Query psy7894
Match_columns 1006
No_of_seqs 555 out of 2070
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 21:34:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7894.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7894hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hbka2 c.55.3.5 (A:129-420) E 100.0 2.1E-59 1.5E-63 508.8 28.2 275 169-448 1-279 (292)
2 d1yt3a3 c.55.3.5 (A:1-193) Rib 100.0 6.7E-34 4.9E-38 290.5 22.3 190 248-443 2-192 (193)
3 d1vk0a_ c.55.3.5 (A:) Hypothet 99.9 2.9E-24 2.1E-28 221.5 10.8 166 248-414 20-205 (206)
4 d1kfsa1 c.55.3.5 (A:324-518) E 99.9 1.5E-22 1.1E-26 201.6 17.9 170 247-417 5-194 (195)
5 d2hhva1 c.55.3.5 (A:298-468) E 99.8 3.3E-19 2.4E-23 178.1 13.6 149 268-418 16-170 (171)
6 d2cpra1 a.60.8.4 (A:483-595) E 99.7 2.8E-18 2.1E-22 160.9 9.2 100 444-543 1-101 (113)
7 d1yt3a1 a.60.8.3 (A:194-294) R 99.6 1.8E-15 1.3E-19 138.5 10.9 93 448-542 3-95 (101)
8 d2hbka1 a.60.8.4 (A:421-516) E 99.6 4.7E-16 3.4E-20 141.5 6.2 79 461-539 13-91 (96)
9 d2cpra1 a.60.8.4 (A:483-595) E 99.5 2.3E-14 1.7E-18 134.0 8.7 89 565-653 16-104 (113)
10 d2hbka1 a.60.8.4 (A:421-516) E 99.4 2.3E-13 1.7E-17 123.5 8.0 77 569-645 14-90 (96)
11 d1yt3a1 a.60.8.3 (A:194-294) R 99.3 1.8E-12 1.3E-16 118.2 9.5 82 568-650 15-96 (101)
12 d1wuda1 a.60.8.1 (A:530-606) H 99.2 2.3E-11 1.7E-15 106.2 7.5 72 467-538 4-75 (77)
13 d1wuda1 a.60.8.1 (A:530-606) H 99.0 4E-10 2.9E-14 98.2 7.7 72 574-645 4-75 (77)
14 d2e1fa1 a.60.8.1 (A:1142-1235) 98.9 6.6E-10 4.8E-14 100.5 7.9 73 463-536 9-81 (94)
15 d2e1fa1 a.60.8.1 (A:1142-1235) 98.6 3.2E-08 2.3E-12 89.2 8.9 77 571-648 10-87 (94)
16 d1wlja_ c.55.3.5 (A:) Interfer 97.8 6.1E-05 4.4E-09 71.8 12.4 132 269-415 1-163 (173)
17 d1x9ma1 c.55.3.5 (A:1-210) Exo 97.3 0.0005 3.7E-08 67.1 10.8 144 270-416 1-183 (204)
18 d3b6oa1 c.55.3.5 (A:9-234) Thr 95.0 0.1 7.3E-06 51.2 12.9 82 320-417 109-208 (226)
19 d1y97a1 c.55.3.5 (A:1-228) Thr 93.9 0.38 2.7E-05 46.9 14.1 82 320-417 110-209 (228)
20 d2guia1 c.55.3.5 (A:7-180) N-t 93.4 0.59 4.3E-05 42.7 13.9 86 310-412 77-172 (174)
21 d1tgoa1 c.55.3.5 (A:1-347) Exo 91.9 1 7.4E-05 47.0 15.0 148 268-416 135-330 (347)
22 d2f96a1 c.55.3.5 (A:19-220) Ri 80.6 8.6 0.00062 35.0 12.7 84 322-420 109-199 (202)
23 d1qtma1 c.55.3.5 (A:293-422) E 76.5 3.2 0.00023 37.2 7.4 106 282-417 24-129 (130)
24 d1s5ja1 c.55.3.5 (A:40-449) Ex 75.2 12 0.00088 39.6 13.5 101 309-414 256-387 (410)
25 d1yt3a2 a.60.8.3 (A:295-375) R 74.6 1.1 8E-05 37.9 3.8 38 572-609 8-45 (81)
26 d2qxfa1 c.55.3.5 (A:8-474) Exo 64.2 23 0.0017 37.3 12.8 90 311-417 79-195 (467)
27 d1q8ia1 c.55.3.5 (A:2-389) Exo 63.7 45 0.0032 34.8 14.8 100 310-412 204-345 (388)
28 d2d5ra1 c.55.3.9 (A:11-262) CC 59.9 13 0.00092 37.3 9.0 85 317-417 136-236 (252)
29 d1d8ba_ a.60.8.1 (A:) HRDC dom 58.2 14 0.001 30.7 7.2 56 470-525 9-64 (81)
30 d1khya_ a.174.1.1 (A:) N-termi 33.1 1.4E+02 0.01 25.4 11.0 123 478-633 15-137 (139)
31 d1d8ba_ a.60.8.1 (A:) HRDC dom 27.5 1.1E+02 0.0082 25.1 7.9 58 575-632 7-64 (81)
32 d1noya_ c.55.3.5 (A:) Exonucle 26.2 38 0.0028 34.5 6.1 101 310-412 194-334 (372)
No 1
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2.1e-59 Score=508.80 Aligned_cols=275 Identities=47% Similarity=0.797 Sum_probs=260.3
Q ss_pred CCCcccccCccCCCCCCCCCcccCCCCCCCCChhhhhhhccc----cccccCCCcHhhhccCCCCccccccCCCCcCCCC
Q psy7894 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD----AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPL 244 (1006)
Q Consensus 169 i~kPQ~~F~~~vDNs~~~pf~p~l~~Kpna~~pl~~~~~~~~----~~~~~~HPYe~Ei~~~~~p~~~~~~~~p~~~~p~ 244 (1006)
|+|||+.|+++||||+++||+|+|++||||++||+..+.... ....+.|||++||.++.||++++...+|.++.++
T Consensus 1 i~~pq~~f~~~~dn~~~~pf~p~l~~k~~a~~~l~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~~~~~~~~ 80 (292)
T d2hbka2 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSW 80 (292)
T ss_dssp CCCGGGGCSSCCCCCCCSCCCCCCSCCSSCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCCCGGGSSCCCCCCCCCG
T ss_pred CCChhhhcCCCCCCCCCCCCccccccCCCcCccchhhhcccccccCCCccCCCCCHHHHhcCCCChhhcCcCCCCCCCCC
Confidence 789999999999999988999999999999999998764332 3567899999999999999999999999999999
Q ss_pred CCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCcee
Q psy7894 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324 (1006)
Q Consensus 245 ~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvK 324 (1006)
+.+++.||+|.++|.++++.|..+..||||+|++++++|.|.+||||||+++.+||||++.++..+..|+++|+|++|+|
T Consensus 81 ~~t~~~~Vdt~e~L~~li~~L~~~~~iavDtE~~~~~s~~g~l~LiQiat~~~~~iiD~~~l~~~l~~L~~ll~d~~I~K 160 (292)
T d2hbka2 81 DDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVK 160 (292)
T ss_dssp GGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSEE
T ss_pred CCCCcEEeCCHHHHHHHHHHHhcCCcEEEEEEeCcCcccCCeEEEEEEEeCCccEEEEecccccchHHHHHHHhccCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999998777889999999999999
