ +|+ .+. -++|++.+
T Consensus 195 L~~f~~~i~~~dPDii-~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~~~ 273 (388)
T 1noy_A 195 LMEYINLWEQKRPAIF-TGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDL 273 (388)
T ss_dssp HHHHHHHHHHSCCSEE-ECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHHH
T ss_pred HHHHHHHHHHhCCcEE-EecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHHHH
Confidence 45555566 578875 78998 6688665321 331 011 17899988
Q ss_pred HHh--CC-CCCccHHHHHHHHcCCCC-Cccccccc-CCCCCCChHHHHHHHhchhHHHHHHHHH
Q psy7894 354 CKF--LP-MPRQSLAYLLKHYCDVDS-DKTFQLFD-WRHRPLPEPAIQYARTDTHYLLYVYDCM 412 (1006)
Q Consensus 354 AyL--Lg-~~~~SLa~Lve~yLgv~L-dK~~q~sD-W~~RPLs~eql~YAA~DA~yLL~Lyd~L 412 (1006)
.+- +. .++++|..+++++||..- +-...... |. .-....+.|...||..++.|+..+
T Consensus 274 ~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 274 YKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp HHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 34 457999999999998642 11111121 22 111467899999999999999874
No 48
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=70.39 E-value=23 Score=35.98 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=28.8
Q ss_pred HHHHHHHcC----CCceeeecchhhHHHHHHHHh---CCccC-eeec--hHh-HHHhCCC
Q psy7894 311 EVLNEVLTD----KNIVKVFHGADSDIKWLQKDF---GLYVV-GMFD--THQ-ACKFLPM 359 (1006)
Q Consensus 311 ~~L~elLed----p~IvKV~Hgak~Dl~~L~rd~---GI~~~-nlFD--Tql-AAyLLg~ 359 (1006)
..|.+++.. ...+-|+||+.+|+..|.+.+ |..+. .++| |.. .++.+-+
T Consensus 90 ~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P 149 (186)
T 3tr8_A 90 TLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAP 149 (186)
T ss_dssp HHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCc
Confidence 445556621 233459999999999986542 33332 4678 654 4554433
No 49
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=69.13 E-value=40 Score=40.02 Aligned_cols=131 Identities=10% Similarity=0.040 Sum_probs=73.5
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEeCC--ceEEEeCcchhhhHHHHHHHHcCCCceeeecchhhHHHHHHHH---hC-
Q psy7894 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRD--KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKD---FG- 341 (1006)
Q Consensus 268 a~~IAVDtE~~~~rty~g~lcLIQISt~~--~~yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl~~L~rd---~G- 341 (1006)
...+++|+|... +...+.+..+.+.+.+ ..|..+- .+..+.+++.+-++.-++||.++|...|.+. .|
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~~~~~-----~l~~fi~~~~~~~~~i~~hNl~FD~~~l~~~~~~~~~ 79 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEYKIGN-----SLDEFMAWVLKVQADLYFHNLKFAGAFIINWLERNGF 79 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCEEEES-----CHHHHHHHHHHHCCEEEETTHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEeCCceEEEEech-----hHHHHHHHHHHcCCEEEEEChhhhHHHHHHHHHHhCc
Confidence 357899999842 2344456566666553 2343331 2333444444434445889999999887643 22
Q ss_pred ------C--c----cC---ee----------------echHhHHHhCCCCCccHHHHHHHHcCCCCCccc---c---ccc
Q psy7894 342 ------L--Y----VV---GM----------------FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTF---Q---LFD 384 (1006)
Q Consensus 342 ------I--~----~~---nl----------------FDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~---q---~sD 384 (1006)
+ . +. .+ +|..-...++ ..||+.+++.+.. ...|+. . ..+
T Consensus 80 ~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~~---~~SL~~~a~~f~~-~~~K~~~py~~~~~~~ 155 (575)
T 2py5_A 80 KWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKL---PFPVKKIAKDFKL-TVLKGDIDYHKERPVG 155 (575)
T ss_dssp EECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHS---CSCHHHHHHHTTC-CCCSSCCCTTSCCCTT
T ss_pred ccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhhh---hhhHHHHHHHhCC-cccCCccCccccCccc
Confidence 1 0 10 00 1111111222 3689998887653 222321 1 122
Q ss_pred CCCCCCChHHHHHHHhchhHHHHHHHH
Q psy7894 385 WRHRPLPEPAIQYARTDTHYLLYVYDC 411 (1006)
Q Consensus 385 W~~RPLs~eql~YAA~DA~yLL~Lyd~ 411 (1006)
| -+.++.+.|+..||..|..++..
