RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7894
(1006 letters)
>gnl|CDD|99850 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease domain of yeast
Rrp6p, human polymyositis/scleroderma autoantigen
100kDa, and similar proteins. Yeast Rrp6p and its human
homolog, the polymyositis/scleroderma autoantigen 100kDa
(PM/Scl-100), are exosome-associated proteins involved
in the degradation and processing of precursors to
stable RNAs. Both proteins contain a DEDDy-type
DnaQ-like 3'-5' exonuclease domain possessing three
conserved sequence motifs termed ExoI, ExoII and ExoIII,
with a specific YX(3)D pattern at ExoIII. The motifs are
clustered around the active site and contain four
conserved acidic residues that serve as ligands for the
two metal ions required for catalysis. PM/Scl-100, an
autoantigen present in the nucleolar compartment of the
cell, reacts with autoantibodies produced by about 50%
of patients with polymyositis-scleroderma overlap
syndrome.
Length = 192
Score = 331 bits (852), Expect = e-107
Identities = 118/192 (61%), Positives = 149/192 (77%), Gaps = 1/192 (0%)
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
+TPL + E++ +LV +LK +EIA+DLE+H+YRSY G+TCLMQISTR++DYIVDTL
Sbjct: 1 DETPLTFVDTEEKLEELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREEDYIVDTL 60
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
KLR+D+ +LNEV TD NI+KVFHGADSDI WLQ+DFGLYVV +FDT QA + L +PR SL
Sbjct: 61 KLRDDMHILNEVFTDPNILKVFHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLPRHSL 120
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-SAAAHGK 423
AYLL+ YC+VD+DK +QL DWR RPLPE I+YAR DTHYLLY+YD ++ +L A
Sbjct: 121 AYLLQKYCNVDADKKYQLADWRIRPLPEEMIKYAREDTHYLLYIYDRLRNELLERANALA 180
Query: 424 QNLVLSTFTNSR 435
NL+ S SR
Sbjct: 181 PNLLESVLNCSR 192
>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and
biogenesis].
Length = 361
Score = 195 bits (499), Expect = 3e-55
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 9/287 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT + + + L+ + IAID E+ R+Y CL+QIS + ++D L DL
Sbjct: 1 ITTGDLLAAACALLRGSKAIAIDTEFMRLRTYYPRLCLIQISDGEGASLIDPLAGILDLP 60
Query: 312 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKH 370
L +L D N+VK+FH A D++ L FGL +FDT A K LA L++
Sbjct: 61 PLVALLADPNVVKIFHAARFDLEVLLNLFGLLPTPLFDTQIAAKLAGFGTSHGLADLVEE 120
Query: 371 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 430
V+ DK+ Q DW RPL E ++YA D YLL +YD + +L+ G+
Sbjct: 121 LLGVELDKSEQRSDWLARPLSEAQLEYAAADVEYLLPLYDKLTEELARE--GRLEWAEDE 178
Query: 431 FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 490
F + + V E+ + I +H L+ ++ LREL WR+R AR++D + +
Sbjct: 179 FR----LLPTRRTYKVLPEDAWREIKIAH-SLDPRELAVLRELAAWREREARERDLARNF 233
Query: 491 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537
VL + L ++A+ P++++ +P+ + H + A++ A
Sbjct: 234 VLKDEALWELARYTPKNLKE-LDALGLIPKERRRHGKLLLALLANAL 279
Score = 49.2 bits (118), Expect = 7e-06
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 524 EHVLDIHAIILKARL-------------QSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSN 570
E++L ++ L L + L D ++ + P
Sbjct: 153 EYLLPLYDK-LTEELAREGRLEWAEDEFRLLPTRRTYKVLPEDAWREIKIAHSLDP---- 207
Query: 571 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVK 630
++ LREL WR+R AR++D + +VL + L ++A+ P++++ +P+ +
Sbjct: 208 -RELAVLRELAAWREREARERDLARNFVLKDEALWELARYTPKNLKE-LDALGLIPKERR 265
Query: 631 EHVLDIHAIILKARLQP---LTKPVEKLQPS 658
H + A++ A P L P +L P
Sbjct: 266 RHGKLLLALLANALASPESDLPPPPGRLAPP 296
>gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease
D and similar proteins. Ribonuclease (RNase) D is a
bacterial enzyme involved in the maturation of small
stable RNAs and the 3' maturation of tRNA. It contains a
DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing
three conserved sequence motifs termed ExoI, ExoII and
ExoIII, with a specific YX(3)D pattern at ExoIII. These
motifs are clustered around the active site and contain
four conserved acidic residues that serve as ligands for
the two metal ions required for catalysis. In vivo,
RNase D only becomes essential upon removal of other
ribonucleases. Eukaryotic RNase D homologs include yeast
Rrp6p, human PM/Scl-100, and the Drosophila melanogaster
egalitarian protein.
Length = 178
Score = 182 bits (464), Expect = 7e-53
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
++ L L IA+D E+ +Y CL+QIST + Y++D L + DL L E+
Sbjct: 1 ELEDLCERLASAGVIAVDTEFMRLNTYYPRLCLIQISTGGEVYLIDPLAI-GDLSPLKEL 59
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLKHYCDVD 375
L D NIVKVFH A D++ L++DFG+ +FDT A + L + LA L++ V+
Sbjct: 60 LADPNIVKVFHAAREDLELLKRDFGILPQNLFDTQIAARLLGLGDSVGLAALVEELLGVE 119
Query: 376 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 419
DK Q DW RPL + ++YA D YLL +Y+ +K +L
Sbjct: 120 LDKGEQRSDWSKRPLTDEQLEYAALDVRYLLPLYEKLKEELEEE 163
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease. This domain is
responsible for the 3'-5' exonuclease proofreading
activity of E. coli DNA polymerase I (polI) and other
enzymes, it catalyzes the hydrolysis of unpaired or
mismatched nucleotides. This domain consists of the
amino-terminal half of the Klenow fragment in E. coli
polI it is also found in the Werner syndrome helicase
(WRN), focus forming activity 1 protein (FFA-1) and
ribonuclease D (RNase D). Werner syndrome is a human
genetic disorder causing premature aging; the WRN
protein has helicase activity in the 3'-5' direction.
The FFA-1 protein is required for formation of a
replication foci and also has helicase activity; it is a
homologue of the WRN protein. RNase D is a 3'-5'
exonuclease involved in tRNA processing. Also found in
this family is the autoantigen PM/Scl thought to be
involved in polymyositis-scleroderma overlap syndrome.
Length = 172
Score = 175 bits (447), Expect = 9e-51
Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGY--TCLMQISTRDKDYIVDTLKLRE 308
++T +++ L+ EL + +A+D E + +Y CL+QIST + YI+D L L +
Sbjct: 3 IVTTEDELEDLIEELLNAKVVAVDTETTSLDTYSYTLVGCLIQISTGEGAYIIDPLALGD 62
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYL 367
DLE L +L D NI KV H A D++ L +DFG+ + +FDT A L PR SL L
Sbjct: 63 DLEGLKRLLEDPNITKVGHNAKFDLEVLARDFGIKLENLFDTMLAAYLLGYPRSHSLDDL 122
Query: 368 LKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
+ Y V+ DK+ Q DWR RPL E ++YA D YLL +YD ++ +L
Sbjct: 123 AEKYLGVELDKSEQCADWRARPLSEEQLRYAAEDADYLLRLYDKLRKEL 171
>gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D,
WRN, and similar proteins. The RNase D-like group is
composed of RNase D, WRN, and similar proteins. They
contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease
domain that contains three conserved sequence motifs
termed ExoI, ExoII and ExoIII, with a specific YX(3)D
pattern at ExoIII. These motifs are clustered around the
active site and contain four conserved acidic residues
that serve as ligands for the two metal ions required
for catalysis. RNase D is involved in the 3'-end
processing of tRNA precursors. RNase D-like proteins in
eukaryotes include yeast Rrp6p, human PM/Scl-100 and
Drosophila melanogaster egalitarian (Egl) protein. WRN
is a unique DNA helicase possessing exonuclease
activity. Mutation in the WRN gene is implicated in
Werner syndrome, a disease associated with premature
aging and increased predisposition to cancer. Yeast
Rrp6p and the human Polymyositis/scleroderma autoantigen
100kDa (PM/Scl-100) are exosome-associated proteins
involved in the degradation and processing of precursors
to stable RNAs. Egl is a component of an mRNA-binding
complex which is required for oocyte specification. The
Egl subfamily does not possess a completely conserved
YX(3)D pattern at the ExoIII motif.
Length = 161
Score = 157 bits (399), Expect = 2e-44
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 270 EIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
IA D+E+ R Y G L+Q+ + K Y+ D L L D + L +L + +IVK HG
Sbjct: 15 VIAFDMEWPPGRRYYGEVALIQLCVSEEKCYLFDPLSLSVDWQGLKMLLENPSIVKALHG 74
Query: 329 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRH 387
+ D+ L +DFG + +FDT A +P R SLA L++H+ DK+ DW +
Sbjct: 75 IEGDLWKLLRDFGEKLQRLFDTTIAANLKGLPERWSLASLVEHFLGKTLDKSISCADWSY 134
Query: 388 RPLPEPAIQYARTDTHYLLYVYDCMK 413
RPL E YA D + LL +Y ++
Sbjct: 135 RPLTEDQKLYAAADVYALLIIYTKLR 160
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease. 3\' -5' exonuclease
proofreading domain present in DNA polymerase I, Werner
syndrome helicase, RNase D and other enzymes.
Length = 172
Score = 140 bits (354), Expect = 4e-38
Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 7/171 (4%)
Query: 251 MITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQIS-TRDKDYIVDTLKLRE 308
++T+ E + +L+ +L+ E+A+D E SY G L+QIS T + +I+D L L +
Sbjct: 3 VVTDSETLEELLEKLRAAGGEVALDTETTGLDSYSGKLVLIQISVTGEGAFIIDPLALGD 62
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS---LA 365
DLE+L ++L D+ I KV H A D+ L + FG+ + +FDT A +L + S LA
Sbjct: 63 DLEILKDLLEDETITKVGHNAKFDLHVLAR-FGIELENIFDTMLA-AYLLLGGPSKHGLA 120
Query: 366 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
LL Y V+ DK Q DW RPL E ++YA D LL +Y+ ++ +L
Sbjct: 121 TLLLGYLGVELDKEEQKSDWGARPLSEEQLEYAAEDADALLRLYEKLEKEL 171
>gnl|CDD|130455 TIGR01388, rnd, ribonuclease D. This model describes ribonuclease
D, a 3'-exonuclease shown to act on tRNA both in vitro
and when overexpressed in vivo. Trusted members of this
family are restricted to the Proteobacteria; Aquifex,
Mycobacterial, and eukaryotic homologs are not
full-length homologs. Ribonuclease D is not essential in
E. coli and is deleterious when overexpressed. Its
precise biological role is still unknown [Transcription,
RNA processing].
Length = 367
Score = 124 bits (312), Expect = 2e-30
Identities = 79/307 (25%), Positives = 140/307 (45%), Gaps = 15/307 (4%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
IT +++ + ++ +A+D E+ R++ L+Q++ ++ ++D L + D
Sbjct: 1 WITTDDELATVCEAVRTFPFVALDTEFVRERTFWPQLGLIQVADGEQLALIDPLVI-IDW 59
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L E+L D+++VKV H A D++ FG +FDT A F A L++
Sbjct: 60 SPLKELLRDESVVKVLHAASEDLEVFLNLFGELPQPLFDTQIAAAFCGFGMSMGYAKLVQ 119
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
V+ DK+ DW RPL + ++YA D YLL +Y KL G+ +
Sbjct: 120 EVLGVELDKSESRTDWLARPLTDAQLEYAAADVTYLLPLYA--KLMERLEESGRLAWLEE 177
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
T + + V E+ + +I ++ L QQ L+ L WR+R AR++D
Sbjct: 178 ECTLLTD----RRTYVVNPEDAWRDI-KNAWQLRPQQLAVLQALAAWREREARERDLPRN 232
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKL- 548
+VL L ++A+ P ++ A P +++H + A++ A L P + L
Sbjct: 233 FVLKEEALWELARQAPGNL-TELASLGPKGSEIRKHGDTLLALVKTA----LALPEDALP 287
Query: 549 QPSLDGM 555
Q L+ M
Sbjct: 288 QAPLNLM 294
Score = 42.1 bits (99), Expect = 0.001
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
QQ L+ L WR+R AR++D +VL L ++A+ P ++ A P +++
Sbjct: 208 QQLAVLQALAAWREREARERDLPRNFVLKEEALWELARQAPGNL-TELASLGPKGSEIRK 266
Query: 632 HVLDIHAIILKARLQPLTKPVEKL-QPSLDGM 662
H + A++ A L P + L Q L+ M
Sbjct: 267 HGDTLLALVKTA----LALPEDALPQAPLNLM 294
>gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional.
Length = 373
Score = 85.1 bits (211), Expect = 2e-17
Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 15/259 (5%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + + + IA+D E+ R+Y L+Q+ ++ ++D L + D
Sbjct: 5 MITTDDALASVCEAARAFPAIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLGIT-DW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-LAYLLK 369
+L D + K H D++ FG + DT F P A +++
Sbjct: 64 SPFKALLRDPQVTKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLSCGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + KL A G L
Sbjct: 124 EYTGVTLDKSESRTDWLARPLSERQCEYAAADVFYLLPIAA--KLMAETEAAGWLPAALD 181
Query: 430 TFTNSRNICKLKYE--KPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDE 486
R +C+ + E P EE Y +I ++A L +Q L+ L WR R AR++D
Sbjct: 182 ---ECRLLCQRRQEVLAP---EEAYRDI--TNAWQLRTRQLACLQLLADWRLRKARERDL 233
Query: 487 STGYVLPNHMLLQMAQSIP 505
+ +V+ L Q+A+ +P
Sbjct: 234 AVNFVVREEHLWQVARYMP 252
>gnl|CDD|99851 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease domain of Drosophila
Egalitarian (Egl) and similar proteins. The Egalitarian
(Egl) protein subfamily is composed of Drosophila Egl
and similar proteins. Egl is a component of an
mRNA-binding complex which is required for oocyte
specification. Egl contains a DEDDy-type DnaQ-like 3'-5'
exonuclease domain possessing three conserved sequence
motifs termed ExoI, ExoII and ExoIII, with a specific
YX(3)D pattern at ExoIII. The motifs are clustered
around the active site and contain four conserved acidic
residues that serve as ligands for the two metal ions
required for catalysis. The conservation of this
subfamily throughout eukaryotes suggests that its
members may be part of ancient RNA processing complexes
that are likely to participate in the regulated
processing of specific mRNAs. Some members of this
subfamily do not have a completely conserved YX(3)D
pattern at the ExoIII motif.
Length = 197
Score = 76.2 bits (188), Expect = 1e-15
Identities = 56/181 (30%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD-YIVDTLKLREDLEVLN---- 314
+ + LK+Q+ I +D E N +G CL+QI+TR Y+ D LKL V
Sbjct: 2 EAIIHLKKQKVIGLDCEGVNL-GRKGKLCLVQIATRTGQIYLFDILKL--GSIVFINGLK 58
Query: 315 EVLTDKNIVKVFHGA--DSDIKWLQKDFGLYVVGMFDTHQA---------CKFLPMPRQS 363
++L K I+KV H DSD L +G+ + +FDT A F P S
Sbjct: 59 DILESKKILKVIHDCRRDSDA--LYHQYGIKLNNVFDTQVADALLQEQETGGFNPDRVIS 116
Query: 364 LAYLLKHYCDVDSDKTFQLFD--------WRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 415
L LL Y + + W RPL E I+YA D LL +Y M
Sbjct: 117 LVQLLDKYLYISISLKEDVKKLMREDPKFWALRPLTEDMIRYAALDVLCLLPLYYAMLDA 176
Query: 416 L 416
L
Sbjct: 177 L 177
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of
Caenorhabditis elegans mut-7 and similar proteins. The
mut-7 subfamily is composed of Caenorhabditis elegans
mut-7 and similar proteins found in plants and
metazoans. Mut-7 is implicated in posttranscriptional
gene silencing. It contains a DEDDy-type DnaQ-like 3'-5'
exonuclease domain possessing three conserved sequence
motifs, termed ExoI, ExoII and ExoIII, with a specific
YX(3)D pattern at ExoIII. These motifs are clustered
around the active site and contain four conserved acidic
residues that serve as ligands for the two metal ions
required for catalysis.
Length = 193
Score = 73.9 bits (182), Expect = 7e-15
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 251 MITEPEQVTQLVSE--LKQQQEIAIDLEYHNYRSYQGYT--CLMQISTRDKDYIVDTLKL 306
++ E++ L+ L+ + + ID E+ ++Q++T D+ +++D L L
Sbjct: 3 IVDSEEELEALLLALSLEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDEVFLLDLLAL 62
Query: 307 REDL-----EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY------VVGMFDTHQACK 355
+L + D +++K+ G D+K L + V + D K
Sbjct: 63 ENLESEDWDRLLKRLFEDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAK 122
Query: 356 ------------FLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
LP + LA L++ DK+ Q +W RPL E I YA D +
Sbjct: 123 ELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLDKSEQCSNWERRPLREEQILYAALDAY 182
Query: 404 YLLYVYD 410
LL V+D
Sbjct: 183 CLLEVFD 189
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar
proteins. WRN is a unique RecQ DNA helicase exhibiting
an exonuclease activity. It contains a DEDDy-type
DnaQ-like 3'-5' exonuclease domain possessing three
conserved sequence motifs termed ExoI, ExoII and ExoIII,
with a specific YX(3)D pattern at ExoIII. These motifs
are clustered around the active site and contain four
conserved acidic residues that serve as ligands for the
two metal ions required for catalysis. Mutations in the
WRN gene cause Werner syndrome, an autosomal recessive
disorder associated with premature aging and increased
susceptibility to cancer and type II diabetes. WRN
interacts with key proteins involved in DNA replication,
recombination, and repair. It is believed to maintain
genomic stability and life span by participating in DNA
processes. WRN is stimulated by Ku70/80, an important
regulator of genomic stability.
Length = 170
Score = 73.0 bits (180), Expect = 8e-15
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 252 ITEPEQVTQLVSELKQQQE-IAIDLEY-HNYRSYQGY-TCLMQISTRDKDYIVDTLKLRE 308
+ + V EL +++ + D E+ ++R + L+Q++T + + + +
Sbjct: 1 TDSAQDAEEAVKELLGKEKVVGFDTEWRPSFRKGKRNKVALLQLATESRCLLFQLAHMDK 60
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK--FLPMPRQSLAY 366
L ++L D +I+KV G D + L +DFG+ V G+ D K SLA
Sbjct: 61 LPPSLKQLLEDPSILKVGVGIKGDARKLARDFGIEVRGVVDLSHLAKRVGPRRKLVSLAR 120
Query: 367 LLKHY--CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413
L++ + K + +W RPL + I YA TD + L +Y +
Sbjct: 121 LVEEVLGLPLSKPKKVRCSNWEARPLSKEQILYAATDAYASLELYRKLL 169
>gnl|CDD|201312 pfam00570, HRDC, HRDC domain. The HRDC (Helicase and RNase D
C-terminal) domain has a putative role in nucleic acid
binding. Mutations in the HRDC domain cause human
disease. It is interesting to note that the RecQ
helicase in Deinococcus radiodurans has three tandem
HRDC domains.
Length = 68
Score = 69.1 bits (170), Expect = 1e-14
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 466 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 525
Q L+ L +WRD +AR++D + + LL++A+ +PR ++ + P+ ++ +
Sbjct: 1 QLALLKALREWRDELAREEDVPPYVIFSDATLLEIAEKLPRTLEELLRIPGVGPRKLERY 60
Query: 526 VLDIHAII 533
+I II
Sbjct: 61 GEEILEII 68
Score = 69.1 bits (170), Expect = 1e-14
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 573 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 632
Q L+ L +WRD +AR++D + + LL++A+ +PR ++ + P+ ++ +
Sbjct: 1 QLALLKALREWRDELAREEDVPPYVIFSDATLLEIAEKLPRTLEELLRIPGVGPRKLERY 60
Query: 633 VLDIHAII 640
+I II
Sbjct: 61 GEEILEII 68
>gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal. Hypothetical
role in nucleic acid binding. Mutations in the HRDC
domain cause human disease.
