Your job contains 1 sequence.
>psy7894
MSDTNQEIPKSDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYIS
GVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK
TPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKV
DNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQ
ALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYI
VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP
RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA
HGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRI
ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS
LTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLP
NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQPSLD
GMKKKKQQQQVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFF
EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK
TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE
ESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDF
SKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRKPFLFLWLSQNILQLFIWELPILVK
GKYFQVVNIESAHNLPQFCGGGGTYCPRAHGQVHFNQSTILFVWLP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7894
(1006 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038269 - symbol:Rrp6 "Rrp6" species:7227 "Drosoph... 1161 9.5e-120 2
UNIPROTKB|Q01780 - symbol:EXOSC10 "Exosome component 10" ... 928 1.2e-114 3
UNIPROTKB|F1PI20 - symbol:EXOSC10 "Uncharacterized protei... 931 4.0e-114 3
UNIPROTKB|E1C525 - symbol:EXOSC10 "Uncharacterized protei... 936 8.2e-114 3
UNIPROTKB|D4A1X2 - symbol:LOC100366273 "Protein LOC100366... 908 4.0e-112 3
UNIPROTKB|E1BMZ5 - symbol:EXOSC10 "Uncharacterized protei... 920 8.2e-112 3
UNIPROTKB|B4DKG8 - symbol:EXOSC10 "Exosome component 10" ... 928 9.0e-111 2
UNIPROTKB|F1RHR9 - symbol:EXOSC10 "Uncharacterized protei... 927 1.5e-110 2
RGD|2323986 - symbol:LOC100366273 "rCG30986-like" species... 908 3.1e-110 3
UNIPROTKB|A7E323 - symbol:EXOSC10 "Uncharacterized protei... 932 1.7e-109 2
MGI|MGI:1355322 - symbol:Exosc10 "exosome component 10" s... 914 3.4e-109 2
ZFIN|ZDB-GENE-040426-781 - symbol:exosc10 "exosome compon... 964 7.6e-99 2
POMBASE|SPAC1F3.01 - symbol:rrp6 "exosome 3'-5' exoribonu... 801 8.4e-85 3
DICTYBASE|DDB_G0271572 - symbol:exosc10 "exosome componen... 660 1.5e-82 3
WB|WBGene00000796 - symbol:crn-3 species:6239 "Caenorhabd... 786 1.7e-82 2
ASPGD|ASPL0000094155 - symbol:AN11773 species:162425 "Eme... 815 1.8e-80 1
ASPGD|ASPL0000095540 - symbol:AN11774 species:162425 "Eme... 815 1.8e-80 1
SGD|S000005527 - symbol:RRP6 "Nuclear exosome exonuclease... 772 1.1e-76 1
UNIPROTKB|Q95Z10 - symbol:RRP6 "Rrp6p homologue" species:... 652 1.6e-74 3
CGD|CAL0000608 - symbol:RRP6 species:5476 "Candida albica... 704 9.7e-72 2
UNIPROTKB|Q59MB4 - symbol:RRP6 "Likely nuclear exosome co... 704 9.7e-72 2
TAIR|locus:504955936 - symbol:AT2G32415 species:3702 "Ara... 532 3.0e-48 1
TIGR_CMR|GSU_0443 - symbol:GSU_0443 "ribonuclease D, puta... 272 2.2e-21 1
TIGR_CMR|CPS_3518 - symbol:CPS_3518 "ribonuclease D" spec... 260 9.0e-20 1
TIGR_CMR|SPO_2167 - symbol:SPO_2167 "ribonuclease D" spec... 217 1.2e-14 1
UNIPROTKB|P09155 - symbol:rnd "RNase D" species:83333 "Es... 214 2.4e-14 1
TIGR_CMR|APH_0137 - symbol:APH_0137 "putative ribonucleas... 208 5.9e-14 2
TIGR_CMR|ECH_0300 - symbol:ECH_0300 "putative ribonucleas... 209 1.0e-13 1
TIGR_CMR|SO_2580 - symbol:SO_2580 "ribonuclease D" specie... 187 2.5e-11 1
UNIPROTKB|Q9KQL4 - symbol:rnd "Ribonuclease D" species:24... 173 1.0e-09 1
TIGR_CMR|VC_1984 - symbol:VC_1984 "ribonuclease D" specie... 173 1.0e-09 1
UNIPROTKB|O07183 - symbol:MT2755 "CONSERVED HYPOTHETICAL ... 171 2.4e-09 1
TIGR_CMR|SPO_0083 - symbol:SPO_0083 "exonuclease, putativ... 133 3.0e-06 1
GENEDB_PFALCIPARUM|MAL8P1.35 - symbol:MAL8P1.35 "exonucle... 136 1.4e-05 1
UNIPROTKB|Q8IB75 - symbol:MAL8P1.35 "Exonuclease, putativ... 136 1.4e-05 1
UNIPROTKB|E1BWV5 - symbol:EXD3 "Uncharacterized protein" ... 110 4.3e-05 2
TIGR_CMR|ECH_1011 - symbol:ECH_1011 "3'-5' exonuclease fa... 123 5.6e-05 1
TIGR_CMR|APH_1098 - symbol:APH_1098 "3''-5'' exonuclease ... 122 7.4e-05 1
TIGR_CMR|SO_1153 - symbol:SO_1153 "exonuclease, putative"... 124 0.00015 1
>FB|FBgn0038269 [details] [associations]
symbol:Rrp6 "Rrp6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0071027 "nuclear RNA surveillance" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 EMBL:AE014297
GO:GO:0005730 GO:GO:0000166 GO:GO:0006378 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0010468 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0005652 GO:GO:0000176 KO:K12591 GeneTree:ENSGT00390000015408
GO:GO:0071027 RefSeq:NP_001097795.1 UniGene:Dm.7279
ProteinModelPortal:Q9VFF3 SMR:Q9VFF3 IntAct:Q9VFF3 STRING:Q9VFF3
PRIDE:Q9VFF3 EnsemblMetazoa:FBtr0113235 GeneID:41798
KEGG:dme:Dmel_CG7292 UCSC:CG7292-RB CTD:41798 FlyBase:FBgn0038269
InParanoid:Q9VFF3 OMA:FERITTN OrthoDB:EOG4THT8C PhylomeDB:Q9VFF3
GenomeRNAi:41798 NextBio:825622 ArrayExpress:Q9VFF3 Bgee:Q9VFF3
Uniprot:Q9VFF3
Length = 900
Score = 1161 (413.8 bits), Expect = 9.5e-120, Sum P(2) = 9.5e-120
Identities = 241/586 (41%), Positives = 359/586 (61%)
Query: 3 DTNQEIPKSDEA-NKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISG 61
+ +E ++D+ K S+ + +K+ + TK A +FP +L ++ P Y
Sbjct: 11 EAKEESAQADQPPKKSASEDVEAFTNKGFKNAIAATKAANAFPQGTARALYLSYPGYARV 70
Query: 62 VAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK- 120
+ + +V+ L+ ++L +++I + K E Q +++ E ND L E I T +D+ G +
Sbjct: 71 MEDLTQRVVALIGNVLHSKDIKGDIKKRQPEEQFEMVQECNDVLFERITTNLDIKGGLRR 130
Query: 121 -TPSVLPSQPKIVKESWN-KNAKAS---------NVWQEVHDNKKKSANWFMLNKGAVEI 169
T V+ +Q ++ S + + A AS W ++S L A I
Sbjct: 131 NTQQVVEAQVDVMSSSTSIEPAVASPQTQGTPKAGSWNRTTGTPQRSMVSARLFT-AKNI 189
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYV 227
RPQ QF+ VDNS + F P+LKEKPN+LKPLA+L E DA ++S+ HPYE+EL +
Sbjct: 190 VRPQTQFREPVDNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNVQSYLHPYEFELLKFQ 249
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
P E+ + ++P +++T LM++ E++ Q + EL+Q +IAID+E+H+YR++ G T
Sbjct: 250 PPEEQFQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGIT 309
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CL+Q+STR KDYI DTL LR+D+ +LN VLTD +K+ HGAD DI+WLQ+D LY+V M
Sbjct: 310 CLVQMSTRSKDYIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNM 369
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDTH+A K L M R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+Y
Sbjct: 370 FDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIY 429
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQ 466
VY M DL H + L+ S + S ++CK +Y KP E ++++ R + +N+Q
Sbjct: 430 VYGRMTNDL-LQQHAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQ 488
Query: 467 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ +
Sbjct: 489 LYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQL 548
Query: 527 LDIHAIILKARLQSLTKPV----EKLQPSLDGMKKKQQQQVSPPHD 568
+H I+LKAR Q L KP+ Q +L K ++ PHD
Sbjct: 549 HTLHQIVLKARDQPLVKPILEAHSSTQAALPPSTKDFSSKLYCPHD 594
Score = 319 (117.4 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 78/232 (33%), Positives = 123/232 (53%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+N+Q YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V
Sbjct: 485 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLV 544
Query: 630 KEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMXXXXXXXXVSP---PHDSMDCLNYKG- 685
++ + +H I+LKAR QPL KP+ + S S PHD +
Sbjct: 545 RQQLHTLHQIVLKARDQPLVKPILEAHSSTQAALPPSTKDFSSKLYCPHDFSQLEEIRDD 604
Query: 686 LPPVFPNNIICA----PSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQK---IKLKT 738
LP + N P+ ++ DP A FE + K + Q+ ++ ++
Sbjct: 605 LPTLLKRNSTTGKLEVPNKEEVAKVDPT--LAAPAMALFEKQSKPTQEEEQRWAHLRKES 662
Query: 739 SRFETPYQRFLKSKEYAKAIQ-EKVDKENAEQKKIDALTPQVKTEPEENVKI 789
PY+R+L ++ +++ +E +E +K L P T E+N+K+
Sbjct: 663 QTMRMPYKRYLAILPLMVQLKADQLARERSELQKRQ-LCPAAPTV-EQNIKL 712
Score = 40 (19.1 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 517 PVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDS 569
P Q K+ + + A++ + L + VEKL+ +L+ +++ Q + H S
Sbjct: 251 PEEQFQKQKPV-LPALMAETELM-VVDTVEKLKQALEELRQAPQIAIDVEHHS 301
Score = 38 (18.4 bits), Expect = 9.5e-120, Sum P(2) = 9.5e-120
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 764 KENAEQKKIDALTPQVKTEPEENVKITQEP 793
KE ++K A VKT+PE+ ++ P
Sbjct: 730 KEQLKRKHPQA---NVKTDPEQQPTASKRP 756
>UNIPROTKB|Q01780 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IMP] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0071048 "nuclear retention of unspliced
pre-mRNA at the site of transcription" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 EMBL:CH471130
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
EMBL:AJ300188 GO:GO:0008408 GO:GO:0035327 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460 GO:GO:0000176
GO:GO:0071034 EMBL:X66113 EMBL:L01457 EMBL:AL109811 EMBL:BC039901
EMBL:BC073788 IPI:IPI00009464 IPI:IPI00220336 PIR:A43920 PIR:JH0796
RefSeq:NP_001001998.1 RefSeq:NP_002676.1 UniGene:Hs.632368 PDB:2CPR
PDB:3SAF PDB:3SAG PDB:3SAH PDBsum:2CPR PDBsum:3SAF PDBsum:3SAG
PDBsum:3SAH ProteinModelPortal:Q01780 SMR:Q01780 IntAct:Q01780
MINT:MINT-1143843 STRING:Q01780 PhosphoSite:Q01780 DMDM:8928564
SWISS-2DPAGE:Q01780 PaxDb:Q01780 PRIDE:Q01780 DNASU:5394
Ensembl:ENST00000304457 Ensembl:ENST00000376936 GeneID:5394
KEGG:hsa:5394 UCSC:uc001asa.3 UCSC:uc001asb.3 CTD:5394
GeneCards:GC01M011126 HGNC:HGNC:9138 HPA:HPA028470 HPA:HPA028484
MIM:605960 neXtProt:NX_Q01780 PharmGKB:PA33464 eggNOG:COG0349
HOGENOM:HOG000001579 HOVERGEN:HBG051524 InParanoid:Q01780 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P PhylomeDB:Q01780 ChiTaRS:EXOSC10
EvolutionaryTrace:Q01780 GenomeRNAi:5394 NextBio:20912
ArrayExpress:Q01780 Bgee:Q01780 CleanEx:HS_EXOSC10
Genevestigator:Q01780 GermOnline:ENSG00000171824 GO:GO:0004532
GO:GO:0071048 Uniprot:Q01780
Length = 885
Score = 928 (331.7 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 171/332 (51%), Positives = 238/332 (71%)
Query: 213 ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A
Sbjct: 252 DMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFA 311
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSD
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSD 371
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE
Sbjct: 372 IEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPE 431
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
+ YAR DTHYLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y
Sbjct: 432 EMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESY 491
Query: 453 MNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI
Sbjct: 492 LELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGI 551
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
ACCNPVP V++ + ++H +I +AR L K
Sbjct: 552 IACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 241 (89.9 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 48/113 (42%), Positives = 75/113 (66%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 478 LKKFIKPIFTDESYLE-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 530
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTK 650
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 531 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 186 (70.5 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 74/231 (32%), Positives = 110/231 (47%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L +AND +LE + +D +G VLP+ PK
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
V SWN+ KA+ + K KS + +L+ A I RPQL+F+ K+DNS F PK
Sbjct: 152 VVSSWNR--KAAE-----YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE--DFLKCEEPKQ 240
+ KPNA KPL L K E P + DL VP DF+ + +Q
Sbjct: 202 IFIKPNAQKPLPQALSK----ERRERPQDRPEDLDVPPALADFIHQQRTQQ 248
Score = 51 (23.0 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 22/98 (22%), Positives = 52/98 (53%)
Query: 704 SSYDPQDKKIAQIGLFFE-DKMKIGSNKYQKIKLK----TSRFETPYQRFLKSKEYAKAI 758
+ +DP K I +I ++ ++++ + + +K K T+ E + + E A ++
Sbjct: 709 AKFDPSTK-IYEISNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISV 767
Query: 759 QEKVDKENAEQKKIDALT-PQVKTEPEEN--VKITQEP 793
+++V ENA +K+ A + P+ + +E +KI+++P
Sbjct: 768 RQQVVLENAAKKRERATSDPRTTEQKQEKKRLKISKKP 805
Score = 39 (18.8 bits), Expect = 2.2e-113, Sum P(3) = 2.2e-113
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 549 QPSLDGMKKKQQQQVSPPHDSNN-QQKYALRELYKWRDRIARDKDESTGY 597
Q L+ KK+++ S P + Q+K L+ K +D +K E T Y
Sbjct: 770 QVVLENAAKKRERATSDPRTTEQKQEKKRLKISKKPKDPEPPEK-EFTPY 818
Score = 38 (18.4 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 276 EYHNYRSYQGYT--C------LMQISTRDKDY------IVDTLKLREDLEVLNEVLTDKN 321
EY YRS+ G+ C L+Q +R Y I D K+ E LE ++L D N