T Consensus 156 ~---~~~~~~~~Y~~~Dv~ll~~i~~~ 179 (575)
T 2py5_A 156 Y---KITPEEYAYIKNDIQIIAEALLI 179 (575)
T ss_dssp C---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 36788999999999999987764
No 50
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=58.46 E-value=7.2 Score=49.36 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=66.9
Q ss_pred ceeeecchhhHHHHHHHHhCCccC--eeechHhHHHhC-------------------------------------CC---
Q psy7894 322 IVKVFHGADSDIKWLQKDFGLYVV--GMFDTHQACKFL-------------------------------------PM--- 359 (1006)
Q Consensus 322 IvKV~Hgak~Dl~~L~rd~GI~~~--nlFDTqlAAyLL-------------------------------------g~--- 359 (1006)
-+.||||..+|-..+...|.+... ..+|||-.+-.. ++
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 345999999998776566766554 367998332110 01
Q ss_pred -------C-Cc--cHHHHHHHHcCC-CCCcccccccCCCCCCC------hHHHHHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 360 -------P-RQ--SLAYLLKHYCDV-DSDKTFQLFDWRHRPLP------EPAIQYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 360 -------~-~~--SLa~Lve~yLgv-~LdK~~q~sDW~~RPLs------~eql~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
. -. ||+++...|||. .++|.. +..+..-.+. .+.+.|+|.||..+.++|..+.....++.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~-Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~erc 351 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEP-RELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERC 351 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCS-SSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhh-HhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 1 14 899999999997 887754 3334333433 46789999999999999999999877664
No 51
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=50.72 E-value=1.3e+02 Score=37.44 Aligned_cols=99 Identities=14% Similarity=0.036 Sum_probs=63.5
Q ss_pred hHHHHHHHHcCCCceeeecch-hhHHHHHHHH---hCCc-------c----------CeeechHhHH-------HhCC--
Q psy7894 309 DLEVLNEVLTDKNIVKVFHGA-DSDIKWLQKD---FGLY-------V----------VGMFDTHQAC-------KFLP-- 358 (1006)
Q Consensus 309 ~L~~L~elLedp~IvKV~Hga-k~Dl~~L~rd---~GI~-------~----------~nlFDTqlAA-------yLLg-- 358 (1006)
.+..|..++.+.. +-|+||. .+|+..|..+ +|+. + ...+|++... |..+
T Consensus 260 LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~k 338 (847)
T 1s5j_A 260 LLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGK 338 (847)
T ss_dssp HHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTC
T ss_pred HHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccc
Confidence 4677788888887 4589997 6799887543 4552 1 1246776432 2222
Q ss_pred CCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHH
Q psy7894 359 MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 411 (1006)
Q Consensus 359 ~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~ 411 (1006)
..+++|..+++.+||..-. .-...|. +.-....+.|...||..+++|+..
T Consensus 339 l~sysL~~Va~~~Lg~~K~--dv~~~i~-~~~~~~l~~Ycl~Da~lt~~L~~~ 388 (847)
T 1s5j_A 339 YNEYNLDAVAKALLGTSKV--KVDTLIS-FLDVEKLIEYNFRDAEITLQLTTF 388 (847)
T ss_dssp CSSCSHHHHHHHHHCCCCC----SSCTT-TCCHHHHHHHHHHHHHHHHHTTTH
T ss_pred cccccHHHHHHHHhCCCCc--chhHhhh-hccHHHHHHHHHHHHHHHHHHHHH
Confidence 2468999999999996421 1112232 111256889999999999999643
No 52
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=49.91 E-value=91 Score=38.51 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=62.9
Q ss_pred HHHHHHHHc--CCCceeeecchh-hHHHHHHHH---hCCcc---------------------------CeeechHhHHHh
Q psy7894 310 LEVLNEVLT--DKNIVKVFHGAD-SDIKWLQKD---FGLYV---------------------------VGMFDTHQACKF 356 (1006)
Q Consensus 310 L~~L~elLe--dp~IvKV~Hgak-~Dl~~L~rd---~GI~~---------------------------~nlFDTqlAAyL 356 (1006)
+..+..++. ||+|+ ++||.. +|+..|.++ +|+.. .-++|++.+.+-
T Consensus 208 L~~f~~~i~~~dPDii-~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~ 286 (786)