Length = 81
Score = 69.6 bits (171), Expect = 1e-14
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
+Q LR L +WRD IAR +D +VLP+ L++MA ++P ++ + A +
Sbjct: 1 RERQLRLLRRLRQWRDEIARREDVPPYFVLPDETLIKMAAALPTNVSELLAIDGVGEEKA 60
Query: 630 KEHVLDIHAIILKARLQPLTK 650
+ + D+ A+I +A P
Sbjct: 61 RRYGKDLLAVIQEASDSPSEA 81
Score = 68.5 bits (168), Expect = 3e-14
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
+Q LR L +WRD IAR +D +VLP+ L++MA ++P ++ + A +
Sbjct: 1 RERQLRLLRRLRQWRDEIARREDVPPYFVLPDETLIKMAAALPTNVSELLAIDGVGEEKA 60
Query: 523 KEHVLDIHAIILKARLQSLTK 543
+ + D+ A+I +A
Sbjct: 61 RRYGKDLLAVIQEASDSPSEA 81
>gnl|CDD|176656 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' exonuclease domain
of family-A DNA polymerases, RNase D, WRN, and similar
proteins. DEDDy exonucleases, part of the DnaQ-like (or
DEDD) exonuclease superfamily, catalyze the excision of
nucleoside monophosphates at the DNA or RNA termini in
the 3'-5' direction. They contain four invariant acidic
residues in three conserved sequence motifs termed ExoI,
ExoII and ExoIII. DEDDy exonucleases are classified as
such because of the presence of a specific YX(3)D
pattern at ExoIII. The four conserved acidic residues
serve as ligands for the two metal ions required for
catalysis. This family of DEDDy exonucleases includes
the proofreading domains of family A DNA polymerases, as
well as RNases such as RNase D and yeast Rrp6p. The
Egalitarian (Egl) and Bacillus-like DNA Polymerase I
subfamilies do not possess a completely conserved YX(3)D
pattern at the ExoIII motif. In addition, the
Bacillus-like DNA polymerase I subfamily has inactive
3'-5' exonuclease domains which do not possess the
metal-binding residues necessary for activity.
Length = 150
Score = 58.0 bits (140), Expect = 7e-10
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 5/144 (3%)
Query: 271 IAIDLEYHNYRSYQGYTCLMQIS-TRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 329
A D E + + L+Q++ ++ LE+L +L D+ +KV
Sbjct: 2 FAFDTETDSLDNISANLVLIQLAIEPGVAALIPVAHDYLALELLKPLLEDEKALKVGQNL 61
Query: 330 DSDIKWLQKDFGLYVVGMFDTHQACKFL--PMPRQSLAYLLKHYCDV--DSDKTFQLFDW 385
D L F FDT L R + L++ + ++ W
Sbjct: 62 KYDRGILLNYFIELRGIAFDTMLEAYILNSVAGRWDMDSLVERWLGHKLIKFESIAGKLW 121
Query: 386 RHRPLPEPAIQYARTDTHYLLYVY 409
++PL E +YA D L ++
Sbjct: 122 FNQPLTEEQGRYAAEDADVTLQIH 145
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 53.6 bits (128), Expect = 6e-07
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
K E AK E++ K E+KK++ L + E ++ ++ + K +EE +K E
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
Query: 809 MEKEKRKKILREREEEK--EEQPATKKIKVEKPEESNEKTKQHKIKSEP--KENDSSKEK 864
+K+K ++ + E+EK E + + +K EE +K + K K+E K + +K K
Sbjct: 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
Query: 865 PEESNEKTKRHKIKSEPKENDSSKGK 890
EE+ ++ + K K+E + D + K
Sbjct: 1732 AEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Score = 48.6 bits (115), Expect = 2e-05
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 3/190 (1%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKID-ALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
K E AK + K+ E KK A + + +E ++ ++ K E K+K +
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Query: 809 MEKEKRKKILRERE-EEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN-DSSKEKPE 866
K+K ++ + E ++K E+ K +++K + +K + K K+E K+ D +K+K E
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
Query: 867 ESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQ 926
E+ + + K E K+ + +K K+ + K A K ++ K +
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 927 NKKKKNSKRK 936
KK +K+K
Sbjct: 1502 AKKAAEAKKK 1511
Score = 47.1 bits (111), Expect = 6e-05
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 12/218 (5%)
Query: 722 DKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKT 781
D+ + K + + K + K E K E K ++KK D ++K
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKK 1412
Query: 782 EPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEE 841
K + K+ K+EEK+K + K+K ++ + E +K+ + A K + +K E
Sbjct: 1413 AAAAKKKADE----AKK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
Query: 842 SNEKTKQHKIKSEPKEN-DSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDF 900
+K + K K+E + D +K+K EE+ +K K +E K+ K+ +
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
Query: 901 SKVNYNKYMAKPGKSNQKKKGKGGKQNK--KKKNSKRK 936
K K + K+ +KKK K+ + KK K+K
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
Score = 46.7 bits (110), Expect = 6e-05
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 760 EKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILR 819
E+ K+ E KK + + E ++ IK+EE K + L+
Sbjct: 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE--------LK 1284
Query: 820 EREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKS 879
+ EE+K+ A K + +K +E+ +K + E K+ D +K+K EE+ +K K K+
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKA 1338
Query: 880 EPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRK 936
E + + K+ + + A+ K KKK KKK K+K
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK---ADAAKKKAEEKKK 1392
Score = 45.9 bits (108), Expect = 1e-04
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 6/217 (2%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK 780
E+K K K + K K + + K+ E K +E K +A +KK + +
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
E E ++ ++K E K+K ++ EE+K+ A K K E
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK-----KAE 1401
Query: 841 ESNEKTKQHKIKSEPKEN-DSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVD 899
E +K + K + K+ D +K+K EE + + K E K+ D +K K+ +
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
Query: 900 FSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRK 936
K A K ++ K + KK + +K+K
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 45.5 bits (107), Expect = 2e-04
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
+E K E+ K + K + ++K EE K+ Q LK+ ++EEK+K E K
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAE----ELKKAEEEKKKVEQ----LKKKEAEEKKKAEELK 1653
Query: 812 --EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
E+ KI E +K E+ K + +K EE +K + K + + + K +E+
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
Query: 870 EKTKRHKIKSEPKEN 884
EK K ++K +EN
Sbjct: 1714 EKKKAEELKKAEEEN 1728
Score = 45.1 bits (106), Expect = 2e-04
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKI 789
K ++ K K + + K+ E AKA E E ++ + K E ++
Sbjct: 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Query: 790 TQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKI-KVEKPEESNEKTKQ 848
++ K+ E K+K E +K+K ++ + +K+ A KK + +K +E+ +K ++
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
Query: 849 HKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKY 908
K E K+ +K EE+ +K + K E K+ K+ D +K +
Sbjct: 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA-------DEAKKKAEEA 1495
Query: 909 MAKPGKSNQKKKGKGGKQNKKKKNSKRK 936
K ++ + + K KK +K
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 43.6 bits (102), Expect = 6e-04
Identities = 46/193 (23%), Positives = 96/193 (49%), Gaps = 12/193 (6%)
Query: 750 KSKEYAKAIQEKVDKE--NAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKV 807
K++E KA + K +E N +K + + EE +K+ +E K++K+EE +K
Sbjct: 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE---KKMKAEEAKKA 1615
Query: 808 EMEKEKRKKILREREEEKEEQPATKKI--KVEKPEESNEKTKQHKIKSE--PKENDSSKE 863
E K K +++ + EE+K+ + KK + +K EE + +++KIK+ K+ + K+
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Query: 864 KPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKG 923
K EE+ + + K +E + ++ + K + + + K + K+ ++ K K
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK---KKAEELKKAEEENKIKA 1732
Query: 924 GKQNKKKKNSKRK 936
+ K+ + K+K
Sbjct: 1733 EEAKKEAEEDKKK 1745
Score = 42.8 bits (100), Expect = 0.001
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K++E K E + KE E KK + ++K + E K +E LK+ + E K K E
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAE----ELKKKEAEEKKKAEE---LKKAEEENKIKAEE 1734
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
K++ ++ ++ EE K+++ KKI K EE + + K K E + +E +
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
Query: 870 EKTKRHKIKSEPKENDSSKGKSG 892
E K+ K + N GK G
Sbjct: 1795 EVDKKIKDIFDNFANIIEGGKEG 1817
Score = 42.4 bits (99), Expect = 0.001
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 711 KKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQK 770
KK+ Q+ ++ K K +++K + K E K E+ K ++K
Sbjct: 1633 KKVEQLKKKEAEEKK----KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Query: 771 KIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK--EKRKKILREREEEKEEQ 828
K +K E EE K + LK+ ++EEK+K E K E+ KI E +++ E+
Sbjct: 1689 KAAE---ALKKEAEEAKKAEE----LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 829 PATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP----EESNEKTKRHKIKSEPKEN 884
K + +K EE +K K + E K + KEK EE +E+ ++ +++ + K
Sbjct: 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
Query: 885 D 885
D
Sbjct: 1802 D 1802
Score = 42.1 bits (98), Expect = 0.002
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
LK E K +EK E A++ + D K E + + + V+K + E+K K E
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
Query: 809 -MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEE 867
+K + KI + EE K+ + KK++ K +E+ EK K ++K +EN + +
Sbjct: 1611 EAKKAEEAKI--KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
Query: 868 SNEKTKRHKIKSEPKENDSSK 888
E+ K+ +++ E D K
Sbjct: 1669 KAEEDKKKAEEAKKAEEDEKK 1689
Score = 41.7 bits (97), Expect = 0.003
Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 17/193 (8%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE---- 805
K + AK +E K+ E KK + + + E +K +E ++ K E++
Sbjct: 1522 KKADEAKKAEEA--KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
Query: 806 --KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKE 863
K E K+ + + E + EE+ K + +K EE+ K ++ K K+E ++ +
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK-KAEEEKKKVEQL 1638
Query: 864 KPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKG 923
K +E+ EK K ++K +EN + K +K A+ K ++ + K
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEA--------KKAEEDKKKAEEAKKAEEDEKKA 1690
Query: 924 GKQNKKKKNSKRK 936
+ KK+ +K
Sbjct: 1691 AEALKKEAEEAKK 1703
Score = 40.9 bits (95), Expect = 0.004
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 16/184 (8%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
LK AK ++ K+ E+KK D + K + EE K + ++ K E+ K +
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKAD----EAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Query: 809 MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEES 868
E+ K+ +++ EE ++ KK K EE+ +K + K +E K+ +K EE+
Sbjct: 1466 AEEAKKADEAKKKAEEAKKADEAKK----KAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
Query: 869 NEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNK 928
+ + K + K +++ K + + K + K + K+ +KKK + K+ +
Sbjct: 1522 KKADEAKKAEEAKKADEAKKAE--------EKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Query: 929 KKKN 932
+ KN
Sbjct: 1574 EDKN 1577
Score = 40.9 bits (95), Expect = 0.005
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKI 789
K ++ K ++ ++K+ +A E+V K E+KK+ A + K E +K
Sbjct: 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA--EEAKKAEEAKIKA 1622
Query: 790 TQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEK----EEQPATKKIKVEKPEESNEK 845
+++K E+EK ++E+ K+K+ +++ E+ EE+ K + K E ++K
Sbjct: 1623 -------EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Query: 846 TKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
+ K+E E +++ +E+ E K ++K + E
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
Score = 40.5 bits (94), Expect = 0.006
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 13/197 (6%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
Q +K++E KA +++ K ++K +A + K + +E K +E + E K+
Sbjct: 1269 QAAIKAEEARKA--DELKKAEEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKK 1322
Query: 806 KVEMEKEKRKKILREREEEKEEQPATK---KIKVEKPEESNEKTKQHKIKSE--PKENDS 860
K E K+K ++ EE K+ A K + ++ E + EK + + K E K+ D+
Sbjct: 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Query: 861 SKEKPEESNEKTKRHKIKSEPKEN-DSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKK 919
+K+K EE + + K E K+ D K + + K K A K ++
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
Query: 920 KGKGGKQNKKKKNSKRK 936
K + KKK +K
Sbjct: 1443 AKK-ADEAKKKAEEAKK 1458
Score = 33.2 bits (75), Expect = 0.86
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
K K ++ K+ E KK D + K + EE K E + +E K+K +
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKAD----EAKKKAEEAKKKADE----AKKAAEAKKKAD 1513
Query: 809 ---MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
+E +K ++ EE ++ KK + +K + +K ++ K E K+ + +K+
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Query: 866 EESNEKTKR----HKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKG 921
E+ N ++ K + E + + + K K A+ K +++K
Sbjct: 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
Query: 922 KGGKQNKKKKNSKRK 936
K + KK+ K+K
Sbjct: 1634 KVEQLKKKEAEEKKK 1648
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 47.7 bits (113), Expect = 4e-05
Identities = 39/256 (15%), Positives = 95/256 (37%), Gaps = 14/256 (5%)
Query: 700 NTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQ 759
L+ + + +K+ E + E + E + I+
Sbjct: 774 EKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAEL-LEEEQLLIEQEEKIK 832
Query: 760 EKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILR 819
E+ +E A + K + ++ E E ++ L Q ++E++E +K K + +
Sbjct: 833 EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 892
Query: 820 EREEEKEEQPA----------TKKIKVEKPEESNEKTKQHKIKSEPKE---NDSSKEKPE 866
E +E++E++ +K + + E K +SEP+E ++ +++ E
Sbjct: 893 EEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKE 952
Query: 867 ESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQ 926
E N++ + + K + + I+ + + YNK K + ++KK +
Sbjct: 953 EDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREI 1012
Query: 927 NKKKKNSKRKPFLFLW 942
++ ++
Sbjct: 1013 IEETCQRFKEFLELFV 1028
Score = 42.3 bits (99), Expect = 0.001
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 732 QKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQ 791
+ ++ + E+ Q K +E + ++ +E E+K + + E EE
Sbjct: 245 ELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 304
Query: 792 EPVVLK-----QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKT 846
+ K ++K EKE ++EKE +K+ +E EE E++ +IK E EE E+
Sbjct: 305 KLERRKVDDEEKLKESEKELKKLEKELKKE--KEEIEELEKELKELEIKREAEEEEEEQL 362
Query: 847 KQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
++ + K E E + +K ES + K+K E E
Sbjct: 363 EKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 399
Score = 41.5 bits (97), Expect = 0.003
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 8/169 (4%)
Query: 724 MKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKV-DKENAEQKKIDALTPQVKTE 782
+ + K Q++KLK + LK K + D +++ID L ++ E
Sbjct: 191 IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDE 250
Query: 783 PEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEES 842
EE QE +E+E + ++ K+ +E++ ++EE K + E E
Sbjct: 251 QEEIESSKQELE-------KEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 303
Query: 843 NEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
+ ++ E + + K E K ++ +I+ KE + K
Sbjct: 304 LKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352
Score = 32.6 bits (74), Expect = 1.3
Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 11/170 (6%)
Query: 769 QKKIDALT---PQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEK 825
K++ + P+ + E EE ++E K+ K E +K+ E E +++ + EE K
Sbjct: 142 GGKVEIIAMMKPERRLEIEEEAAGSRE----KRKKKERLKKLIEETENLAELIIDLEELK 197
Query: 826 EEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKEND 885
+ K + K + K+ E K E + ++ E +E +
Sbjct: 198 LQ--ELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIE 255
Query: 886 SSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKR 935
SSK + + + + K Q+++ K + +++ S+
Sbjct: 256 SSKQELEKEEEILAQVLKENKEEEKE--KKLQEEELKLLAKEEEELKSEL 303
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 47.0 bits (112), Expect = 6e-05
Identities = 45/218 (20%), Positives = 83/218 (38%), Gaps = 12/218 (5%)
Query: 720 FEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQV 779
FE+ ++ +K K R + K+K A +++ K+ ++KK +
Sbjct: 1137 FEEALEEQEEVEEKEIAKEQRLK------SKTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
Query: 780 KTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKP 839
K N K K + +K + +K +E +EE++ +P +K K
Sbjct: 1191 KASVVGNSKRVD-----SDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKS 1245
Query: 840 EESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVD 899
+++N + E +D SKE ++ K S P + G+S G
Sbjct: 1246 KKNNSSKSS-EDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSS 1304
Query: 900 FSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRKP 937
+K K + + +KKK K +KKK+ R
Sbjct: 1305 PTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVK 1342
Score = 40.0 bits (94), Expect = 0.007
Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 765 ENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEE-------------KEKVEMEK 811
++ +KK + +T + + EE+ + E + + KEKVE
Sbjct: 1049 KDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLN 1108
Query: 812 EKRKKILREREEEKEEQPAT----------KKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
+ +K +E E+ K P + ++ ++ E E K+ ++KS+ K S
Sbjct: 1109 AELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASK 1168
Query: 862 KEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKG 921
KP+ ++ K+ K S K +S + + + + K++ +K K S+ +
Sbjct: 1169 LRKPKLKKKEKKK-KKSSADKSKKASVVGNSKRVDSDEKRKLD-DKPDNKKSNSSGSDQE 1226
Query: 922 KGGKQNKKKKNSKRKP 937
+Q K K S K
Sbjct: 1227 DDEEQKTKPKKSSVKR 1242
Score = 34.3 bits (79), Expect = 0.44
Identities = 28/230 (12%), Positives = 63/230 (27%), Gaps = 12/230 (5%)
Query: 649 TKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPVFPNNIICAPS----NTHLS 704
K + +P L KKK+++++ S S V + S
Sbjct: 1164 GKASKLRKPKL---KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 705 SYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDK 764
S Q+ Q + +K +K + + L + K ++V
Sbjct: 1221 SGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSA 1280
Query: 765 ENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEE 824
+ P K K E ++K+K+ + R+++
Sbjct: 1281 VQYSPPPPS----KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKK 1336
Query: 825 KEEQPATKKIKVEKPEESN-EKTKQHKIKSEPKENDSSKEKPEESNEKTK 873
+ + K K + +++ + E+ +
Sbjct: 1337 SKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 32.7 bits (75), Expect = 1.2
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 760 EKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQI-KSEEKEKVEMEKEKR---- 814
EKV+K NAE +K + ++K +++ + + + + EE E+ E+ KE+R
Sbjct: 1102 EKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSK 1161
Query: 815 ---------KKILREREEEKEEQ------PATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
K L+++E++K++ A+ K +S+EK K K N
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVV-GNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 860 SSKEKPEESNEKTKRHKIKSEPKE----NDSSKGKSGGTISTVDFSKVNYNKYMAKPGKS 915
S ++ ++ +KTK K + + N S + S+ D SK K K +
Sbjct: 1221 SGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSA 1280
Query: 916 NQKKKGKGGKQNKKKKNSKRKP 937
Q K+ + N KP
Sbjct: 1281 VQYSPPPPSKRPDGESNGGSKP 1302
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 45.6 bits (108), Expect = 9e-05
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 755 AKAIQEKVDKENAEQK--KIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKE 812
AK + K+ + A ++ K + P KT+P + K K EEKEK ++++E
Sbjct: 64 AKCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESG-------KEEEKEKEQVKEE 116
Query: 813 KRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKT 872
K+KK + +EE K+ +P E+ +E ++ K K + E +E+ ++
Sbjct: 117 KKKKKEKPKEEPKDRKPK------EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Query: 873 KRHKIKSEPKENDSSKGKS 891
+ + K PK+ +K K
Sbjct: 171 AKSRPKKPPKKKPPNKKKE 189
Score = 43.7 bits (103), Expect = 5e-04
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE---- 805
SK A + + +N K+ + QVK E ++ + +E ++ K E KE
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Query: 806 -KVEMEKEKRKKILREREEEKEEQ-----PATKKIKVEKPEESN-EKTKQHKIKSEPKEN 858
+ E EKEK+ + R+REEEK+ + KK +KP E ++ K + +E
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203
Query: 859 DSSKEKPEESNEKTKRHKIKSEPKENDSSKG 889
K + + NE+ ++ + + +E +S
Sbjct: 204 VKGKPEEPDVNEEREKEEDDGKDRETTTSPM 234
Score = 40.3 bits (94), Expect = 0.006
Identities = 35/171 (20%), Positives = 67/171 (39%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K KE AK + +KE ++KK++ + + + E V+ P + K K+K
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPP 191
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
E+EK+++ RE + K E+P + + ++ ++ ++ E + SS+ S+
Sbjct: 192 EEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSS 251
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKK 920
K S K T + A+P K+K
Sbjct: 252 SLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPAPPRVKRK 302
Score = 39.1 bits (91), Expect = 0.010
Identities = 33/163 (20%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K KE K ++K ++ E+ K + K E +E ++ ++ E +++ E
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPK----DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE 163
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
+K +R + ++ +++P KK + + E+ + + +K +P+E D ++E+ +E +
Sbjct: 164 KKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQ-RQAAREAVKGKPEEPDVNEEREKEED 222
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKP 912
+ R S +E++S + S+ K + + MA P
Sbjct: 223 DGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASP 265
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 46.0 bits (110), Expect = 1e-04
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 4/127 (3%)
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
E+E RK+ + EE+ + A + E EE+ + E E ++ E
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPA 99
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKK 929
E ++ + + K K + K GKG ++ +
Sbjct: 100 EDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKA----ARGGKRGKGGKGRRRRRG 155
Query: 930 KKNSKRK 936
++ ++K
Sbjct: 156 RRRRRKK 162
Score = 45.6 bits (109), Expect = 1e-04
Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 27/187 (14%)
Query: 752 KEYAKAIQEKVDK--ENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
E AK + + E ++ I+ + E EE + + ++E E
Sbjct: 7 YELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEE-----------ARKEEAKREAEEE 55
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
K + ++ EE+ + A E+ E+ + +E + ++
Sbjct: 56 AKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPK 115
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKK 929
K K K + K K+ + +++ +G ++ +K
Sbjct: 116 AKKAAKKKKGPKPKKKKPKRKAARGG--------------KRGKGGKGRRRRRGRRRRRK 161
Query: 930 KKNSKRK 936
KK ++
Sbjct: 162 KKKKQKP 168
Score = 39.8 bits (94), Expect = 0.008
Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 14/150 (9%)
Query: 767 AEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKE 826
E+ + + + + E + + ++ K+E E+ E
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPA 99
Query: 827 EQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNE--------------KT 872
E A + + +K + K +PK+ ++ +
Sbjct: 100 EDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRR 159
Query: 873 KRHKIKSEPKENDSSKGKSGGTISTVDFSK 902
++ K K +P E + TI+ + ++
Sbjct: 160 RKKKKKQKPTEKIPREVVIPETITVAELAE 189
>gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional.