Sbjct: 59 EYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTE-LEDKFDLLVDAN 117
Query: 322 IV 323
V
Sbjct: 118 DV 119
>UNIPROTKB|F1PI20 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 OMA:GNKSMSF
GeneTree:ENSGT00390000015408 EMBL:AAEX03001937
Ensembl:ENSCAFT00000026485 Uniprot:F1PI20
Length = 908
Score = 931 (332.8 bits), Expect = 4.0e-114, Sum P(3) = 4.0e-114
Identities = 180/365 (49%), Positives = 251/365 (68%)
Query: 213 ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ F HPY+YELD + P E L+ +P+ P+ +TP ++ +++ +L +L QE A
Sbjct: 274 DMFAHPYQYELDHFTPPESVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTCQEFA 333
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRS+ G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSD
Sbjct: 334 VDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPTIVKVFHGADSD 393
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE
Sbjct: 394 IEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPE 453
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
+ YAR DTHYLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y
Sbjct: 454 EMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQLQVVWQRSRDICLKKFVKPLFTDESY 513
Query: 453 MNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI
Sbjct: 514 LELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGI 573
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKP-----VEKLQPSLDGMKKKQQQQVSPP 566
ACCNPVP V++ + ++H +I +AR L K V+K P L G ++ + + P
Sbjct: 574 IACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVASGVKKSGP-LPG-PERLENVLFGP 631
Query: 567 HDSNN 571
HD ++
Sbjct: 632 HDCSH 636
Score = 243 (90.6 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 79/275 (28%), Positives = 133/275 (48%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 500 LKKFVKPLFTDESYLE-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 552
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKP-----V 652
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K V
Sbjct: 553 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVASGV 612
Query: 653 EKLQPSLDGMXXXXXXXXVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKK 712
+K P L G + PHD + G P + N + A L +++
Sbjct: 613 KKSGP-LPGPERLENV--LFGPHDCSHASS-DGYPMMPSNGPVPAQKQASLFPERREEEA 668
Query: 713 IAQIG---------LFFEDKMKIGSNKYQKIKLKTSR-----FETPYQRFLKSKEYAKAI 758
+ G LF E + + K ++ FE P++ FL S E+ +
Sbjct: 669 LPDTGCLIATAVITLFNEPSAEESGKSPLTVAQKKAQNIMESFENPFKMFLPSLEHRAHV 728
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEP 793
+ + + KI ++ + K + V++ +EP
Sbjct: 729 SQAAKFDPSS--KIYEISNRWKLASQ--VQVHKEP 759
Score = 181 (68.8 bits), Expect = 4.0e-114, Sum P(3) = 4.0e-114
Identities = 72/231 (31%), Positives = 108/231 (46%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 55 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLHCMSRVMQYHG 114
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L + ND +LE + +D +G VLP+ PK
Sbjct: 115 CRSNI-KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKT 173
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ KA + K KS + +L+ A I RPQL+F+ K+DNS F PK
Sbjct: 174 IVSSWNR--KAGE-----YSKKTKSETFRLLH--AKNIVRPQLKFREKIDNSNTP-FLPK 223
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE--DFLKCEEPKQ 240
+ KPNA KPL L K E P + DL VP DF+ + +Q
Sbjct: 224 IFIKPNAQKPLPQALSK----ERRERPQDRPEDLDVPPALADFIHQQRTQQ 270
Score = 48 (22.0 bits), Expect = 4.0e-114, Sum P(3) = 4.0e-114
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 549 QPSLDGMKKKQQQQVSPPHDSNN-QQKYALRELYKWRDRIARDKD 592
Q +L+ KK+++ S P + Q+K L+ K +D +KD
Sbjct: 794 QAALESAAKKRERTTSDPRTTEQKQEKKRLKTAKKPKDPDPPEKD 838
>UNIPROTKB|E1C525 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591
OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:AADN02040751 IPI:IPI00588624
RefSeq:NP_001012748.1 UniGene:Gga.2286 ProteinModelPortal:E1C525
Ensembl:ENSGALT00000004879 GeneID:419454 KEGG:gga:419454
NextBio:20822508 Uniprot:E1C525
Length = 910
Score = 936 (334.5 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 179/363 (49%), Positives = 246/363 (67%)
Query: 213 ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ F HPY+YEL+ + P + LK EP+ P+ +TP IT +++ +L +L +E A
Sbjct: 270 DMFAHPYQYELEHFSPPDGVLKKPEPQMYRPIKETPCHFITTLDELVELNEKLMNCKEFA 329
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE TD IVKV HGADSD
Sbjct: 330 LDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMSILNETFTDPAIVKVLHGADSD 389
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
++WLQKDFGLY+V MFDTHQA + L + + SL +LLK YC VD+DK +QL DWR RPLPE
Sbjct: 390 VEWLQKDFGLYLVNMFDTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPE 449
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
IQYAR DTHYLLY+YD M+ L + + + + SR+IC KY KP+F++E Y
Sbjct: 450 EMIQYARDDTHYLLYIYDKMREALWERGNEQPTQLKVVWQRSRDICLKKYIKPLFSDESY 509
Query: 453 MNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++R LN QQ A R L+ WRD+ AR +DES GYVLPNHMLL++A+ +P++ QGI
Sbjct: 510 LELYRRQKKHLNTQQLAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELPKEPQGI 569
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKP----VEKLQPSLDGMKKKQQQQVSPPH 567
ACCNPVP V++ + ++H +I +AR L K K + SL ++ + P H
Sbjct: 570 IACCNPVPPLVRQQINELHLLIQQAREMPLLKSEIALTVKKRTSLSNPERLENTFFGP-H 628
Query: 568 DSN 570
DS+
Sbjct: 629 DSS 631
Score = 252 (93.8 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 69/208 (33%), Positives = 111/208 (53%)
Query: 453 MNIFRSH--ALLNNQQKYALRELYKWRDRIARDKDESTG----YVLPNHMLLQMAQSIPR 506
+N+F +H A L N K++L L K + DK LP M+ Q A+
Sbjct: 402 VNMFDTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMI-QYARDDTH 460
Query: 507 DIQGIF-ACCNPVPQTVKEHVLDIHAIILKAR---LQSLTKPVEKLQPSLDGMKKKQQQQ 562
+ I+ + + E + + ++R L+ KP+ + L+ + ++Q++
Sbjct: 461 YLLYIYDKMREALWERGNEQPTQLKVVWQRSRDICLKKYIKPLFSDESYLE-LYRRQKKH 519
Query: 563 VSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 622
+ N QQ A R L+ WRD+ AR +DES GYVLPNHMLL++A+ +P++ QGI ACC
Sbjct: 520 L------NTQQLAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELPKEPQGIIACC 573
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTK 650
NPVP V++ + ++H +I +AR PL K
Sbjct: 574 NPVPPLVRQQINELHLLIQQAREMPLLK 601
Score = 183 (69.5 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 68/228 (29%), Positives = 107/228 (46%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQN 81
D V++A ++V TK + P E + P + + +++ + +++
Sbjct: 52 DAFVKHALGTMVATTKASSGLPQPGDEYDFYRSFPGFRAYCEAQGQRLLHCMSRVMQYHG 111
Query: 82 ISKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKIV 132
M SK+ LE + D+L ++ND +LE + +D AG VLP+ P+ +
Sbjct: 112 CRSHMRDHSKVTELEDKFDMLVDSNDIILERVGILLDEAAGVNKNQQPVLPAGLQVPQTI 171
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A E H + KS + +L+ A I RPQL+F+ K+DNS F PKL
Sbjct: 172 VSSWNRKAG------EYH-KRTKSETFRLLH--AKNISRPQLKFREKIDNSNTP-FVPKL 221
Query: 193 KEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQ 240
KPNALKPL L K E P + LD+ DF+ + +Q
Sbjct: 222 FIKPNALKPLPEALTK-SGRERKERPED--LDVPAALADFIHQQRTQQ 266
Score = 49 (22.3 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 32/117 (27%), Positives = 48/117 (41%)
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC-----NP--VPQTVK-EHVLDIHAIIL 534
DKDE VL + AQ I + F NP V Q+ K + I+ I
Sbjct: 690 DKDEGNEKVLTTAQ--KKAQRIMESFENPFRMYLPSEQNPAYVSQSAKFDPSSKIYEISN 747
Query: 535 KARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDK 591
+ +L S T+ V+K S D KKK QQ + + K A + R + +++
Sbjct: 748 RWKLMSKTQ-VQK--ESRDEAKKKAAQQSAARDQAQKAYKEATENIVSVRQQAMQEQ 801
Score = 38 (18.4 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKE 753
E K+ + +K + FE P++ +L S++
Sbjct: 693 EGNEKVLTTAQKKAQRIMESFENPFRMYLPSEQ 725
>UNIPROTKB|D4A1X2 [details] [associations]
symbol:LOC100366273 "Protein LOC100366273" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
RGD:2323986 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF
OrthoDB:EOG4X6C7P GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 IPI:IPI00359630 PRIDE:D4A1X2
Ensembl:ENSRNOT00000014629 ArrayExpress:D4A1X2 Uniprot:D4A1X2
Length = 884
Score = 908 (324.7 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 180/388 (46%), Positives = 256/388 (65%)
Query: 190 PKLKEKPNALKPLAILLEKYDAIES--FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+ + P AL I ++ +E F HPY+YELD + P L+ +P+ P+ +T
Sbjct: 228 PEDLDVPPALADF-IHQQRAQQVEQDVFAHPYQYELDHFTPPPSVLQRPQPQLYRPVEET 286
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P +++ +++ +L +L QE A+DLE+H+YRS+ G TCLMQISTR +D IVDTL+LR
Sbjct: 287 PCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTED-IVDTLELR 345
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +L
Sbjct: 346 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHL 405
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
L+ YC V+S+K +QL DWR RPLPE + YAR DTHYLLY+YD M+L+L + + +
Sbjct: 406 LRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQL 465
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDE 486
+ SR+IC K+ KP+F +E Y+ ++R LN+QQ A + L+ WRD+ AR +DE
Sbjct: 466 QVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARREDE 525
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
S GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 526 SYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSET 585
Query: 547 KLQPSLDG---MKKKQQQQVSPPHDSNN 571
G ++ + + PHD ++
Sbjct: 586 AAGVKKSGPLPSAERLENDLFGPHDCSH 613
Score = 243 (90.6 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 48/113 (42%), Positives = 76/113 (67%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N+QQ A + L+ WRD+ AR +DES GY
Sbjct: 477 LKKFVKPIFTDESYLE-LYRKQKKHL------NSQQLTAFQLLFAWRDKTARREDESYGY 529
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTK 650
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 530 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 582
Score = 178 (67.7 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 73/231 (31%), Positives = 105/231 (45%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQVGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L + ND +LE + +D +G VLP+ PK
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKHQQPVLPAGLQVPKT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ KA KK A F L A I RPQL+F+ K+DNS F PK
Sbjct: 152 IVSSWNR--KAGEY------GKKAKAETFRLLH-AKNILRPQLRFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE--DFLKCEEPKQ 240
+ KPNA KPL L K E P + DL VP DF+ + +Q
Sbjct: 202 IFVKPNARKPLPQALSK----ERRERPQDRPEDLDVPPALADFIHQQRAQQ 248
Score = 55 (24.4 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 20/91 (21%), Positives = 45/91 (49%)
Query: 711 KKIAQIGLFFED--KMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQ-EKVDKENA 767
KK I FE+ +M + S + + + ++F+ + + S + A Q +K KE A
Sbjct: 678 KKAQSIMESFENPFRMFLPSLENKAHISQAAKFDPSSKIYEISNRWKLASQVQKEPKEAA 737
Query: 768 EQKKIDALTPQVKTEPEENVKITQEPVVLKQ 798
++K + + +T+ E + ++P+ ++Q
Sbjct: 738 KKKVAEQTAAREETKEESTAAVLEQPIPVRQ 768
Score = 37 (18.1 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 535 KARLQSLTKPVEKLQPSLDGMKKKQQQQ 562
+A L++ TK E+ L +++KQ+++
Sbjct: 769 QAALENATKKRERATSDLRTIEQKQEKK 796
>UNIPROTKB|E1BMZ5 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 IPI:IPI00698678
Ensembl:ENSBTAT00000003354 ArrayExpress:E1BMZ5 Uniprot:E1BMZ5
Length = 890
Score = 920 (328.9 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 178/360 (49%), Positives = 248/360 (68%)
Query: 190 PKLKEKPNALKPLAILLEKYDAIES--FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+ + P AL L I ++ +E F HPY+YELD + P + L+ EP+ P+ +T
Sbjct: 228 PEDLDVPPALADL-IHQQRTQQVEQDMFAHPYQYELDHFTPPDSVLQKPEPQLYRPVGET 286
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P ++ +++ +L +L + QE A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR
Sbjct: 287 PCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELR 346
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +L
Sbjct: 347 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHL 406
Query: 368 LKHYCDVDSDKTFQLFDWR---HRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
LK YC V+S+K +QL DWR RPLPE + YAR DTHYLLY+YD M+L+L + +
Sbjct: 407 LKLYCSVESNKQYQLADWRIRNPRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQP 466
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARD 483
+ + SR+IC K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR
Sbjct: 467 TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARR 526
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
+DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 527 EDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 586
Score = 243 (90.6 bits), Expect = 5.1e-29, Sum P(2) = 5.1e-29
Identities = 83/275 (30%), Positives = 131/275 (47%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 481 LKKFIKPIFTDESYLE-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 533