Q ss_pred eecchhhHHHHHHHHhCCccCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhH
Q psy7894 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404 (1006)
Q Consensus 325 V~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~y 404 (1006)
||||+++|+.||++++|+.++++|||++|+++||..++||++|+++|||+.++|.+|++||+.|||+++|+.|||.||+|
T Consensus 161 V~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~~~~~sL~~L~~~yl~~~ldK~~q~SdW~~RPLs~~qi~YAa~Da~~ 240 (292)
T d2hbka2 161 VFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 240 (292)
T ss_dssp EESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHT
T ss_pred EeechHhhhhhhhhcccccccchHHHHHHHHHhCccccchHHHHHHhhhhcccccccccccccCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcCCCCCC
Q psy7894 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448 (1006)
Q Consensus 405 LL~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~~~~~ 448 (1006)
|++||+.|+++|.+.| .+.+|+++|+.+|+++|+++.++
T Consensus 241 Ll~ly~~L~~~L~~~~-----~l~~v~~e~~~~~~~~~e~~~~~ 279 (292)
T d2hbka2 241 LLNIYDQLRNKLIESN-----KLAGVLYESRNVAKRRFEYSKYR 279 (292)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCEECCGGGC
T ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999765 57899999999999999876443
No 2
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=6.7e-34 Score=290.53 Aligned_cols=190 Identities=25% Similarity=0.390 Sum_probs=177.6
Q ss_pred CcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCceeeec
Q psy7894 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 327 (1006)
Q Consensus 248 ~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvKV~H 327 (1006)
.|.+|+|.++|.++++.|..++.||||+|+++.+++.+++|+|||++++..|+||++... ....++++|+|+.|.||+|
T Consensus 2 ~y~~I~t~~~l~~~~~~l~~~~~i~~DtE~~~~~~~~~~l~liQi~~~~~~~~id~~~~~-~~~~l~~ll~~~~i~Kv~h 80 (193)
T d1yt3a3 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLH 80 (193)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEEEES
T ss_pred eEEEECCHHHHHHHHHHHhcCCeEEEECcccCCCcCCCcEEEEEEecCCcceeehhcchh-hhHHHHHHhcCCCceEEEe
Confidence 588999999999999999999999999999999999999999999999999999987763 4567889999999999999
Q ss_pred chhhHHHHHHHHhCCccCeeechHhHHHhCCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHH
Q psy7894 328 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406 (1006)
Q Consensus 328 gak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~-~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL 406 (1006)
|+++|+.+|.+.+|+.+.++|||++|+++++.+ .+||+.|++++||+.++|..+.+||+.|||+++|+.|||.||++++
T Consensus 81 n~~~D~~~L~~~~g~~~~~~~Dt~~~~~~l~~~~~~~L~~l~~~~lg~~ldK~~q~sdW~~rPL~~~qi~YAA~Dv~~ll 160 (193)
T d1yt3a3 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160 (193)
T ss_dssp SCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHH
T ss_pred cchhhhhhhhhhcCccccccchhhHHHhhhccccccchhhHHhhhccccccchhhccccccccccHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999975 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcC
Q psy7894 407 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE 443 (1006)
Q Consensus 407 ~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye 443 (1006)
.||+.|..+|.+.| ++.+++++++.++.++++
T Consensus 161 ~L~~~L~~~l~~~~-----~l~~~~~e~~~l~~~~~~ 192 (193)
T d1yt3a3 161 PITAKLMVETEASG-----WLPAALDECRLMQMRRQE 192 (193)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC-----cHHHHHHHHHHHHHhhcC
Confidence 99999999998765 677889999999887764
No 3
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.90 E-value=2.9e-24 Score=221.53 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=138.2
Q ss_pred CcEEeCCHHHHHHHHHHHh------cCCeEEEEeeeccC--------CccCCcEEEEEEEeCCceEEEeCcch-hhhHHH
Q psy7894 248 PLMMITEPEQVTQLVSELK------QQQEIAIDLEYHNY--------RSYQGYTCLMQISTRDKDYIVDTLKL-REDLEV 312 (1006)
Q Consensus 248 ~~~lIdT~e~L~~lle~L~------~a~~IAVDtE~~~~--------rty~g~lcLIQISt~~~~yIID~laL-~~~L~~ 312 (1006)
+...|.+.+++..++..+. ....||||+||.+. ..+.+.+|+||||+.+.+||||.... ...+..
T Consensus 20 ~~i~~~~~~~~~~~~~~i~~~~~~~~~~~v~~D~Ew~~~~~~~~~~~~~~~~~vallQl~t~~~~~l~~l~~~~~~~~~~ 99 (206)
T d1vk0a_ 20 KTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKD 99 (206)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHH
T ss_pred eeEecCCHHHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCCcccccccccCceeEEEEEEeCCCEEEEECCccccccHHH
Confidence 3344555555555555543 35789999999653 23456799999999999999998654 345789
Q ss_pred HHHHHcCCCceeeecchhhHHHHHHHHhCCccCeeec-hHhHHHhCCCC---CccHHHHHHHHcCCCCCccc-ccccCCC
Q psy7894 313 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFD-THQACKFLPMP---RQSLAYLLKHYCDVDSDKTF-QLFDWRH 387 (1006)
Q Consensus 313 L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~nlFD-TqlAAyLLg~~---~~SLa~Lve~yLgv~LdK~~-q~sDW~~ 387 (1006)
|.++|+|++|.||||+++.|+.+|.++||+.+.++|| +++|+++++.+ ++||..|++++||..++|.. +.+||.