Length = 880
Score = 45.9 bits (110), Expect = 1e-04
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 232 FLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQ 291
L+ +A PL + I + E++ +++LK A D E + Q +
Sbjct: 279 LLRRAAAAEAAPLDEEDYETILDEEELEAWLAKLKAAGLFAFDTETTSLDPMQAELVGLS 338
Query: 292 ISTRDKD--YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM-F 348
+ + YI RE L L +L D I KV D+ L +G+ + G+ F
Sbjct: 339 FAVEPGEAAYIPLDQLDREVLAALKPLLEDPAIKKVGQNLKYDLHVL-ARYGIELRGIAF 397
Query: 349 DT 350
DT
Sbjct: 398 DT 399
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 44.9 bits (107), Expect = 2e-04
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
+ +K++ EK +K E ++EK+++ K K E+ EE EK ++ K + E + +
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 860 SSKEKPEES 868
+E+ E+
Sbjct: 465 EKEEEEEKK 473
Score = 41.1 bits (97), Expect = 0.003
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 792 EPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKI 851
+ + E+ EK E++K KK ++KEE+ +K K E+ +E E+ + +
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Query: 852 KSEPKENDS 860
+ E ++
Sbjct: 467 EEEEEKKKK 475
Score = 39.9 bits (94), Expect = 0.006
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 795 VLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSE 854
L K K+ ++ ++ KK E++E+K++ A KK + E+ EE +K ++ + + E
Sbjct: 401 FLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Query: 855 PKENDSSKEKPEESNEKT 872
E + +E+ ++ + T
Sbjct: 461 EAEEEKEEEEEKKKKQAT 478
Score = 37.2 bits (87), Expect = 0.047
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS 860
+EE+ + +K K +++ E+ E+ K EE ++ K+ + KE +
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEK----------KREEEKKEKKKKAFAGKKKEEEE 444
Query: 861 SKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDF 900
+EK ++ EK + + E KE + K K T+ DF
Sbjct: 445 EEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATLF--DF 482
Score = 34.5 bits (80), Expect = 0.33
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 737 KTSRFET-PYQRFLKSK--EYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEP 793
+ R E P+ + E A + ++ +++I+ LT K + + +
Sbjct: 364 RKVRREVLPFLSIIFKHNPELAARLAAFLE---LTEEEIEFLTGSKKATKKIKKIVEKAE 420
Query: 794 VVLKQIKSEEKEKVEMEKEK-RKKILREREEEKEEQPATKKIKVEKPEESNEKTKQ 848
++ K E+K+K K+K ++ + ++E+E++ ++ + EK EE +K KQ
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQ 476
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 41.4 bits (97), Expect = 0.003
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 8/178 (4%)
Query: 764 KENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSE----EKEKVEMEKEKRKKILR 819
KE+ ++ KI + T + +E++ T VL++ +S +K K+ K + L+
Sbjct: 308 KEDQKESKIKSGTNLKLSSEKESIPETSYVNVLEEEQSPLVRLQKRKLARSTSKTLESLK 367
Query: 820 EREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKS 879
E E++ K+ + E+ + KT ++ + + N+ T KI +
Sbjct: 368 EVFEDQASSVKNKQAQSEENLNESPKTPIAVTGDPHLKDPTIIAGKKLMNKLTS-EKINN 426
Query: 880 EPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRKP 937
K SK K + D + + + A P S + +K G + K KN K P
Sbjct: 427 PVKVVKVSKYKGNKSEKKRDINVL--DTIFASP-VSKELRKKVGKSKQTKLKNFKPVP 481
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 40.0 bits (93), Expect = 0.006
Identities = 35/194 (18%), Positives = 85/194 (43%), Gaps = 10/194 (5%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEE--KEK 806
LK + + + VD ++ KK+ ++ + E+ V ++ LK+ +S+E K
Sbjct: 160 LKKNILSGNVSD-VDTDSISDKKVVE---ALREDNEKGVNFRRDMTDLKERESQEDAKRA 215
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEK-- 864
++++E KK + + +++ A ++ +E +K ++ K +P + S KE
Sbjct: 216 QQLKEELDKKQIDADKAQQKADFAQDNADKQR-DEVRQKQQEAKNLPKPADTSSPKEDKQ 274
Query: 865 -PEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKG 923
E + ++ +I+ + + ++ K K SK + + K ++ +K++
Sbjct: 275 VAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVA 334
Query: 924 GKQNKKKKNSKRKP 937
K K + +P
Sbjct: 335 EDLQKTKPQVEAQP 348
Score = 35.4 bits (81), Expect = 0.15
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 750 KSKEYAKAIQEKVDKE-NAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEK---E 805
K + KA Q+ + NA++++ + Q + + T P KQ+ +K E
Sbjct: 225 KQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIE 284
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
K ++E +K + + ++ K + EK E +K + + K EP D K KP
Sbjct: 285 KAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAE--DKELEAQKKREPVAEDLQKTKP 342
Query: 866 EESNEKT 872
+ + T
Sbjct: 343 QVEAQPT 349
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 39.6 bits (92), Expect = 0.008
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 764 KENAEQKKI-DALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRERE 822
+E ++ +AL Q + +P + EP Q + E +E+E++++ ERE
Sbjct: 66 REERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQ-EDSGAENETVEEEEKEESREERE 124
Query: 823 EEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPK 882
E +E + TK + ++ E K+ K +E + EE+N + HK+K
Sbjct: 125 EVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKH--T 182
Query: 883 ENDSSKGKSGGT 894
EN S+G + G
Sbjct: 183 ENTFSRGGAEGA 194
Score = 34.6 bits (79), Expect = 0.28
Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 755 AKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKR 814
+ ++ + +++ + + + E EE +T+ E++ + E+
Sbjct: 98 RRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKS----------EQKNDWRDAEEC 147
Query: 815 KKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP-----------KENDSSKE 863
+K +E E E+EE+P ++ E K K + KE + K+
Sbjct: 148 QKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQ 207
Query: 864 KPEESNEKTKRHKIKSEPK 882
K +E+ + + K K E +
Sbjct: 208 KQQEAALELEELKKKREER 226
Score = 34.6 bits (79), Expect = 0.30
Identities = 23/150 (15%), Positives = 59/150 (39%), Gaps = 7/150 (4%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
+ + E ++E ++ ++ + T ++ + T + + E ++ E K
Sbjct: 147 CQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLK 206
Query: 812 EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEK 871
+K+++ E EE K+++ +K EE + ++ + +E + + K E
Sbjct: 207 QKQQEAALELEELKKKREERRK---VLEEEEQRRKQEEADRKSREEEEKRRLKEEIE--- 260
Query: 872 TKRHKIKSEPKENDSSKGKSGGTISTVDFS 901
+R +E ++ G S F+
Sbjct: 261 -RRRAEAAEKRQKVPEDGLSEDKKPFKCFT 289
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 38.2 bits (89), Expect = 0.011
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 777 PQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQ---PATKK 833
+ E +++ V L K E E + E + + + E P K
Sbjct: 24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPK 83
Query: 834 IKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGG 893
K + E K + K K +PK K +P+ +K K+ N ++ S
Sbjct: 84 PKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT-AAKAPAAPNQPARPPSAA 142
Query: 894 TIST 897
+ S
Sbjct: 143 SASG 146
Score = 32.8 bits (75), Expect = 0.65
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 757 AIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK--EKR 814
E V P + +PE Q + E + ++ +
Sbjct: 32 VGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPE 91
Query: 815 KKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
KK + + + K + K+K + + K + P
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 39.0 bits (91), Expect = 0.012
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 749 LKSKEYAKAIQE-KVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKV 807
+K K K K + K +K P + I + K++EK++
Sbjct: 176 VKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMS---SFFKKKTKEKKEK 232
Query: 808 EMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEE 867
+ E K EE +EE I ++ E + + EPK + + EE
Sbjct: 233 KEASESTVK-----EESEEESGKRDVILEDESAEPTGLDEDED-EDEPKPSGERSDSEEE 286
Query: 868 SNEKTKRHKIKSEPKENDSSK 888
+ EK K + + + D +
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDE 307
Score = 38.7 bits (90), Expect = 0.014
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 767 AEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRER---EE 823
++KK + + E + + V+L+ +E E E E K ER EE
Sbjct: 226 TKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEE 285
Query: 824 EKEEQPATKKIKVEKPEE-SNEKTKQHKIKSEPKENDSSKEKPEESNEKTK 873
E EE+ K+ +++K E +E + + P E + S+E K +
Sbjct: 286 ETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKE 336
Score = 34.4 bits (79), Expect = 0.33
Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 19/195 (9%)
Query: 752 KEYAKAIQEKVDKENAEQKK------IDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
KE +A + V +E+ E+ D + +E+ EP + E+E
Sbjct: 230 KEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDED---EDEPKPSGERSDSEEE 286
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKP-EESNEKTKQHKIKSEPKENDSSKEK 864
E EKEKRK++ ++ E E++ +I E P EE + + + +E
Sbjct: 287 TEEKEKEKRKRL--KKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTV 344
Query: 865 PEESNEKTKRHKIKSEPKEND------SSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQK 918
+ + R ++ + D + K + S D ++ K K
Sbjct: 345 SPDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWESFSE-DEAEPPPTKPKPKVSTPAVP 403
Query: 919 KKGKGGKQNKKKKNS 933
K K KKKK S
Sbjct: 404 AAAKKPKAPKKKKQS 418
Score = 32.9 bits (75), Expect = 0.82
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 4/122 (3%)
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKE-KPEES 868
KR+ + PA K K S + + K +++ E +
Sbjct: 133 PNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETT 192
Query: 869 NEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNK 928
EKT+ + KS S F K + K S K + +++
Sbjct: 193 TEKTEGKTSVKAASLKRNPPKKSNIMSS---FFKKKTKEKKEKKEASESTVKEESEEESG 249
Query: 929 KK 930
K+
Sbjct: 250 KR 251
Score = 32.5 bits (74), Expect = 1.2
Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 26/164 (15%)
Query: 742 ETPYQRFLKSKEYAKAIQEKVDKENAEQKKI------------DALTPQVKTEPEENVKI 789
+ S E + + +E +KE ++K++ + P+ E EE+ +
Sbjct: 268 DEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEP 327
Query: 790 TQEPVVLKQIKSEEKEKVE--MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTK 847
P+ K+ + EE + R+++++ ++ K+E+ KV + E +E
Sbjct: 328 EPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMK-KKTFKDEEGYLVTKKVYEWESFSE--- 383
Query: 848 QHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
E + KP+ +PK K S
Sbjct: 384 --------DEAEPPPTKPKPKVSTPAVPAAAKKPKAPKKKKQSS 419
Score = 32.1 bits (73), Expect = 1.7
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 9/134 (6%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIK----SEEKE 805
K ++ + ++ E K D + EP + E + EE E
Sbjct: 229 KKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETE 288
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKP-EESNEKTKQHKIKSEPKENDSSKEK 864
+ E EK KR K + E E+E EE +I E P EE + + + +E
Sbjct: 289 EKEKEKRKRLKKMMEDEDEDEE----MEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTV 344
Query: 865 PEESNEKTKRHKIK 878
+ + R ++
Sbjct: 345 SPDGGRRRGRRRVM 358
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 38.0 bits (88), Expect = 0.014
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 7/141 (4%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K +E K Q + E K + P + + +E K + ++ E KV
Sbjct: 100 KVEEEVKE-QLQSLLEKIVVSKQEEDGPGKEPQLDE-DKFLLAEDSDDRQETLEAGKVHE 157
Query: 810 EKEKRKKILREREEE-----KEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEK 864
E E + E+ KE+ + ++P E E+TK ++ D
Sbjct: 158 ETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNP 217
Query: 865 PEESNEKTKRHKIKSEPKEND 885
E+S + + ++ +
Sbjct: 218 VEDSKAIKEELAKEPVEEQQE 238
Score = 35.7 bits (82), Expect = 0.090
Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKIL 818
+ + E Q + +V+ E +E ++ E +V+ + + + K E + ++ K +L
Sbjct: 81 EAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGK-EPQLDEDKFLL 139
Query: 819 REREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIK 878
E ++++E K+ EE+ + + SE + D ++ E+ NE +K K
Sbjct: 140 AEDSDDRQETLEAGKVH----EETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEK 195
Query: 879 SEPKENDSSK 888
+E + ++
Sbjct: 196 AERTKAETDD 205
Score = 31.8 bits (72), Expect = 1.3
Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 9/157 (5%)
Query: 755 AKAIQEKVDKENAEQKKIDALTPQVK---TEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
AK + +K +E + P+ E E + + + +++ E+ + + +
Sbjct: 61 AKVLLGLKEKSTSEPT----VPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKI 116
Query: 812 EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEK 871
K E KE Q K + + + ++T + E E+ E+ K
Sbjct: 117 VVSK--QEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYK 174
Query: 872 TKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKY 908
+ SE + DS + + + V Y
Sbjct: 175 QDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDY 211
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.9 bits (91), Expect = 0.016
Identities = 25/141 (17%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKI 789
K ++++ + E + + +E + +QE++++ E +++ + +++ E EE +
Sbjct: 233 KLKELRKELEELE---EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289
Query: 790 TQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQH 849
E + ++I+ E E + + + E E+ + +KI+ K E +T
Sbjct: 290 LLE--LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLE 347
Query: 850 KIKSEPKENDSSKEKPEESNE 870
+++ E + +KE+ EE
Sbjct: 348 ELEQLLAELEEAKEELEEKLS 368
Score = 32.0 bits (73), Expect = 2.3
Identities = 26/146 (17%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAE-QKKIDALTPQVKTEPEENVK 788
+ ++++ + E + E + +E++++E E +++I+ L ++ EE ++
Sbjct: 794 ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL-EEELE 852
Query: 789 ITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQ 848
++ + + + EE E + E E K L E +EE EE+ + ++ + +E EK +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK-LR 911
Query: 849 HKIKSEPKENDSSKEKPEESNEKTKR 874
+++ + + + + E E+ +
Sbjct: 912 ERLEELEAKLERLEVELPELEEELEE 937
Score = 30.1 bits (68), Expect = 9.1
Identities = 29/170 (17%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 709 QDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAE 768
++++ ++ E+ + ++++ + + +E +A+QE++++ E
Sbjct: 742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEE 801
Query: 769 ----QKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEE 824
++++DAL ++++ + ++ QE L++ E +EK++ +E+ +++ +E EE
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861
Query: 825 KEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKR 874
KEE + K E E K + + + +E + + E E+ ++
Sbjct: 862 KEELEELEAEKEE--LEDELKELEEEKEELEEELRELESELAELKEEIEK 909
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 37.4 bits (87), Expect = 0.019
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
E EKE K+ +E E E+EE+ KK K K E+ +K K+ K+
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Query: 860 SSKEK 864
K+K
Sbjct: 186 KKKKK 190
Score = 29.3 bits (66), Expect = 7.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 820 EREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKS 879
E E++ K+ +VE+ E+ EK K+ ++K E KE KEK E K+ K K
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKK-EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Query: 880 E 880
+
Sbjct: 192 K 192
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 38.0 bits (89), Expect = 0.020
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 718 LFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKE---------------YAKAIQEKV 762
LF E++ K+ KY ++ K + E Q FL SKE KAI+ +
Sbjct: 152 LFLEERDKL-EAKYNQVPRKGVKAEEVLQEFLNSKEAVEEAILQTDQALTAKEKAIEAER 210
Query: 763 DKENAEQKKIDALTPQVKTEPE--ENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE 820
K A + + + L + K E + E + + + V + I+ E E+ ++ E+ + + +
Sbjct: 211 AKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHK 270
Query: 821 REEEKE 826
+E++E
Sbjct: 271 LQEQEE 276
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 38.5 bits (90), Expect = 0.021
Identities = 33/156 (21%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 725 KIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPE 784
++G ++++ + E Y +L+ K+ K ++ + + ++++D ++ +
Sbjct: 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640
Query: 785 ENVKITQEPVVLKQIKSEE----KEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
++ +E L++ SEE + +E + LR EE E++ K +EK +
Sbjct: 641 RLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
Query: 841 ESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHK 876
E E+ ++ K + E E + E+ EE EK K++K
Sbjct: 701 EELEEREKAKKELEKLEK--ALERVEELREKVKKYK 734
Score = 36.2 bits (84), Expect = 0.10
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 740 RFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQI 799
+E Y+ + + K E+++K + I+ L + + E EE VL++I
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE---------VLREI 209
Query: 800 K--SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE 857
S E ++ E EK +K ++E EE KEE + ++E E +++ + KI+ +
Sbjct: 210 NEISSELPELREELEKLEKEVKELEELKEEI-EELEKELES-LEGSKRKLEEKIRELEER 267
Query: 858 NDSSKEKPEESNEKTKR-HKIKSEPKE 883
+ K++ EE EK K ++K + +E
Sbjct: 268 IEELKKEIEELEEKVKELKELKEKAEE 294
Score = 35.8 bits (83), Expect = 0.13
Identities = 32/168 (19%), Positives = 84/168 (50%), Gaps = 7/168 (4%)
Query: 728 SNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKT---EPE 784
S++ +++ + + E + + KE + ++++++ ++K++ +++ E +
Sbjct: 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272
Query: 785 ENVKITQEPVV-LKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKV--EKPEE 841
+ ++ +E V LK++K + +E +++ + + + RE EK ++I E+ +E
Sbjct: 273 KEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
Query: 842 SNEKTKQ-HKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSK 888
EK ++ ++K + KE + E+ EE +E + K K E E +
Sbjct: 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380
Score = 30.0 bits (68), Expect = 8.1
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 796 LKQIKSEEKEKVEMEKEKRKKILRER---EEEKEEQPATKKI---KVEKPEESNEKTKQH 849
++++ +E ++E +K ++++ + E+ KE + KK ++EK E EK K+
Sbjct: 475 ERKLR-KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEK 533
Query: 850 --KIKSEPK--ENDSSKEKPEESNEKTKRHKIKSEPKE 883
K+K E K + + K + + K+ +E
Sbjct: 534 LIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEE 571
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 38.1 bits (89), Expect = 0.024
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 23/158 (14%)
Query: 775 LTPQVKTEPEENVKITQEPVVLK-QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKK 833
+ ++ ++ N I P L QI E+E+++ + +R+++L EE + K
Sbjct: 786 IITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKN 845
Query: 834 IKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGG 893
+K E E +E + +E + K + + K++PK+ +
Sbjct: 846 LKQEIKLELSEIQEA------------EEEIQNINENKNEFVEFKNDPKKLNKLI----- 888
Query: 894 TISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKK 931
V ++ +K K K++ +K
Sbjct: 889 -----IAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKT 921
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 37.6 bits (87), Expect = 0.029
Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 8/183 (4%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K E A+ + K+ EQ + A + K E K E ++K+ + K +
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE-AAKAKAAAEA---AKLKAAAEAKKKA 173
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
E+ + + + E + + + E + + K K+E K +++EK
Sbjct: 174 EEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEK 233
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVD--FSKVNYNKYMAKPGKSNQKKKGKGGKQN 927
+K K K++ + + + +D F ++ K K G K G
Sbjct: 234 KK-AAAKAKADKAAAAAKAAERKAAAAALDDIFGGLSSGKNAPKTG-GGAKNASSQGSGA 291
Query: 928 KKK 930
K
Sbjct: 292 AKN 294
Score = 37.2 bits (86), Expect = 0.037
Identities = 33/201 (16%), Positives = 79/201 (39%), Gaps = 23/201 (11%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQV----KTEPEENVKITQEPVVLKQIKSEEKEKV 807
++Y + ++ + EQ++ + E ++ Q +++K++E++K
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEK--ERLKAQEQQKQ 119
Query: 808 EMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP----------KE 857
E EK+ ++ ++++EE+ + A ++ K + ++ + K+K+ K
Sbjct: 120 AEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKA 179
Query: 858 NDSSKEKPEESNEKTKRHKI--KSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKS 915
+ +K K E + K K + K ++ K+ ++ A K
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK-----AAAEKK 234
Query: 916 NQKKKGKGGKQNKKKKNSKRK 936
K K K K ++RK
Sbjct: 235 KAAAKAKADKAAAAAKAAERK 255
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 36.2 bits (84), Expect = 0.029
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 713 IAQIGLFFEDKMKIGSNKYQK--IKLKTS--RFETPYQRFLKSKEYAKAIQEKVDKENAE 768
A + K+++ N+Y+K I++ T + ET + L + E K I + KE E
Sbjct: 13 SADSAAENDGKLQVKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPE 72
Query: 769 QKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKV 807
Q+++ VK T KQ+ S E E+
Sbjct: 73 QEELKNQLFSENATENNTVKAT-----KKQLFSSEYEQT 106
Score = 30.4 bits (69), Expect = 2.3
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 774 ALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKK 833
P + E + K+ +P ++ E E+ + K L EE+K+ T +
Sbjct: 9 LFLPSADSAAENDGKLQVKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKK---ITFQ 65
Query: 834 IKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEE----SNEKTKRHKIKSEPKENDSSK 888
EKPE+ E+ K EN++ K ++ E+T + +E +
Sbjct: 66 KHKEKPEQ--EELKNQLFSENATENNTVKATKKQLFSSEYEQTSSSSESTSEEETKKTS 122
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 37.5 bits (88), Expect = 0.031
Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
E+ + ++ + +++ L + + EE + E L +I+ ++E VE +
Sbjct: 349 AEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVE--ELLEIEGFDEETVEELR 406
Query: 812 EKRKKILREREEEKEEQPATKKIKVEKPEES-NEKTKQHKIKSEPKENDSSKEKPEESNE 870
E+ K+ L +EE+ A + +E + K + IK+ + + ++ +