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQP 657
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 534 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGV 593
Query: 658 SLDGMXXX--XXXXXVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKI-- 713
G + PHD + G P V + + L S ++ +
Sbjct: 594 RKSGPLPNPERLENVLFGPHDCSHTPS-DGYPLVPTDGPVPMQKQEGLLSAQEDEETLPD 652
Query: 714 -------AQIGLFFEDKMKIGSNK------YQKIKLKTSRFETPYQRFLKSKEYAKAIQE 760
A + LF E + G+ K +K + FE P++ FL S E+ I +
Sbjct: 653 IRCLVATAVVTLFNEPSAE-GNEKSPLTVAQKKAQNIMESFENPFRMFLPSVEHRAHISQ 711
Query: 761 --KVDK-----ENAEQKKIDALTPQVKTEPEENVK 788
K D E + + K+ A QV+ EP+E K
Sbjct: 712 SAKFDPSSKIYEISNRWKL-ASQVQVQREPKETAK 745
Score = 170 (64.9 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 67/217 (30%), Positives = 102/217 (47%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A ++V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L + ND +LE + +D +G VLP+ P+
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPQT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ KA + K KS + +L+ A I RPQL+F+ K+DNS F PK
Sbjct: 152 IVSSWNR--KAGE-----YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
+ KPNA KPL L K E P + DL VP
Sbjct: 202 IFIKPNAQKPLPQALSK----ERRERPQDRPEDLDVP 234
Score = 48 (22.0 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 13/59 (22%), Positives = 33/59 (55%)
Query: 738 TSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALT-PQVKTEPEEN--VKITQEP 793
T+ + + + + E A +++++ ENA +K+ A + P+ + +E +KI+++P
Sbjct: 752 TAARDQAQEEYRAAAEQAVSVRQQAALENAAKKRERATSDPRTTEQKQEKKRLKISKKP 810
Score = 45 (20.9 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 549 QPSLDGMKKKQQQQVSPPHDSNN-QQKYALRELYKWRDRIARDKD 592
Q +L+ KK+++ S P + Q+K L+ K +D +KD
Sbjct: 775 QAALENAAKKRERATSDPRTTEQKQEKKRLKISKKPKDPDPPEKD 819
Score = 39 (18.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 409 YDCMKLDLSAAAHGKQNLVLSTFTNSRNI 437
YD KLD A A ++ S F S+ +
Sbjct: 823 YDYSKLDFKAFAGNSKSKPSSQFDPSKQL 851
>UNIPROTKB|B4DKG8 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 EMBL:AL109811 UniGene:Hs.632368 HGNC:HGNC:9138
HOVERGEN:HBG051524 ChiTaRS:EXOSC10 EMBL:AK296559 IPI:IPI01010048
SMR:B4DKG8 STRING:B4DKG8 Ensembl:ENST00000544779 Uniprot:B4DKG8
Length = 679
Score = 928 (331.7 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 171/332 (51%), Positives = 238/332 (71%)
Query: 213 ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A
Sbjct: 252 DMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFA 311
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSD
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSD 371
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE
Sbjct: 372 IEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPE 431
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
+ YAR DTHYLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y
Sbjct: 432 EMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESY 491
Query: 453 MNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI
Sbjct: 492 LELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGI 551
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
ACCNPVP V++ + ++H +I +AR L K
Sbjct: 552 IACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 241 (89.9 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 48/113 (42%), Positives = 75/113 (66%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 478 LKKFIKPIFTDESYLE-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 530
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTK 650
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 531 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 186 (70.5 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 74/231 (32%), Positives = 110/231 (47%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L +AND +LE + +D +G VLP+ PK
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
V SWN+ KA+ + K KS + +L+ A I RPQL+F+ K+DNS F PK
Sbjct: 152 VVSSWNR--KAAE-----YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE--DFLKCEEPKQ 240
+ KPNA KPL L K E P + DL VP DF+ + +Q
Sbjct: 202 IFIKPNAQKPLPQALSK----ERRERPQDRPEDLDVPPALADFIHQQRTQQ 248
Score = 38 (18.4 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 276 EYHNYRSYQGYT--C------LMQISTRDKDY------IVDTLKLREDLEVLNEVLTDKN 321
EY YRS+ G+ C L+Q +R Y I D K+ E LE ++L D N
Sbjct: 59 EYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTE-LEDKFDLLVDAN 117
Query: 322 IV 323
V
Sbjct: 118 DV 119
>UNIPROTKB|F1RHR9 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591 OMA:GNKSMSF
GO:GO:0004532 GO:GO:0071048 GeneTree:ENSGT00390000015408
EMBL:CU694468 RefSeq:XP_003127631.2 UniGene:Ssc.23524
Ensembl:ENSSSCT00000003785 GeneID:100511264 KEGG:ssc:100511264
Uniprot:F1RHR9
Length = 886
Score = 927 (331.4 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 172/332 (51%), Positives = 237/332 (71%)
Query: 213 ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ F HPY+YELD + P E L+ EP+ P+ +TP ++ +++ +L +L + QE A
Sbjct: 252 DMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFA 311
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSD
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSD 371
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC V+S+K +QL DWR RPLPE
Sbjct: 372 IEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPE 431
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
+ YAR DTHYLLY+YD M+L L + + + + SR+IC K+ KP+F +E Y
Sbjct: 432 EMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESY 491
Query: 453 MNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
++++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI
Sbjct: 492 LDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGI 551
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
ACCNPVP V++ + ++H +I +AR L K
Sbjct: 552 IACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 245 (91.3 bits), Expect = 8.1e-31, Sum P(2) = 8.1e-31
Identities = 49/113 (43%), Positives = 75/113 (66%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + LD + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 478 LKKFIKPIFTDESYLD-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 530
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTK 650
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 531 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 185 (70.2 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 73/231 (31%), Positives = 109/231 (47%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L + ND +LE + +D +G VLP+ PK
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ KA + K KS + +L+ A I RPQL+F+ K+DNS F PK
Sbjct: 152 IVSSWNR--KAGE-----YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE--DFLKCEEPKQ 240
+ KPNA KPL L K D E P + DL VP DF+ + +Q
Sbjct: 202 IFIKPNAQKPLPQALSK-DRRE---RPQDRPEDLDVPPALADFIHQQRTRQ 248
Score = 38 (18.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 276 EYHNYRSYQGYT--C------LMQISTRDKDY------IVDTLKLREDLEVLNEVLTDKN 321
EY YRS+ G+ C L+Q +R Y I D K+ E LE ++L D N
Sbjct: 59 EYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTE-LEDKFDLLVDTN 117
Query: 322 IV 323
V
Sbjct: 118 DV 119
>RGD|2323986 [details] [associations]
symbol:LOC100366273 "rCG30986-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 RGD:2323986 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 GeneTree:ENSGT00390000015408 IPI:IPI00211602
ProteinModelPortal:D4A2C3 Ensembl:ENSRNOT00000014593
ArrayExpress:D4A2C3 Uniprot:D4A2C3
Length = 859
Score = 908 (324.7 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 180/388 (46%), Positives = 256/388 (65%)
Query: 190 PKLKEKPNALKPLAILLEKYDAIES--FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+ + P AL I ++ +E F HPY+YELD + P L+ +P+ P+ +T
Sbjct: 228 PEDLDVPPALADF-IHQQRAQQVEQDVFAHPYQYELDHFTPPPSVLQRPQPQLYRPVEET 286
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P +++ +++ +L +L QE A+DLE+H+YRS+ G TCLMQISTR +D IVDTL+LR
Sbjct: 287 PCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTED-IVDTLELR 345
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +L
Sbjct: 346 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHL 405
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
L+ YC V+S+K +QL DWR RPLPE + YAR DTHYLLY+YD M+L+L + + +
Sbjct: 406 LRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQL 465
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDE 486
+ SR+IC K+ KP+F +E Y+ ++R LN+QQ A + L+ WRD+ AR +DE
Sbjct: 466 QVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARREDE 525
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVE 546
S GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 526 SYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSET 585
Query: 547 KLQPSLDG---MKKKQQQQVSPPHDSNN 571
G ++ + + PHD ++
Sbjct: 586 AAGVKKSGPLPSAERLENDLFGPHDCSH 613
Score = 262 (97.3 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 79/277 (28%), Positives = 136/277 (49%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N+QQ A + L+ WRD+ AR +DES GY
Sbjct: 477 LKKFVKPIFTDESYLE-LYRKQKKHL------NSQQLTAFQLLFAWRDKTARREDESYGY 529
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKP-----V 652
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K V
Sbjct: 530 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSETAAGV 589
Query: 653 EKLQP-----SLDGMXXXXXXXXVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYD 707
+K P L+ +PP D+ + G P+ + +S D
Sbjct: 590 KKSGPLPSAERLENDLFGPHDCSHAPP-DNYPVTSTDGTMPLQKQPSLFDEGKEE-TSVD 647
Query: 708 PQDK-KIAQIGLFFEDKMKIGSNKYQKIKLKTSR-----FETPYQRFLKSKEYAKAIQEK 761
+ A I LF E + + K ++ FE P++ + A +Q K
Sbjct: 648 ARCLLATAVITLFSEPSTEEAGKTPLTVAQKKAQSIMESFENPFRMISNRWKLASQVQ-K 706
Query: 762 VDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQ 798
KE A++K + + +T+ E + ++P+ ++Q
Sbjct: 707 EPKEAAKKKVAEQTAAREETKEESTAAVLEQPIPVRQ 743
Score = 178 (67.7 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 73/231 (31%), Positives = 105/231 (45%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQVGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L + ND +LE + +D +G VLP+ PK
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKHQQPVLPAGLQVPKT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ KA KK A F L A I RPQL+F+ K+DNS F PK
Sbjct: 152 IVSSWNR--KAGEY------GKKAKAETFRLLH-AKNILRPQLRFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE--DFLKCEEPKQ 240
+ KPNA KPL L K E P + DL VP DF+ + +Q
Sbjct: 202 IFVKPNARKPLPQALSK----ERRERPQDRPEDLDVPPALADFIHQQRAQQ 248
Score = 37 (18.1 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 535 KARLQSLTKPVEKLQPSLDGMKKKQQQQ 562
+A L++ TK E+ L +++KQ+++
Sbjct: 744 QAALENATKKRERATSDLRTIEQKQEKK 771
>UNIPROTKB|A7E323 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 CTD:5394 eggNOG:COG0349 HOGENOM:HOG000001579
HOVERGEN:HBG051524 KO:K12591 OrthoDB:EOG4X6C7P
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 EMBL:BC151674
IPI:IPI00904680 RefSeq:NP_001095656.1 UniGene:Bt.59475 SMR:A7E323
STRING:A7E323 Ensembl:ENSBTAT00000057296 GeneID:535340
KEGG:bta:535340 NextBio:20876706 Uniprot:A7E323
Length = 702
Score = 932 (333.1 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 178/357 (49%), Positives = 248/357 (69%)
Query: 190 PKLKEKPNALKPLAILLEKYDAIES--FCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
P+ + P AL L I ++ +E F HPY+YELD + P + L+ EP+ P+ +T
Sbjct: 228 PEDLDVPPALADL-IHQQRTQQVEQDMFAHPYQYELDHFTPPDSVLQKPEPQLYRPVGET 286
Query: 248 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLR 307
P ++ +++ +L +L + QE A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR
Sbjct: 287 PCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELR 346
Query: 308 EDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL 367
D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +L
Sbjct: 347 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHL 406
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLV 427
LK YC V+S+K +QL DWR RPLPE + YAR DTHYLLY+YD M+L+L + + +
Sbjct: 407 LKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQPTQL 466
Query: 428 LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDE 486
+ SR+IC K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DE
Sbjct: 467 QVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDE 526
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
S GYVLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 527 SYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 241 (89.9 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 48/113 (42%), Positives = 75/113 (66%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N QQ A + L+ WRD+ AR +DES GY
Sbjct: 478 LKKFIKPIFTDESYLE-LYRKQKKHL------NTQQLTAFQLLFAWRDKTARREDESYGY 530