T 3k59_A 208 LEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKS 286 (786)
T ss_dssp HHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCCEE-EecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHh
Confidence 344444443 68765 899974 698877532 33321 126788766653
Q ss_pred --CCCCCccHHHHHHHHcCCCCCc--c----ccccc-CCCCCCChHHHHHHHhchhHHHHHHHHH
Q psy7894 357 --LPMPRQSLAYLLKHYCDVDSDK--T----FQLFD-WRHRPLPEPAIQYARTDTHYLLYVYDCM 412 (1006)
Q Consensus 357 --Lg~~~~SLa~Lve~yLgv~LdK--~----~q~sD-W~~RPLs~eql~YAA~DA~yLL~Lyd~L 412 (1006)
+...+++|..+++++||..-.- . ....+ |...+ ...+.|...||...++|+..+
T Consensus 287 ~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~--~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 287 AFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDK--PALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp TTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 5567899999999999964210 0 11111 22111 467899999999999998775
No 53
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=37.18 E-value=65 Score=35.04 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=55.6
Q ss_pred CCCceeeecchhhHHHHHHHHh-C--C-------------ccCeeechHhHHHhCCCCCccHHHHHHHHcCCC-CCcccc
Q psy7894 319 DKNIVKVFHGADSDIKWLQKDF-G--L-------------YVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD-SDKTFQ 381 (1006)
Q Consensus 319 dp~IvKV~Hgak~Dl~~L~rd~-G--I-------------~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~-LdK~~q 381 (1006)
++++.+|.|...+|+--|.+.+ | + ....++||...+..++.-+-||.+|++. ||+. +.+.
T Consensus 148 ~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~-L~v~r~g~~-- 224 (285)
T 4gmj_B 148 CEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQ-LELERIGPQ-- 224 (285)
T ss_dssp CTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHH-TTCCCCSCT--
T ss_pred cCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHh-CCCCCCCCC--
Confidence 5667777666667775443322 1 1 1246899998888776545689999877 5543 1111
Q ss_pred cccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHHH
Q psy7894 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418 (1006)
Q Consensus 382 ~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e 418 (1006)
+=|..|+..+..+|-.|++.+-+
T Consensus 225 --------------HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 225 --------------HQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp --------------TSHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------CcchhHHHHHHHHHHHHHHHHhc
Confidence 22889999999999999887764
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=34.79 E-value=3e+02 Score=25.96 Aligned_cols=138 Identities=11% Similarity=0.089 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcC
Q psy7894 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540 (1006)
Q Consensus 461 ~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p 540 (1006)
+|+++-..++. -=..+|++. .-.||-+.|.|+.|....-.....++.-+|.....++..+.. .....
T Consensus 6 ~~t~~~~~~l~----~A~~~A~~~--~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~-------~l~~~ 72 (146)
T 3fh2_A 6 RFTDRARRVIV----LAQEEARML--NHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEE-------IIGQG 72 (146)
T ss_dssp GBCHHHHHHHH----HHHHHHHHT--TCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHH-------HHCCC
T ss_pred hcCHHHHHHHH----HHHHHHHHc--CCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHH-------HhccC
Confidence 35555444433 123345444 456999999999999875455667777777765555543333 22211
Q ss_pred CCCCccccCCccchhhhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhh
Q psy7894 541 LTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620 (1006)
Q Consensus 541 ~~~~i~~~~ps~~gir~~q~q~~~pP~ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~ 620 (1006)
+. . . ...+ .+++. ++.+...-...|++.+ -.||-..|.|+.|.+........++.