Sbjct: 407 ERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEG 466
Query: 871 KTKR 874
++
Sbjct: 467 DEEK 470
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 37.4 bits (87), Expect = 0.032
Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 23/166 (13%)
Query: 755 AKAIQEKVDKENAEQKKIDAL------TPQVKTEPEENVKI--------TQEPV----VL 796
+ +E+V+KE E+ DA+ T K E E ++ + V +L
Sbjct: 114 DEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNSML 173
Query: 797 KQIKSEEKEKVEMEKEK----RKKILREREEEKEEQPAT-KKIKVEKPEESNEKTKQHKI 851
+ + EK++ E E+E+ K + E E++ + A + + ++ + N + +
Sbjct: 174 EALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGS 233
Query: 852 KSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTIST 897
S K K+ + +E K K + + +
Sbjct: 234 SSPAKPTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVR 279
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 36.9 bits (86), Expect = 0.035
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 782 EPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEE 841
+ EE K+ + K +K++ +EK + ++EK +K LRE EE+ E +K+++ K +E
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQE 104
Score = 33.1 bits (76), Expect = 0.62
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 820 EREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKS 879
E+EEEK + A K K + EK K + K E + ++ PE+ E ++ +++
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPED--ELAEKLRLRK 101
Query: 880 EPKEND 885
+E+D
Sbjct: 102 LQEESD 107
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 36.2 bits (84), Expect = 0.045
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 796 LKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
KQ + +++E E E+E+RKK+ +RE E++E+ ++ + +K EE K ++ + + E
Sbjct: 13 EKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Query: 856 KE 857
+E
Sbjct: 73 EE 74
Score = 32.7 bits (75), Expect = 0.55
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 799 IKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN 858
K K++ ++E+++ ++ RE EEE+ E+ KK++ ++ E E+ + + + + KE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREE--RKKLEEKREGERKEEEELEEEREKKKEE 58
Query: 859 DSSKEKPEE 867
+ KE+ E+
Sbjct: 59 EERKEREEQ 67
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 37.2 bits (86), Expect = 0.046
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 815 KKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSS------KEKPEES 868
K R +++ KE+ P K+IK+E P E + + E K D+ K+KP +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 869 NEKTK 873
+ T+
Sbjct: 852 DNMTR 856
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 36.2 bits (83), Expect = 0.048
Identities = 22/93 (23%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 778 QVKTEPEENVKITQEPVVLKQIKSE----EKEKVE--MEKEKRKKILREREEEKEEQPAT 831
Q+++ ++++K ++ ++++Q + E E+E++E ME E+R++ + ERE+++E++
Sbjct: 106 QLRSVKKDDIK-KKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERER 164
Query: 832 KKIKVEKPEESNEKTKQHKIKSEPKENDSSKEK 864
++ +E+ + +E + +SE + +D EK
Sbjct: 165 EEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 37.1 bits (86), Expect = 0.048
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 753 EYAKAIQEKVDKENAEQKKIDA--LTP-QVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
+Y + +EK ++ +TP + EN +I + K+E K + +
Sbjct: 293 QYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKT---RTAEKNEAKARKKE 349
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK------SEPKENDSSK- 862
+KR+ RE E ++ + + + K K+ + P EN+ SK
Sbjct: 350 IAQKRRAAEREINREARQE-RAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKG 408
Query: 863 EKPEESNEKTKRHK 876
P+ T
Sbjct: 409 SPPQVEATTTAEPN 422
Score = 33.3 bits (76), Expect = 0.68
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 816 KILREREEEKEEQPATKK-IKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKR 874
+I + R EK E A KK I ++ E ++ + + ++ + + K K+
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINRE---ARQERAAAMARARARRAAVKAKK 387
Query: 875 HKIK------SEPKENDSSKGKSGGTIST 897
+ P EN+ SKG +T
Sbjct: 388 KGLIDASPNEDTPSENEESKGSPPQVEAT 416
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 37.2 bits (86), Expect = 0.056
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 755 AKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKR 814
AI + D LT T E +I Q+ K EK E+ E+
Sbjct: 334 EAAIAKAPDVPGWSNTASGTLTDSYVTPKEAQAEIEQKLAQEKAQLDAAVEKGELTPEQA 393
Query: 815 KKILREREEEKEEQPATKKIKVEKPEESNEKTKQHK 850
K+I R + E +E + ++EK +++ KQ +
Sbjct: 394 KQIARAKLEPEERE------RLEKIDKAQAALKQAQ 423
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 36.9 bits (85), Expect = 0.065
Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 8/140 (5%)
Query: 791 QEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHK 850
+P + S E ++ E E+ +EE +KK K K + +
Sbjct: 295 NDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Query: 851 IKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE-----NDSSKGKSG---GTISTVDFSK 902
++D S E+S K K KE N SS G SG + + D K
Sbjct: 355 DSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSGPARPSPESKDKGK 414
Query: 903 VNYNKYMAKPGKSNQKKKGK 922
++K S KK K
Sbjct: 415 RKAANEVSKSPASVPAKKLK 434
Score = 34.6 bits (79), Expect = 0.30
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 1/127 (0%)
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
+ E R++ P ++ PE + + SE E + ++E+ S
Sbjct: 278 DDEGREEDYISDSSASGNDP-EEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKK 929
+ K K+K + D SG D + + + KK+
Sbjct: 337 KGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSS 396
Query: 930 KKNSKRK 936
NS
Sbjct: 397 PGNSGPA 403
>gnl|CDD|219714 pfam08066, PMC2NT, PMC2NT (NUC016) domain. This domain is found at
the N-terminus of 3'-5' exonucleases with HRDC domains,
and also in putative exosome components.
Length = 91
Score = 33.8 bits (78), Expect = 0.065
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 33 IVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ----NISKSMSK 88
+V+ T+ A S + + P + + S ++++L++ LL++ I +
Sbjct: 1 LVQTTRAASSLAAQDIDFYRSFDPEFSQSLDEQSQRLLSLINDLLQSADSRGRIPDRSEE 60
Query: 89 LYLEGQKDILTEANDKLLESINTRIDVMAG 118
+E Q +++ ND LLE +T +D + G
Sbjct: 61 DDVEDQWKAVSDVNDSLLEKADTLLDELKG 90
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 36.2 bits (84), Expect = 0.091
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Query: 782 EPEENVKITQEPVVLKQIKSEEKEKV-EMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
NV + + ++ + E K +K+K++ E K++ KK K EK E
Sbjct: 26 YIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKN---NESKKKSEKKKKKKKEKKE 82
Query: 841 ESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTIST--- 897
+E + K+ K + K+ P+ + + + + S G +S
Sbjct: 83 PKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVYIGAHVSASGG 142
Query: 898 VDFSKVN 904
VD S +N
Sbjct: 143 VDNSPIN 149
Score = 33.5 bits (77), Expect = 0.59
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
+ E K K ++ + + + EK+KK +E++E K E K K
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKK- 98
Query: 841 ESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIK 878
K K +PK N+ + E ++ +
Sbjct: 99 ----SKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
Score = 32.0 bits (73), Expect = 1.5
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 799 IKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN 858
+ + + + + +E E+ K ++ +K + K KSE K+
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKK 75
Query: 859 DSSKEKPEESNEKTKRHKIKSEPKENDSSK 888
++K +S +TK K+ K + K
Sbjct: 76 KKKEKKEPKSEGETKL-GFKTPKKSKKTKK 104
Score = 30.1 bits (68), Expect = 7.5
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 27/126 (21%)
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
+K K + I K + E K K + K+ D + E ++S
Sbjct: 17 QKSKLQPI----SYIYSNVLVLSKEILSTFSEEENKVATTSTKKD-KKEDKNNESKKKSE 71
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKK 929
+K K+ K K + S+G++ K+ +K K K K
Sbjct: 72 KKKKKKKEK----KEPKSEGET------------------KLGFKTPKKSKKTKKKPPKP 109
Query: 930 KKNSKR 935
K N
Sbjct: 110 KPNEDV 115
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 35.5 bits (82), Expect = 0.093
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
Q ++E+E + + ++ +I +EEEKE A E ++ ++ ++ + ++E +
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKE---AANSEDKEDKGDAEKEDEESEEENEEE 98
Query: 857 ENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTIST 897
+ +SS E +E+ EKT E S + T
Sbjct: 99 DEESSDENEKETEEKT-------ESNVEKEITNPSWKPVGT 132
Score = 32.0 bits (73), Expect = 1.1
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 778 QVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVE 837
E E QE ++++K EEKE E ++ K + +EE EE + + E
Sbjct: 44 AAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEE-----ENEEE 98
Query: 838 KPEESNEKTKQHKIKSEPKENDS 860
E S+E K+ + K+E
Sbjct: 99 DEESSDENEKETEEKTESNVEKE 121
Score = 31.2 bits (71), Expect = 2.0
Identities = 12/71 (16%), Positives = 29/71 (40%)
Query: 827 EQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDS 886
A + K + E + ++K E KE +S++K ++ + + + + + E +E D
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Query: 887 SKGKSGGTIST 897
+
Sbjct: 101 ESSDENEKETE 111
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 34.3 bits (79), Expect = 0.11
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 816 KILRE-----REEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNE 870
KI RE EEE+ E+ +T + + E P E+ ++K+ K K E + + KEKP+ +
Sbjct: 86 KIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKK-KREVPKPKTEKEKPKTEPK 144
Query: 871 KTKRHKIKSEPK 882
K K S+PK
Sbjct: 145 KPK----PSKPK 152
Score = 30.9 bits (70), Expect = 1.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
+EE+ E E+E + E +E+K+ + K + EKP+ +K K S+PK
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK----PSKPK 152
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 35.8 bits (82), Expect = 0.11
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 769 QKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEE---- 824
QK +A T + E + + ++ K+ K +EK++ E E++K KK E +
Sbjct: 176 QKHRNAETSK-SPEKGDVPAVEKKS---KKPKKKEKKEKEKERDKDKKKEVEGFKSLLLA 231
Query: 825 KEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNE-KTKRHKIKSEPKE 883
++ PA+ E E S T + E E K K+ K + E +E
Sbjct: 232 LDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEE 291
Query: 884 NDSSKGKS 891
K
Sbjct: 292 KKKKKKHH 299
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 35.9 bits (83), Expect = 0.12
Identities = 31/176 (17%), Positives = 74/176 (42%), Gaps = 12/176 (6%)
Query: 711 KKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPY-QRFLKSKEYAKAIQEKVDKEN--- 766
+++ ++ + + + + + E + K + + +E + E
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308
Query: 767 ---AEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSE---EKEKVEMEKEKRKKILRE 820
A ++++ L ++K+ E K+ ++ L+ E EK ++ E+R K L E
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368
Query: 821 REE--EKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKR 874
R E EKE + A +++K + K + ++ + +E E+ E+ E+ +R
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELER 424
Score = 30.5 bits (69), Expect = 5.1
Identities = 25/135 (18%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 752 KEYAKAIQEKVDKENAE----QKKIDALTPQVKTEPEEN-VKITQEPVVLKQIKSEEKEK 806
++ ++ ++E + + A+ + ++ L ++ E ++ + + + + +E+E+
Sbjct: 170 EKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEE 229
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPE 866
+E E E ++ L E EEEKE +++ E + +K +E + E
Sbjct: 230 LEQEIEALEERLAELEEEKERL-----EELKARLLEIESLELEALKIREEELRELERLLE 284
Query: 867 ESNEKTKR-HKIKSE 880
E EK +R +++ E
Sbjct: 285 ELEEKIERLEELERE 299
Score = 30.1 bits (68), Expect = 7.3
Identities = 28/196 (14%), Positives = 70/196 (35%), Gaps = 24/196 (12%)
Query: 747 RFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEK 806
KE + ++E++ + + K+++ Q++ + E
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAE-------------- 625
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQ-----HKIKSEPKENDSS 861
E E+ ++ L E+ Q +++ EE EK ++ + + +
Sbjct: 626 --NELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQL 683
Query: 862 KEKPEESNE-KTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKK 920
+EK EE + + + +++ E +E G+ I ++ K + + + +K
Sbjct: 684 EEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKE-LEKLEKAL 742
Query: 921 GKGGKQNKK-KKNSKR 935
+ +K K R
Sbjct: 743 ELLEELREKLGKAGLR 758
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 35.1 bits (81), Expect = 0.13
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 816 KILREREEEKEEQPATKKIKVEKPEES--NEKTKQHKIKSEPKENDSSKEKPEESNEKTK 873
+ LRE E+E ++Q + K + EES ++KT I+ +PKE +++ +++ E
Sbjct: 92 QQLRELEKESKKQAKSPK-AMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESAT 150
Query: 874 RHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNS 933
+ N S + K AK + K K K +
Sbjct: 151 SPESSPSSTPNSSRPSTPH--LLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKA 208
Query: 934 KRKP 937
+K
Sbjct: 209 GKKM 212
Score = 32.0 bits (73), Expect = 1.5
Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEEKEEQP----ATKKIKVEKPEESNEKTKQHKIK 852
KQ KS + + E +K KK + E K ++P +K E
Sbjct: 103 KQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPESSPSSTPNS 162
Query: 853 SEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGT 894
S P K K S K K+ S D KS
Sbjct: 163 SRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAA 204
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 35.6 bits (82), Expect = 0.14
Identities = 40/179 (22%), Positives = 57/179 (31%), Gaps = 29/179 (16%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
K++ AK K AE KK K E K E + +E K+K E
Sbjct: 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE--AKKKAEAEAAAKAAAEAKKKAE 204
Query: 809 MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEES 868
E +K+ E K++ A K K + K +E + EK +
Sbjct: 205 AEAKKKAA-----AEAKKKAAAEAKAAAAKAA------AEAKAAAEKAAAAKAAEKAAAA 253
Query: 869 NEKTKRHKIKSEPKENDSSKG--KSGGTISTVDFSKVNYNKYMAKP-GKSNQKKKGKGG 924
+ + DS K K+GG A+ G N KK G G
Sbjct: 254 KAAAEVDDLFG---GLDSGKNAPKTGG----------GAKGNGAQGAGAGNGKKGGASG 299
Score = 35.2 bits (81), Expect = 0.16
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 12/148 (8%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDA---LTPQVKTEPEENVKITQEPVVLKQIKSE 802
QR K ++ A+ +Q+K E K+++ + K + EE K KQ ++E
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL----KQKQAE 135
Query: 803 EKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSK 862
E K K E K A KK E ++ E K +E K+ ++
Sbjct: 136 EAAAKAAAAAKAKA----EAEAKRAAAAAKKAAAEA-KKKAEAEAAKKAAAEAKKKAEAE 190
Query: 863 EKPEESNEKTKRHKIKSEPKENDSSKGK 890
+ + E K+ + +++ K +K K
Sbjct: 191 AAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 31.3 bits (71), Expect = 2.7
Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 32/148 (21%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
++Y + Q++ + AE+++ + + + EE ++K E+
Sbjct: 62 EQYNRQQQQQKSAKRAEEQR----KKKEQQQAEE-----------------LQQKQAAEQ 100
Query: 812 EKRKKILREREEEKEEQP----ATKKIKVEKPEESNEKTKQH-----KIKSEPKENDSSK 862
E+ K++ +ER +E++ A K+ +++ + K K ++E K ++
Sbjct: 101 ERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA 160
Query: 863 EKPEESNEKTKRHKIKSEPKENDSSKGK 890
+K E K+ + ++ K +K K
Sbjct: 161 KKAAA--EAKKKAEAEAAKKAAAEAKKK 186
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 35.8 bits (83), Expect = 0.15
Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 734 IKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQ-- 791
+ K R +RF K+ +Q E AE++ + ++ + ++K+
Sbjct: 847 LIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQEL---KIDVKSISSLKLVNLE 903
Query: 792 -EPVVL---KQIKSEEKEKVEMEKE---KRKKILREREEEKEEQPATKKIKVEKPEESNE 844
E ++ K + S+ E +E + E + KK+L + EE P+ + +K+ + + +E
Sbjct: 904 LESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNID--LEEGPSIEYVKLPELNKLHE 961
Query: 845 KTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
+ K SE E+ K ++K+ KE
Sbjct: 962 VESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKE 1000
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 35.2 bits (81), Expect = 0.15
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 762 VDKENAEQKKIDALTPQVKTEPEEN-VKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE 820
+D EN + KKI+ + K ++N K T+E L++ EKE E+++R + +E
Sbjct: 113 IDLENTK-KKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKE---EEEQRRLLLQKE 168
Query: 821 REEEKEEQPATKKIKVEKPEES----NEKTKQHKIKSEPKENDSSKEKPEESNE 870
EE++ + K+ +++ E S E QHK S E K KPE+ N
Sbjct: 169 EEEQQMNKRKNKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKPNT 222
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 35.6 bits (83), Expect = 0.17
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 763 DKENAEQ--KKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE 820
DKE + ++ L +++ + EE + +E +++K E +EK E +E+ K+L E
Sbjct: 514 DKEKLNELIASLEELERELEQKAEEAEALLKE---AEKLKEELEEKKEKLQEEEDKLLEE 570
Query: 821 REEE--------KEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE-NDSSKEKPEESNEK 871
E+E K+E K + + K H++ K N ++++K ++ ++
Sbjct: 571 AEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQ 630
Query: 872 TKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPG------KSNQKKKGKGGK 925
++ + E K D K S G V S + + + + G + +K + K
Sbjct: 631 KEKQE---ELKVGDEVKYLSLGQKGEV-LSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPK 686
Query: 926 QNKKKKNSKRKP 937
+ KKKK KP
Sbjct: 687 KKKKKKPKTVKP 698
Score = 30.2 bits (69), Expect = 6.6
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K++E ++E + ++K + L E E+ + E + IK +KE E+
Sbjct: 535 KAEEAEALLKEAEKLKEELEEKKEKLQ-----EEEDKLLEEAEKEAQQAIKEAKKEADEI 589
Query: 810 EKEKRKKILREREE--EKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
KE R+ E A K++ ++ +K KQ + + E K D
Sbjct: 590 IKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGD 641
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 34.0 bits (78), Expect = 0.24
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 828 QPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKT-KRHKIKSEPKENDS 886
KK K + + + K+ K K E E + + E NE+ K+ + +N +
Sbjct: 50 TSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTA 109
Query: 887 SKGKSGGTISTVD 899
++ I D
Sbjct: 110 AEVNHEDVIDLSD 122
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 32.4 bits (74), Expect = 0.24
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 795 VLKQIKSEE---KEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKI 851
VL++IK E E++E KE+ ++I++E EE E +E+ EE EK Q +
Sbjct: 8 VLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREI-------IEEAEEEAEKLAQEIL 60
Query: 852 KSEPKENDSSKEKPEESNEK 871
+ +E + E+ EK
Sbjct: 61 EEAREEAEEEAEEILAEAEK 80
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 34.8 bits (80), Expect = 0.24
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 729 NKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVK 788
Y+++K T Q LK EY K +Q+ K + + DA E K
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLK--EYNKKLQDYTKKLGEVKDETDA-------SEEAEAK 401
Query: 789 ITQEPVVLKQIKSEEKEKVEMEKEKRKK 816
+E + ++ + ++KE+ + +KEKR+K
Sbjct: 402 AKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 34.0 bits (78), Expect = 0.45
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 796 LKQIKSEEKEKVEMEKEKRKKILREREEE-KEEQPATKKIKVEKPEESNEKTKQHKIKSE 854
+++KS + +KR+++L+E ++ ++ ++K E + K + K +
Sbjct: 353 YEEVKSNTD----LSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLK 408
Query: 855 PKENDS-SKEKPEESNEKTKRHKIK 878
+EN+ KE+ +E EK ++ + K
Sbjct: 409 QEENEKKQKEQADEDKEKRQKDERK 433
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 34.8 bits (80), Expect = 0.25
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 818 LREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSK-EKPEESNEKTKRHK 876
L E E+ ++ +P K + +P K K + K KP +S E T+
Sbjct: 38 LDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSH 97
Query: 877 IKSEPKENDSSK 888
KS+ +S +
Sbjct: 98 PKSKAPSTESEE 109
Score = 30.1 bits (68), Expect = 7.0
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 802 EEKEKVEMEKEKRKKILRERE-EEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS 860
+E E+ E K +K R + + ++K + + K K + +
Sbjct: 39 DELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHP 98
Query: 861 SKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTI 895
+ P +E+ + + +P + G+I
Sbjct: 99 KSKAPSTESEEEEEPEETPDPIASIGGWWSLWGSI 133
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 34.5 bits (80), Expect = 0.25
Identities = 22/100 (22%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
+R + +E +QE++ +E ++++ + + E E+ +I ++I+ E++
Sbjct: 64 KRKEERREGRAVLQEQI-EEREKRRQEEYE--ERLQEREQMDEII------ERIQEEDEA 114
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEK 845
+ + ++EK+KK+ E +E EE+ K+ + E+ E K
Sbjct: 115 EAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELK 154
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 33.1 bits (76), Expect = 0.26
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 802 EEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
+EK K E E E+ ++ E++ + EE+ A K+ K +K ++ +K K+ K K KE
Sbjct: 56 DEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAK-KGNKKEEKEG 114
Query: 862 KEKPEESNEKTKRHKIKSEPKENDS 886
+ EES+++ + + + + +
Sbjct: 115 SKSSEESSDEEEEGEEDKQEEPVEI 139
Score = 32.3 bits (74), Expect = 0.46
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 798 QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE 857
Q K EEK++ + EK +K+ R+++++K+++ K +K E+ K+ + E +
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEG 128
Query: 858 NDSSKEKPEESNEK 871
+ +E+P E EK
Sbjct: 129 EEDKQEEPVEIMEK 142
>gnl|CDD|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase
domains [DNA replication, recombination, and repair].