T Consensus 100 L~~~L~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~~l~K~~~~~SnW~- 178 (206)
T d1vk0a_ 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWE- 178 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGG-
T ss_pred HHHHhcCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccccchHHHHHHHHhcccCCCcceeecCCC-
Confidence 9999999999999999999999999899999999888 56788888653 58999999999999999854 569996
Q ss_pred CCCChHHHHHHHhchhHHHHHHHHHHH
Q psy7894 388 RPLPEPAIQYARTDTHYLLYVYDCMKL 414 (1006)
Q Consensus 388 RPLs~eql~YAA~DA~yLL~Lyd~L~~ 414 (1006)
|||+.+|+.|||.||++++.||+.|.+
T Consensus 179 ~pLs~~Qi~YAA~DA~~~~~i~~~L~~ 205 (206)
T d1vk0a_ 179 KAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999975
No 4
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=1.5e-22 Score=201.58 Aligned_cols=170 Identities=19% Similarity=0.177 Sum_probs=149.4
Q ss_pred CCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcc-----------hhhhHHHHHH
Q psy7894 247 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-----------LREDLEVLNE 315 (1006)
Q Consensus 247 t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~la-----------L~~~L~~L~e 315 (1006)
..|.+|+|.++|.++++.|..++.+|+|+|+++.+++.+.++++|+++....+++.+.. ....+..|++
T Consensus 5 ~~y~~I~t~~~l~~~l~~l~~~~~~a~DtEt~~l~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 84 (195)
T d1kfsa1 5 DNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84 (195)
T ss_dssp TTSEECCSHHHHHHHHHHHHHSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHH
T ss_pred ccceEECCHHHHHHHHHHHhcCCeEEEEeeeCCCCccccccccceeeccCCcccccccccccccccccccHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999987554433221 1234678999
Q ss_pred HHcCCCceeeecchhhHHHHHHHHhCCcc-CeeechHhHHHhCCCC--CccHHHHHHHHcCCCCCcccccccCCCCCCC-
Q psy7894 316 VLTDKNIVKVFHGADSDIKWLQKDFGLYV-VGMFDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP- 391 (1006)
Q Consensus 316 lLedp~IvKV~Hgak~Dl~~L~rd~GI~~-~nlFDTqlAAyLLg~~--~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs- 391 (1006)
+|+++.+.||+||+++|+.+|. .+|+.+ ..+||||+|+++++.. ++++..++.++++..+++..+..+|+.++++
T Consensus 85 ~le~~~i~ki~hn~~~d~~~l~-~~~~~~~~~~~Dt~~a~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (195)
T d1kfsa1 85 LLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTF 163 (195)
T ss_dssp HHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSSCCCCCHHHHHCSGGGCCCG
T ss_pred HHhcccceeeechHHHHHHHHH-HHhccccCccHHHHHHHHHhcccccccchHHHHHHHhhcccchHhhhcccccCCCCh
Confidence 9999999999999999999995 577766 4689999999999874 6899999999999999988888999999987
Q ss_pred -----hHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 392 -----EPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 392 -----~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
+.|..|||.||.++++||+.|.++|+
T Consensus 164 ~~i~~~~~~~YAa~D~~~t~~L~~~l~~~L~ 194 (195)
T d1kfsa1 164 NQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (195)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77889999999999999999999885
No 5
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=99.78 E-value=3.3e-19 Score=178.11 Aligned_cols=149 Identities=12% Similarity=-0.027 Sum_probs=127.1
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCceeeecchhhHHHHHHHHhCCccCe-
Q psy7894 268 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG- 346 (1006)
Q Consensus 268 a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~n- 346 (1006)
...+|||+|+.+.+.+.+.+++++|++++++|+|++... .....|.++|+|+++.||+||+++|+.+| +.+|+.+.+
T Consensus 16 ~~~~a~~~E~~~~n~~~~~iiGi~i~~~~~~~~i~~~~~-~~~~~l~~~l~~~~~~ki~hn~K~d~~~L-~~~gi~~~~~ 93 (171)
T d2hhva1 16 ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETA-LADPQFVAWLGDETKKKSMFDSKRAAVAL-KWKGIELCGV 93 (171)
T ss_dssp CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHHH-TTCHHHHHHHHCTTSEEEESSHHHHHHHH-HTTTCCCCCE
T ss_pred cCCeEEEEEcCCCccccCeEEEEEEEECCCEEEEechhh-hhHHHHHHHHhCccceeeccchHHHHHHH-HHCCCCCccc
Confidence 357899999999888899999999999999998875433 23467999999999999999999999999 568999875
Q ss_pred eechHhHHHhCCCC--CccHHHHHHHHcCCCCCccccc---ccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHHH
Q psy7894 347 MFDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQL---FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 418 (1006)
Q Consensus 347 lFDTqlAAyLLg~~--~~SLa~Lve~yLgv~LdK~~q~---sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e 418 (1006)
+||||+|+|+|++. .++|+.|+++|++..+.+.... ..+...|..+.+..||+.||.+++.|++.|..+|.+
T Consensus 94 ~fDt~laayll~p~~~~~~L~~la~~yl~~~~~~~e~~~gkg~k~~~~~~~~~~~yaa~da~~~~~L~~~l~~~L~e 170 (171)
T d2hhva1 94 SFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR 170 (171)
T ss_dssp EEEHHHHHHHHCGGGCCCSHHHHHHTTTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhcCCcccccHHHHHHHHcCCCCccceeccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 69999999999884 5899999999999988643322 234456777889999999999999999999999975
No 6
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=2.8e-18 Score=160.91 Aligned_cols=100 Identities=48% Similarity=0.942 Sum_probs=94.4
Q ss_pred CCCCChhhhHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhH
Q psy7894 444 KPVFNEEGYMNIFRSHA-LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522 (1006)
Q Consensus 444 ~~~~~~~~~~~l~~k~~-~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~v 522 (1006)
+|.+++++|++++++.. .|+++|+++|++|+.|||++||+.|+|++|||+|.+|++||..+|+|.++|.+++|+.++.+
T Consensus 1 kp~~~e~~~~~l~~k~~~~l~~~qlavl~~L~~wRe~~Ar~~d~p~~~Vl~d~~L~~iA~~~P~~~~~L~~~~~~~~~~~ 80 (113)
T d2cpra1 1 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 80 (113)
T ss_dssp CCCCCCTTCHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCSSSHHHHHTSSSCCTTT
T ss_pred CCCCChHhHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHhCCCcceeeCHHHHHHHHHhCCCCHHHHHhhhCCChHHh
Confidence 46778889999988765 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHhhcCCCC
Q psy7894 523 KEHVLDIHAIILKARLQSLTK 543 (1006)
Q Consensus 523 R~~~~eil~iI~~Ar~~p~~~ 543 (1006)
++||++|+++|++|++.|...
T Consensus 81 r~~g~~il~~I~~a~~~p~~~ 101 (113)
T d2cpra1 81 RQQINEMHLLIQQAREMPLLK 101 (113)
T ss_dssp TTTHHHHHHHHHHHHHSCCCS
T ss_pred hhhHHHHHHHHHHHHhCCccc
Confidence 999999999999999988764
No 7
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=99.59 E-value=1.8e-15 Score=138.50 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=84.4
Q ss_pred ChhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHH
Q psy7894 448 NEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVL 527 (1006)
Q Consensus 448 ~~~~~~~l~~k~~~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~ 527 (1006)
+++.|+++.+ ...|+++++++|++|+.|||.+|++.|+|+++||+|++|++||..+|+|.++|.++ |..+..+++||.
T Consensus 3 Pe~~w~~ikg-~~~L~~~~l~~l~~L~~WRe~~A~~~d~p~~~Vl~d~~L~~la~~~P~~~~eL~~i-~~~~~~~~~~g~ 80 (101)
T d1yt3a1 3 PEDAWRDITN-AWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGK 80 (101)
T ss_dssp GGGGGGGSTT-GGGSCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHH
T ss_pred hHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHHhCCCcceeECHHHHHHHHHHCCCCHHHHHHc-CCCHHHHHHHHH
Confidence 4567877622 34899999999999999999999999999999999999999999999999999988 889999999999
Q ss_pred HHHHHHHHHhhcCCC
Q psy7894 528 DIHAIILKARLQSLT 542 (1006)
Q Consensus 528 eil~iI~~Ar~~p~~ 542 (1006)
+|+++|++|.+.+.+
T Consensus 81 ~il~~i~~a~~~~~~ 95 (101)
T d1yt3a1 81 TLLALVEKAQTLPED 95 (101)
T ss_dssp HHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHhCCHh
Confidence 999999999987654
No 8
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.58 E-value=4.7e-16 Score=141.50 Aligned_cols=79 Identities=32% Similarity=0.562 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhc
Q psy7894 461 LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539 (1006)
Q Consensus 461 ~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~ 539 (1006)
.|+++++++|++|+.|||.+||+.|+|++|||+|++|++||..+|+|.++|.+|+|+.++.+++||++|+++|++|++.
T Consensus 13 ~l~~~~~~l~~~L~~wR~~~Ar~~d~~~~~Vl~d~~L~~iA~~~P~~~~eL~~i~g~~~~~~~~~g~eil~~I~~a~~~ 91 (96)
T d2hbka1 13 NIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRN 91 (96)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCceeeeCHHHHHHHHHHCCCCHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998764
No 9
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.48 E-value=2.3e-14 Score=134.00 Aligned_cols=89 Identities=47% Similarity=0.859 Sum_probs=84.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhh
Q psy7894 565 PPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 644 (1006)
Q Consensus 565 pP~ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar 644 (1006)
....++++|+++|+.|+.||+.+|+++|+|+++||+|.+|.+||+..|.+.++|.+++++.++.+|+||.+|+++|..|+
T Consensus 16 ~~~~l~~~qlavl~~L~~wRe~~Ar~~d~p~~~Vl~d~~L~~iA~~~P~~~~~L~~~~~~~~~~~r~~g~~il~~I~~a~ 95 (113)
T d2cpra1 16 QKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAR 95 (113)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCSSSHHHHHTSSSCCTTTTTTHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhCCCcceeeCHHHHHHHHHhCCCCHHHHHhhhCCChHHhhhhHHHHHHHHHHHH
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcc
Q psy7894 645 LQPLTKPVE 653 (1006)
Q Consensus 645 ~~~~~~~~~ 653 (1006)
+.|..+++.