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTK 650
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 531 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 583
Score = 170 (64.9 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 67/217 (30%), Positives = 102/217 (47%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A ++V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L + ND +LE + +D +G VLP+ P+
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPQT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ KA + K KS + +L+ A I RPQL+F+ K+DNS F PK
Sbjct: 152 IVSSWNR--KAGE-----YSKKTKSETFRLLH--AKNIIRPQLKFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVP 228
+ KPNA KPL L K E P + DL VP
Sbjct: 202 IFIKPNAQKPLPQALSK----ERRERPQDRPEDLDVP 234
Score = 38 (18.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 276 EYHNYRSYQGYT--C------LMQISTRDKDY------IVDTLKLREDLEVLNEVLTDKN 321
EY YRS+ G+ C L+Q +R Y I D K+ E LE ++L D N
Sbjct: 59 EYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTE-LEDKFDLLVDTN 117
Query: 322 IV 323
V
Sbjct: 118 DV 119
>MGI|MGI:1355322 [details] [associations]
symbol:Exosc10 "exosome component 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=ISO] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004532 "exoribonuclease activity" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=ISO] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071034 "CUT catabolic
process" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
[GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of
transcription" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 MGI:MGI:1355322 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
GO:GO:0008408 GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819
GO:GO:0009048 GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394
eggNOG:COG0349 HOGENOM:HOG000001579 HOVERGEN:HBG051524 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P ChiTaRS:EXOSC10 GO:GO:0004532
GO:GO:0071048 EMBL:AF091392 EMBL:AF091505 EMBL:AF091506
EMBL:AF092074 EMBL:AF092075 EMBL:AF092076 EMBL:AF092077
EMBL:AF092078 EMBL:AF092079 EMBL:AF092080 EMBL:AF092081
EMBL:AF092082 EMBL:AF092083 EMBL:AL606969 EMBL:AL713995
IPI:IPI00342382 RefSeq:NP_057908.2 UniGene:Mm.266635
ProteinModelPortal:P56960 SMR:P56960 STRING:P56960
PhosphoSite:P56960 PaxDb:P56960 PRIDE:P56960
Ensembl:ENSMUST00000017408 GeneID:50912 KEGG:mmu:50912
GeneTree:ENSGT00390000015408 InParanoid:B1ARY9 NextBio:307899
Bgee:P56960 CleanEx:MM_EXOSC10 Genevestigator:P56960
GermOnline:ENSMUSG00000017264 Uniprot:P56960
Length = 887
Score = 914 (326.8 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 173/363 (47%), Positives = 247/363 (68%)
Query: 213 ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIA 272
+ F HPY+YELD + P + L+ +P+ + +TP +++ +++ +L +L QE A
Sbjct: 252 DMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFA 311
Query: 273 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 332
+DLE+H+YRS+ G TCLMQISTR +D+IVDTL+LR D+ +LNE LTD IVKVFHGADSD
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSD 371
Query: 333 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 392
I+WLQKDFGLYVV MFDTHQA + L + R SL +LL+ YC V+S+K +QL DWR RPLPE
Sbjct: 372 IEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPE 431
Query: 393 PAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGY 452
+ YAR DTHYLLY+YD M+L+L + + + + SR+IC K+ KP+F +E Y
Sbjct: 432 EMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESY 491
Query: 453 MNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 511
+ ++R LN+QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI
Sbjct: 492 LELYRKQKKHLNSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGI 551
Query: 512 FACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDG---MKKKQQQQVSPPHD 568
ACCNPVP V++ + ++H +I +AR L K G ++ + + PHD
Sbjct: 552 IACCNPVPPLVRQQINEMHLLIQQAREMPLLKSENAAGVRKSGPLPSAERLENDLFGPHD 611
Query: 569 SNN 571
++
Sbjct: 612 CSH 614
Score = 250 (93.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 83/272 (30%), Positives = 128/272 (47%)
Query: 538 LQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY 597
L+ KP+ + L+ + +KQ++ + N+QQ A + L+ WRD+ AR +DES GY
Sbjct: 478 LKKFVKPIFTDESYLE-LYRKQKKHL------NSQQLTAFQLLFAWRDKTARREDESYGY 530
Query: 598 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQP 657
VLPNHM+L++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR PL K
Sbjct: 531 VLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSENAAGV 590
Query: 658 SLDGM--XXXXXXXXVSPPHDSMDCL--NYK-----GLPPVFPNNIICAPSNTHLSSYDP 708
G + PHD NY+ G P+ + S
Sbjct: 591 RKSGPLPSAERLENDLFGPHDCSHAPPDNYQNTSTDGTLPLQKQPSLFTEGKEETSVDAG 650
Query: 709 QDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSR-----FETPYQRFLKSKEYAKAIQE--K 761
A I LF E + G + K ++ FE P++ FL S E+ I + K
Sbjct: 651 CLLATAVITLFSEPNTEEGGKTPLTVAQKKAQNIMQSFENPFRMFLPSLEHKAHISQAAK 710
Query: 762 VDK-----ENAEQKKIDALTPQVKTEPEENVK 788
D E + + K+ A QV+ EP+E K
Sbjct: 711 FDPSSKIYEISNRWKL-ASQVQVQKEPKEATK 741
Score = 185 (70.2 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 72/231 (31%), Positives = 109/231 (47%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPST-HENSLLIASPNYISGVAGTSDKVMTLVDSLLK--- 78
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 79 -TQNISKSMSKLY-LEGQKDILTEANDKLLESINTRIDVMAGTKTPS--VLPSQ---PKI 131
NI K SK+ LE + D+L + ND +LE + +D +G VLP+ PK
Sbjct: 93 CRSNI-KDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQPVLPAGLQVPKT 151
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
+ SWN+ KA + K KS + +L+ A I RPQL+F+ K+DNS F PK
Sbjct: 152 IVSSWNR--KAGE-----YGKKAKSETFRLLH--AKNIVRPQLRFREKIDNSNTP-FLPK 201
Query: 192 LKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKE--DFLKCEEPKQ 240
+ KPNA KPL + L K E P + DL VP DF+ + +Q
Sbjct: 202 IFVKPNARKPLPLALSK----ERRERPQDRPEDLDVPPALADFIHQQRTQQ 248
Score = 37 (18.1 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 535 KARLQSLTKPVEKLQPSLDGMKKKQQQQ 562
+A L++ TK E+ L +++KQ+++
Sbjct: 772 QAALENATKKRERATSDLRTIEQKQEKK 799
>ZFIN|ZDB-GENE-040426-781 [details] [associations]
symbol:exosc10 "exosome component 10" species:7955
"Danio rerio" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
ZFIN:ZDB-GENE-040426-781 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
CTD:5394 KO:K12591 OMA:GNKSMSF GeneTree:ENSGT00390000015408
EMBL:CR318666 IPI:IPI00860469 RefSeq:NP_957383.2 UniGene:Dr.75500
Ensembl:ENSDART00000137410 GeneID:394064 KEGG:dre:394064
NextBio:20815021 ArrayExpress:F1Q5Q7 Bgee:F1Q5Q7 Uniprot:F1Q5Q7
Length = 899
Score = 964 (344.4 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 204/465 (43%), Positives = 287/465 (61%)
Query: 129 PKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKV---DNSYE 185
PKI+ SWN+ S Q K+ L K +++ F K+ N+ +
Sbjct: 153 PKIIVSSWNRKGGGSRA-QTFQLLAAKNIQRPQL-KFRDKVDNSNTPFLSKIFIKPNAVK 210
Query: 186 QL---FEPK--LKEKPNALKPLAILLE-------KYDAIESFCHPYEYELDLYVPKEDFL 233
L F K KE+P L A L + K + F HPY+YELD V E+ L
Sbjct: 211 PLPSYFADKHIRKERPEDLDVPAALADFIHQQRTKEHVDDMFSHPYQYELDHLVMPEN-L 269
Query: 234 KCE-EPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQI 292
KC+ E + P+ +TP I+ E + L +L + E A+DLE+H+YRS+ G TCLMQI
Sbjct: 270 KCKPEVQMYKPIDETPCQFISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQI 329
Query: 293 STRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQ 352
STR++D+I+DTL+LR ++ +LNE TD IVKVFHGADSDI+WLQKDFGLYVV MFDTH
Sbjct: 330 STREEDFIIDTLELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHH 389
Query: 353 ACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 412
A + L + R SL +LLK YCDV SDK +QL DWR RPLP+ ++YA+ DTHYLLYVYD +
Sbjct: 390 AARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYDRV 449
Query: 413 KLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALR 471
+ DL +G+ L+ +T SR++ KY KP+F E+ YM ++R N QQ A R
Sbjct: 450 RADLFDGGNGQATLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNTQQLAAFR 509
Query: 472 ELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHA 531
+Y WRD++AR++DESTGY+LPNHM++++A +P++ QGI ACCNP P V++ + ++H
Sbjct: 510 LMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQINELHQ 569
Query: 532 IILKARLQSLTKP--VEKLQPSLDGMKKKQQQQVSPPHDSNNQQK 574
+I +AR L K V + + S+ K+K Q + PHD++ +
Sbjct: 570 LIKQARETPLLKAEVVAQKRKSMTP-KRKPQSTLFGPHDTSRSSE 613
Score = 278 (102.9 bits), Expect = 9.1e-34, Sum P(2) = 9.1e-34
Identities = 79/250 (31%), Positives = 121/250 (48%)
Query: 529 IHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIA 588
I + K+R SL K V+ + M+ ++Q+ S N QQ A R +Y WRD++A
Sbjct: 464 IQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKS----FNTQQLAAFRLMYAWRDKLA 519
Query: 589 RDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPL 648
R++DESTGY+LPNHM++++A +P++ QGI ACCNP P V++ + ++H +I +AR PL
Sbjct: 520 REEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQINELHQLIKQARETPL 579
Query: 649 TKPVEKLQPSLDGMXXXXXXXXVSPPHDSM-----DCLNYKGLP-PVFPNNIICAPSNTH 702
K Q + PHD+ D L+ P P + S
Sbjct: 580 LKAEVVAQKRKSMTPKRKPQSTLFGPHDTSRSSESDFLDLSSFETPTKPGMLF---SEED 636
Query: 703 LSSYDPQDKKI------AQIGLFFEDKMKIGSN---KYQKIKLKTSRFETPYQRFLKSKE 753
S D + K + A+I LF ED ++ QK FE P++ +L SK+
Sbjct: 637 EESVDREKKSVHGLTAPAKISLFAEDVSPASAHLTVAQQKSHSIMESFENPFRMYLPSKD 696
Query: 754 YAKAIQEKVD 763
+ K D
Sbjct: 697 IHISKNAKYD 706
Score = 179 (68.1 bits), Expect = 9.1e-34, Sum P(2) = 9.1e-34
Identities = 68/247 (27%), Positives = 110/247 (44%)
Query: 9 PKSDEANKELS-----KTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIAS-PNYISGV 62
P ++E E K D V++ ++V TK + + PS + L S ++
Sbjct: 18 PSAEETEAETEFCPGFKDVDTFVKHGLGAVVSATKASAALPSAGDEFDLYRSFSSFQQFC 77
Query: 63 AGTSDKVMTLVDSLLKTQNISKSM---SKLY-LEGQKDILTEANDKLLESINTRIDVMAG 118
A D+++ + +++ M +KL LE + D++ +AND +LE + +D +G
Sbjct: 78 ASQGDRLLHCMSQIMQHHGCRSHMRDRNKLTGLEDRFDLVVDANDAILEKVGILLDEASG 137
Query: 119 TKTPS--VLPS---QPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQ 173
V+P+ PKI+ SWN+ S A F L A I+RPQ
Sbjct: 138 VSRSQQPVMPAGYQPPKIIVSSWNRKGGGSR------------AQTFQL-LAAKNIQRPQ 184
Query: 174 LQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFL 233
L+F+ KVDNS F K+ KPNA+KPL Y A + +LD+ DF+
Sbjct: 185 LKFRDKVDNSNTP-FLSKIFIKPNAVKPLP----SYFADKHIRKERPEDLDVPAALADFI 239
Query: 234 KCEEPKQ 240
+ K+
Sbjct: 240 HQQRTKE 246
Score = 37 (18.1 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 542 TKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYAL 577
TKP +K Q + + +Q P+D + Q + L
Sbjct: 810 TKPAKKKQKQKTAQEPEAPKQDFKPYDYS-QSNFKL 844
>POMBASE|SPAC1F3.01 [details] [associations]
symbol:rrp6 "exosome 3'-5' exoribonuclease subunit Rrp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 PomBase:SPAC1F3.01 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0071038 SUPFAM:SSF47819
GO:GO:0000176 GO:GO:0000175 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 eggNOG:COG0349 KO:K12591
PIR:T38769 RefSeq:NP_593004.2 ProteinModelPortal:Q10146
STRING:Q10146 EnsemblFungi:SPAC1F3.01.1 GeneID:2543630
KEGG:spo:SPAC1F3.01 OMA:YGIVCLM OrthoDB:EOG4SJ8P0 NextBio:20804636
Uniprot:Q10146
Length = 777
Score = 801 (287.0 bits), Expect = 8.4e-85, Sum P(3) = 8.4e-85
Identities = 186/506 (36%), Positives = 298/506 (58%)
Query: 86 MSKLYLEGQKDIL-TEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASN 144
+SK+ +DI+ E D ++ +D++ S+ +Q + K + +A S+
Sbjct: 54 LSKVDRSRAEDIVDVEDIDNRWAEVSDTLDILFEKADYSIDKAQGLLKKPAIETHASTSD 113
Query: 145 VWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAI 204
V + KK+ + +++ A + +PQL+F+V+ +NS E ++ KL EKP++L PL
Sbjct: 114 VANK--KPKKEKLPYKVIH--AAHLTKPQLRFRVQPNNSREFVWSWKLTEKPHSLVPLEK 169
Query: 205 LLE--KYDAI--ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT-PLMMITEPEQVT 259
++ K D S HPYE E+ V + P + +T P+ + TE Q++
Sbjct: 170 IIAQVKLDPSLKNSLPHPYEPEIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTE-SQLS 228
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
++ EL+ +EIA+DLE+H+YRS++G+ CLMQIS R+KD+IVDTL+LRE+LE LN V T+
Sbjct: 229 DMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTN 288
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
NI+KVFHGA DI WLQ+DFGLYVV +FDT+ A K L LA+LL+ YCD D+DK
Sbjct: 289 PNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKR 348
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-SAAAHGKQNLVLSTFTNSRNIC 438
+Q+ DWR RPLP ++YA++DTHYLLY++D ++ +L S +A K+NL+ S F +S+ I
Sbjct: 349 YQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQSVFNSSKQIS 408
Query: 439 KLKYE----KPVFN--EEGYMNI---FRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
KYE P++ +G+ N+ F S ++ + R L+ WRD +AR +DES
Sbjct: 409 LRKYELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVR 468
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ 549