Length = 593
Score = 34.5 bits (80), Expect = 0.27
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLE 311
IT+ + +++L IA D E + + +++ ++ + L E L
Sbjct: 6 ITDLAVLNAWLTKLNAAANIAFDTETDGLDPHGADLVGLSVASEEEAAYIPLLHGPEQLN 65
Query: 312 V---LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
V L +L D+ I KV D K L G+ FDT
Sbjct: 66 VLAALKPLLEDEGIKKVGQNLKYDYKVLAN-LGIEPGVAFDT 106
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 33.5 bits (77), Expect = 0.28
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 822 EEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEP 881
E +K+++ ++I+ K E ++ + K K K+ D K+K ++ + K + E
Sbjct: 59 EAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Query: 882 KENDSSKGKS 891
++ KS
Sbjct: 119 EDKLEDLTKS 128
Score = 33.5 bits (77), Expect = 0.28
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 802 EEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
E E + +KE ++I + ++E +E+Q K K K ++ +K K K + K++ S
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDK----KDDKKDDKSE 111
Query: 862 KEK-PEESNEKTKRHKIKSEPKE 883
K+ E ++ K SE
Sbjct: 112 KKDEKEAEDKLEDLTKSYSETLS 134
Score = 32.7 bits (75), Expect = 0.49
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 776 TPQVKTEPEENVKITQEPVVLKQIKSE-EKEKVEMEKEKRKKILREREEEKEEQPATKKI 834
TP E E K K++ E EK K E E++++ K +++ ++K+++ KK
Sbjct: 50 TPIYDAEYTEAKK------KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKD 103
Query: 835 KV--EKPEESNEKTKQHKIKSEPKENDSSKEKPEE 867
+K E+ +EK + K++ K + E
Sbjct: 104 DKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSE 138
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 34.7 bits (78), Expect = 0.28
Identities = 50/217 (23%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 742 ETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK----TEPEENVKITQEPVVLK 797
E P Q K K Q+++ K++ ++K++A K E E + QE K
Sbjct: 62 EQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEE-HK 120
Query: 798 QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKS---- 853
Q K+E+ E+++ E+EK++ L++ + EK+++ A K K EK E++ + + ++
Sbjct: 121 QWKAEQ-ERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEEIVV 179
Query: 854 -------------EPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDF 900
EPK ++ +P E ++ K K K+++S + ++ V
Sbjct: 180 KKVANDRSAAPAPEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQV-- 237
Query: 901 SKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRKP 937
V K + + + K K+NK+K S+ P
Sbjct: 238 --VEQPKVVTEEPHQQAAPQEKKNKKNKRKSESENVP 272
Score = 32.0 bits (71), Expect = 2.1
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 780 KTEPEENVKITQEPVVLKQIKSEEKEKVEME----KEKRKKILREREEEKEEQPA---TK 832
+ E ++++T++P ++++K EK+K + + E +K+ ++ EKE + A K
Sbjct: 51 RKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAK 110
Query: 833 KIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSG 892
K ++ E K +Q +I+ E ++ ++ +K + +K K K + K + K +
Sbjct: 111 KRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTP 170
Query: 893 GTISTVDFSKVNYNKYM--------------AKPGKSNQKKKGKGGKQNKKKKNSK 934
+ K N A+P + Q+ GK K+NKKK S+
Sbjct: 171 APVEEEIVVKKVANDRSAAPAPEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESE 226
Score = 32.0 bits (71), Expect = 2.1
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 13/187 (6%)
Query: 756 KAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRK 815
KA QE++ KE E+K+ D Q + + E+ VK + K K+ VE E+ K
Sbjct: 123 KAEQERIQKEQ-EKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVE-EEIVVK 180
Query: 816 KILREREEEKEEQPATKKIKVEKPEE-----SNEKTKQHKIKSE------PKENDSSKEK 864
K+ +R +P T +P E + +K K++K KSE P + E+
Sbjct: 181 KVANDRSAAPAPEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQVVEQ 240
Query: 865 PEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGG 924
P+ E+ + E K + + + + V P NQKK K
Sbjct: 241 PKVVTEEPHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVETTPPASENQKKNKKDK 300
Query: 925 KQNKKKK 931
K+++ +K
Sbjct: 301 KKSESEK 307
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 33.5 bits (76), Expect = 0.29
Identities = 17/102 (16%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
T+ EE ++ E + + E++E+ E+E++ ++ RE + + + ++ + + +
Sbjct: 19 TDAEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQ 78
Query: 841 ESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPK 882
E ++ + E + +E+ E E+ ++ K ++E +
Sbjct: 79 EEERAREKEEKAKRKAEEEEKQEQ--EEQERIQKQKEEAEAR 118
Score = 32.4 bits (73), Expect = 0.65
Identities = 26/135 (19%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 755 AKAIQEKVDKENAEQKKIDALT--PQVKTEPEENVKITQEPVVLK-QIKSEEKEKVEMEK 811
A+ +E+ ++E EQ++ D L + EE ++ +E + + E++EK + +
Sbjct: 35 AREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKA 94
Query: 812 EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEK 871
E+ +K +E +E ++Q + + + E ++ + +E K++ EE ++
Sbjct: 95 EEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEEIMKR 154
Query: 872 TKRHKIKSEPKENDS 886
T++ ++ + K+ D
Sbjct: 155 TRKSEVSPQVKKEDP 169
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 34.4 bits (79), Expect = 0.34
Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 23/196 (11%)
Query: 751 SKEYAKAIQEKVDKE-NAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
+E I++ E EQK + E + ++ QE LK+ + +K ++E
Sbjct: 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKK-ELEQEMEELKERERNKKLELEK 568
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
E ++ K L++ E + KKI K +S E + K + +KP
Sbjct: 569 EAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLK-----ETKQKIPQKPTNFQ 623
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYN----------KYMAKPGKSNQKK 919
K++ G+ G + + +K N + K K+ K
Sbjct: 624 ADKIGDKVRIR------YFGQKGKIVQILGGNKWNVTVGGMRMKVHGSELEKINKAPPPK 677
Query: 920 KGKGGKQNKKKKNSKR 935
K K K K +
Sbjct: 678 KFKVPKTTKPEPKEAS 693
Score = 32.5 bits (74), Expect = 1.5
Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 8/149 (5%)
Query: 728 SNKYQKIKLKT----SRFETPYQRFLKS--KEYAKAIQEKVDKENAEQKKIDALTPQVKT 781
+ +++K + E Q LK+ KE I+E +K+ + K+I ++ VK
Sbjct: 549 EQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKL 608
Query: 782 EPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEE 841
+ E KI Q+P + K +K ++ +K K + + ++KV E
Sbjct: 609 K-ETKQKIPQKPTNFQADKIGDKVRIRYFGQKGKIVQILGGNKWNVTVGGMRMKVHGSEL 667
Query: 842 SNEKTKQHKIKSEPKENDSSKEKPEESNE 870
K + E E S
Sbjct: 668 EKINKAPPP-KKFKVPKTTKPEPKEASLT 695
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 34.3 bits (79), Expect = 0.41
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 796 LKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
K++K E K + + +KE E E E EE+ +K + + K + E
Sbjct: 436 SKKLKKENKNEFKEKKESD----EEEELEDEEEAKVEK------VANKLLKRSEKAQKEE 485
Query: 856 KENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKS 915
+E + +E P KT KS K++ K S + SK A
Sbjct: 486 EEEELDEENP---WLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISK-------AAVKVK 535
Query: 916 NQKKKGKGGKQNKKKKN 932
+KKK K + +
Sbjct: 536 KKKKKEKSIDLDDDLID 552
Score = 33.5 bits (77), Expect = 0.62
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 759 QEKVDKENAEQKKIDALTPQVKT--EPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKK 816
++ D + + ++K + EEN + +K ++ E K E + ++
Sbjct: 341 DDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLS----MKFMQRAEARKKEENDAEIEE 396
Query: 817 ILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHK 876
+ RE E E+E E+P + N ++ ++ KE +S K K E NE ++ +
Sbjct: 397 LRRELEGEEESDEEEN----EEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKE 452
Query: 877 IKSEPKEND 885
E + D
Sbjct: 453 SDEEEELED 461
Score = 32.7 bits (75), Expect = 1.2
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 12/139 (8%)
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKIL 818
E +KE +K + K + E + + E K E+ +++ ++ +
Sbjct: 427 PENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEA--KVEKVANKLLKRSEKAQKE 484
Query: 819 REREEEKEEQPA----------TKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEES 868
E EE EE P KK +K S +KI + K+K +
Sbjct: 485 EEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSI 544
Query: 869 NEKTKRHKIKSEPKENDSS 887
+ + K +
Sbjct: 545 DLDDDLIDEEDSIKLDVDD 563
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 33.5 bits (76), Expect = 0.43
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEEN---VKITQEPVVLKQIKSEEKEKVE 808
+E A+ E+ Q + A + T P E V+ ++ K K+ E +
Sbjct: 109 EESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQK 168
Query: 809 MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEES 868
E K + +E +++++ K + E+ +K + + + D +K KP+E
Sbjct: 169 TPVETEKIASKVKEAKQKQKALPK-----QTAETQSNSKPIETAPKADKADKTKPKPKEK 223
Query: 869 NEKT 872
E+
Sbjct: 224 AERA 227
Score = 30.0 bits (67), Expect = 6.3
Identities = 17/121 (14%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 768 EQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEE 827
++ LT + + E+ K + + E+ + +++ ++ ++ +
Sbjct: 107 GVEESAQLTAEQRQLLEQ--MQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTA 164
Query: 828 QPATKKIKVEK-PEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDS 886
+ ++ EK + E ++ K + S KP E+ K K++PK +
Sbjct: 165 EAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKA-DKADKTKPKPKEK 223
Query: 887 S 887
+
Sbjct: 224 A 224
Score = 29.7 bits (66), Expect = 7.9
Identities = 22/153 (14%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
++ E A + K ++ + ++++A + E + E Q+ +E+++ +E
Sbjct: 67 ENGETAADLPPKPEERWSYIEELEAREVLINDPEEPSNGGGVEE--SAQLTAEQRQLLEQ 124
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
+ + + EQ + + + E+ +K + + + P E + K +E+
Sbjct: 125 MQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAK 184
Query: 870 EKTKRHKIKSEPKENDSSKGKSGGTISTVDFSK 902
+K K ++ +++S ++ D +K
Sbjct: 185 QKQKALPKQTAETQSNSKPIETAPKADKADKTK 217
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 34.2 bits (79), Expect = 0.45
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 6/176 (3%)
Query: 748 FLKSKEYAKAIQEKVDKEN--AEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
LK K I++ ++ + K L ++++ + I E + + + EK
Sbjct: 120 KLKVKGNNILIEQVLNNPEFDHFKNKSPELQKKLQSFGFPQLLIEFEVNDISEEQEFEK- 178
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
E E+ +K +E E E++ + KVEKP+ + K KIKS + K
Sbjct: 179 FEEAINEEVEKAAQEALEA-EKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIKPLIKINE 237
Query: 866 EESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKG 921
EE+ K + + K E KE S G++ I D++ K + + +K G
Sbjct: 238 EETRVKVEGYIFKIEIKELKS--GRTLLNIKVTDYTSSLILKKFLRDEEDEKKFDG 291
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 33.7 bits (77), Expect = 0.47
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K E A E+ K+ E K A + K E E K +E + +++ K E
Sbjct: 105 KQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEA 164
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE 857
+K+ + + E K + A K K E+ + E K K +E
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA-KAAAEAAA 211
Score = 32.9 bits (75), Expect = 0.78
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
K+ + +E + AEQ + L + E ++ K E+ K +
Sbjct: 71 KKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA 130
Query: 812 EKRKKILRERE-------EEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEK 864
E + K E E +++ E+ A K E +++ E K+ + +++ K +K K
Sbjct: 131 EAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Query: 865 PEESNEKTKRHKIKSE 880
EE+ K + K K+
Sbjct: 191 AEEAKAKAEAAKAKAA 206
Score = 32.5 bits (74), Expect = 1.0
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKIL 818
E + + + +++ + + K QE + ++EE EK ++ R+K L
Sbjct: 35 GEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKEL 94
Query: 819 RER----EEEKEEQPATKKIKVEKPEESNEKTKQH---KIKSEPKENDSSKEKPEESNEK 871
+R + K+ + A K+ + ++ + K KQ K K+E + +KE+ ++ E+
Sbjct: 95 EQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEE 154
Query: 872 TKRHKIKSEPK 882
+ K +E K
Sbjct: 155 EAKAKAAAEAK 165
Score = 31.0 bits (70), Expect = 3.5
Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
+++ + Q+K EQ++ L Q E E+ E K+++ +
Sbjct: 47 AVAQQANRIQQQKKPAAKKEQERQKKL-EQQAEEAEKQRA--AEQARQKELEQRAAAEKA 103
Query: 809 MEK--EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPE 866
++ + K+ ++++ +E + K E EK + + K + E ++ +
Sbjct: 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQA-EEEAKAKAAA 162
Query: 867 ESNEKTKRHKIKSEPK 882
E+ +K K K+E +
Sbjct: 163 EAKKKAAEAKKKAEAE 178
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 33.7 bits (78), Expect = 0.47
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 749 LKSKEYAKAIQEKVDKENAEQ-KKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKV 807
L++KE ++ ++++E E+ ++ L ++ EE + E + K+ E+KEK
Sbjct: 54 LEAKEEVHKLRAELERELKERRNELQRLERRLLQR-EETLDRKMESLDKKEENLEKKEK- 111
Query: 808 EMEKEKRKKILREREEEKEEQPATKKIKVEK 838
E ++K L E+EEE EE A ++ ++E+
Sbjct: 112 --ELSNKEKNLDEKEEELEELIAEQREELER 140
Score = 33.0 bits (76), Expect = 0.80
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 37/139 (26%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
++ ++E AK I E+ KE AE K K+ E KE
Sbjct: 25 KKLGSAEELAKRIIEEAKKE-AETLK-------------------------KEALLEAKE 58
Query: 806 KVEMEKEKRKKILREREEE----------KEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
+V + + ++ L+ER E +EE K ++K EE+ EK K+ ++ ++
Sbjct: 59 EVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEK-KEKELSNKE 117
Query: 856 KENDSSKEKPEESNEKTKR 874
K D +E+ EE + +
Sbjct: 118 KNLDEKEEELEELIAEQRE 136
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 32.5 bits (74), Expect = 0.47
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 778 QVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVE 837
VK E +E+ + +E + + EE E +E E+E I+ + EEE+E++ +K
Sbjct: 42 DVKDEKQEDDEEEEEE---DEEEIEEPEDIEDEEE----IVEDEEEEEEDEEDNVDLKDI 94
Query: 838 KPEESNEKTKQHK-------IKSEPKENDSSKEKPE 866
+ + N+ + I K+N+ SK+ E
Sbjct: 95 EKKNINDIFNSTQDDNAQNLISKNYKKNEKSKKTAE 130
Score = 32.1 bits (73), Expect = 0.67
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 805 EKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEK 864
E V++ ++ I++E E+ K+E+ + + E+ EE E+ + + + E E++ +E+
Sbjct: 24 EHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEE 83
Query: 865 PEESNEKTKRHKIKSEPKENDSSK 888
EE N K + K+ +S++
Sbjct: 84 DEEDNVDLKDIEKKNINDIFNSTQ 107
>gnl|CDD|176652 cd06140, DNA_polA_I_Bacillus_like_exo, inactive DEDDy 3'-5'
exonuclease domain of Bacillus stearothermophilus DNA
polymerase I and similar family-A DNA polymerases.