T Consensus 96 ~~p~~~~~~ 104 (113)
T d2cpra1 96 EMPLLKSEV 104 (113)
T ss_dssp HSCCCSCCC
T ss_pred hCCccccch
Confidence 999888764
No 10
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.39 E-value=2.3e-13 Score=123.47 Aligned_cols=77 Identities=32% Similarity=0.567 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhc
Q psy7894 569 SNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 645 (1006)
Q Consensus 569 l~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~ 645 (1006)
+++.|+++|++|+.||+.+||++|+|+++||++++|.+||+..|.+.++|.+|+|+.+..++.||.+|+++|..|.+
T Consensus 14 l~~~~~~l~~~L~~wR~~~Ar~~d~~~~~Vl~d~~L~~iA~~~P~~~~eL~~i~g~~~~~~~~~g~eil~~I~~a~~ 90 (96)
T d2hbka1 14 IPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALR 90 (96)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCceeeeCHHHHHHHHHHCCCCHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999875
No 11
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=99.32 E-value=1.8e-12 Score=118.24 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=77.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhcCC
Q psy7894 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQP 647 (1006)
Q Consensus 568 ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~~~ 647 (1006)
.++++|+++|+.|+.||+.+|+++|+|+++|+++++|.+||+.+|++.++|.++ |+.+..+++||.+|+++|+.|...+
T Consensus 15 ~L~~~~l~~l~~L~~WRe~~A~~~d~p~~~Vl~d~~L~~la~~~P~~~~eL~~i-~~~~~~~~~~g~~il~~i~~a~~~~ 93 (101)
T d1yt3a1 15 QLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLP 93 (101)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCcceeECHHHHHHHHHHCCCCHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 367899999999999999999999999999999999999999999999999998 8999999999999999999998876
Q ss_pred CCC
Q psy7894 648 LTK 650 (1006)
Q Consensus 648 ~~~ 650 (1006)
.+.
T Consensus 94 ~~~ 96 (101)
T d1yt3a1 94 EDA 96 (101)
T ss_dssp GGG
T ss_pred Hhh
Confidence 543
No 12
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=99.15 E-value=2.3e-11 Score=106.21 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhh
Q psy7894 467 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 538 (1006)
Q Consensus 467 lavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~ 538 (1006)
..++.+|..||.++|+..|+|+++|++|.+|.+||+.+|+|.++|..+.|+.+..+++||.+|+++|++..+
T Consensus 4 ~~L~~~L~~~R~~~A~~~~ip~~~I~~d~~L~~ia~~~P~s~~~L~~I~G~g~~k~~~yG~~il~~i~~~~~ 75 (77)
T d1wuda1 4 RKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHHCCCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999999999999999999999999999999999999987654
No 13
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=98.97 E-value=4e-10 Score=98.21 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhc
Q psy7894 574 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 645 (1006)
Q Consensus 574 lavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~ 645 (1006)
..+++.|..||..+|++.|+|+.+|+++.+|.+||+..|+++++|..+.|+.+..+++||.+|+++|++..+
T Consensus 4 ~~L~~~L~~~R~~~A~~~~ip~~~I~~d~~L~~ia~~~P~s~~~L~~I~G~g~~k~~~yG~~il~~i~~~~~ 75 (77)
T d1wuda1 4 RKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHHCCCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999999999999999999999999999999997653
No 14
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.94 E-value=6.6e-10 Score=100.47 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHH
Q psy7894 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 536 (1006)
Q Consensus 463 ~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~A 536 (1006)
+..+.+++..|..||..+|+..|+||++|++|.+|.+||+.+|+|.++|.++.|+....+++||. ++.+|.+-
T Consensus 9 ~~~~~~L~~~L~~~R~~~A~~~~ip~~~I~~d~~L~~ia~~~P~t~~eL~~I~G~g~~k~~kyG~-~l~~I~~~ 81 (94)
T d2e1fa1 9 QETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHF 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHTHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCHheeeCHHHHHHHHHcCCCCHHHHcCCCCCCHHHHHHHHH-HHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999995 88888764
No 15
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.64 E-value=3.2e-08 Score=89.25 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHH-hhcCCC
Q psy7894 571 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK-ARLQPL 648 (1006)
Q Consensus 571 ~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~-Ar~~~~ 648 (1006)
..+..+++.|..||..+|+++|+|+.+|+++.+|.+||+..|.++++|.++.|+...-+.+||. ++.+|.+ +.+.+.
T Consensus 10 ~~~~~L~~~L~~~R~~~A~~~~ip~~~I~~d~~L~~ia~~~P~t~~eL~~I~G~g~~k~~kyG~-~l~~I~~~~~e~~~ 87 (94)
T d2e1fa1 10 ETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNSV 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHTHH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHheeeCHHHHHHHHHcCCCCHHHHcCCCCCCHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 3578899999999999999999999999999999999999999999999999999999999996 7666655 444433
No 16
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.82 E-value=6.1e-05 Score=71.78 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=81.5
Q ss_pred CeEEEEeeeccCCccCCc-EEEEEEEeCCceEEE----eCc-c-------h--------------hhhHHHHHHHHcCCC
Q psy7894 269 QEIAIDLEYHNYRSYQGY-TCLMQISTRDKDYIV----DTL-K-------L--------------REDLEVLNEVLTDKN 321 (1006)
Q Consensus 269 ~~IAVDtE~~~~rty~g~-lcLIQISt~~~~yII----D~l-a-------L--------------~~~L~~L~elLedp~ 321 (1006)
..|+||+|+.+..+.... ++.+.|...++..++ .+. . + .+.+..+..++.+.
T Consensus 1 ~~v~iD~EttGl~~~~~~ii~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~~~~~~~~~~~~~~~~~- 79 (173)
T d1wlja_ 1 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKGK- 79 (173)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTTS-
T ss_pred CEEEEEEEcCCCCCCCCcEEEEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCCcHHHHHHHHHhhcccc-
Confidence 368999999998765543 444555444332222 221 0 0 12345566777654
Q ss_pred ceeeecchhhHHHHHHHHhCCc-c-CeeechHhHHHhCCC--CCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHH
Q psy7894 322 IVKVFHGADSDIKWLQKDFGLY-V-VGMFDTHQACKFLPM--PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQY 397 (1006)
Q Consensus 322 IvKV~Hgak~Dl~~L~rd~GI~-~-~nlFDTqlAAyLLg~--~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~Y 397 (1006)
.-|+||+.+|+..|.+.+.-. + ....||+..++.... .+++|..|++.|++..+...... +.
T Consensus 80 -~lv~hn~~fD~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~~~~~~-------------H~ 145 (173)
T d1wlja_ 80 -LVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLG-------------HS 145 (173)
T ss_dssp -EEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTC-------------CC
T ss_pred -eEEeechHhHHHHHHHhhccCcccchhHHHHHHHHHhhcccCCcCHHHHHHHHhCCcccCCCCC-------------CC
Confidence 349999999999994322111 1 135688877665543 35899999999998766432221 23
Q ss_pred HHhchhHHHHHHHHHHHH
Q psy7894 398 ARTDTHYLLYVYDCMKLD 415 (1006)
Q Consensus 398 AA~DA~yLL~Lyd~L~~e 415 (1006)
|..||.++..||..+...