YVLPN +L+ +A S P + +F+ + + +V DI ++ +A + + V++ +
Sbjct: 469 YVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIVKVVQEAE-KLYNEQVDREK 527
Query: 550 PSLDGMKKKQQQQVSPPHDSNNQQKY 575
++K Q Q ++ +SN Y
Sbjct: 528 SQFKEVEK-QNQPLAVFSESNTLGDY 552
Score = 42 (19.8 bits), Expect = 8.4e-85, Sum P(3) = 8.4e-85
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEEN 786
+E K E+VD+E ++ K+++ + E N
Sbjct: 513 QEAEKLYNEQVDREKSQFKEVEKQNQPLAVFSESN 547
Score = 38 (18.4 bits), Expect = 8.4e-85, Sum P(3) = 8.4e-85
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 7 EIPKSDEANKELSKTFDVLVQNAYKSIVK 35
++ D E+S T D+L + A SI K
Sbjct: 67 DVEDIDNRWAEVSDTLDILFEKADYSIDK 95
Score = 37 (18.1 bits), Expect = 2.8e-84, Sum P(3) = 2.8e-84
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 546 EKLQPSLDGMKKKQQQQVSPPHDSNNQQK 574
E PSL+G +KKQ+ V N Q++
Sbjct: 630 EAANPSLNG-EKKQEPIVIRDLGLNKQKR 657
>DICTYBASE|DDB_G0271572 [details] [associations]
symbol:exosc10 "exosome component 10" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00474 dictyBase:DDB_G0271572 GO:GO:0005730 GO:GO:0000166
GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000006
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
RefSeq:XP_645586.2 ProteinModelPortal:Q55AW0 STRING:Q55AW0
EnsemblProtists:DDB0233752 GeneID:8618039 KEGG:ddi:DDB_G0271572
OMA:LRSHIHM ProtClustDB:CLSZ2847850 Uniprot:Q55AW0
Length = 1195
Score = 660 (237.4 bits), Expect = 1.5e-82, Sum P(3) = 1.5e-82
Identities = 158/423 (37%), Positives = 241/423 (56%)
Query: 30 YKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKL 89
+ +V+ K + + PS + S P + + +++ L + ++++N +S
Sbjct: 26 FGGLVQAAKLSNNLPSEEDYSYYETFPEFKLKMNSLGKRLLNLAQNFVQSENPKSDLS-- 83
Query: 90 YLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEV 149
L D+ D L + + +D++ G ++ K + +N+N + +
Sbjct: 84 -LTDTNDV-----DDLSDRFSGIVDIVDG-----MIDKVDKTIDPKYNQNQTNIFISSTI 132
Query: 150 HD-NKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK 208
N KK+ N + G I RPQ +F+ DN+ F PK++ KPNA+ L + +K
Sbjct: 133 QPGNSKKAGNEINMFYGN-NIVRPQHKFEDPFDNNNFP-FLPKIRSKPNAMVELDEVFKK 190
Query: 209 Y--------DAIES-------FCHPYEYELDLY-VPKEDFLKCEEPKQALPLSDTPLMMI 252
I S F HPYEYE++ + ++ +C+E A L +TP +
Sbjct: 191 SIPKEISFGKIIRSKEQEGIIFPHPYEYEINNFKYTEQQTQQCKEIL-ARGLDETPFTWV 249
Query: 253 TEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV 312
Q+ +LV +L QEIAIDLE+H+YR+YQG+TCLMQISTR +D+++DTL LR + +
Sbjct: 250 ETVRQLEELVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLLRSHIHM 309
Query: 313 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYC 372
LN+V T+ +IVKV HG+DSDIKWLQ+DFG+Y+V MFDT QA + L P SLA+LLK YC
Sbjct: 310 LNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYPSASLAFLLKFYC 369
Query: 373 DVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS-TF 431
+D++K +QL DWR R LPE I+YAR DTHYLLY+YD ++ +L + G +NL S T
Sbjct: 370 AIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNEL--ISKGNKNLGSSGTS 427
Query: 432 TNS 434
TN+
Sbjct: 428 TNT 430
Score = 223 (83.6 bits), Expect = 1.5e-82, Sum P(3) = 1.5e-82
Identities = 83/356 (23%), Positives = 155/356 (43%)
Query: 425 NLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARD 483
+L+L SR + L+YEK + ++ ++N + L + Q L+ LY WR+ +ARD
Sbjct: 441 HLLLEVLRRSRELSLLRYEKDILDDNSHINFAKKLNLQYSPTQLNVLKVLYHWREGLARD 500
Query: 484 KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
+DES Y+LPN M+L + + P +Q + C+P+P ++K+H + ILKAR++ +K
Sbjct: 501 EDESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHSHQLIQEILKARIEDPSK 560
Query: 544 PVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGY---VLP 600
+ P L + Q S + QQ+ +++ + + A ++T + P
Sbjct: 561 QPSFI-PQLHSLLNNQ----SNVFYTQKQQQIQQQQIQQQQQVTAATVPQATTIKPIIQP 615
Query: 601 NHMLLQMAQSIPRDIQGIFA--CCNPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQPS 658
Q Q P+ Q I +PVP +K H + ++ +L L K + L
Sbjct: 616 PPPQQQQLQQ-PQQQQPIKTERSLSPVPN-IKNH--NSNSPVLTT--DQLYKTAKWLSSD 669
Query: 659 LDGMXXXXXXXXVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIG- 717
+D + H +M +N L P F + +T +SS + + I
Sbjct: 670 VDNATGNGNFGQSATTHVAM--VN--NLQPAFQSLTSIGKKSTCVSSVNQSNHSSTSIST 725
Query: 718 --LFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKK 771
LF D G ++ + ++ R + + YA + ++ +Q++
Sbjct: 726 NSLF--DISSSGDDENHPDRKRSKRIASMVASSFEQSTYAPVFKPTQQLKSIDQQQ 779
Score = 43 (20.2 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 529 IHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNN 571
I +++ + QS PV K L + ++QQQ + +++NN
Sbjct: 749 IASMVASSFEQSTYAPVFKPTQQLKSIDQQQQQSDNNNNNNNN 791
Score = 42 (19.8 bits), Expect = 6.4e-63, Sum P(2) = 6.4e-63
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 535 KARLQSLTKPVEKLQPSLDGMKKKQQQQ 562
K LQ + +QPS + +QQQQ
Sbjct: 1102 KQTLQQQPSQQQPIQPSQQPQQPQQQQQ 1129
Score = 39 (18.8 bits), Expect = 1.5e-82, Sum P(3) = 1.5e-82
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQI 799
K KE + +I + +D+ K++ +EN +T LK+I
Sbjct: 958 KLKENS-SISATTSLSTSPSSLLDSTNNPPKSKKDENASVTDTFSFLKEI 1006
Score = 37 (18.1 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 52 LIASPNYISGVAGTSDKVMTLVDSLLKT----QNISKSMSKLYLEGQKDILTE 100
LI+ N G +GTS T + L + + +S L +KDIL +
Sbjct: 413 LISKGNKNLGSSGTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDD 465
>WB|WBGene00000796 [details] [associations]
symbol:crn-3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA;TAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0043277 "apoptotic cell
clearance" evidence=IDA] [GO:0000178 "exosome (RNase complex)"
evidence=TAS] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0006309 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
GO:GO:0043277 EMBL:Z49909 KO:K12591 GeneTree:ENSGT00390000015408
EMBL:AY303577 PIR:T19246 RefSeq:NP_496283.1 UniGene:Cel.7455
ProteinModelPortal:G5EBX6 SMR:G5EBX6 PRIDE:G5EBX6
EnsemblMetazoa:C14A4.4a GeneID:3565889 KEGG:cel:CELE_C14A4.4
CTD:3565889 WormBase:C14A4.4a OMA:TEEEHPY NextBio:958247
Uniprot:G5EBX6
Length = 876
Score = 786 (281.7 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 171/390 (43%), Positives = 239/390 (61%)
Query: 167 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNAL-KPLAILLEKYD--------AIESFC- 216
V +E+PQ + + DNS + F KL K +A+ K I+L D + E+
Sbjct: 185 VVLEKPQKTYNISSDNS-QAPFSSKLTVKHHAIEKRTGIVLHDDDESGRRDWISAETETE 243
Query: 217 --HPYEYE-LDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 273
HPY E L VP+ LK E + L DTPL MI E++ L L +E A+
Sbjct: 244 EEHPYIAEILHFKVPEAQ-LKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEFAV 302
Query: 274 DLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDI 333
DLE+H RSY G TCL+QISTRD+D+I+D + + + +LNE + I+KVFHG+DSD+
Sbjct: 303 DLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVGMLNEPFANPRILKVFHGSDSDV 362
Query: 334 KWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 393
WLQ+D+G++VV +FDT+ A K L P+ SLAYL + DV DK +QL DWR RPL
Sbjct: 363 LWLQRDYGVHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNA 422
Query: 394 AIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYM 453
I YAR DTHYLLY YD ++ L ++L + ++ S ++C Y+KPVFN +GY+
Sbjct: 423 MINYAREDTHYLLYSYDMLREQL--LKQDTKDLA-NVYSESSDLCIKVYKKPVFNPKGYL 479
Query: 454 NIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
+ LN +Q YAL L+KWRD +AR +DES +VLPNHM+L +++++PRD+ GI+A
Sbjct: 480 TEIKFRFTLNTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYA 539
Query: 514 CCNPVPQTVKEHVLDIHAIILKARLQSLTK 543
CCNP+P VK+ DI II++AR L K
Sbjct: 540 CCNPLPYFVKQRTGDILKIIVEARDVKLEK 569
Score = 235 (87.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N +Q YAL L+KWRD +AR +DES +VLPNHM+L +++++PRD+ GI+ACCNP+P V
Sbjct: 489 NTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFV 548
Query: 630 KEHVLDIHAIILKARLQPLTK 650
K+ DI II++AR L K
Sbjct: 549 KQRTGDILKIIVEARDVKLEK 569
Score = 60 (26.2 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKID 773
E K + K +K+ + +F TP++ + + K QE+ +++ AE+KK++
Sbjct: 655 EKGKKSDNQKVKKLLNELDKFVTPFECY-QMMMITKEKQEEEERKEAERKKLE 706
>ASPGD|ASPL0000094155 [details] [associations]
symbol:AN11773 species:162425 "Emericella nidulans"
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0071037
"nuclear polyadenylation-dependent snRNA catabolic process"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 InterPro:IPR019465
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 Pfam:PF10392 PROSITE:PS50967
SMART:SM00474 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0008408 EMBL:AACD01000084
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1 ProteinModelPortal:Q5B379
STRING:Q5B379 EnsemblFungi:CADANIAT00005393 GeneID:2872798
KEGG:ani:AN5001.2 Uniprot:Q5B379
Length = 1297
Score = 815 (292.0 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 209/632 (33%), Positives = 333/632 (52%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S F + S++ T+T + N +S N G+ S ++++L SLLK
Sbjct: 4 STGFAPFQERVQTSLMDVTRTVGALAVNDLNFHRTSSANVSEGLDEESGRLLSLTSSLLK 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+S L + I + + D LLE + +D G + PSQ K
Sbjct: 64 AATAGTDISAPVLSDEDSIEDNWRGIVDVIDALLEKADACLDEFTGV-IKKLSPSQDK-- 120
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
++ + A ASN+ +++ N+ + + G +I +PQLQF+ +VD + F P
Sbjct: 121 -DAEARGAAASNM--------RRAQNFPTIYDYGPSKIPKPQLQFEHQVDPTDTSPFRPL 171
Query: 192 LKEKPNALKPLA-ILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
LK KP+A++PL L DA +PYE E+ P LP T
Sbjct: 172 LKTKPHAIEPLEQSLTPSIDAPHGSRNPYETEIRAAKYPSSVYTVSPPIDYLPFETTAAT 231
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRED 309
+ + V ++++ELK +EIAIDLE+H+ SY G LMQISTR+KD++VDTLK RE+
Sbjct: 232 FVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREE 291
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L++LNEV D NI+K+FHG+ DI WLQ+D GLYVVGMFDT+ A L P++SL YLL
Sbjct: 292 LQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKKSLKYLLH 351
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + ++DK +Q+ DWR RPLP YAR+DTHYLLY+YD ++ +L + + NLV
Sbjct: 352 KFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYDNLRNELLTNSTPEDNLVDY 411
Query: 430 TFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWRDRIAR 482
S+ +YE+PV++ G+ ++ RS A+L+++Q L+ +++WRDR+AR
Sbjct: 412 VLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPAILSSEQFAVLKAVHEWRDRVAR 471
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 542
++DE V P H+L ++AQ++P+D+ +F +P+ K+ D+ +I A+ + T
Sbjct: 472 EEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTMSPMTPIAKDRAPDLLQVIKTAKAEGAT 531
Query: 543 KPVEK---LQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVL 599
P + ++P+ G+ + + SPP + A R Y+ D T +
Sbjct: 532 GPEWRDVYVKPTR-GLPQVEAPP-SPPTAQDGSFPTASR--YETSQFWGAVLDTQTPPLS 587
Query: 600 PNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
P + L A+++ + P+P+TV E
Sbjct: 588 PEYSLAASAEALRLSLP-----IPPMPRTVAE 614
Score = 148 (57.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q L+ +++WRDR+AR++DE V P H+L ++AQ++P+D+ +F +P+
Sbjct: 452 SSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTMSPMTPIA 511
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K+ D+ +I A+ + T P
Sbjct: 512 KDRAPDLLQVIKTAKAEGATGP 533
>ASPGD|ASPL0000095540 [details] [associations]
symbol:AN11774 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
InterPro:IPR019465 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
Pfam:PF10392 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 EMBL:BN001303
GO:GO:0008408 EMBL:AACD01000084 SUPFAM:SSF47819 GO:GO:0000176
eggNOG:COG0349 KO:K12591 OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1
ProteinModelPortal:Q5B379 STRING:Q5B379
EnsemblFungi:CADANIAT00005393 GeneID:2872798 KEGG:ani:AN5001.2
Uniprot:Q5B379
Length = 1297
Score = 815 (292.0 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 209/632 (33%), Positives = 333/632 (52%)
Query: 19 SKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLK 78
S F + S++ T+T + N +S N G+ S ++++L SLLK
Sbjct: 4 STGFAPFQERVQTSLMDVTRTVGALAVNDLNFHRTSSANVSEGLDEESGRLLSLTSSLLK 63
Query: 79 TQNISKSMSKLYLEGQKDI------LTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIV 132
+S L + I + + D LLE + +D G + PSQ K
Sbjct: 64 AATAGTDISAPVLSDEDSIEDNWRGIVDVIDALLEKADACLDEFTGV-IKKLSPSQDK-- 120
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANW-FMLNKGAVEIERPQLQFKVKVDNSYEQLFEPK 191
++ + A ASN+ +++ N+ + + G +I +PQLQF+ +VD + F P
Sbjct: 121 -DAEARGAAASNM--------RRAQNFPTIYDYGPSKIPKPQLQFEHQVDPTDTSPFRPL 171
Query: 192 LKEKPNALKPLA-ILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLM 250
LK KP+A++PL L DA +PYE E+ P LP T
Sbjct: 172 LKTKPHAIEPLEQSLTPSIDAPHGSRNPYETEIRAAKYPSSVYTVSPPIDYLPFETTAAT 231
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LRED 309
+ + V ++++ELK +EIAIDLE+H+ SY G LMQISTR+KD++VDTLK RE+
Sbjct: 232 FVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREE 291