Bacillus stearothermophilus-like Polymerase I (Pol I), a
subgroup of the family-A DNA polymerases, contains an
inactive DnaQ-like 3'-5' exonuclease domain in the same
polypeptide chain as the polymerase region. The
exonuclease-like domain of these proteins possess the
same fold as the Klenow fragment (KF) of Escherichia
coli Pol I, but does not contain the four critical
metal-binding residues necessary for activity. The
function of this domain is unknown. It might act as a
spacer between the polymerase and the 5'-3' exonuclease
domains. Some members of this subgroup, such as those
from Bacillus sphaericus and Thermus aquaticus, are
thermostable DNA polymerases.
Length = 178
Score = 32.6 bits (75), Expect = 0.51
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 269 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 328
E+A+ +E + + ++ Y + DL L E L D+ I KV H
Sbjct: 4 DEVALYVELLGENYHTADIIGLALANGGGAYYIPLELALLDLAALKEWLEDEKIPKVGHD 63
Query: 329 ADSDIKWLQKDFGLYVVGM-FDTHQACKFLPMPRQSLAYLL 368
A L K G+ + G+ FDT A AYLL
Sbjct: 64 AKRAYVAL-KRHGIELAGVAFDTMLA-----------AYLL 92
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 33.8 bits (78), Expect = 0.55
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 800 KSEEKEKVEMEK-EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN 858
+ EE+ VE+E + K +E+E EE P+ + E P+++ + K +K + E
Sbjct: 234 EREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Query: 859 DSSKEKP 865
EKP
Sbjct: 294 LFWFEKP 300
Score = 33.4 bits (77), Expect = 0.74
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 793 PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK 852
P K++K E E E E+E +I E + +Q + + S EK K +
Sbjct: 220 PFFTKKLK-ETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTE 278
Query: 853 SEPKENDSSKEKPEES 868
K ++K EE
Sbjct: 279 DLDKLEILKEKKDEEL 294
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 33.6 bits (77), Expect = 0.61
Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 29/161 (18%)
Query: 747 RFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEK 806
RF ++++ +A + AE + T + + E E + +QI E
Sbjct: 236 RFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEA---------LQEQIDELESSI 286
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN-------- 858
E+ E K + + ++ EE ++ E EE K + ++ + + N
Sbjct: 287 EEVLSE-IKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVELLPDAENNVAKLQALV 345
Query: 859 DSSKEKPEESN-----------EKTKRHKIKSEPKENDSSK 888
+S E+ E ++ + K K+ KE+++ +
Sbjct: 346 VASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDETQR 386
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 33.5 bits (76), Expect = 0.61
Identities = 18/150 (12%), Positives = 56/150 (37%), Gaps = 7/150 (4%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDA----LTPQVKTEPEENVKITQE---PVVLKQIKS 801
++++E K + +A +++ A + VK E +++ + + +
Sbjct: 512 IRNEEELKGVLGMKFMRDASNRQMAASKISVADLVKVENGDDIDVGELDEVGGDAIYANA 571
Query: 802 EEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
+E + +++RK R+R+E+ + + +++ +K + + E +
Sbjct: 572 GRREVFPVVEQRRKLAPRKRKEDFVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATE 631
Query: 862 KEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
P + + +IK + +
Sbjct: 632 NFNPWLDRKMRRIKRIKKKAYRRIRRDKRL 661
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 32.8 bits (75), Expect = 0.65
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 808 EMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEE 867
E + K + + + +E E + K + + E EK + + E E + K E
Sbjct: 4 ECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDEN 63
Query: 868 SNEKTKRHKIKSE 880
+ K + K+++E
Sbjct: 64 NKLKEENKKLENE 76
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 32.7 bits (75), Expect = 0.69
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 796 LKQIKSE----------EKEKV------EMEKEKRKKILREREEEKEEQPATKKIKVEKP 839
LK++KS+ E++ V E + + ++ ER ++K+++ K K
Sbjct: 139 LKEVKSKVCPVCGKPYSEEDVVPLNPTEEEVELLKARLEEERAKKKKKKKKKKTKKNNAT 198
Query: 840 EESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
S E T + + + + E K KR P S KS
Sbjct: 199 GSSAEATV--SSAVPTELSSGAGQVGEAKKLKKKR---SIAPDNEKSEVYKS 245
>gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional.
Length = 167
Score = 32.2 bits (73), Expect = 0.70
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 753 EYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQE-----PVVLKQIKSEEKEKV 807
YA IQ ++D+ +++ AL VK E EE + +++++E KEK+
Sbjct: 41 AYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKL 100
Query: 808 EMEKEKRKKILREREEEKEEQPATKKIK 835
E E+ KR+ + ER+ + E A +K
Sbjct: 101 E-EQIKRRAEMAERKIAQAEAQAAADVK 127
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 33.5 bits (77), Expect = 0.71
Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 17/126 (13%)
Query: 811 KEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNE 870
+R++ E+ + K+E+ +K + P+ + + + +E
Sbjct: 306 PHRRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDE--- 362
Query: 871 KTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKK 930
KE D + G ST + + +A P + +G G++++ +
Sbjct: 363 -----------KEPDPQEEADGQGSSTDPAGDIFRIRVLAPP---QARARGASGRRSRTR 408
Query: 931 KNSKRK 936
+S+ +
Sbjct: 409 SDSRGR 414
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 32.9 bits (75), Expect = 0.87
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
K EK+ E KI ++ + ++ + K E +E N + + K +P +N
Sbjct: 32 KQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91
Query: 860 SSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVN 904
EKP++ +K + +P + + + VDFS ++
Sbjct: 92 EEIEKPKDEPKKPDKKPQADQPNNVHADQPN----NNKVDFSDLD 132
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 33.1 bits (76), Expect = 0.88
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTE--PEENVKITQEPVVLKQIKSEEKEKVEM 809
++ AKA + K+ + ++K++ L +++ E P ++I +P K ++KE+++
Sbjct: 497 RDAAKA-EMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQR 555
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
EKE+++ + ++ K ++ KK K E K K K P E +E
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKK--------ELEKLEKAKIPPAEFFKRQEDK---- 603
Query: 870 EKTKRHKIKSEPKEND-SSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQ 926
S E + G IS + K+ +K K K +++ KGGK
Sbjct: 604 --------YSAFDETGLPTHDADGEEISKKERKKL--SKEYDKQAKLHEEYLAKGGKS 651
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 32.3 bits (74), Expect = 0.98
Identities = 23/145 (15%), Positives = 60/145 (41%), Gaps = 7/145 (4%)
Query: 729 NKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVK 788
+ +++ K + K+ E + ++E + + +KK + +++ E +
Sbjct: 131 EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQE 190
Query: 789 ITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQ 848
+E + L + E +++ + E+ ++ ++ +E EE + E E K+
Sbjct: 191 YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN-------ELRELEKK 243
Query: 849 HKIKSEPKENDSSKEKPEESNEKTK 873
K ++ +EK EE E+ +
Sbjct: 244 IKALRAKEKAAKRREKREELKERAE 268
Score = 30.4 bits (69), Expect = 4.9
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 756 KAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM------ 809
++E +K +++ D + +V+ E+ +I + L++ E KEK
Sbjct: 48 AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGR 107
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQ-HKIKSEPKENDSSKEKPEES 868
+ ++ + E++++ T + + E ++ E K+ K +EN+ KE E
Sbjct: 108 SIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEI 167
Query: 869 NE-KTKRHKIKSEPKE 883
+E K K +I + +E
Sbjct: 168 DELKKKAREIHEKIQE 183
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 33.1 bits (76), Expect = 1.0
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 732 QKIKLKTSRFETPYQRFLKSKEYA-KAIQEKV-------DKENAEQKKIDALTPQVKTEP 783
+I+ + E R KEY K IQE ++ + +K+I+ L + K E
Sbjct: 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK-KEEL 866
Query: 784 EENVKITQEPVVLKQIKSEEKEKVEMEKE--KRKKILREREEEKEEQPATKKIKVEKPEE 841
EE ++ + ++ E +++KE + + LRE E + EE A + K ++ E
Sbjct: 867 EEELEELE-----AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
Query: 842 SNEK--TKQHKIKSEPKENDSSKEKPEE 867
K + ++ +E PEE
Sbjct: 922 LKAKLEALEEELSEIEDPKGEDEEIPEE 949
Score = 31.6 bits (72), Expect = 2.7
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 790 TQEPVVLKQIKS--EEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNE-KT 846
Q+ + +Q+ S EE EK+ E + +K L E E+ EE KKIK EE K
Sbjct: 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE--LNKKIKDLGEEEQLRVKE 294
Query: 847 KQHKIKSE-------PKENDSSKEKPEESNEKTK--RHKIKSE 880
K ++++E E + E EE K + K+ +E
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
>gnl|CDD|223941 COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain
L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 606
Score = 32.7 bits (75), Expect = 1.0
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 939 LFLWLSQNILQLFI-WEL 955
L L LS N+L LF+ WEL
Sbjct: 119 LGLVLSDNLLLLFVFWEL 136
>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1747
Score = 32.8 bits (75), Expect = 1.1
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 776 TPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIK 835
P +P VL Q ++EE + E E+ + +I+R+ E K + P K +
Sbjct: 1624 IPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETER-RADEIVRKMAENKPDLPDGKTEQ 1682
Query: 836 VEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNE 870
+ E+ + + E +S +P+ E
Sbjct: 1683 AVRDIAGQERDRAAISEREAALPESVLREPQRERE 1717
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 32.6 bits (75), Expect = 1.1
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 747 RFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEK 806
F + KE K ++E++ + E +KI L K + ++ E + E KEK
Sbjct: 328 DFPELKEELKELEEELKELEEELEKIKKL--LKKLPKKARGQLPPEKREQLEKLLETKEK 385
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEK 838
+ E E+ ++ L+E +EE E + KI V K
Sbjct: 386 LSEELEELEEELKELKEELESLYSEGKISVNK 417
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 32.6 bits (74), Expect = 1.1
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 12/138 (8%)
Query: 753 EYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKE 812
E +K +E +KE A K D + K K + + KQ + +E E EK
Sbjct: 33 EISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAK-AKAAALAKQKREGTEEVTEEEKA 91
Query: 813 KRKK-----------ILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
K K L +++ E E+ ++ K + + + ++ K +
Sbjct: 92 KAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTE 151
Query: 862 KEKPEESNEKTKRHKIKS 879
+ EE ++ K K+
Sbjct: 152 EVTEEEEETDKEKAKAKA 169
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 32.8 bits (75), Expect = 1.2
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 751 SKEYAKAIQEK---VDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKV 807
+ K N + K + L P VK + K+ E ++K+ +K +
Sbjct: 463 GNRNFMQNINDSQLLPKINITKAKDEILNPVVKRALLQARKVVNE--LVKKYGPPDKIVI 520
Query: 808 EMEKE--------KRKKILREREEEKEEQPATKKIKVEKPEESNEKTK 847
EM +E + K ++ E+K ++ A+ K EE E +
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSS 568
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 32.3 bits (74), Expect = 1.2
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 769 QKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQ 828
Q+KI AL Q+K I ++ +K + K K E + EK ++E+++EK+++
Sbjct: 283 QEKIKALKYQLK---RLKKMILLFEMISD-LKRKLKSKFERDNEKLDAEVKEKKKEKKKE 338
Query: 829 PATKKIKVEKPEESNEKTK-QHKIKSEPKE 857
KK ++E+ EE EK + Q K E K
Sbjct: 339 EKKKK-QIERLEERIEKLEVQATDKEENKT 367
Score = 31.6 bits (72), Expect = 2.2
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 804 KEKVEMEKEKRKK----ILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
+EK++ K + K+ IL ++ K + + + + K E K+ +
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDN---EKLDAEVKEKKKEKKKEE 339
Query: 860 SSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNY 905
K++ E E+ ++ ++++ KE + K + GT SK+NY
Sbjct: 340 KKKKQIERLEERIEKLEVQATDKEEN--KTVALGT------SKINY 377
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.0 bits (73), Expect = 1.2
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
E E RK+ LR EE E +KK E++++ T +++D EE
Sbjct: 51 EDELRKRDLRAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDD------EEDE 104
Query: 870 EKTKRHKIKSEPKENDSSKGKSGG 893
K KR + + + D S S
Sbjct: 105 IKRKRIEEDARNSDADDSDSSSDS 128
>gnl|CDD|153363 cd07679, F-BAR_PACSIN2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 2 or Syndapin II is expressed ubiquitously and is
involved in the regulation of tubulin polymerization. It
associates with Golgi membranes and forms a complex with
dynamin II which is crucial in promoting vesicle
formation from the trans-Golgi network. PACSIN 2
contains an N-terminal F-BAR domain and a C-terminal SH3
domain. F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 258
Score = 32.0 bits (72), Expect = 1.3
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 767 AEQKKIDALTPQVK----TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRERE 822
+E +K+ L +VK E E +K Q+ KQ+ KE E E RK +
Sbjct: 71 SEAEKVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAK 130
Query: 823 EEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPK 882
+ KE + A K EE +++ K++P N +K ++ EK K+ +K++ K
Sbjct: 131 KLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEK 190
Query: 883 ENDSSKGKSGGT 894
S K T
Sbjct: 191 YEKSLKELDQTT 202
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 32.5 bits (74), Expect = 1.3
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPE 866
V+ E+EK +K R+ E E + A ++ K + E T + + K+KP+
Sbjct: 330 VKKEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPK 389
Query: 867 ESNEKTKRH------KIKSEPKENDSSKGK 890
+ + H K E K N +GK
Sbjct: 390 KPSVDKPLHPSWEAKKKAKEKKANAKFQGK 419
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 32.8 bits (74), Expect = 1.3
Identities = 20/90 (22%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 761 KVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE 820
+++KENA +K ++ + K E + +E + ++++ E+E++E E+ +R+++ R+
Sbjct: 439 RIEKENAHRKALEMKILE-KKRIERLEREERERLERERMERIERERLERERLERERLERD 497
Query: 821 REE-------EKEEQPATKKIKVEKPEESN 843
R E E+E ++ ++EK ++
Sbjct: 498 RLERDRLDRLERERVDRLERDRLEKARRNS 527
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 32.2 bits (74), Expect = 1.5
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 796 LKQIKSEEKEKVEMEKE--KRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKS 853
L++I+ E +E+ E E + + +K + E E++ E+ A K IK K EE+ +
Sbjct: 63 LEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAE 122
Query: 854 EPKE--------NDSSKEK 864
EP+ ND++ E
Sbjct: 123 EPEPPLRPRLIVNDATPEA 141
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 31.4 bits (71), Expect = 1.7
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 754 YAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEK 813
Y K + +D E +K++ +++ E KI E + + EEK K E+ K +
Sbjct: 96 YEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGE 155
Query: 814 RKKILREREEEKEEQPAT 831
+ + ++ E E PA
Sbjct: 156 PLEEVIDKLEYPVESPAD 173
Score = 29.5 bits (66), Expect = 6.4
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K+ + + EK+ + +DA+ +++ +E +KI VLK+IK E +
Sbjct: 87 KAGQLVRETYEKLKEG-----GLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKE 141
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQH 849
E++ K + E EE + VE P + + K H
Sbjct: 142 LLEEKLKGEVIKGEPLEEVIDKLEYPVESPADLLHEIKIH 181
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 31.8 bits (72), Expect = 1.7
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPA-TKKIKVEKPEESNEKTKQHKIKSEPKE- 857
K+ +K+ E +K KK +E K ++ A T K K +KTK K + K
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVK-TTTKKVT 64
Query: 858 -NDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTV 898
E ++ + K K ++ E + K S +
Sbjct: 65 VKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKL 106
Score = 29.5 bits (66), Expect = 8.2
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Query: 777 PQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKV 836
+ K ++ ++P K S+E K + K ++ K ++ + K
Sbjct: 2 AETKKTTKKKTTEEKKPAAKKATTSKETAK-TKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
Query: 837 EKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTK 873
+K EKT+ K +S K+ + E E +
Sbjct: 61 KKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASN 97
>gnl|CDD|223994 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational
modification, protein turnover, chaperones].
Length = 647
Score = 32.3 bits (74), Expect = 1.7
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 773 DALTPQVKTEPEE--NVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPA 830
D P VK+ + ++ + EP V K + + E+ + I + E E+P
Sbjct: 33 DEAVPIVKSAAFQRRHILLIGEPGVGKS-MLAQAMSFLLPLEELEDIRVKPNPEDPERPK 91
Query: 831 TKKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
+ + +PE +E K+E K S
Sbjct: 92 VETVPAGRPESFSE---LLGQKAEEKAEYLS 119
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 31.2 bits (71), Expect = 1.8
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 795 VLKQIKSEEKEKV-EMEKEKRKKILREREEEKEEQPATKKIKV--EKPEESNEKTKQHKI 851
++K+I E +E+ E+ +E R++ + +EE K E A + I+ K E+ E+ +Q I
Sbjct: 7 LIKKILREAEEEAEEILEEAREEAEKIKEEAKRE--AEEAIEEILRKAEKEAERERQRII 64
Query: 852 KS 853
S
Sbjct: 65 SS 66
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 31.8 bits (73), Expect = 1.8
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 796 LKQIKSEEKEKVEMEKEKRKKILRE--REEEKEEQPATKKIKVEKPEESNEKTKQHKIKS 853
L + + EE E + +RKK+ ++ + E+K E+ +K +K E+ K +
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Query: 854 EPKEND 859
K +
Sbjct: 453 TKKVDP 458
>gnl|CDD|115185 pfam06513, DUF1103, Repeat of unknown function (DUF1103). This
family consists of several repeats of around 30 residues
in length which are found specifically in
mature-parasite-infected erythrocyte surface antigen
proteins from Plasmodium falciparum. This family often
found in conjunction with pfam00226.