T Consensus 146 Al~Da~at~~l~~~~~~~ 163 (173)
T d1wlja_ 146 SVEDARATMELYQISQRI 163 (173)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 889999999999776543
No 17
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=97.29 E-value=0.0005 Score=67.05 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=87.3
Q ss_pred eEEEEeeeccCCccCCcEEEEEEEe-C-CceEEEeCcchhhhHHHHHHHHcCCCceeeecch-hhHHHHHHHHhCCc---
Q psy7894 270 EIAIDLEYHNYRSYQGYTCLMQIST-R-DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA-DSDIKWLQKDFGLY--- 343 (1006)
Q Consensus 270 ~IAVDtE~~~~rty~g~lcLIQISt-~-~~~yIID~laL~~~L~~L~elLedp~IvKV~Hga-k~Dl~~L~rd~GI~--- 343 (1006)
.+++|+|+.++..-...+..|.+.. . +..+.++.-.....+..|.+++.++.++ |+||. .+|+.+|.+.++..
T Consensus 1 il~~DIET~gl~~~~~~I~ci~~~d~~~~~~~~~~~~~~~~~l~~~~~~l~~~D~i-vghN~~~FD~P~L~~~~~~~~~~ 79 (204)
T d1x9ma1 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLI-VFHNGHKYDVPALTKLAKLQLNR 79 (204)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHHTTCCE-EESSTTTTHHHHHHHHHHHHHCC
T ss_pred CEEEEecCCCCCCCCCEEEEEEEEECCCCeEEEEeCCCchhHHHHHHHHHhcCCEE-EEEccccccHHHHHHHHHHhccC
Confidence 3789999987754333442233333 2 2444455433334467788888899875 99995 69999986554321
Q ss_pred -----cCeeechHhHHHhCCC--------------CCccHHHHH-------HHHcCC-------CCCcccccccCCCCCC
Q psy7894 344 -----VVGMFDTHQACKFLPM--------------PRQSLAYLL-------KHYCDV-------DSDKTFQLFDWRHRPL 390 (1006)
Q Consensus 344 -----~~nlFDTqlAAyLLg~--------------~~~SLa~Lv-------e~yLgv-------~LdK~~q~sDW~~RPL 390 (1006)
...+.|+.+.+.+..+ ..++|.... ..+.|. .........+|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~k~~~~~~~~~~~~~~~~~~~~~~~w~~~-- 157 (204)
T d1x9ma1 80 EFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNF-- 157 (204)
T ss_dssp CCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSC--
T ss_pred CcCcCcchhhhhhhhhhhccccchhhhhccccccccchhhhhhhcccCchhhhhccchhhccccchhhhhhhhhhhhh--
Confidence 2357899998887532 123332221 122111 00111233466443
Q ss_pred ChHHHHHHHhchhHHHHHHHHHHHHH
Q psy7894 391 PEPAIQYARTDTHYLLYVYDCMKLDL 416 (1006)
Q Consensus 391 s~eql~YAA~DA~yLL~Lyd~L~~eL 416 (1006)
.++|+.|+..||..+.+||+.|...+
T Consensus 158 ~~em~~Yc~qDV~lt~~L~~~l~~~~ 183 (204)
T d1x9ma1 158 NEEMMDYNVQDVVVTKALLEKLLSDK 183 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999987554
No 18
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.99 E-value=0.1 Score=51.24 Aligned_cols=82 Identities=20% Similarity=0.097 Sum_probs=57.9
Q ss_pred CCceeeecch-hhHHHHHHHH---hCCcc----CeeechHhHHHhCC----------CCCccHHHHHHHHcCCCCCcccc
Q psy7894 320 KNIVKVFHGA-DSDIKWLQKD---FGLYV----VGMFDTHQACKFLP----------MPRQSLAYLLKHYCDVDSDKTFQ 381 (1006)
Q Consensus 320 p~IvKV~Hga-k~Dl~~L~rd---~GI~~----~nlFDTqlAAyLLg----------~~~~SLa~Lve~yLgv~LdK~~q 381 (1006)
....-|+||+ .+|...|.+. +|+.. ...+||+..++.+- ...++|..|+++++|+.....+
T Consensus 109 ~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDtl~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~~g~~~~~aH- 187 (226)
T d3b6oa1 109 QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDSH- 187 (226)
T ss_dssp SSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTC---------CCCSHHHHHHHHHSSCCSSTT-
T ss_pred CCceEEEechhHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHhcccccccccccccCcchHHHHHHHcCCCCCCCc-
Confidence 4455699996 8999998643 45543 13589997765432 1247899999999887653222
Q ss_pred cccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 382 ~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
=|-.||..+..|+..+.++|.
T Consensus 188 ---------------~Al~D~~~~~~l~~~~~~~l~ 208 (226)
T d3b6oa1 188 ---------------TAEGDVLTLLSICQWKPQALL 208 (226)
T ss_dssp ---------------SHHHHHHHHHHHHTSSHHHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHHH
Confidence 288899999999988877664
No 19
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.86 E-value=0.38 Score=46.91 Aligned_cols=82 Identities=26% Similarity=0.277 Sum_probs=56.1
Q ss_pred CCceeeecch-hhHHHHHHHH---hCCccC---eeechHhHHHhCC-----------CCCccHHHHHHHHcCCCCCcccc
Q psy7894 320 KNIVKVFHGA-DSDIKWLQKD---FGLYVV---GMFDTHQACKFLP-----------MPRQSLAYLLKHYCDVDSDKTFQ 381 (1006)
Q Consensus 320 p~IvKV~Hga-k~Dl~~L~rd---~GI~~~---nlFDTqlAAyLLg-----------~~~~SLa~Lve~yLgv~LdK~~q 381 (1006)
....-|+||+ .+|...|... +|+.+. ..+||+..++.+. ..+++|+.|+++|+|....+
T Consensus 110 ~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~~~iDtl~~~r~l~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~--- 186 (228)
T d1y97a1 110 GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSA--- 186 (228)
T ss_dssp SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCCC----
T ss_pred CCceEEeechHHHhHHHHHHHHHHcCCCCCCCcchhhHHHHHHHhhhhcccccccCcCCCcCHHHHHHHhcCCCCCC---
Confidence 3445588885 7998877543 566542 4679987765431 12468999999998865432
Q ss_pred cccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 382 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 382 ~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
.+-|-.||..++.|+..|..+|.
T Consensus 187 -------------aH~Al~Da~at~~l~~~~~~~l~ 209 (228)
T d1y97a1 187 -------------AHSAEGDVHTLLLIFLHRAAELL 209 (228)
T ss_dssp ---------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 23488999999999988877664
No 20
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=93.36 E-value=0.59 Score=42.67 Aligned_cols=86 Identities=23% Similarity=0.302 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCceeeecchhhHHHHHHHH---hCCcc------CeeechHhHHHhCCC-CCccHHHHHHHHcCCCCCcc
Q psy7894 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV------VGMFDTHQACKFLPM-PRQSLAYLLKHYCDVDSDKT 379 (1006)
Q Consensus 310 L~~L~elLedp~IvKV~Hgak~Dl~~L~rd---~GI~~------~nlFDTqlAAyLLg~-~~~SLa~Lve~yLgv~LdK~ 379 (1006)
+..|..++.+.. -|+|+...|...+... ++... ..+.|++..++.+.+ ...+|..++.+| |+..+..