Query: 310 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLK 369
L++LNEV D NI+K+FHG+ DI WLQ+D GLYVVGMFDT+ A L P++SL YLL
Sbjct: 292 LQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKKSLKYLLH 351
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
+ + ++DK +Q+ DWR RPLP YAR+DTHYLLY+YD ++ +L + + NLV
Sbjct: 352 KFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYDNLRNELLTNSTPEDNLVDY 411
Query: 430 TFTNSRNICKLKYEKPVFNEE------GYMNIF-RSHALLNNQQKYALRELYKWRDRIAR 482
S+ +YE+PV++ G+ ++ RS A+L+++Q L+ +++WRDR+AR
Sbjct: 412 VLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPAILSSEQFAVLKAVHEWRDRVAR 471
Query: 483 DKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 542
++DE V P H+L ++AQ++P+D+ +F +P+ K+ D+ +I A+ + T
Sbjct: 472 EEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTMSPMTPIAKDRAPDLLQVIKTAKAEGAT 531
Query: 543 KPVEK---LQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVL 599
P + ++P+ G+ + + SPP + A R Y+ D T +
Sbjct: 532 GPEWRDVYVKPTR-GLPQVEAPP-SPPTAQDGSFPTASR--YETSQFWGAVLDTQTPPLS 587
Query: 600 PNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
P + L A+++ + P+P+TV E
Sbjct: 588 PEYSLAASAEALRLSLP-----IPPMPRTVAE 614
Score = 148 (57.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+++Q L+ +++WRDR+AR++DE V P H+L ++AQ++P+D+ +F +P+
Sbjct: 452 SSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTMSPMTPIA 511
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
K+ D+ +I A+ + T P
Sbjct: 512 KDRAPDLLQVIKTAKAEGATGP 533
>SGD|S000005527 [details] [associations]
symbol:RRP6 "Nuclear exosome exonuclease component"
species:4932 "Saccharomyces cerevisiae" [GO:0034475 "U4 snRNA
3'-end processing" evidence=IGI;IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA;IDA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IMP] [GO:0071049 "nuclear retention of pre-mRNA with
aberrant 3'-ends at the site of transcription" evidence=IGI]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IGI;IMP] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IMP]
[GO:0071040 "nuclear polyadenylation-dependent antisense transcript
catabolic process" evidence=IMP] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IMP] [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IMP]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI;IMP] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000973
"posttranscriptional tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0071033 "nuclear retention of
pre-mRNA at the site of transcription" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 SGD:S000005527
GO:GO:0005730 EMBL:BK006948 GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071039 GO:GO:0071035 GO:GO:0071036
GO:GO:0071037 GO:GO:0071038 EMBL:U43491 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0000176 GO:GO:0000175 GO:GO:0000467
GO:GO:0071042 GO:GO:0071051 eggNOG:COG0349 KO:K12591
GeneTree:ENSGT00390000015408 GO:GO:0000973 GO:GO:0034475
GO:GO:0034476 GO:GO:0071049 GO:GO:0071040 GO:GO:0034473 OMA:YGIVCLM
OrthoDB:EOG4SJ8P0 EMBL:Z74909 EMBL:AY692850 PIR:S61984
RefSeq:NP_014643.1 PDB:1M0Y PDB:2HBJ PDB:2HBK PDB:2HBL PDB:2HBM
PDBsum:1M0Y PDBsum:2HBJ PDBsum:2HBK PDBsum:2HBL PDBsum:2HBM
ProteinModelPortal:Q12149 SMR:Q12149 DIP:DIP-4560N IntAct:Q12149
MINT:MINT-534618 STRING:Q12149 PaxDb:Q12149 EnsemblFungi:YOR001W
GeneID:854162 KEGG:sce:YOR001W CYGD:YOR001w HOGENOM:HOG000196525
EvolutionaryTrace:Q12149 NextBio:975938 Genevestigator:Q12149
GermOnline:YOR001W Uniprot:Q12149
Length = 733
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 189/514 (36%), Positives = 289/514 (56%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 129 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 188
Query: 225 LYVPKEDFLKCEEPKQALPLSDT-PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ L+ E + D+ P+ + T E + ++ +LK +EIA+DLE+H+YRSY
Sbjct: 189 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTE-LESMLEDLKNTKEIAVDLEHHDYRSY 247
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLY
Sbjct: 248 YGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLY 307
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VVG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P YAR DTH
Sbjct: 308 VVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTH 367
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPVF-NEEGYMNIFRS 458
+LL +YD ++ L + N + SRN+ K ++E +P+ + E Y I +
Sbjct: 368 FLLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKE 422
Query: 459 HA--LLNNQ------QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+L Q ++ +RELY+WRD IAR DES +V+PN +L + P D+ G
Sbjct: 423 SPWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIG 482
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQ---QQVSPPH 567
+ + N V + V+++ + A +++ L+++ E+ P K + +S P
Sbjct: 483 VVSLTNGVTEHVRQNA-KLLANLIRDALRNIKNTNEEATPIPSSETKADGILLETISVPQ 541
Query: 568 DSNNQQKYAL---RELYKWRDRIARDKDESTGYVLPN--HMLLQMAQSIPRDIQGIFACC 622
+ +++++ + K R + + G +LP H + +P ++
Sbjct: 542 IRDVMERFSVLCNSNISKSRAKPVTNSSILLGKILPREEHDIAYSKDGLPNKVKTEDIRI 601
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQ 656
Q K + ++ II + +PL PV KL+
Sbjct: 602 RA--QNFKSALANLEDIIFEIE-KPLVVPV-KLE 631
>UNIPROTKB|Q95Z10 [details] [associations]
symbol:RRP6 "Rrp6p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AJ309000
ProteinModelPortal:Q95Z10 IntAct:Q95Z10 STRING:Q95Z10
EuPathDB:TriTrypDB:Tb427.04.1630 EuPathDB:TriTrypDB:Tb927.4.1630
Uniprot:Q95Z10
Length = 703
Score = 652 (234.6 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 151/387 (39%), Positives = 220/387 (56%)
Query: 156 SANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESF 215
S+++ + N V + RPQL F+ VDNS F P ++ ++ + E
Sbjct: 131 SSSYSVFNAAGVSVLRPQLTFEHPVDNSPTP-FRPVYYDE-KGVRHVG---------EPG 179
Query: 216 CHPYEYELD-LYVPKEDFL-KCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 273
HP+ + + VP E L K E P L L PL + E + LV+ L + EIA+
Sbjct: 180 VHPFAERIKAVSVPSEQLLLKTETPY--LSLVTCPLTFVDTVEDLEALVAVLLNETEIAV 237
Query: 274 DLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDI 333
DLE+H++ SYQG+TCLMQISTR +D+IVD LK+R ++ ++ V NIVKVFHGA D+
Sbjct: 238 DLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRANMYLMAPVFLQPNIVKVFHGAREDV 297
Query: 334 KWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 393
+WLQKDFGLY+V +FDT A + L MP SLA+ + H+C V +K +Q DWR RP+P
Sbjct: 298 RWLQKDFGLYIVNLFDTSIALQNLHMPH-SLAFAVDHFCQVKLNKKYQTADWRVRPIPAE 356
Query: 394 AIQYARTDTHYLLYVYDCMK-LDLSAAAHGKQ-NLVLSTFTNSRNICKLKYEKPVFNEE- 450
+ YA+ DTH+LLYVYD +K L L+ A N++L F SR + +YEKP + +
Sbjct: 357 MVSYAQQDTHFLLYVYDRLKQLLLNCEARASVGNMLLHVFQESRLLSLERYEKPHLDPDV 416
Query: 451 GYMNIF-RSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
Y RS L++ Q RE++ WRD AR+ D+S V+ +L +A +P
Sbjct: 417 TYKQALGRSLGGLSSPQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSAN 476
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKA 536
+ CC+PV V+ +V+ + I+ A
Sbjct: 477 EVLKCCSPVSVAVRTNVMKLLQIVKDA 503
Score = 122 (48.0 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 37/116 (31%), Positives = 60/116 (51%)
Query: 529 IHAIILKARLQSLTKPVEKLQPSLD-GMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRI 587
+H + ++RL SL + EK P LD + KQ S S+ Q + A RE++ WRD
Sbjct: 393 LH-VFQESRLLSLER-YEK--PHLDPDVTYKQALGRSLGGLSSPQLQVA-REIFNWRDMA 447
Query: 588 ARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 643
AR+ D+S V+ +L +A +P + CC+PV V+ +V+ + I+ A
Sbjct: 448 AREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKLLQIVKDA 503
Score = 86 (35.3 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 44/172 (25%), Positives = 81/172 (47%)
Query: 18 LSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDS-- 75
L +T D LV A+ + + TK + + +A P + + S+ V++L+D
Sbjct: 5 LPQTKD-LVNGAFTLVKEYTKLTADL-AEEDYDYHMAFPAFRHQITRHSEAVVSLMDKFC 62
Query: 76 -LLKTQN---ISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKI 131
LL + +S + KL + Q+ + EA D LLE+++ +D + G + L ++ ++
Sbjct: 63 QLLPAKRRVTLSSTGGKL-TDPQRAAVMEAADSLLENVDGLLDELKGRR----LSAKDQL 117
Query: 132 VKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNS 183
+ K + Q V S+++ + N V + RPQL F+ VDNS
Sbjct: 118 -------SVKFGSELQGV----VPSSSYSVFNAAGVSVLRPQLTFEHPVDNS 158
Score = 45 (20.9 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTP------QVKTEPEENVKITQEPVVLKQ 798
+ + + A + V++EN+ ++ P +VK E EE TQ+P+ LK+
Sbjct: 622 EKRVHVDAEEPTVERENSSERGEGMAGPCLQEGLEVKDEVEEIDVPTQKPLELKE 676
Score = 44 (20.5 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 733 KIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKK 771
++K + + P Q+ L+ KE A ++ ++ +A +KK
Sbjct: 656 EVKDEVEEIDVPTQKPLELKEGAISLHQQYGTGSANRKK 694
>CGD|CAL0000608 [details] [associations]
symbol:RRP6 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0071036 "nuclear polyadenylation-dependent snoRNA
catabolic process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071037 "nuclear polyadenylation-dependent snRNA catabolic
process" evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 704 (252.9 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 172/427 (40%), Positives = 246/427 (57%)
Query: 138 KNAKASNVWQEVH--DNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
+ AK QE+ DN K S + N+ A +IE+PQL+FKV +DNS F+PKL K
Sbjct: 109 RKAKGITKDQELEYLDNGKTSTTTTISNEKASKIEKPQLKFKVPIDNSESGPFKPKLSSK 168
Query: 196 PNALKPL--AILLEK--Y-DAIES-----FCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
P+AL P +++ + Y D+IE + PYEYE+D P D + + A+P
Sbjct: 169 PHALVPFNDSLINPEPVYEDSIEIIDPPFYAQPYEYEIDNQ-PYPDAILAKS--DAIPPK 225
Query: 246 D---TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
D T + + E++ ++V ELK+ EIA+DLE+H+YRSY G CLMQIS R++D+I+D
Sbjct: 226 DWSTTKAIWVDTVEELQKMVQELKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIID 285
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
TL LR+DL VLNEV D +IVKVFHGA DI WLQ+D GLYVV +FDT A + L PR
Sbjct: 286 TLALRDDLTVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALGFPRF 345
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LD---L 416
SLAYLL+ Y + K +QL DWR RPL P + YAR+DTH+LL++YD +K +D L
Sbjct: 346 SLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405
Query: 417 SAAAHGKQNLVLSTF--TNSR---NICKLKYEKPV--FNEEGYMNIFRSHALLNNQQKYA 469
S + + + F T R N K PV FN + S + + ++
Sbjct: 406 SQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPV 465
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLD 528
+ LYKWRD +A+ +DES Y++PN +L+ +A P D+ + + V+ + +
Sbjct: 466 VEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKE 525
Query: 529 IHAIILK 535
+ +I K
Sbjct: 526 LANLIEK 532
Score = 40 (19.1 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 557 KKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKD 592
KK Q+ D N K L+++ K DR R D
Sbjct: 717 KKVPQEDQKEIDYANADKILLKDIKKKNDRKRRGFD 752
>UNIPROTKB|Q59MB4 [details] [associations]
symbol:RRP6 "Likely nuclear exosome component Rrp6p"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 704 (252.9 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 172/427 (40%), Positives = 246/427 (57%)
Query: 138 KNAKASNVWQEVH--DNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEK 195
+ AK QE+ DN K S + N+ A +IE+PQL+FKV +DNS F+PKL K
Sbjct: 109 RKAKGITKDQELEYLDNGKTSTTTTISNEKASKIEKPQLKFKVPIDNSESGPFKPKLSSK 168
Query: 196 PNALKPL--AILLEK--Y-DAIES-----FCHPYEYELDLYVPKEDFLKCEEPKQALPLS 245
P+AL P +++ + Y D+IE + PYEYE+D P D + + A+P
Sbjct: 169 PHALVPFNDSLINPEPVYEDSIEIIDPPFYAQPYEYEIDNQ-PYPDAILAKS--DAIPPK 225
Query: 246 D---TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
D T + + E++ ++V ELK+ EIA+DLE+H+YRSY G CLMQIS R++D+I+D
Sbjct: 226 DWSTTKAIWVDTVEELQKMVQELKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIID 285
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ 362
TL LR+DL VLNEV D +IVKVFHGA DI WLQ+D GLYVV +FDT A + L PR
Sbjct: 286 TLALRDDLTVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALGFPRF 345
Query: 363 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK---LD---L 416
SLAYLL+ Y + K +QL DWR RPL P + YAR+DTH+LL++YD +K +D L
Sbjct: 346 SLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405
Query: 417 SAAAHGKQNLVLSTF--TNSR---NICKLKYEKPV--FNEEGYMNIFRSHALLNNQQKYA 469
S + + + F T R N K PV FN + S + + ++
Sbjct: 406 SQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPV 465
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ-SIPRDIQGIFACCNPVPQTVKEHVLD 528
+ LYKWRD +A+ +DES Y++PN +L+ +A P D+ + + V+ + +
Sbjct: 466 VEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNVSYRISDAVRINAKE 525
Query: 529 IHAIILK 535
+ +I K
Sbjct: 526 LANLIEK 532
Score = 40 (19.1 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 557 KKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKD 592
KK Q+ D N K L+++ K DR R D