Length = 215
Score = 31.4 bits (70), Expect = 1.8
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 747 RFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEK 806
+ + S++ K I+EKV+K E+ K + + E N K+ ++++++K E K++
Sbjct: 21 KVIGSEKTQKEIKEKVEKRVKEKCKKKVKKGIKENDTEGNDKVKGPEIIIEEVKEEIKKQ 80
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPE 866
VE ++E + E ++ +I E+ +E +K + IK E + + PE
Sbjct: 81 VE-------DGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEDGIKENDTEGNDKVKGPE 133
Query: 867 ESNEKTK---RHKIKSEPKENDS 886
E+ K + +++ KEND+
Sbjct: 134 IITEEVKEEIKKQVEEGIKENDT 156
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 31.9 bits (72), Expect = 1.8
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 21/168 (12%)
Query: 727 GSNKYQKIKLK-TSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDAL--------TP 777
G NK++ + + ++F K E A A+ E+ D+ A KK T
Sbjct: 27 GFNKFRGERWRLQNKFLLAAGSR-KKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTV 85
Query: 778 QVKTEPEENVK--ITQEPVVLKQIKSEEKEKVEMEKEKRKKI---LREREEEKEEQPATK 832
+EP E + E L +KE + + R+K + EEEK E+ K
Sbjct: 86 VEISEPLEEGSELVVNEDAAL------DKESKKTPRRTRRKAAAASSDVEEEKTEKKVRK 139
Query: 833 KIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSE 880
+ KV+K +E E S+ +E++ ES E+ K E
Sbjct: 140 RRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGE 187
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.2 bits (73), Expect = 1.9
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
TE E KI E + ++ K EEK K EKE +K ++E + + Q P+
Sbjct: 4 TESEAEKKILTEEELERKKKKEEKAK---EKELKKLKAAQKEAKAKLQAQQASDGTNVPK 60
Query: 841 ESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKR 874
+S +K+++ + EN P+ + KR
Sbjct: 61 KSEKKSRK---RDVEDENPEDFIDPDTPFGQKKR 91
Score = 29.9 bits (67), Expect = 9.3
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS 860
+E+K E E E++KK +EEK ++ KK+K K+ K K + ++
Sbjct: 8 AEKKILTEEELERKKK-----KEEKAKEKELKKLKA--------AQKEAKAKLQAQQASD 54
Query: 861 SKEKPEESNEKTKRHKIKSEPKEN 884
P++S +K+++ ++ E E+
Sbjct: 55 GTNVPKKSEKKSRKRDVEDENPED 78
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 31.9 bits (72), Expect = 1.9
Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 16/210 (7%)
Query: 745 YQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEK 804
Y FL +KE+ + + + D E+ E + + +E + E + + I E++
Sbjct: 78 YVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDE 137
Query: 805 EKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS---- 860
+ E E + L + E E +E+ ++ + + +ES E+ + K + +D
Sbjct: 138 ADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKL 197
Query: 861 --------SKEKPEESNEKTKRHKIK--SEPKEN--DSSKGKSGGTISTVDFSKVNYNKY 908
+ E EE+ + + E+ D SG + + Y +
Sbjct: 198 DEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDF 257
Query: 909 MAKPGKSNQKKKGKGGKQNKKKKNSKRKPF 938
K +K G + + + +
Sbjct: 258 FDPKEKDKKKDAGDDAELEDDEPDKEAVKK 287
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 31.4 bits (71), Expect = 2.0
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 750 KSKEYAKAIQ-EKVDKENAEQKKIDA---LTPQVKTEPEENVKITQEPVVLKQIKSE-EK 804
+ +E AK E+ K AE++K + + +VK E E + T + + ++ E
Sbjct: 53 REREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDEN 112
Query: 805 EKVEMEKEKRKKILR-EREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKE 863
E+ E E K +++ R +R+ E+ E+ +K ++EK E+ ++ +++ PK + + +
Sbjct: 113 EEEEYEAWKLRELKRIKRDREEREEMEREKAEIEKMRNMTEEERRAELRKNPKVSTNKAK 172
Query: 864 K 864
K
Sbjct: 173 K 173
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 30.3 bits (69), Expect = 2.0
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS 860
E+EK +KE K I +E+ + +++Q K + + S E+ +++++ KE +
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 861 SKEKPEESNEKTKRHKIKSE 880
+ + K + K+ SE
Sbjct: 61 LEAELARRELKAEAKKMLSE 80
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 29.8 bits (67), Expect = 2.0
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 795 VLKQIKSEEK---EKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKI 851
V+K+I EK E++E KE+ KKI+R+ +EE KKI+ E +++ E+ Q I
Sbjct: 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEE------AKKIEEEIIKKAEEEA-QKLI 56
Query: 852 KSEPKENDSSKEKPEESNEK-TKRHKIKSEPK 882
+ + KE + +K E EK + K+K+E
Sbjct: 57 EKKKKEGEEEAKKILEEGEKEIEELKVKAEEN 88
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 32.1 bits (73), Expect = 2.0
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 799 IKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN 858
+ ++E V +K +E + E+ +Q + K K +K ++K+K K K++ +
Sbjct: 171 LSDSDQEAVLPLVKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSK--KAKTDRDVS 228
Query: 859 DSSKEKPEESNEKTKRHKIKSEPKE 883
S+ ++S++ K++++ KE
Sbjct: 229 TSTAASQKKSSDLES--KLEAQSKE 251
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 31.1 bits (71), Expect = 2.1
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 802 EEKEKVEMEK--EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQ 848
E+ E+ E EK E+ ++ L + + EQ K+ E +E +E+ +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 30.9 bits (70), Expect = 2.1
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 816 KILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRH 875
+LRERE KEE A ++ +V+ ++ + + E + +K + +K ++
Sbjct: 64 ALLRERE-LKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKS 122
Query: 876 KIKSEPKENDSSKG 889
D
Sbjct: 123 AKDPRGGTQDVVDK 136
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 31.2 bits (70), Expect = 2.1
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 757 AIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKK 816
+ EKV E+KK + P +TE + VK +E VV ++ K EE V K
Sbjct: 121 FVFEKVSTFIVEEKKPEEEAPAAETEKKPAVK-EKEIVVEEEKKEEEAVPVA-AAPSTKA 178
Query: 817 ILREREEEKEEQPATKKIKVEKP 839
+ EE + PA + +K
Sbjct: 179 PETKVEETPAKAPAAPAAEPQKA 201
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.7 bits (72), Expect = 2.3
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK 852
+ EEK++ E + +++ + E EE++E++ TKK+K E + E +K K
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVK----ETTTEWELLNKTK 91
Score = 31.7 bits (72), Expect = 2.4
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 830 ATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIK 878
K+++ E P+E E+ K+ K + E K D +E EE ++ K+ K K
Sbjct: 27 VEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTK 75
Score = 29.7 bits (67), Expect = 9.7
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 793 PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK 852
P+ L K EKE + E+E+ K+ E++EE+E+ ++ E+ E+ +K K K+K
Sbjct: 22 PIYLWVEKEVEKEVPDEEEEEEKE---EKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVK 78
Query: 853 SEPKE 857
E
Sbjct: 79 ETTTE 83
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 31.2 bits (71), Expect = 2.3
Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K+++ AK K KE AE +L+ K E + + K+++ E +K++
Sbjct: 141 KAQQAAKQRTPKHKKEAAESASS-SLSGSAKPERNVS-----QEEAKKRLQEWELKKLKQ 194
Query: 810 EKEKRKKILREREEEKEEQPATKKI 834
+++KR++ R++ ++++E+ K+
Sbjct: 195 QQQKREEERRKQRKKQQEEEERKQK 219
Score = 30.5 bits (69), Expect = 4.6
Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 730 KYQKIKLKTSRFETPYQRFLKS--KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENV 787
K QK+ + + E +R + AK E+ ++ A+Q K E
Sbjct: 103 KLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESAS 162
Query: 788 KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTK 847
++ S+E+ K +++ + KK+ +++++ +EE+ +K + ++ EE K K
Sbjct: 163 SSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEER---RKQRKKQQEEEERKQK 219
Query: 848 QHKIKSEPKENDSSKEKPEESN 869
+ + +N + KP N
Sbjct: 220 AEEAWQKWMKNVKQRPKPVPLN 241
Score = 29.3 bits (66), Expect = 9.4
Identities = 28/157 (17%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 742 ETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKS 801
+ Y+ +L +K+ Q+K+ K E++K + + + E L+Q +
Sbjct: 86 QEAYENWLSAKQ--AQRQKKLQKLLEEKQKQEREKEREEAE-------------LRQRLA 130
Query: 802 EEK-----EKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
+EK + + K++ ++E + + + S E+ K+ + E K
Sbjct: 131 KEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELK 190
Query: 857 ENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGG 893
+ ++K EE +R K + + +E + K K+
Sbjct: 191 KLKQQQQKREE-----ERRKQRKKQQEEEERKQKAEE 222
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 31.6 bits (71), Expect = 2.3
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 788 KITQEPVVLKQIKSEEKE---KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNE 844
+ E V ++ +++E + E+E E + E E ++ +K K + EE E
Sbjct: 482 DVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEE 541
Query: 845 K--------TKQHKIKSEPKENDSSKEKPEESNEKTKR 874
K KQ K+ + K +++ KE+ E+ +K K+
Sbjct: 542 KKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKK 579
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 32.0 bits (73), Expect = 2.4
Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Query: 753 EYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKE 812
E + ++E ++ ++ L +++ E ++ +E L++ ++ E
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS-RLE 301
Query: 813 KRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKT 872
++K+ILRER E Q + ++E+ E ++ + + E K + +E E
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
Query: 873 KRHKIKSEPKE 883
+ E +
Sbjct: 362 ELEAELEELES 372
Score = 31.6 bits (72), Expect = 3.0
Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDK--ENAEQKKIDALTPQVKTEPEENV 787
+ + + SR E Q + + E+++ E E K + EE
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA--------EELA 340
Query: 788 KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTK 847
++ ++ LK+ + ++E E E + L R EE EEQ T + KV + E +
Sbjct: 341 ELEEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLEL-----Q 394
Query: 848 QHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVD 899
+ +E + ++ E+ E+ E+ ++ + K ++ + + ++
Sbjct: 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
>gnl|CDD|152713 pfam12278, SDP_N, Sex determination protein N terminal. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 168 and 410 amino
acids in length. This family is the N terminal end of
the sex determination protein of many different animals.
It plays a role in the gender determination of around
20% of all animals.
Length = 168
Score = 30.8 bits (69), Expect = 2.4
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 796 LKQIKSEEKE-------KVEMEKEKRKKILREREEEKEEQPATKKIKVE-----KPEESN 843
KQ++SE+ E + E + +R++ ++E E+E + KK+ +E K E
Sbjct: 15 FKQLRSEDSESGLRSRTEDERLQHRREEWFIQQEREREHEKLKKKMILEYELRRKREIEK 74
Query: 844 EKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSS--KGKSGGTISTVDFS 901
+K+ + KS E+ S K++S +D+S +G G I+ +
Sbjct: 75 LLSKRSRTKSRSPESQDRNNASNTSKTLILFEKLES---SDDTSLFRGPEGTQINATELR 131
Query: 902 KVNYNKYMAKPGKS 915
K+ N + PGK
Sbjct: 132 KIKINIHRVLPGKP 145
>gnl|CDD|185654 PTZ00475, PTZ00475, RESA-like protein; Provisional.
Length = 282
Score = 31.1 bits (70), Expect = 2.5
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 5 NQEIPKSD----EANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYIS 60
N I K D EAN+ + + VL Q + I T +P +N+ I Y+S
Sbjct: 126 NSGINKKDIYLKEANERMIRNSIVLRQCKSRFISIIT---NYYPFKEQNNPFIKQAQYVS 182
Query: 61 GVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESI 109
D ++ +D NI +++ LY E ++L E +++LE I
Sbjct: 183 SSNYVLDDIINNID--YSIDNIHRAIDNLYYEHILNLLEEEKNEILEEI 229
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 30.0 bits (68), Expect = 2.6
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 798 QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE 857
Q +++EKE+ E E+RK+I ER++E E+Q +K ++ EE N+ E E
Sbjct: 39 QEEAKEKEREER-IEERKRIREERKQELEKQLKERKEALKLLEEEND-------DEEDAE 90
Query: 858 NDSSKEKPEESNEKTKRHK-IKSEPKENDSSKGKSGGTISTVDF 900
+ +++ ++ E E + D K K+ T+ +D
Sbjct: 91 TEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEELDP 134
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.3 bits (72), Expect = 2.6
Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 732 QKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAE-QKKIDALTPQVKTEPEENVKIT 790
++++ + + + +R L+ +E E ++K E +KK L + ++ ++
Sbjct: 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK-----QQELEKK 129
Query: 791 QEPVVLKQIKSEEKEKVE----MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKT 846
+E L+++ E+ +++E + E+ K+IL E+ EE+ A IK E EE+ E+
Sbjct: 130 EE--ELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIK-EIEEEAKEEA 186
Query: 847 KQ 848
+
Sbjct: 187 DK 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEE---KEEQPATKKIKVEKPEESNEKTKQ---HK 850
K+ E KE++ + + +K LRER E E++ K+ +++ E EK ++ K
Sbjct: 56 KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK 115
Query: 851 IKSEPKENDSSKEKPEESNEKTKRHK 876
K ++ ++K EE E +
Sbjct: 116 EKELEQKQQELEKKEEELEELIEEQL 141
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.6 bits (71), Expect = 2.6
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPATK 832
++E+K + E E+EK K+ RERE E+E + A K
Sbjct: 591 EAEQKAREEREREKEKEKEREREREREAERAAK 623
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 31.6 bits (72), Expect = 2.7
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 860 SSKEKPEESNE-KTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQK 918
SS+ P N KT R K K K + G KVN+ A G+ K
Sbjct: 726 SSERAPR--NVGKTAREKAKKGDAGKKGGKRRQVG-------KKVNFEPDSAFRGEKKAK 776
Query: 919 KKGKGGKQNKKKKNS 933
K K KK S
Sbjct: 777 PKAAKKDARKAKKPS 791
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 31.4 bits (71), Expect = 2.8
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
K+ E ++ + K+DA + +++ E E+ +K +E + + E +
Sbjct: 122 LEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQ 181
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
+ K+L EE EQ + ++ E+ +K + + SE + + K +
Sbjct: 182 NADTELKLLESELEELREQ---LEECQKELAEAEKKLQS--LTSEQASSADNSVKIKHLE 236
Query: 870 EKTKR 874
E+ KR
Sbjct: 237 EELKR 241
Score = 31.1 bits (70), Expect = 4.3
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 728 SNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAE-QKKIDALTPQVKTEPEEN 786
N +++ + +T + E + E+ KE AE +KK+ +LT + + + +
Sbjct: 170 KNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNS 229
Query: 787 VKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKT 846
VKI LK+ + + E+ K ++++L+ E E+E + E N K
Sbjct: 230 VKIKHLEEELKRYEQD----AEVVKSMKEQLLQIPELERE---------LAALREENRKL 276
Query: 847 KQHK-----IKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
+ K +K E ++ S E+ E+ EK +++ E EN+ KS
Sbjct: 277 RSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKS 326
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3. The
C.elegans Notch pathway, involved in the control of
growth, differentiation and patterning in animal
development, relies on either of the receptors GLP-1 or
LIN-12. Both these receptors promote signalling by the
recruitment of LAG-3 to target promoters, where it then
acts as a transcriptional activator. LAG-3 works as a
ternary complex together with the DNA binding protein,
LAG-1.
Length = 476
Score = 31.5 bits (70), Expect = 2.8
Identities = 13/108 (12%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 745 YQRFLKSKEYAKAIQEKVDK-ENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEE 803
Y FL + + E A ++ P P+ ++ Q+ ++ ++ +E
Sbjct: 280 YDTFLAELDAMEPEGETKKSPMEAGGDRMPQSAPPPAMNPQHIAQLAQQQNKMRLLQQQE 339
Query: 804 KEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKI 851
E +E++++++I+ + +++++++ +++ +++ ++ ++ + H++
Sbjct: 340 MEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQM 387
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 31.2 bits (70), Expect = 2.9
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 813 KRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKT 872
+R L EEE E++ + E+ +ES +T + + ++ + + E E+
Sbjct: 373 RRAASLSGEEEEPEDELK-DDVDGEQADESEHETLALRKNARQRKAGLASPEEEALGEEE 431
Query: 873 KRHKIKSEPKENDSSKGKSGGT 894
++ K + + + GT
Sbjct: 432 QKAPPKKKQLNQKNKQQTGSGT 453
>gnl|CDD|237377 PRK13405, bchH, magnesium chelatase subunit H; Provisional.
Length = 1209
Score = 31.6 bits (72), Expect = 3.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 334 KWLQKDFGLYVVGMFDTHQACKFLP 358
+WL++DFG V F TH A +F+P
Sbjct: 589 RWLREDFGADAVLHFGTHGALEFMP 613
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 31.2 bits (71), Expect = 3.1
Identities = 11/58 (18%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 768 EQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEK 825
E ++ + +P + + + P ++SEE+ + +++E+ ++ LRER+ ++
Sbjct: 97 ETQQEEKAVNPFTPQPGQ--REERRP----TLESEEEWRARLKREQEEQYLRERQRQR 148
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 31.4 bits (71), Expect = 3.2
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 820 EREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKS 879
E+ E K+E K K K E S + Q + K E + NE+ + +++
Sbjct: 118 EKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEYLEN 177
Query: 880 EPK 882
+
Sbjct: 178 FKR 180
>gnl|CDD|219627 pfam07897, DUF1675, Protein of unknown function (DUF1675). The
members of this family are sequences derived from
hypothetical plant proteins of unknown function. One
member of this family is annotated as a putative
RNA-binding protein, but no evidence was found to
support this.
Length = 283
Score = 30.7 bits (69), Expect = 3.5
Identities = 22/133 (16%), Positives = 38/133 (28%), Gaps = 8/133 (6%)
Query: 808 EMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEE 867
E E KRK++ R E + + + K+ + + ++ +SSK
Sbjct: 69 EEEWRKRKEMQSLRRLEAKRKRSEKEYNGVSNGDDMDSINAANGGGSGRDKESSKGVETG 128
Query: 868 SNEKTKRHKI---KSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGG 924
S T S E D + S VN + G
Sbjct: 129 SPIATSSSSGGPSSSGLSELDVGVIGGQSGQTKQVRSPVN-----NILTGTESTSHGTDP 183
Query: 925 KQNKKKKNSKRKP 937
+ K++ P
Sbjct: 184 VDAETNKSNTTSP 196
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 30.8 bits (69), Expect = 3.6
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 795 VLKQIKSEEKEKVEMEKEKRKKILREREEEK--EEQPATKKIKVEKPEESNEKTKQHKIK 852
V+ + K ++ K+++E E R+ E EEEK +E+ ++ ++K E ++K +
Sbjct: 340 VVLEEKGKDWRKIDLELEHRRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPESKGSGQE 399
Query: 853 SEPKENDSSKEKPEESNEKTKRH 875
K + E+ E+
Sbjct: 400 QSHKGLSELIRQKEKELERLTVE 422
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 30.4 bits (69), Expect = 3.6
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 760 EKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILR 819
+ + + E K + P+V + +E + + ++++E+E +E ++ I
Sbjct: 11 DALPFQVIEFKDLANAGPKV----APEKAVLEEEELEQALEAKEEELESAAQELQEGIEE 66
Query: 820 EREEEKEEQ 828
E EE
Sbjct: 67 GAREGYEEG 75
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 30.4 bits (69), Expect = 3.7
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 822 EEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESN 869
EEE P V + EP+ +E+PE+ +
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGP------EPEPEPEPEEEPEKKS 156
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 31.1 bits (70), Expect = 3.9
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 762 VDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRER 821
V KE A + A++P + E E + +P + K + R L +
Sbjct: 320 VAKEPAGES--PAVSPSFEREKSEKSRHESDPKSRENSKPASIYG-SVPDLIRHTPLEDV 376
Query: 822 EEEKEEQPA-TKKIKVEKPEESNEKTKQ---HKIKSEPKEND---SSKEKPEESNEKTKR 874
EE + P +I V+ P E + + + H+ SE D S ++ S
Sbjct: 377 EEYEPLFPEDESEIAVKPPTEESSRRPEEEKHRFPSEDVWEDSPSSLQDTATVSTPSNPP 436
Query: 875 HKIKSEPKENDSSK 888
+ P++ S
Sbjct: 437 PRASETPEQETSRS 450
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 30.4 bits (68), Expect = 3.9
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 784 EENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESN 843
E + E ++ + +V+ K K++++L + +E +E +K E+ EE
Sbjct: 169 PERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEE 228
Query: 844 E 844
Sbjct: 229 V 229
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 30.6 bits (70), Expect = 4.2
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 785 ENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQ-PATKKIKVEKPEESN 843
EN +E + + + + +K+ E+R+K+LRE EE + E+ +K+I
Sbjct: 9 ENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKR--G 66
Query: 844 EKTKQHKIKSEPKENDSSKEKPEESNEKTK 873
E + I + + KE +E
Sbjct: 67 EDDAEELIAEVKELKEKLKELEAALDELEA 96
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 31.0 bits (70), Expect = 4.2
Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 8/148 (5%)
Query: 732 QKIKLKTSRFETPYQRFLKSKEYA---KAIQEKVDKENAEQKKIDALTPQVKTEPEENVK 788
Q I+ + ++ E Q + I+ + + E Q++ + + EE
Sbjct: 298 QAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKA 357
Query: 789 ITQEPVVLKQIKSEEKEKVEMEKEKRKKILRER--EEEKEEQPATKKIKVEKPEESNEKT 846
I ++ + VE +E + E+ E +++++ E+ +
Sbjct: 358 AANIAEA---IGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAE 414
Query: 847 KQHKIKSEPKENDSSKEKPEESNEKTKR 874
+ + E ++ +EK + E +
Sbjct: 415 AEAQAAEIKAEAEAIREKGKAEAEAKRA 442
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 30.9 bits (70), Expect = 4.3
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 18/132 (13%)
Query: 832 KKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
K I + +E + + Q S S K + + K K+ S
Sbjct: 374 KGIYDQIEKEMDAFSIQAS--SAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTSTK 431
Query: 892 GGTISTVDFSKVNYNKYMAKPGKSNQKK------------KGKGGKQNKKKKNSKRKPFL 939
GGT ++ + + K GK NQKK K G K++ K +
Sbjct: 432 GGTAESIP----DDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQEDNNNIPP 487
Query: 940 FLWLSQNILQLF 951
W+ + IL+
Sbjct: 488 EEWVMKKILEWV 499
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.8 bits (70), Expect = 4.3
Identities = 21/89 (23%), Positives = 39/89 (43%)
Query: 766 NAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEK 825
+ KK+ L + + E E +K +E ++ K + E K++ E E EK
Sbjct: 173 DQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREK 232
Query: 826 EEQPATKKIKVEKPEESNEKTKQHKIKSE 854
EE + K+ + E + + K+K+E
Sbjct: 233 EELRKKYEEKLRQELERQAEAHEQKLKNE 261
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 30.7 bits (70), Expect = 4.4
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 869 NEKTKRHKIKS-EPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQN 927
E K I PK S+ K+G SK K K K +K K K ++
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKP------SKKVLAKRAEKKEKEKEKPKVKKRHRD 418
Query: 928 KKKKNSKRKP 937
K +RKP
Sbjct: 419 TKNIGKRRKP 428
Score = 30.3 bits (69), Expect = 6.5
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 772 IDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPAT 831
ID L P+ K E+ K++ ++ EK E EKEK K R R+ T
Sbjct: 373 IDELRPKTKAPSEKKTG-----KPSKKVLAKRAEKKEKEKEKPKVKKRHRD--------T 419
Query: 832 KKI-KVEKPEESNEK 845
K I K KP ++E+
Sbjct: 420 KNIGKRRKPSGTSEE 434
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 30.9 bits (70), Expect = 4.4
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 835 KVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHK-----IKSEPKE 883
K+E+ E N + + + S+P N ++ ++S+ K K + IK E +E
Sbjct: 842 KMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 30.3 bits (69), Expect = 4.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 797 KQIKSEEKEKVEMEKEKRKKILRE-REEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
KQ++ E K KV + +R + + RE E++ A ++ + KP+ +K K K EP
Sbjct: 101 KQLE-EAKAKV---QAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEP 156
Query: 856 KENDSSK 862
+ S
Sbjct: 157 QHTPVSD 163
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.9 bits (69), Expect = 4.5
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 7/141 (4%)
Query: 722 DKMKIGSNKYQKIKLKTSRFETPYQRFLK-----SKEYAKAIQEKVDKENAEQKKIDALT 776
+ K+ ++++++K K S RF K S E + + + +K N E + + +
Sbjct: 554 NHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENS 613
Query: 777 PQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKV 836
+ E +T E E E+ E ++K + LR E +E KK
Sbjct: 614 SDNEMEESRGSSVTAENEESADEVDYETEREENARKKEE--LRGNFELEERGDPEKKDVD 671
Query: 837 EKPEESNEKTKQHKIKSEPKE 857
EE + +Q KI E
Sbjct: 672 WYTEEKRKIEEQLKINRSEFE 692
>gnl|CDD|197400 cd10164, ClassIIa_HDAC5_Gln-rich-N, Glutamine-rich N-terminal
helical domain of HDAC5, a Class IIa histone
deacetylase. This family consists of the glutamine-rich
domain of histone deacetylase 5 (HDAC5). It belongs to a
superfamily that consists of the glutamine-rich
N-terminal helical extension to certain Class IIa
histone deacetylases (HDACs), including HDAC4, HDAC5 and
HDCA9; it is missing from HDAC7. This domain confers
responsiveness to calcium signals and mediates
interactions with transcription factors and cofactors,
and it is able to repress transcription independently of
the HDAC C-terminal, zinc-dependent catalytic domain. It
has many intra- and inter-helical interactions which are
possibly involved in reversible assembly and disassembly
of proteins. HDACs regulate diverse cellular processes
through enzymatic deacetylation of histone as well as
non-histone proteins, in particular deacetylating
N(6)-acetyl-lysine residues.