T Consensus 77 ~~~~~~~~~~~~--~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~ 153 (174)
T d2guia1 77 ADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARY-EIDNSKR 153 (174)
T ss_dssp HHHHHHHHTTSE--EEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHT-TCCCTTC
T ss_pred HHHHHHhcCCCe--EEEeecchhhHHHHHHHHHhCCCCCCcccccchhhHHHHHHHHcCCCCCCHHHHHHHc-CCCCCCC
Confidence 455667777654 4899999998776433 33332 246799887766654 357999998875 5443321
Q ss_pred cccccCCCCCCChHHHHHHHhchhHHHHHHHHH
Q psy7894 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412 (1006)
Q Consensus 380 ~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L 412 (1006)
.. +=|..||..+..||-.|
T Consensus 154 -~~-------------H~Al~Da~~ta~v~~~l 172 (174)
T d2guia1 154 -TL-------------HGALLDAQILAEVYLAM 172 (174)
T ss_dssp -SS-------------CCHHHHHHHHHHHHHHH
T ss_pred -CC-------------cCHHHHHHHHHHHHHHH
Confidence 11 12889999999999877
No 21
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}
Probab=91.94 E-value=1 Score=47.03 Aligned_cols=148 Identities=14% Similarity=0.179 Sum_probs=88.4
Q ss_pred CCeEEEEeeeccCCc-cCCcEEEEEEEeC--CceEEE--eCc---ch------hhhHHHHHHHHc--CCCceeeecch-h
Q psy7894 268 QQEIAIDLEYHNYRS-YQGYTCLMQISTR--DKDYIV--DTL---KL------REDLEVLNEVLT--DKNIVKVFHGA-D 330 (1006)
Q Consensus 268 a~~IAVDtE~~~~rt-y~g~lcLIQISt~--~~~yII--D~l---aL------~~~L~~L~elLe--dp~IvKV~Hga-k 330 (1006)
...+++|.|..+... ..+.-+.++|+.. ....++ +.. .. .+.+..+..++. ||.|+ +|||. .
T Consensus 135 ~r~~s~DIE~~~~~g~~~~~~~I~~Is~~~~~~~~~~~~~~~~~~~v~~~~~E~~lL~~f~~~i~~~dPDii-~g~N~~~ 213 (347)
T d1tgoa1 135 LKMLAFDIETLYHEGEEFAEGPILMISYADEEGARVITWKNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVL-ITYNGDN 213 (347)
T ss_dssp CCEEEEEEEECCCSSSSTTCSCEEEEEEEETTEEEEEESSCCCCTTEEECSSHHHHHHHHHHHHHHHCCSEE-EESSGGG
T ss_pred ceEEEEEEEeccCCCCCcccCcEEEEEEecCCCcEEEEecCccCccceeeCCHHHHHHHHHHHHhhcCccce-eeccccC
Confidence 357899999864332 1223345666653 333332 111 00 122444444444 78875 78998 6
Q ss_pred hHHHHHHH---HhCCcc------------------------CeeechHhHHHh-CCCCCccHHHHHHHHcCCCCCc-c-c
Q psy7894 331 SDIKWLQK---DFGLYV------------------------VGMFDTHQACKF-LPMPRQSLAYLLKHYCDVDSDK-T-F 380 (1006)
Q Consensus 331 ~Dl~~L~r---d~GI~~------------------------~nlFDTqlAAyL-Lg~~~~SLa~Lve~yLgv~LdK-~-~ 380 (1006)
+|+..|.. .+|+.. ..++|++.+.+- ...++++|..+++++||..-.. . .
T Consensus 214 FD~pyL~~R~~~~~i~~~~~r~~~~~~~~~~~~~~~~~i~Gr~~~D~~~~~~~~~~l~sy~L~~va~~~l~~~K~~~~~~ 293 (347)
T d1tgoa1 214 FDFAYLKKRSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKVYAE 293 (347)
T ss_dssp THHHHHHHHHHHTTCCCCCSTTSCCCEEEECSSSEEEECTTSEEEEHHHHHHHHCCCSCCCHHHHHHHHHSSCCCCCCHH
T ss_pred CchHHHHHHHHHhCCCCccccccCccceeccCceeEEecCCeEEeeHHHHHHHhcccccccHHHHHHHhcCCCCCCCCHH
Confidence 79988753 456541 137898877653 5667899999999999864321 1 1
Q ss_pred ccc-cCCCCCCChHHHHHHHhchhHHHHHHHHHHHHH
Q psy7894 381 QLF-DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416 (1006)
Q Consensus 381 q~s-DW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL 416 (1006)
... -|....--...+.|...||..++.|+..|....
T Consensus 294 ~i~~~~~~~~~~~~~~~Y~~~D~~l~~~L~~kl~~~~ 330 (347)
T d1tgoa1 294 EIAQAWETGEGLERVARYSMEDAKVTYELGKEFFPME 330 (347)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122111125689999999999999988764433
No 22
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=80.64 E-value=8.6 Score=35.03 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=54.1
Q ss_pred ceeeecchhhHHHHHHH---HhCCcc--CeeechHhHHHhCC--CCCccHHHHHHHHcCCCCCcccccccCCCCCCChHH
Q psy7894 322 IVKVFHGADSDIKWLQK---DFGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 394 (1006)
Q Consensus 322 IvKV~Hgak~Dl~~L~r---d~GI~~--~nlFDTqlAAyLLg--~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eq 394 (1006)
...++|+...|...+.. .+|... ...+|+.....+.. ....+|..++.. +|+..+.. ..
T Consensus 109 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~gi~~~~~-~a------------ 174 (202)
T d2f96a1 109 AILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQA-AGMEFDNR-EA------------ 174 (202)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHHH-TTCCCCTT-SC------------
T ss_pred cceeeeehhhhHHHHHHHHHHhCCCcCCCcccchhhhhhhhhcccCCcCHHHHHHH-cCCCCCCC-CC------------
Confidence 45578888888877643 334433 23455554443322 234688888765 46654321 11
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHhc
Q psy7894 395 IQYARTDTHYLLYVYDCMKLDLSAAA 420 (1006)
Q Consensus 395 l~YAA~DA~yLL~Lyd~L~~eL~e~g 420 (1006)
+=|-.||.++..||..|.++|.++|
T Consensus 175 -H~Al~Da~~ta~i~~~l~~~~~~~~ 199 (202)
T d2f96a1 175 -HSARYDTEKTAELFCGIVNRWKEMG 199 (202)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHcC
Confidence 1288999999999999999999887
No 23
>d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]}
Probab=76.45 E-value=3.2 Score=37.19 Aligned_cols=106 Identities=11% Similarity=0.031 Sum_probs=69.3
Q ss_pred ccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCceeeecchhhHHHHHHHHhCCccCeeechHhHHHhCCCCC
Q psy7894 282 SYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361 (1006)
Q Consensus 282 ty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~~ 361 (1006)
++...+-.+.-+..+.+|-- .+.+..|+.+=+ |---...|+.+|.-.-|+.+.+--|.|+.+|||++.+
T Consensus 24 pmwa~l~~laaa~~grv~r~-----~~~l~~l~~l~e------~r~llakdlavlalreG~~v~PgDDPmLlAYLlDPsN 92 (130)
T d1qtma1 24 PMWADLLALAAARGGRVHRA-----PEPYKALRDLKE------ARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 92 (130)
T ss_dssp TTTCCEEEEEEEETTEEEEC-----SSHHHHHTTCSC------BCSTTHHHHHHHHHHTTCCCCBCCCHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHhcCceecC-----CCcHHHHhchHH------HHHHHHHHHHHHHhcccccCCCCCchhHHHHhcCcCC
Confidence 45555555544445555521 123444443322 2222467888887778988888889999999999988
Q ss_pred ccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 362 ~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
...+.++.+| |- +|... |+..+....+|++.|..+|.