T Consensus 73 ~~-----~-~-----------~~~~--~~s~~----~~~vL~~A~~~a~~~~--~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 73 SQ-----P-T-----------TGHI--PFTPR----AKKVLELSLREGLQMG--HKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp SC-----C-C-----------CSCC--CBCHH----HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred CC-----C-C-----------cCCC--cCCHH----HHHHHHHHHHHHHHcC--CCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 10 0 0 0011 13442 3333333444555543 36999999999999876556777887
Q ss_pred cCCCChHHHHhhHHHH
Q psy7894 621 CCNPVPQTVKEHVLDI 636 (1006)
Q Consensus 621 ~~~~~p~~VR~~g~eL 636 (1006)
-+|.....++.....+
T Consensus 128 ~~gv~~~~l~~~l~~~ 143 (146)
T 3fh2_A 128 KLGADLPRVRQQVIQL 143 (146)
T ss_dssp HHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHH
Confidence 7799888888765544
No 55
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=33.96 E-value=61 Score=37.88 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=62.7
Q ss_pred HHHHHHcCCCceeeecchhhHHHHHHHHhCCc-c--------------CeeechHhHHHhCC----CCCccHHHHHHHHc
Q psy7894 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY-V--------------VGMFDTHQACKFLP----MPRQSLAYLLKHYC 372 (1006)
Q Consensus 312 ~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~-~--------------~nlFDTqlAAyLLg----~~~~SLa~Lve~yL 372 (1006)
.+.+.|.+.+...|+||+-.|+..|++.|--. | ..++||-+.+.... .+..+|..|.+.+-
T Consensus 267 ~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~ 346 (507)
T 3d45_A 267 RVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLK 346 (507)
T ss_dssp HHHHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTT
T ss_pred HHHHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHh
Confidence 34455555677789999999998877654211 1 35899998776432 12468999887753
Q ss_pred CCC--CCc---ccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 373 DVD--SDK---TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 373 gv~--LdK---~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
... ... ..+...+. ......+=|+.|+..+-.++-.|...|.
T Consensus 347 ~~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 347 ETPFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp STTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 211 111 00101111 1112234589999999999999988774
No 56
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=33.56 E-value=69 Score=36.65 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=60.5
Q ss_pred HHHHHHcCCCceeeecchhhHHHHHHHHh-CCcc--------------CeeechHhHHHhCCC----CCccHHHHHHHHc
Q psy7894 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDF-GLYV--------------VGMFDTHQACKFLPM----PRQSLAYLLKHYC 372 (1006)
Q Consensus 312 ~L~elLedp~IvKV~Hgak~Dl~~L~rd~-GI~~--------------~nlFDTqlAAyLLg~----~~~SLa~Lve~yL 372 (1006)
.+.+.+.+.+..-||||+-.|+..+++.| |-.| ..++||-+.+..... +..+|..|...+.
T Consensus 272 ~V~~~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~ 351 (430)
T 2a1r_A 272 RVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLK 351 (430)
T ss_dssp HHHHHHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTT
T ss_pred HHHHHHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHH
Confidence 33444444455569999999998776554 2211 358999988755432 2468998877653
Q ss_pred CCCC-------CcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 373 DVDS-------DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 373 gv~L-------dK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
.... +.+...-+. ..++.+=|+-|++.+-.++-.|...|.
T Consensus 352 ~~~~~~p~i~~~~~~~~y~~-----~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 352 ETPFNPPKVESAEGFPSYDT-----ASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp STTCCCCCEEECTTCCCC----------CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred hCCCCCCeeecCCCcccccc-----CCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 2211 111111110 123344588899999999999988774
No 57
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=29.06 E-value=1e+02 Score=32.98 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=40.6
Q ss_pred CeeechHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 345 ~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
..++||...+..+..-.-||.+|++.+ |+.-. .+ ..-|+.|+..+..+|-+|+...-