Sbjct: 717 KKVPQEDQKEIDYANADKILLKDIKKKNDRKRRGFD 752
>TAIR|locus:504955936 [details] [associations]
symbol:AT2G32415 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
SMART:SM00474 EMBL:CP002685 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
KO:K12591 IPI:IPI00520495 RefSeq:NP_850189.5 UniGene:At.47141
ProteinModelPortal:F4ITQ6 SMR:F4ITQ6 PRIDE:F4ITQ6
EnsemblPlants:AT2G32415.1 GeneID:817803 KEGG:ath:AT2G32415
OMA:ICVGCGE Uniprot:F4ITQ6
Length = 891
Score = 532 (192.3 bits), Expect = 3.0e-48, P = 3.0e-48
Identities = 136/363 (37%), Positives = 204/363 (56%)
Query: 171 RPQLQFK-VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYV-- 227
+PQ FK V DNSY + KL + ++ LEK S HPYE E+ + +
Sbjct: 50 KPQFGFKRVLADNSYSEFKHLKLVDASSSS------LEK----PSNGHPYETEITVLLEN 99
Query: 228 PKEDF--LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG 285
P+ +F L+ E +L +SD+ + + TE Q+ +L L ++Q A+D E H+ RS+ G
Sbjct: 100 PQIEFGFLRGE---CSLEMSDSYVWVETE-SQLKELAEILAKEQVFAVDTEQHSLRSFLG 155
Query: 286 YTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+T L+QIST ++D++VDT+ L + + +L V +D NI KVFHGAD+D+ WLQ+DF +YVV
Sbjct: 156 FTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215
Query: 346 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 405
MFDT +AC+ L P++SLAYLL+ C V ++K Q DWR RPL E ++YARTD HYL
Sbjct: 216 NMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYL 275
Query: 406 LYVYDCMKLDL------SAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN----I 455
LY+ D + +L S++ + + +L S C Y K + G I
Sbjct: 276 LYIADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSII 335
Query: 456 FR---SHALLNNQQKYA---LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+R H +N A +R+L WRD + R DEST YVL + ++ ++ P +
Sbjct: 336 YRHLNGHGDKSNISLNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTE 395
Query: 510 GIF 512
I+
Sbjct: 396 EIY 398
>TIGR_CMR|GSU_0443 [details] [associations]
symbol:GSU_0443 "ribonuclease D, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 Gene3D:1.10.150.80 SUPFAM:SSF47819
KO:K03684 RefSeq:NP_951502.1 ProteinModelPortal:Q74G09
GeneID:2686317 KEGG:gsu:GSU0443 PATRIC:22023634
HOGENOM:HOG000010987 OMA:LRETTFW ProtClustDB:CLSK924403
BioCyc:GSUL243231:GH27-436-MONOMER Uniprot:Q74G09
Length = 381
Score = 272 (100.8 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 89/291 (30%), Positives = 133/291 (45%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIV 301
+PL +IT + V +L L + +A DLE + YQ CL+Q + IV
Sbjct: 1 MPLQPASPEIITTVDGVRRLADRLGSEPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIV 60
Query: 302 DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR 361
D L D+ L + + I KVFHGAD DI+ L +DFG+ V +FDT AC+ L
Sbjct: 61 DPLAA-PDISPLAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLGERE 119
Query: 362 QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 421
LA L+ V+ DK +Q DW RPL I+YA DT L+ +Y + +L
Sbjct: 120 FGLAAQLRKRFGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEK-- 177
Query: 422 GKQNLVLSTFTNSRNICKLKYEKPVFN--EEGYMNIFRSHALLNNQQKYALRELYKWRDR 479
G++ V C+L V +E + F+ + ++ + L EL +RD
Sbjct: 178 GRRGWV-------EEECELLSRVRVAERGDEPFFLRFKGASRMDGRTLAVLEELLLFRDG 230
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPR---DIQGIFACCNPVPQTVKEHVL 527
AR D VL + ++A+ PR ++QGI + V E +L
Sbjct: 231 RARQFDVPPFKVLGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGIL 281
>TIGR_CMR|CPS_3518 [details] [associations]
symbol:CPS_3518 "ribonuclease D" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
GO:GO:0042780 HOGENOM:HOG000277560 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_270192.1 ProteinModelPortal:Q47YC8
STRING:Q47YC8 GeneID:3519149 KEGG:cps:CPS_3518 PATRIC:21469973
OMA:SRTGTEI BioCyc:CPSY167879:GI48-3546-MONOMER Uniprot:Q47YC8
Length = 379
Score = 260 (96.6 bits), Expect = 9.0e-20, P = 9.0e-20
Identities = 72/263 (27%), Positives = 127/263 (48%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
+I + + + L +L + + +AID E+ R+ L+Q+ ++ ++D L + +DL
Sbjct: 5 LIEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAI-DDL 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY--LL 368
+LT++NI KV H D++ V + D+ FL SL Y ++
Sbjct: 64 APFWALLTNENITKVLHACSEDLEVFLTAGNCKPVNLIDSQIMMSFLGHGL-SLGYAAMV 122
Query: 369 KHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
KH+ D++ DK+ DW RPL E + YA D +L +Y + +++ A L
Sbjct: 123 KHFTDIELDKSESRTDWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGF----LAY 178
Query: 429 STFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDEST 488
+ I K K+ P+ E Y+NI + + LN +Q L+ L WR + A+ +D
Sbjct: 179 AQIETQSMIDK-KFT-PIIESEMYLNI-KMNWRLNPKQLNLLKYLASWRFQQAKKRDLPL 235
Query: 489 GYVLPNHMLLQMAQSIPRDIQGI 511
G+V +H L+ +AQS P + +
Sbjct: 236 GFVAKDHTLMALAQSNPESVNAM 258
>TIGR_CMR|SPO_2167 [details] [associations]
symbol:SPO_2167 "ribonuclease D" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_167394.1 ProteinModelPortal:Q5LRG1
GeneID:3193200 KEGG:sil:SPO2167 PATRIC:23377681
HOGENOM:HOG000277561 OMA:KSKYLHK ProtClustDB:CLSK864964
Uniprot:Q5LRG1
Length = 385
Score = 217 (81.4 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 85/326 (26%), Positives = 144/326 (44%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD----YIVDTLKL 306
+ T PE + + +D E+ R+Y CL+Q++ +D +VD L
Sbjct: 4 LTTTPE-LAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDPLAE 62
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
+LE L + D ++VKVFH A D++ D G++ +FDT A Q + Y
Sbjct: 63 GLELEPLYTLFRDTSVVKVFHAARQDLEIFWVDAGVFPEPLFDTQVAAMVCGFGEQ-VGY 121
Query: 367 --LLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 424
L++ C DKT + DW RPL + YA D +L +Y+ + DL A G+
Sbjct: 122 ETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADL--AKTGRS 179
Query: 425 NLV---LSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY--ALRELYKWRDR 479
+ V L T T+ Y+ + EE + I N K+ +REL ++R+
Sbjct: 180 HWVAEELRTLTDPAT-----YD--IRPEEAWRRI----KTRTNSGKFLAVVRELAQFRES 228
Query: 480 IARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQ 539
A+D + V + L+++A + PR + + + K + D IL A +
Sbjct: 229 YAQDNNVPRNRVFKDDALIELASTKPRTHADLGGSRLLLREARKGAIADG---ILAAVGR 285
Query: 540 SLTKPVEKLQPSLDGMKKKQQQQVSP 565
+ P EK+ + +G ++ QV+P
Sbjct: 286 GIDCPPEKMPKATNG---RENLQVNP 308
>UNIPROTKB|P09155 [details] [associations]
symbol:rnd "RNase D" species:83333 "Escherichia coli K-12"
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0033890 "ribonuclease D activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA;IMP] [GO:0004540
"ribonuclease activity" evidence=IMP] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
GO:GO:0008033 SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0008408
SUPFAM:SSF47819 eggNOG:COG0349 EMBL:X70994 EMBL:X07055 PIR:S01223
RefSeq:NP_416318.1 RefSeq:YP_490065.1 PDB:1YT3 PDBsum:1YT3
ProteinModelPortal:P09155 SMR:P09155 DIP:DIP-10726N IntAct:P09155
MINT:MINT-1309170 PRIDE:P09155 DNASU:946328
EnsemblBacteria:EBESCT00000002543 EnsemblBacteria:EBESCT00000015703
GeneID:12931344 GeneID:946328 KEGG:ecj:Y75_p1779 KEGG:eco:b1804
PATRIC:32118925 EchoBASE:EB0851 EcoGene:EG10858
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG ProtClustDB:PRK10829
BioCyc:EcoCyc:EG10858-MONOMER BioCyc:ECOL316407:JW1793-MONOMER
BioCyc:MetaCyc:EG10858-MONOMER EvolutionaryTrace:P09155
Genevestigator:P09155 GO:GO:0033890 TIGRFAMs:TIGR01388
Uniprot:P09155
Length = 375
Score = 214 (80.4 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 79/307 (25%), Positives = 134/307 (43%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASGW----LP 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+V+ L +A+ +P + G ++ H + A++ KA+ T P + L
Sbjct: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ----TLPEDALP 291
Query: 549 QPSLDGM 555
QP L+ M
Sbjct: 292 QPMLNLM 298
>TIGR_CMR|APH_0137 [details] [associations]
symbol:APH_0137 "putative ribonuclease D" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
KO:K03684 HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
RefSeq:YP_504762.1 ProteinModelPortal:Q2GLI9 STRING:Q2GLI9
GeneID:3930937 KEGG:aph:APH_0137 PATRIC:20948846
BioCyc:APHA212042:GHPM-172-MONOMER Uniprot:Q2GLI9
Length = 381
Score = 208 (78.3 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 65/239 (27%), Positives = 109/239 (45%)
Query: 250 MMITEPEQVTQLVSELKQQ--QEIAIDLEY-HNYRSYQGYTCLMQISTRDKDYIVDTLKL 306
M I +++ +EL + + +AID E+ ++ Y CL+QI+ +K ++D L
Sbjct: 1 MFICSTNDLSRFCTELLRDNPESVAIDTEFLRSFNDYYPKLCLLQIAYENKQCVIDALAE 60
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
DL L E+ + I KVFH D+ L F +FDT A S+ Y
Sbjct: 61 GIDLTPLQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIFDTQIAAMLCEYHENSVGY 120
Query: 367 --LLKHYCDVDSDKT-FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
L++ + V +K F+ DW RPL E ++YA D YL +Y ++ D+ + G+
Sbjct: 121 SKLVEQFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYLYKLYGILR-DI-LTSKGR 178
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIAR 482
LS + + C + + N + +A L Q+ R + +WR+R+AR
Sbjct: 179 ----LSWYMEEMD-CIV--DSVSDNYTTILESMECYADLTEQEANIARSVVEWRERVAR 230
Score = 47 (21.6 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 568 DSNNQQKYALRELYKWRDRIAR 589
D Q+ R + +WR+R+AR
Sbjct: 209 DLTEQEANIARSVVEWRERVAR 230
>TIGR_CMR|ECH_0300 [details] [associations]
symbol:ECH_0300 "putative ribonuclease D" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
RefSeq:YP_507121.1 ProteinModelPortal:Q2GHG2 STRING:Q2GHG2
GeneID:3928062 KEGG:ech:ECH_0300 PATRIC:20576105
HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
BioCyc:ECHA205920:GJNR-300-MONOMER Uniprot:Q2GHG2
Length = 387
Score = 209 (78.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 69/259 (26%), Positives = 125/259 (48%)
Query: 250 MMITEPEQVTQLVSELK--QQQEIAIDLEYHNYRS-YQGYTCLMQISTRDKDYIVDTLKL 306
M+I +++ +L ++L Q + IA+D E+ S Y CL+QI+ + +++D L
Sbjct: 1 MLIDTVKELERLCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAYGKEQFVIDVLAK 60
Query: 307 REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAY 366
DL VL + +++I+KVFH DI L F +FDT A F ++ Y
Sbjct: 61 DMDLSVLGHIFYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGY 120
Query: 367 --LLKHYCDVDSDK-TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGK 423
L++ + + DK + + +W RPL IQYA D YL +Y + +L A GK
Sbjct: 121 SKLVEQFLGISLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQILYNNLLDA--GK 178
Query: 424 QNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARD 483
L F N + ++ N+ + F S + ++ +R + +WR+R+A+
Sbjct: 179 ----LPWFLEEMN--NIVLQEVNCNDVCDIPDFGSD--MTKEEIIVVRSVIEWRERLAKF 230
Query: 484 KDESTGYVLPNHMLLQMAQ 502
+ + ++L N ++L + +
Sbjct: 231 FNLNREFILKNKVMLSLVR 249
>TIGR_CMR|SO_2580 [details] [associations]
symbol:SO_2580 "ribonuclease D" species:211586 "Shewanella
oneidensis MR-1" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0042780
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:NP_718166.1 ProteinModelPortal:Q8EE10
GeneID:1170282 KEGG:son:SO_2580 PATRIC:23524787
ProtClustDB:CLSK906783 Uniprot:Q8EE10
Length = 367
Score = 187 (70.9 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 69/299 (23%), Positives = 126/299 (42%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
+++ + LV++ +Q + +D E+ R+Y L+Q ++D + L DL
Sbjct: 5 VSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIAL-PDLS 63
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYL-LKH 370
+L + NI+K+ H D++ +FD+ A M L Y L
Sbjct: 64 AFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGH-GLGYAKLVE 122
Query: 371 YCDVDS-DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
C + DK DW RPL + + YA D YL +Y + L Q+ +
Sbjct: 123 TCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQT-----QDRLDW 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
+ + + + P E Y+ + + L +Q Y L+ L KWR A +D + G
Sbjct: 178 LYEEGERMTEGRLASPDA-ETAYLKVKNAFQLTEHQLAY-LKVLAKWRLEKALARDLALG 235
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL 548
+V+ +H L+ +A+ P+ + + + Q + H DI ++ A L + + V+ L
Sbjct: 236 FVIKDHGLIALAKKQPKSMSDLLKLNDLTEQEKRIHGKDILRVMQTADLSNPPELVDVL 294
>UNIPROTKB|Q9KQL4 [details] [associations]
symbol:rnd "Ribonuclease D" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 173 (66.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 84/348 (24%), Positives = 152/348 (43%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+ +D E+ R++ L+Q+ + ++D L +++ E+L D +++KV H
Sbjct: 33 VMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL-DEMTPFVELLQDTSVLKVLHACG 91
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLKHYCDVDSDKTFQLFDWRHRP 389
D++ Q FG M DT FL + A L++ V+ DK+ DW RP
Sbjct: 92 EDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAALVQDQLQVELDKSESRTDWLARP 151
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
L + ++YA D YLL +Y+ + ++ A L S ++ + K P E