T Consensus 93 T~p~~varRY-gg---------ew~eD---------a~~RA~~~~rL~~~L~~rl~ 129 (130)
T d1qtma1 93 TTPEGVARRY-GG---------EWTEE---------AGERAALSERLFANLWGRLE 129 (130)
T ss_dssp CSHHHHHHHH-TC---------CCCSC---------HHHHHHHHHHHHHHHHHHTT
T ss_pred CCcchhhHhc-CC---------CCCcc---------HHHHHHHHHHHHHHHHHhhc
Confidence 8899999999 42 34321 66677777778888776653
No 24
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Probab=75.16 E-value=12 Score=39.55 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=62.5
Q ss_pred hHHHHHHHHcCCCceeeecch-hhHHHHHHHH---hCCccC-----------------eee--------chHhHHHh-CC
Q psy7894 309 DLEVLNEVLTDKNIVKVFHGA-DSDIKWLQKD---FGLYVV-----------------GMF--------DTHQACKF-LP 358 (1006)
Q Consensus 309 ~L~~L~elLedp~IvKV~Hga-k~Dl~~L~rd---~GI~~~-----------------nlF--------DTqlAAyL-Lg 358 (1006)
.+..+..++.+|.|+ ++||. .+|+..|..+ +|+... .-+ |++..... ..
T Consensus 256 LL~~F~~~i~dpDii-~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 334 (410)
T d1s5ja1 256 LLGRFFDILLEYPIV-LTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGK 334 (410)
T ss_dssp HHHHHHHHHTTCSEE-EESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTC
T ss_pred HHHHHHhhhcccceE-EEecccCCcHHHHHHHHHHhCCccccccccccCccceeEecceEEEecceeeehHHHHHhhccC
Confidence 456777788899985 88987 5599887543 344210 011 22222211 12
Q ss_pred CCCccHHHHHHHHcCCCC-CcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHH
Q psy7894 359 MPRQSLAYLLKHYCDVDS-DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 414 (1006)
Q Consensus 359 ~~~~SLa~Lve~yLgv~L-dK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~ 414 (1006)
.++++|..+++++||..- +-.....+|. -...+.|...||..+++|+..+..
T Consensus 335 l~sy~Ld~Va~~~Lg~~K~d~~~~~~~~~----~~~l~~Y~~~D~~L~~~L~~~~~~ 387 (410)
T d1s5ja1 335 YNEYNLDAVAKALLGTSKVKVDTLISFLD----VEKLIEYNFRDAEITLQLTTFNND 387 (410)
T ss_dssp CSSCSHHHHHHHHHCCCCC--SSCTTTCC----HHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred CCCCCHHHHHHHHhCcCcccCCCccccCC----HHHHHHhhHHHHHHHHHHHhhhhH
Confidence 357899999999999632 1111112221 156899999999999999776653
No 25
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=74.64 E-value=1.1 Score=37.89 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q psy7894 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 609 (1006)
Q Consensus 572 ~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~ 609 (1006)
..+.++++|++.-..+|++.++++.+|++++.|.++.+
T Consensus 8 ~yK~~~K~lk~~v~~~Ae~~~IapelLaskkdle~ll~ 45 (81)
T d1yt3a2 8 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLN 45 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHhcCHHHHHHHHH
Confidence 47889999999999999999999999999999999987
No 26
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}
Probab=64.22 E-value=23 Score=37.31 Aligned_cols=90 Identities=12% Similarity=0.015 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCceeeec-chhhHHHHHHHHh---CCcc--------CeeechHhHHHhC---CC------------CCcc
Q psy7894 311 EVLNEVLTDKNIVKVFH-GADSDIKWLQKDF---GLYV--------VGMFDTHQACKFL---PM------------PRQS 363 (1006)
Q Consensus 311 ~~L~elLedp~IvKV~H-gak~Dl~~L~rd~---GI~~--------~nlFDTqlAAyLL---g~------------~~~S 363 (1006)
..+..+|..+...-|+| +..+|...|.+.+ ++.+ ...+|+...++.+ .+ +.+.
T Consensus 79 ~~i~~~~~~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~k 158 (467)
T d2qxfa1 79 ARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFR 158 (467)
T ss_dssp HHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCC
T ss_pred HHHHHHHhcCCCcEEEEecchhhHHHHHHHHHHhcccchhhcccccccchhhhhhhhhccccCCchhhhhhccccchhhh
Confidence 44556776544444555 5799999986532 3321 2367887666532 11 2467
Q ss_pred HHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 364 LAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 364 La~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
|..|+..+ |+..... +=|..||.++..|+..|.....
T Consensus 159 L~~la~~~-gi~~~~a----------------H~Al~D~~~t~~l~~~i~~~~~ 195 (467)
T d2qxfa1 159 LEHLTKAN-GIEHSNA----------------HDAMADVYATIAMAKLVKTRQP 195 (467)
T ss_dssp HHHHHHHT-TCCCC-------------------CTTHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHh-CCCcccc----------------ccccCCHHHHHHHHHHhhhhhH
Confidence 88887765 5543211 2277899999999988876654
No 27
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}
Probab=63.70 E-value=45 Score=34.76 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=60.6
Q ss_pred HHHHHHHHc--CCCceeeecch-hhHHHHHHHH---hCCc-------------------------c--CeeechHhHHHh
Q psy7894 310 LEVLNEVLT--DKNIVKVFHGA-DSDIKWLQKD---FGLY-------------------------V--VGMFDTHQACKF 356 (1006)
Q Consensus 310 L~~L~elLe--dp~IvKV~Hga-k~Dl~~L~rd---~GI~-------------------------~--~nlFDTqlAAyL 356 (1006)
+..+..++. ||.|+ +|||. .+|+..|..+ +|+. + ..++|.+.+..-
T Consensus 204 L~~F~~~i~~~dPDii-~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~ 282 (388)
T d1q8ia1 204 LEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKS 282 (388)
T ss_dssp HHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCCEE-EecCCCCCCHHHHHHHHHHhCCCchhhhcCCcceeEEccccccceeeecceEEEeehhHHHHh
Confidence 455555555 89886 88987 5799888653 3332 1 125787766543
Q ss_pred --CCCCCccHHHHHHHHcCCCCC--cccc-cc----cCCCCCCChHHHHHHHhchhHHHHHHHHH
Q psy7894 357 --LPMPRQSLAYLLKHYCDVDSD--KTFQ-LF----DWRHRPLPEPAIQYARTDTHYLLYVYDCM 412 (1006)
Q Consensus 357 --Lg~~~~SLa~Lve~yLgv~Ld--K~~q-~s----DW~~RPLs~eql~YAA~DA~yLL~Lyd~L 412 (1006)
+..++++|..+++++||..-. ..+. .. .|... ....+.|...||..++.|++.+
T Consensus 283 ~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~~~d--~~~l~~Y~~~D~~Lv~~L~~k~ 345 (388)
T d1q8ia1 283 AFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAED--KPALATYNLKDCELVTQIFHKT 345 (388)
T ss_dssp SCCCCSCCCHHHHHHTTC------------CTHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccCHhHhhhhhhcccccccChhhhHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 355679999999999986321 1000 00 01100 1447899999999999998765
No 28
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.87 E-value=13 Score=37.30 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=59.9
Q ss_pred HcCCCceeeecchhhHHHHHHHHh-C--Cc-------------cCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCccc
Q psy7894 317 LTDKNIVKVFHGADSDIKWLQKDF-G--LY-------------VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTF 380 (1006)
Q Consensus 317 Ledp~IvKV~Hgak~Dl~~L~rd~-G--I~-------------~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~ 380 (1006)
+.++++..|+|++.+|+--|.+.+ | +. ...++||-..+..+..-+-||.+|++. ||+.--
T Consensus 136 ~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~eF~~~v~~~FP~vyDtK~l~~~~~~~~~~L~~la~~-L~v~~~--- 211 (252)
T d2d5ra1 136 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQ-LELERI--- 211 (252)
T ss_dssp SSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHH-HTCCCC---
T ss_pred hhcCCCcEEEecchhHHHHHHHHHcCCCCCCCHHHHHHHHHHHCchHhhHHHHHhhccCCCchHHHHHHH-cCCCCC---
Confidence 346889999999999997765543 3 21 135889997777665545689998876 454311
Q ss_pred ccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHH
Q psy7894 381 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 417 (1006)
Q Consensus 381 q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~ 417 (1006)
.+ .+=|+.|+..+..+|-.|++.+.