T Consensus 180 P~iyD~K~l~~~~~~l~~gL~~la~~L-~v~r~----------g~-----~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 180 PVIYDVKYLMKSCKNLKGGLQEVAEQL-ELERI----------GP-----QHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp SCEEEHHHHGGGCTTCCSSHHHHHHHH-TCCCC----------SS-----TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhHHHHHHHhcccCCCHHHHHHHc-CCCcc----------Cc-----ccchhhhHHHHHHHHHHHHHHhc
Confidence 478999998888754346899998874 54311 01 12388999999999999986654
No 58
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=27.06 E-value=87 Score=39.33 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=64.7
Q ss_pred HHHHHHHHc--CCCceeeecch-hhHHHHHHHH----hCCc---------------------------cC--eeechHhH
Q psy7894 310 LEVLNEVLT--DKNIVKVFHGA-DSDIKWLQKD----FGLY---------------------------VV--GMFDTHQA 353 (1006)
Q Consensus 310 L~~L~elLe--dp~IvKV~Hga-k~Dl~~L~rd----~GI~---------------------------~~--nlFDTqlA 353 (1006)
+..|..++. ||.|+ ++||. .+|+..|.++ +|+. +. .++|++.+
T Consensus 198 L~~F~~~I~~~DPDII-tGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lDl~~~ 276 (903)
T 3qex_A 198 LMEYLNFWQQKTPVIL-TGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDL 276 (903)
T ss_dssp HHHHHHHHHHTCCSEE-ECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCHHHH
T ss_pred HHHHHHHHHHhCCCEE-EecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEeeHHHH
Confidence 455566665 78886 67887 5688666422 3431 11 26788877
Q ss_pred HHh---CCCCCccHHHHHHHHcCCCCCc-ccccccCCCCCCChHHHHHHHhchhHHHHHHHHH
Q psy7894 354 CKF---LPMPRQSLAYLLKHYCDVDSDK-TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412 (1006)
Q Consensus 354 AyL---Lg~~~~SLa~Lve~yLgv~LdK-~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L 412 (1006)
.+- ++.++++|..++.++||..-.. .....+|.... ....+.|...||..+++|+..+
T Consensus 277 ~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d-~~~L~~Ycl~Da~Lt~~L~~Kl 338 (903)
T 3qex_A 277 YKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESN-HQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp HHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 764 3456799999999999964221 12222331111 1457899999999999998873
No 59
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=26.86 E-value=3.9e+02 Score=24.89 Aligned_cols=119 Identities=12% Similarity=0.130 Sum_probs=70.7
Q ss_pred HHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcCCCCCccccCCccchhhhhh
Q psy7894 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQ 559 (1006)
Q Consensus 480 ~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p~~~~i~~~~ps~~gir~~q 559 (1006)
+|++. .-.+|-+.|.|+.|....-.....++.-+|.....++......+ ... |...+
T Consensus 20 ~A~~~--~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l-------~~~---------~~~~~----- 76 (150)
T 2y1q_A 20 EALRL--GHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI-------GRA---------QEMSQ----- 76 (150)
T ss_dssp HHHHT--TCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHH-------CCC-------------------
T ss_pred HHHHc--CCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHh-------ccC---------Ccccc-----
Confidence 44444 45699999999999987555567778777876665554433322 110 10000
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCCh-hhhhhcCCCChHHHHhhHH
Q psy7894 560 QQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI-QGIFACCNPVPQTVKEHVL 634 (1006)
Q Consensus 560 ~q~~~pP~ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l-~~L~~~~~~~p~~VR~~g~ 634 (1006)
.+ .+++. ++.+..--...|+.. ...||-..|.|+.|.+.. ... ..++.-+|.....++....
T Consensus 77 ----~~--~~s~~----~~~vL~~A~~~A~~~--~~~~i~~ehlLlall~~~-~~~a~~~L~~~gi~~~~l~~~i~ 139 (150)
T 2y1q_A 77 ----TI--HYTPR----AKKVIELSMDEARKL--GHSYVGTEHILLGLIREG-EGVAARVLNNLGVSLNKARQQVL 139 (150)
T ss_dssp ----CC--EECHH----HHHHHHHHHHHHHHT--TCSSBCHHHHHHHHHHHC-CSHHHHHHHHTTCCHHHHHHHHH
T ss_pred ----cC--CCCHH----HHHHHHHHHHHHHHc--CCCeecHHHHHHHHHhCC-CcHHHHHHHHcCCCHHHHHHHHH
Confidence 01 12332 333333334445553 456999999999999863 333 4666667888887776543
No 60
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=25.98 E-value=1.2e+02 Score=38.20 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=64.4
Q ss_pred HHHHHHHH--cCCCceeeecch-hhHHHHHHHH---hCCcc------------------------------------Cee
Q psy7894 310 LEVLNEVL--TDKNIVKVFHGA-DSDIKWLQKD---FGLYV------------------------------------VGM 347 (1006)
Q Consensus 310 L~~L~elL--edp~IvKV~Hga-k~Dl~~L~rd---~GI~~------------------------------------~nl 347 (1006)
+..|..++ .||.|+ ++||. .+|+..|.++ +|+.. ..+