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESELQVAK---RTKVSNP---E 205
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
Y++I + L ++ L+ L WR A ++D + +V+ LL +++ R +
Sbjct: 206 LAYLDI-KGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK--PVEKLQPSLD--GMK---KKQQQQ 562
+ P ++ H I A++ K L++ P E + P ++ G K K+ + +
Sbjct: 265 RMEEE-GVDPHAIRRHSSKIIAMV-KTALETPADAYPPE-IVPIMEYPGYKQLFKRLKDE 321
Query: 563 VSPPHDSNN------QQKYALRELYKW---RDRI-ARDKDESTGYVLP 600
V +++ K L +L W RDR AR D G+ LP
Sbjct: 322 VKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRLP 369
>TIGR_CMR|VC_1984 [details] [associations]
symbol:VC_1984 "ribonuclease D" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 173 (66.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 84/348 (24%), Positives = 152/348 (43%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 330
+ +D E+ R++ L+Q+ + ++D L +++ E+L D +++KV H
Sbjct: 33 VMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL-DEMTPFVELLQDTSVLKVLHACG 91
Query: 331 SDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLKHYCDVDSDKTFQLFDWRHRP 389
D++ Q FG M DT FL + A L++ V+ DK+ DW RP
Sbjct: 92 EDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAALVQDQLQVELDKSESRTDWLARP 151
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
L + ++YA D YLL +Y+ + ++ A L S ++ + K P E
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESELQVAK---RTKVSNP---E 205
Query: 450 EGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
Y++I + L ++ L+ L WR A ++D + +V+ LL +++ R +
Sbjct: 206 LAYLDI-KGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPK 264
Query: 510 GIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK--PVEKLQPSLD--GMK---KKQQQQ 562
+ P ++ H I A++ K L++ P E + P ++ G K K+ + +
Sbjct: 265 RMEEE-GVDPHAIRRHSSKIIAMV-KTALETPADAYPPE-IVPIMEYPGYKQLFKRLKDE 321
Query: 563 VSPPHDSNN------QQKYALRELYKW---RDRI-ARDKDESTGYVLP 600
V +++ K L +L W RDR AR D G+ LP
Sbjct: 322 VKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRLP 369
>UNIPROTKB|O07183 [details] [associations]
symbol:MT2755 "CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842580 GO:GO:0000166 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 KO:K03684
EMBL:AL123456 PIR:D70528 RefSeq:NP_217197.1 RefSeq:NP_337256.1
RefSeq:YP_006516125.1 SMR:O07183 EnsemblBacteria:EBMYCT00000002560
EnsemblBacteria:EBMYCT00000070259 GeneID:13319408 GeneID:887708
GeneID:925540 KEGG:mtc:MT2755 KEGG:mtu:Rv2681 KEGG:mtv:RVBD_2681
PATRIC:18127796 TubercuList:Rv2681 HOGENOM:HOG000243390 OMA:ADWSTRP
ProtClustDB:CLSK792001 Uniprot:O07183
Length = 438
Score = 171 (65.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 70/285 (24%), Positives = 123/285 (43%)
Query: 237 EPKQAL-PLSDTPLMMITEPEQVTQLVSEL--KQQQEIAIDLEYHNYRSYQGYTCLMQIS 293
EP L P P + +T E +EL + + A+D E + Y G L+QI
Sbjct: 19 EPTPLLRPAGGIPDLCVTVGEIAA--AAELLDRGRGPFAVDAERASGFRYSGRAYLIQIR 76
Query: 294 TRDKDYI-VDTLKLRED-LEVLN---EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 348
+ + +D + D L VL EVL+ + H AD D+ L + G+ ++
Sbjct: 77 RAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWI--LHSADQDLPCLA-EVGMRPPALY 133
Query: 349 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 408
DT A + R +LA +++ + K DW RPLP + YA D L+ +
Sbjct: 134 DTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIEL 193
Query: 409 YDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKY 468
+ L A GK + F + R+ + + ++ + H + + +
Sbjct: 194 RAAISRVL--AEQGKTDWAAQEFEHLRSF-ESRPPPAAARQDRWRRTSGIHKVHDRRGLA 250
Query: 469 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 513
A+REL+ RDRIA+ +D + +LP+ ++ A + P+ + + A
Sbjct: 251 AVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVA 295
>TIGR_CMR|SPO_0083 [details] [associations]
symbol:SPO_0083 "exonuclease, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISS] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 KO:K03684 HOGENOM:HOG000003834
OMA:CTKIASR ProtClustDB:CLSK863722 RefSeq:YP_165357.1
ProteinModelPortal:Q5LWM8 GeneID:3193828 KEGG:sil:SPO0083
PATRIC:23373403 Uniprot:Q5LWM8
Length = 204
Score = 133 (51.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 46/164 (28%), Positives = 72/164 (43%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
+AID E ++ C++Q+S D + +IV K + L +L + ++K+FH
Sbjct: 20 VAIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAAPNLCAMLENPEVLKLFHFG 79
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFLPM--PRQSLAYLLKHYCDVDSDKTFQLFDWRH 387
DI L FG ++ T A + + R L L + VD K Q+ DW
Sbjct: 80 RFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLCQELLGVDISKQQQMSDWGA 139
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
L E + YA +D YL + + LD A G+ +L S F
Sbjct: 140 ETLSEAQLDYAASDVLYLHRLREA--LDGRLAREGRADLAQSCF 181
>GENEDB_PFALCIPARUM|MAL8P1.35 [details] [associations]
symbol:MAL8P1.35 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 EMBL:AL844507
RefSeq:XP_001349283.1 ProteinModelPortal:Q8IB75
EnsemblProtists:MAL8P1.35:mRNA GeneID:2655376 KEGG:pfa:MAL8P1.35
EuPathDB:PlasmoDB:PF3D7_0824100 HOGENOM:HOG000282618
ProtClustDB:CLSZ2433017 Uniprot:Q8IB75
Length = 406
Score = 136 (52.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 72/300 (24%), Positives = 120/300 (40%)
Query: 178 VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEE 237
+K N Y L + + +++ +L Y F + EYE Y + KC
Sbjct: 14 IKYKNFYHNLLNIEFFKHFKSIEKFGLLKRFYST--KF-NSKEYEK--YDRNNNDKKCII 68
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK 297
+ +S + +I ++ + E+ + + IAID E N Y G CLMQ+ K
Sbjct: 69 LRNTESVSKD-IKIIENEKECEEAAEEINRSEIIAIDFEGTNLGRY-GKVCLMQVYVEKK 126
Query: 298 D------------YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+ YI D LK ++ +++ +K +K+ H D L G+ +
Sbjct: 127 NMNEQSDNILQKYYIFDLLKTSV-IKSAQKIIENKKTLKLIHDCREDSSALYNQLGMKLE 185
Query: 346 GMFDTHQACKFLPMPRQ--------SLAYLLKHYCDV-DSDKTF---QLFD----WRHRP 389
++DT +A L M +Q S A L+ Y + D+ +F +++ W RP
Sbjct: 186 NVYDTSRA-HLLLMEKQKKNDIYQVSFAQLINDYLGINDASLSFIKKEMYKNEKIWETRP 244
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
L +I YA + YL +Y L + LVL N C L YE + N+
Sbjct: 245 LSNISIIYALKNVKYLYKLYKIFDKLLP------KKLVLEKSKEFVNYCYLNYEYKLPND 298
>UNIPROTKB|Q8IB75 [details] [associations]
symbol:MAL8P1.35 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:AL844507 RefSeq:XP_001349283.1
ProteinModelPortal:Q8IB75 EnsemblProtists:MAL8P1.35:mRNA
GeneID:2655376 KEGG:pfa:MAL8P1.35 EuPathDB:PlasmoDB:PF3D7_0824100
HOGENOM:HOG000282618 ProtClustDB:CLSZ2433017 Uniprot:Q8IB75
Length = 406
Score = 136 (52.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 72/300 (24%), Positives = 120/300 (40%)
Query: 178 VKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEE 237
+K N Y L + + +++ +L Y F + EYE Y + KC
Sbjct: 14 IKYKNFYHNLLNIEFFKHFKSIEKFGLLKRFYST--KF-NSKEYEK--YDRNNNDKKCII 68
Query: 238 PKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK 297
+ +S + +I ++ + E+ + + IAID E N Y G CLMQ+ K
Sbjct: 69 LRNTESVSKD-IKIIENEKECEEAAEEINRSEIIAIDFEGTNLGRY-GKVCLMQVYVEKK 126
Query: 298 D------------YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+ YI D LK ++ +++ +K +K+ H D L G+ +
Sbjct: 127 NMNEQSDNILQKYYIFDLLKTSV-IKSAQKIIENKKTLKLIHDCREDSSALYNQLGMKLE 185
Query: 346 GMFDTHQACKFLPMPRQ--------SLAYLLKHYCDV-DSDKTF---QLFD----WRHRP 389
++DT +A L M +Q S A L+ Y + D+ +F +++ W RP
Sbjct: 186 NVYDTSRA-HLLLMEKQKKNDIYQVSFAQLINDYLGINDASLSFIKKEMYKNEKIWETRP 244
Query: 390 LPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
L +I YA + YL +Y L + LVL N C L YE + N+
Sbjct: 245 LSNISIIYALKNVKYLYKLYKIFDKLLP------KKLVLEKSKEFVNYCYLNYEYKLPND 298
>UNIPROTKB|E1BWV5 [details] [associations]
symbol:EXD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GeneTree:ENSGT00390000006843 InterPro:IPR002782 Pfam:PF01927
OMA:QENWADH EMBL:AADN02026991 EMBL:AADN02026982 EMBL:AADN02026983
EMBL:AADN02026965 EMBL:AADN02026966 EMBL:AADN02026967
EMBL:AADN02026968 EMBL:AADN02026969 EMBL:AADN02026970
EMBL:AADN02026971 EMBL:AADN02026972 EMBL:AADN02026973
EMBL:AADN02026974 EMBL:AADN02026975 EMBL:AADN02026976
EMBL:AADN02026977 EMBL:AADN02026978 EMBL:AADN02026979
EMBL:AADN02026980 EMBL:AADN02026981 EMBL:AADN02026984
EMBL:AADN02026985 EMBL:AADN02026986 EMBL:AADN02026987
EMBL:AADN02026988 EMBL:AADN02026989 EMBL:AADN02026990
EMBL:AADN02026992 EMBL:AADN02026993 EMBL:AADN02026994
EMBL:AADN02039946 IPI:IPI00573845 ProteinModelPortal:E1BWV5
Ensembl:ENSGALT00000014570 Uniprot:E1BWV5
Length = 725
Score = 110 (43.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 344 VVGMFDTHQACKF--LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
+V + Q+C+ L P + L+ L++H DKT Q+ +W RPL E I YA +D
Sbjct: 494 LVDVLSPEQSCEDGGLRQPEKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASD 553
Query: 402 THYLLYVYD 410
+ LL VY+
Sbjct: 554 AYCLLEVYE 562
Score = 75 (31.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 27/108 (25%), Positives = 50/108 (46%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSE-LKQQQEIAIDLEYHNYRSYQGY--TCLMQISTRDKD 298
LP+ + ++ E++ Q + LK Q + ID+E+ G L+Q++ RD+
Sbjct: 361 LPIPRANIRLLQNWEEMMQCYEKVLKPGQIVGIDMEWRPSFGMVGKPRVSLLQLAVRDEV 420
Query: 299 YIVDTLKLREDLEVLNE----------VLTDKNIVKVFHGADSDIKWL 336
+++D +L E EV E + +D I K+ +G D+ L
Sbjct: 421 FLLDLPRLLEQAEVKGEKEKLPHFIQRLYSDATITKLGYGMSGDLSSL 468
>TIGR_CMR|ECH_1011 [details] [associations]
symbol:ECH_1011 "3'-5' exonuclease family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_507797.1 ProteinModelPortal:Q2GFI6 STRING:Q2GFI6
GeneID:3927400 KEGG:ech:ECH_1011 PATRIC:20577396
BioCyc:ECHA205920:GJNR-1014-MONOMER Uniprot:Q2GFI6
Length = 204
Score = 123 (48.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 45/174 (25%), Positives = 76/174 (43%)
Query: 261 LVSELKQQQEIAIDLEYHNYRSYQGYTCLMQI-STRDKDYIVDTLKLREDLEVLNEVLTD 319
L + LK + +A+D E + C++Q+ + + ++V L + +++ VL+D
Sbjct: 10 LPNGLKFENTVAVDTETMGLVCRRDKLCVVQLCDSNGETHLVKFLGSYQAPNLVS-VLSD 68
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPM--PRQSLAYLLKHYCDVDSD 377
+I K+FH A DI ++ G++ + T A K + L L +V +
Sbjct: 69 SSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKELCYELLNVKLN 128
Query: 378 KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
K Q DW L + YA +D YL + + KLD KQ L S F
Sbjct: 129 KMQQSSDWGKETLTSEQLNYAASDVIYLHALKN--KLDAMLQRENKQELAASCF 180
>TIGR_CMR|APH_1098 [details] [associations]
symbol:APH_1098 "3''-5'' exonuclease family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_505646.1 ProteinModelPortal:Q2GJ05 STRING:Q2GJ05
GeneID:3930416 KEGG:aph:APH_1098 PATRIC:20950954
BioCyc:APHA212042:GHPM-1104-MONOMER Uniprot:Q2GJ05
Length = 204
Score = 122 (48.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 42/165 (25%), Positives = 68/165 (41%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV--LNEVLTDKNIVKVFHG 328
+A+D E + CL+Q+S + D +K D L +V++D ++K+FH
Sbjct: 20 VAVDTETMGLVCRRDRVCLVQLSAGNGD--AHLVKFDGDYSAPNLRKVISDPGVLKIFHF 77
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPM--PRQSLAYLLKHYCDVDSDKTFQLFDWR 386
A D+ ++ FG++ + T A + + L L V +K Q DW
Sbjct: 78 ARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYELLGVKINKAQQSSDWG 137
Query: 387 HRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTF 431
L + YA D YL + KLD+ KQ L + F
Sbjct: 138 REVLTAEQLSYAAADVIYLHAIKK--KLDMMLEREEKQELAEACF 180
>TIGR_CMR|SO_1153 [details] [associations]
symbol:SO_1153 "exonuclease, putative" species:211586
"Shewanella oneidensis MR-1" [GO:0005622 "intracellular"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
SUPFAM:SSF53098 GO:GO:0008408 RefSeq:NP_716778.2
ProteinModelPortal:Q8EHR4 GeneID:1168982 KEGG:son:SO_1153
PATRIC:23521944 HOGENOM:HOG000288499 OMA:KEMGTRQ
ProtClustDB:CLSK906115 Uniprot:Q8EHR4
Length = 291
Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
Identities = 44/166 (26%), Positives = 75/166 (45%)
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYH-NYR-SYQGYTCLMQISTRDKDY 299
L L + ++T PE + + +L ++ + D E ++ S Q L+Q++T D Y
Sbjct: 83 LSLESRHVELVT-PEYLATALQQLSRESVLGFDTETRASFEPSVQHPLSLVQLATADTCY 141
Query: 300 IVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL-- 357
+ L + L +L ++ I+KV G D + L++D+ + V D + A L
Sbjct: 142 LFQQAVLGDAFAQLKPLLENEQILKVGIGLRGDGQALKRDWNILVSPRLDLNWAMAQLGA 201
Query: 358 --PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 401
M + L +L H +D K L +W+ PL IQYA D
Sbjct: 202 GKEMGTRQLVAVLLHQ-RIDKPKKITLSNWQQVPLSPAQIQYAALD 246
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1006 913 0.00089 122 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 39
No. of states in DFA: 624 (66 KB)
Total size of DFA: 464 KB (2217 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 92.10u 0.11s 92.21t Elapsed: 00:00:42
Total cpu time: 92.11u 0.11s 92.22t Elapsed: 00:00:44
Start: Thu Aug 15 11:38:26 2013 End: Thu Aug 15 11:39:10 2013