T Consensus 212 -------g~-----~H~AG~DsllT~~~F~~l~~~~~ 236 (252)
T d2d5ra1 212 -------GP-----QHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp -------SS-----TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred -------CC-----CcchhHHHHHHHHHHHHHHHHHh
Confidence 01 12388999999999999988765
No 29
>d1d8ba_ a.60.8.1 (A:) HRDC domain from RecQ helicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=58.19 E-value=14 Score=30.69 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhh
Q psy7894 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525 (1006)
Q Consensus 470 lr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~ 525 (1006)
+..|-+.--.+.-+-+-|.+-.|||..|-.||..+|.+-+++..+.|.....-|+|
T Consensus 9 yerlr~~~~~~gnRm~ppv~~~mpd~~ikkiA~~LP~tedeFi~l~g~~~~~~rky 64 (81)
T d1d8ba_ 9 YERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRF 64 (81)
T ss_dssp HHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHG
T ss_pred HHHHHHHHHhhhcccCCchhccCcHHHHHHHHHhcCcchhHHhhhcccccchhHHH
Confidence 33444444566778899999999999999999999999999999988888777765
No 30
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]}
Probab=33.15 E-value=1.4e+02 Score=25.42 Aligned_cols=123 Identities=9% Similarity=0.233 Sum_probs=75.4
Q ss_pred HHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcCCCCCccccCCccchhhh
Q psy7894 478 DRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKK 557 (1006)
Q Consensus 478 D~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p~~~~i~~~~ps~~gir~ 557 (1006)
..+|++.+- .+|-+.|.|+.|...--.....++.-+|.....++.... ......+ ...+...
T Consensus 15 ~~~A~~~~h--~~v~~eHlL~all~~~~~~~~~iL~~~g~d~~~~~~~~~-------~~l~~~p---------~~~~~~~ 76 (139)
T d1khya_ 15 QSLALGHDN--QFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDIN-------QALNRLP---------QVEGTGG 76 (139)
T ss_dssp HHHHHHTTC--SSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHH-------HHHTTSC---------CC-----
T ss_pred HHHHHHcCC--CcccHHHHHHHHHhCcccHHHHHHHHcCCcHHHHHHHHH-------HHhhccc---------cccCccc
Confidence 345555554 499999999999986555566777666665554443322 2221111 1010000
Q ss_pred hhcccCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhH
Q psy7894 558 KQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 633 (1006)
Q Consensus 558 ~q~q~~~pP~ll~~~Qlavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g 633 (1006)
.+ .+++ .+..+..+-...|+..+ ..||-+.+.|+.|.+ .+.....++.-.|+.+..++...
T Consensus 77 ------~~--~~s~----~~~~vl~~A~~~a~~~~--d~~I~~ehlLlall~-~~~~~~~~L~~~gi~~~~l~~~i 137 (139)
T d1khya_ 77 ------DV--QPSQ----DLVRVLNLCDKLAQKRG--DNFISSELFVLAALE-SRGTLADILKAAGATTANITQAI 137 (139)
T ss_dssp ----------CBCH----HHHHHHHHHHHHHHHHT--CSSBCHHHHHHHHHT-SCHHHHHHHHHTTCCHHHHHHHH
T ss_pred ------cc--cccH----HHHHHHHHHHHHHHHcC--CCeecHHHHHHHHHc-CCcHHHHHHHHcCCCHHHHHHHh
Confidence 01 1122 46666677777888776 579999999999996 45456677777788887777654
No 31
>d1d8ba_ a.60.8.1 (A:) HRDC domain from RecQ helicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.53 E-value=1.1e+02 Score=25.12 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhh
Q psy7894 575 YALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632 (1006)
Q Consensus 575 avlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~ 632 (1006)
..+.+|.+---.+..+...|.+--||+..|..||..+|.+-++...+.|-....-|+|
T Consensus 7 ~ayerlr~~~~~~gnRm~ppv~~~mpd~~ikkiA~~LP~tedeFi~l~g~~~~~~rky 64 (81)
T d1d8ba_ 7 MTYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRF 64 (81)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHG
T ss_pred HHHHHHHHHHHhhhcccCCchhccCcHHHHHHHHHhcCcchhHHhhhcccccchhHHH
Confidence 4567777777788889999999999999999999999999999999999998888877
No 32
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}
Probab=26.17 E-value=38 Score=34.52 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=60.6
Q ss_pred HHHHHHHH--cCCCceeeecch-hhHHHHHHHHhC---------------------------------CccCeeechHhH
Q psy7894 310 LEVLNEVL--TDKNIVKVFHGA-DSDIKWLQKDFG---------------------------------LYVVGMFDTHQA 353 (1006)
Q Consensus 310 L~~L~elL--edp~IvKV~Hga-k~Dl~~L~rd~G---------------------------------I~~~nlFDTqlA 353 (1006)
+..+..++ .||.|+ +|||. .+|+.-|..+.. +.....+|....
T Consensus 194 L~~F~~~~~~~dPDii-~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 272 (372)
T d1noya_ 194 LMEYINLWEQKRPAIF-TGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDL 272 (372)
T ss_dssp HHHHHHHHHHSCCSEE-ECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHHH
T ss_pred HHHHHHHHHHcCCCEE-EEEccCCcchHHHHHHHHHhccccchhhhhhcccccceeeecccccceeeeeccceEEEeehh
Confidence 44444444 578876 78886 678877654320 001234565544
Q ss_pred HHhCC---CCCccHHHHHHHHcCCCCCcc-cccccCCCCCCChHHHHHHHhchhHHHHHHHHH
Q psy7894 354 CKFLP---MPRQSLAYLLKHYCDVDSDKT-FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412 (1006)
Q Consensus 354 AyLLg---~~~~SLa~Lve~yLgv~LdK~-~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L 412 (1006)
..... ..+++|..++..++|..-..- ....+|-... ....+.|...||..++.|.+.|
T Consensus 273 ~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~~~l~~~~~~d-~~~l~~Yni~D~~L~~~L~~kl 334 (372)
T d1noya_ 273 YKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETN-HQRYISYNIIDVESVQAIDKIR 334 (372)
T ss_dssp HHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred heecccccchhhhhhhheeeccccCCCCcchhHHHHHHhC-hhHhheecHHHHHHHHHHHHHH
Confidence 43322 346899999999999653221 1122221111 1447999999999999998875
Done!