T Consensus 317 L~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 317 LSNWRNFIIKVDPDVI-IGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHhCCCEE-EecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 45555555 378874 79998 5798777432 34321 126
Q ss_pred echHhHHH-hCCCCCccHHHHHHHHcCCCCCc--cccccc-CCCCCC-ChHHHHHHHhchhHHHHHHHHH
Q psy7894 348 FDTHQACK-FLPMPRQSLAYLLKHYCDVDSDK--TFQLFD-WRHRPL-PEPAIQYARTDTHYLLYVYDCM 412 (1006)
Q Consensus 348 FDTqlAAy-LLg~~~~SLa~Lve~yLgv~LdK--~~q~sD-W~~RPL-s~eql~YAA~DA~yLL~Lyd~L 412 (1006)
+|++.... .+...+++|..++.++||..... .....+ |...+- ....+.|...||...++|+..+
T Consensus 396 lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887654 45667899999999999954210 112222 221110 1356899999999999998876
No 61
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=22.96 E-value=79 Score=40.90 Aligned_cols=103 Identities=9% Similarity=0.028 Sum_probs=62.3
Q ss_pred HHHHHHHH--cCCCceeeecch-hhHHHHHHHH----hCCccC--------------------------------eeech
Q psy7894 310 LEVLNEVL--TDKNIVKVFHGA-DSDIKWLQKD----FGLYVV--------------------------------GMFDT 350 (1006)
Q Consensus 310 L~~L~elL--edp~IvKV~Hga-k~Dl~~L~rd----~GI~~~--------------------------------nlFDT 350 (1006)
+..|..++ .||+|+ |+||. .+|+..|..+ +|+.+. .++|+
T Consensus 405 L~~F~~~I~~~DPDII-vGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GRv~lDl 483 (1193)
T 2gv9_A 405 LLAFMTLVKQYGPEFV-TGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDM 483 (1193)
T ss_dssp HHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTBEEEEH
T ss_pred HHHHHHHHHhcCCCEE-EEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEcCeEeehH
Confidence 44444444 378875 89997 6699877544 243211 25687
Q ss_pred HhHH-HhCCCCCccHHHHHHHHcCCCCCc-c-ccccc-CCCCCC-ChHHHHHHHhchhHHHHHHHHHH
Q psy7894 351 HQAC-KFLPMPRQSLAYLLKHYCDVDSDK-T-FQLFD-WRHRPL-PEPAIQYARTDTHYLLYVYDCMK 413 (1006)
Q Consensus 351 qlAA-yLLg~~~~SLa~Lve~yLgv~LdK-~-~q~sD-W~~RPL-s~eql~YAA~DA~yLL~Lyd~L~ 413 (1006)
+..+ ..+...+++|..+++++||..-.. . ..... |...+- -...+.|...|+..+++|+..+.
T Consensus 484 ~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl~ 551 (1193)
T 2gv9_A 484 YGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFL 551 (1193)
T ss_dssp HHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7644 334556799999999999964210 0 11111 211110 02356999999999999988763
No 62
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=20.92 E-value=5.2e+02 Score=24.21 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcC
Q psy7894 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 540 (1006)
Q Consensus 461 ~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p 540 (1006)
.|+++-..++.. =-.+|++. .-.||-+.|.|+.|....-.....++.-+|.....++......+ ...
T Consensus 7 ~~T~~a~~~l~~----A~~~A~~~--~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l-------~~~ 73 (145)
T 3fes_A 7 RFTQRAKKAIDL----AFESAKSL--GHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDME-------GKG 73 (145)
T ss_dssp CBCHHHHHHHHH----HHHHHHHT--TCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH-------CCC
T ss_pred ccCHHHHHHHHH----HHHHHHHc--CCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHH-------hcC
Confidence 455554444431 12344444 45699999999999987444456677777776655554333322 111
Q ss_pred CCCCccccCCccchhhhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhh
Q psy7894 541 LTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620 (1006)
Q Consensus 541 ~~~~i~~~~ps~~gir~~q~q~~~pP~ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~ 620 (1006)
+. . + ..+ .+++. ++.+..--...|++.+ -.||-..|.|+.|.+..-.....++.
T Consensus 74 ~~-~-----~------------~~~--~~s~~----~~~vl~~A~~~A~~~~--~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 74 EE-I-----S------------EDI--VLSPR----SKQILELSGMFANKLK--TNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp SC-C-----C------------SCC--EECHH----HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred CC-C-----C------------CCC--CCCHH----HHHHHHHHHHHHHHcC--CCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 10 0 0 001 12332 3444344445555543 36999999999999865434666776
Q ss_pred cCCCChHHHHhhHH
Q psy7894 621 CCNPVPQTVKEHVL 634 (1006)
Q Consensus 621 ~~~~~p~~VR~~g~ 634 (1006)
-+|.....++....
T Consensus 128 ~~gv~~~~l~~~i~ 141 (145)
T 3fes_A 128 YAGVNDRTLAQLTI 141 (145)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHH
Confidence 66777777665543
Done!