Length = 97
Score = 28.6 bits (63), Expect = 4.5
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 769 QKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQ 828
QK+ + LT Q + + ++++K+ E +Q + K + E E+++K ++R+EE E+Q
Sbjct: 32 QKQHEHLTRQHEVQLQKHLKVRAELFSEQQQQEILAAKRQQELEQQRKREQQRQEELEKQ 91
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 30.7 bits (69), Expect = 4.6
Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Query: 761 KVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE 820
K D AE + + + E + +E + + E + K E E E R+
Sbjct: 632 KGDVAEAEHTG-ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERK 690
Query: 821 REEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSE 880
E+E E + K+ + E+ E + + ++E E++ E EE E + ++E
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Query: 881 PKENDSSKG 889
K ++G
Sbjct: 751 GKHEVETEG 759
Score = 30.7 bits (69), Expect = 5.2
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
SEE+E+ E E+E+ ++ E EEE+EE+ + + +E PE
Sbjct: 863 SEEEEEEEEEEEEEEE--EEEEEEEEEEENEEPLSLEWPE 900
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 30.9 bits (69), Expect = 4.7
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
KE+A+A E+ +EN E+ + + V+ EENV+ E V + ++ +E VE
Sbjct: 940 KEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENV 999
Query: 812 EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEK 871
E+ + E EE E+ + ++ E EE+ E+ +++ + + + + +E EE+ E+
Sbjct: 1000 EEN---IEENVEENVEENIEENVE-EYDEENVEEVEENVEEYDEENVEEIEENAEENVEE 1055
Query: 872 TKRHKIKSEPKEN 884
I+ +EN
Sbjct: 1056 NIEENIEEYDEEN 1068
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 30.6 bits (69), Expect = 4.8
Identities = 33/156 (21%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 736 LKTSRFETPYQR---FLKSKEYAKAIQEKVDKE----NAEQKKIDA-LTPQVKTEPEENV 787
KT++ E+ + L++KE A+ +E++++E E K+I++ LT + + ++
Sbjct: 59 KKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDE 118
Query: 788 KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTK 847
++ + L E KE+ +K K + EREE+ E+ KK ++E+ ++
Sbjct: 119 NLSSKEKTL-----ESKEQSLTDKSKH---IDEREEQVEKLEEQKKAELERVAALSQAEA 170
Query: 848 QHKIKSEPKEN----------DSSKEKPEESNEKTK 873
+ I +E + ++ +E + S++ K
Sbjct: 171 REIILAETENKLTHEIATRIREAEREVKDRSDKMAK 206
Score = 30.2 bits (68), Expect = 6.2
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 766 NAEQKKIDALTPQVKTEPE-ENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEE 824
NAEQ +A+ + K E + E++K T + ++ K+ +KE + KE+ +K E E+E
Sbjct: 39 NAEQ---EAVNLRGKAERDAEHIKKTAK----RESKALKKELLLEAKEEARKYREEIEQE 91
Query: 825 -KEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIK 878
K E+ K+I+ E + ++ EN SSKEK ES E++ K K
Sbjct: 92 FKSERQELKQIESRLTERATSLDRK-------DENLSSKEKTLESKEQSLTDKSK 139
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 29.8 bits (67), Expect = 4.9
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 803 EKEKVEMEKEKRKKILREREEEKEEQPAT-KKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
E+ K M+K K E+EEEKE K + E+ E E K+ + +E+ +
Sbjct: 21 EEAKANMQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAE 80
Query: 862 KEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
+++ EE ++ ++ + + K+ + K
Sbjct: 81 QQEKEEIAQEEEKEEEAEDVKQQEVFSFKR 110
Score = 29.0 bits (65), Expect = 8.4
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 756 KAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIK-SEEKEKVEMEKEKR 814
KA +++ +KEN+++ Q E + + I +EKE++ E+EK
Sbjct: 35 KADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94
Query: 815 KKILREREEEKEEQPATKKIK 835
++ +++E K K
Sbjct: 95 EEAEDVKQQEVFSFKRKKPFK 115
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 30.7 bits (69), Expect = 4.9
Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 35/197 (17%)
Query: 768 EQKKIDALTPQVKTEPEEN--VKITQEPVVLKQIKSEEKEKVEMEKEKRKKIL----RER 821
+ ++ L+P +E + VKI + +L +I +K K K L ++
Sbjct: 681 RETEL--LSPLRDSEERYSLWVKIDLD--LLSRIPGHPYKKGVPPKPAEKDSLSAPKKQT 736
Query: 822 EEEKEEQPATKKIKVEKPEESNEKTKQHKIKSE----------------PKENDSSKEKP 865
+ E+ ++K + K +E +K + K + E N S++
Sbjct: 737 SKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSS 796
Query: 866 EESNEKTKRHKIKSEP-KENDSSKGKSGGTISTVDFSKVN------YNKYMAKPGKSNQK 918
E+ D S + K +K +++
Sbjct: 797 RNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKSSSKSSSTSKH 856
Query: 919 KK--GKGGKQNKKKKNS 933
+K GKG +K+ K S
Sbjct: 857 RKTEGKGSSTSKEHKGS 873
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase
(trigger factor) [Posttranslational modification,
protein turnover, chaperones].
Length = 441
Score = 30.3 bits (69), Expect = 5.0
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKIL 818
Q+ +D A + + L + K E E+ VK+ ++L++I EEK +V E+E + +I
Sbjct: 323 QQGIDSLEASGESEEELREEFKEEAEKRVKLG---LLLEEIAKEEKLEVT-EEEIKAEIE 378
Query: 819 REREEEKEEQPATKKIKVEKPEESN---------EKTKQHKIKSEPKENDSSKEKPEESN 869
+ EQP +E EK + ++ K + E N
Sbjct: 379 ELARQYGGEQPEEVIKLYYNNQELLDALKADILEEKAVDLLLANKKKVTEKEVSFEELMN 438
Query: 870 E 870
E
Sbjct: 439 E 439
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 30.5 bits (69), Expect = 5.1
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 805 EKVEM-EKEKRKKILREREEEKEEQP------ATKKIKVEKPEESNEKTKQHKIKSEPKE 857
E VE+ EKEK KK L ++++ + P + I + EE K K+
Sbjct: 169 ENVELVEKEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDS 228
Query: 858 NDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQ 917
S+ ++ E+ KR ++K + K N+ S D+ V+ KP K +
Sbjct: 229 GGSTDDEAEK-----KRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKK 283
Query: 918 KKK 920
KKK
Sbjct: 284 KKK 286
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 28.5 bits (64), Expect = 5.2
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 773 DALTPQVKTEPEENVKITQEPVVLKQIKSEEKE-KVEMEKEKRKKI--LREREEEKEE 827
A P+ K E K ++ + + IK+ EKE K E E E++++I ++ER KEE
Sbjct: 19 KAFRPKSKLTSWE--KRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEE 74
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 29.8 bits (67), Expect = 5.3
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKV-EKPEESNEKTKQHKIKSEPKEN 858
K +EK+E ++ L E +E+ EE P K E EE E+ +Q K ++ E
Sbjct: 2 KPYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTK-ENSLIEK 60
Query: 859 DSSKEKPEESNEKTKRHKIKS 879
S E+ EK K+K
Sbjct: 61 VDSIEEEISEKEKVMSEKLKE 81
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 30.4 bits (68), Expect = 5.6
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 793 PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHK 850
P +L+ I + + E+EK+ K L++ E + E+ + K EE E + K
Sbjct: 400 PSLLRFISTYSW--ADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDK 455
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 28.9 bits (65), Expect = 5.7
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 755 AKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQ--------IKSEEKEK 806
A+ +K +E+ D + +K EE + + +++ E+ K
Sbjct: 3 ARKEAQKALEEDPSIYDYDEVYDSIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRK 62
Query: 807 VEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPE 866
E E + +K+ +ERE+E +E EK S K + + + +E + +E+ E
Sbjct: 63 REREIAEERKLQKEREKEGDEFA-----DKEKFVTSAYKKQLEENRKL-EEEEKEREELE 116
Query: 867 ESNEKTKR 874
E N+ TK
Sbjct: 117 EENDVTKG 124
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 30.0 bits (68), Expect = 5.7
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 820 EREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKS 879
E+E ++EE+ KK K + E T K K + + K K K +I
Sbjct: 75 EKELQREERLKKKKRV--KTKAYKEPT---KKKKKKDPTAAKSPKAAAPRPKKKSERISW 129
Query: 880 EPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRKP 937
P DS + KS + S+ +K ++ + + ++K K K+K+ K K
Sbjct: 130 APTLLDSPRRKS--SRSSTVQNKEATHERLK---EREIRRKKIQAKARKRKEKKKEKE 182
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 30.2 bits (68), Expect = 5.9
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 811 KEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNE 870
+E R+KI ERE+EKEEQP K E+ + S+ EN +E P+ + E
Sbjct: 155 RELRQKIREEREKEKEEQPMKPAFKPERWMGGPD--------SDEDENPLDEEAPDMTPE 206
Query: 871 KTKRHK 876
+K+ +
Sbjct: 207 TSKQDQ 212
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 6.0
Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 763 DKENAEQKKIDALTPQVKTEPE-----ENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKI 817
++ +++++ V+ E E + +E + ++ EEK + E +R
Sbjct: 489 EEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
Query: 818 LREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKE 863
L EEK E A + E+ EE+ E+ ++ S+ E E
Sbjct: 549 LEAEAEEKREAAAEAE---EEAEEAREEVA--ELNSKLAELKERIE 589
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 30.3 bits (68), Expect = 6.2
Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 18/164 (10%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKI 789
+ ++++ K + E L E A ++ ++ +N ++ D + + E V
Sbjct: 885 RAEELREKRGKLEAHRAM-LSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVE 943
Query: 790 TQEPVVL------KQIKSEEKEKVEMEKEKRKKILREREEEKEEQPA-----------TK 832
+ E V +Q + +E E +K +R ++ A K
Sbjct: 944 SAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAK 1003
Query: 833 KIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHK 876
K +K K+ K P + + K +++ +K R
Sbjct: 1004 KAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKA 1047
>gnl|CDD|139556 PRK13414, PRK13414, flagellar biosynthesis protein FliZ;
Provisional.
Length = 209
Score = 29.8 bits (67), Expect = 6.2
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 794 VVLKQIKSEEK-EKVEMEKEKRK-------------KILREREEEKEEQPATKKIKVEKP 839
++LK+IKSEE+ E ++ K K KILR+ ++E+ + K+E
Sbjct: 135 ILLKEIKSEEELENLKFRLSKIKSSAKKDSFKSIFKKILRKNKKEEIPFDGNEYAKLEND 194
Query: 840 EESNEKTKQHKIK 852
E++ K+KQ ++K
Sbjct: 195 IETSLKSKQDRLK 207
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 29.6 bits (66), Expect = 7.1
Identities = 15/70 (21%), Positives = 36/70 (51%)
Query: 798 QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE 857
Q+ + K M K K K +E +E++E+ ++ ++ + S + Q + + +P++
Sbjct: 134 QLSDLNRLKPHMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
Query: 858 NDSSKEKPEE 867
+++K K E
Sbjct: 194 PNNNKRKAME 203
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 30.2 bits (68), Expect = 7.2
Identities = 30/136 (22%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEE-------KEEQPATKKIKVEKPEESNEKTKQH 849
+ K E+ ++ K KKI E + E EE TK K K KT+
Sbjct: 366 IKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNK-NKNSSFINKTENI 424
Query: 850 KIKSEPKENDSSK-------EKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSK 902
S K+ K E P+E + I S + ++ I T +F
Sbjct: 425 LTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEI---AQLDENQNLIDTGEFDL 481
Query: 903 VNYNKYMAKPGKSNQK 918
N P N+
Sbjct: 482 ENNFSNSFNPENGNKI 497
Score = 29.8 bits (67), Expect = 9.1
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 800 KSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQH--KIKSEPKE 857
SE +E+ E E + +K +E IK +K E N+ + K E E
Sbjct: 355 LSELEEEDENEIKFKK--------IEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFE 406
Query: 858 NDSSKEKPEESNEKTKRHKIKSEPKENDSSK 888
+K K KT+ S K+ K
Sbjct: 407 TKDNKNKNSSFINKTENILTNSPLKDELLEK 437
>gnl|CDD|224234 COG1315, COG1315, Uncharacterized conserved protein [Function
unknown].
Length = 543
Score = 30.1 bits (68), Expect = 7.3
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 4/126 (3%)
Query: 747 RFLKSKEYAKAIQEKVDKENAEQKKIDALTPQ-VKTEPEENVKITQEPVVLKQIKSEEKE 805
+ KE + I + +E ++ + VK E ++N+ + +L + K
Sbjct: 408 IVERLKELTEEI--SLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVN-NTKI 464
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
+ EK K L +EE E + V+ S K E + + E
Sbjct: 465 TLRNSIEKIKAELEGLQEELEVVGIEGSVSVKNQVYSGVKIYFGDAYQETIKEHGNVEFY 524
Query: 866 EESNEK 871
E
Sbjct: 525 LRDGEI 530
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear precisely
where AhaH fits into these complexes.
Length = 85
Score = 27.9 bits (62), Expect = 7.3
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 796 LKQIKSEE---KEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK 852
L++IK E +E +E +E+RK+ + E EE E +E+ EE K + IK
Sbjct: 1 LEEIKKAEEDAEELIEEAEEERKQRIAEAREEAREL-------LEEAEEEASKLGEEIIK 53
Query: 853 SEPKENDSSKEKPEESNEKTKRHKIKSEPKEN 884
+E + EK E EK + +KS+ KE
Sbjct: 54 EAEEEIEKEAEKIREEGEK-EIEAMKSKAKEK 84
>gnl|CDD|220184 pfam09332, Mcm10, Mcm10 replication factor. Mcm10 is a eukaryotic
DNA replication factor that regulates the stability and
chromatin association of DNA polymerase alpha.
Length = 346
Score = 29.9 bits (67), Expect = 7.6
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 734 IKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEP 793
+KLK P K E K + E E+ A + + E +K
Sbjct: 144 LKLKALEKANPNSIKRKRSESGK---RRAIDERVEKNASSAKRQKSPEDEEPAMKKR--- 197
Query: 794 VVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK 852
+ ++SEE +K+ K +L E E E +E+ K E+ EE ++ K K
Sbjct: 198 ---RYLESEEFQKILAAKSSHTGLLEEAEREAQEEYFNPLEKKEQMEEKMLTIREMKCK 253
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 28.7 bits (65), Expect = 7.7
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 761 KVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVL---KQIKSEEKEKVEM-------- 809
K++ ENA Q++ + L ++K +EN++ QE L Q EE EK+E
Sbjct: 6 KLEAENA-QERAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKEAKEK 64
Query: 810 --EKEKRK---KILRER----EEEKEEQPATKKIKVEKPEESNEKTKQ--HKIKSEPKEN 858
E EK + L R EEE EE K EK E+++K ++ K+K+ E
Sbjct: 65 LEESEKLATNAEALTRRIQLLEEELEESEKRLKETTEKLREADKKAEESERKVKALENER 124
Query: 859 DSSKEKPEESNEKTK 873
D +EK EE +K K
Sbjct: 125 DEWEEKYEELEKKYK 139
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 29.7 bits (67), Expect = 7.7
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 747 RFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEK 806
R KS +K +E E E++ + P + P+ ++I + +E+
Sbjct: 19 REKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVP----ASVKLPL-YEEIMEQNEER 73
Query: 807 VEMEKEKRKKILRERE-----EEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
E +EK K IL + E+EEQ K I K S + + K K++P
Sbjct: 74 REEVREKSKAILLSSQKPFSFYEREEQK--KAILPRKLRSSTSEREPKKFKAKP 125
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 30.1 bits (68), Expect = 7.7
Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 28/227 (12%)
Query: 711 KKIAQIGLFFEDKMKIGSN-----KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKE 765
+ I ++ + I + K ++ + R E + E +A ++ V
Sbjct: 103 ETWESILNKVKEYLDIENVEPFLLKSDALERISDRIED-GNEDREEAEELEAARKNVRDF 161
Query: 766 NAEQKKIDALTPQVKTEPEENVKITQE---PVVLKQIKSEEKEK--VEMEKEKR------ 814
A + N K E +LK+ +K KE R
Sbjct: 162 APVPWIPPAPKIYIYIVSIFNEKELSEKYKEFLLKKRNGLLLDKLGGRARKEYRSVCGLL 221
Query: 815 KKILREREEEKEEQPATKKIKVEKPE---ESNEKTKQ--------HKIKSEPKENDSSKE 863
+ +E ++ K E + E+ E+ + E
Sbjct: 222 AAAWKLEKETEQYSLFAKDDLEEDLKLLLEAGERLCPLCLIKRLLPERLKEKLVLIDEVI 281
Query: 864 KPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMA 910
K + N + R K ++ +E K + +K N Y A
Sbjct: 282 KRSKRNREEPRLKYENFREELRELLEKEPEIVYLFIKAKKNPGPYYA 328
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 29.4 bits (66), Expect = 7.8
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 799 IKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN 858
K + + + K+ + ++ E + E A KK + E + E +E
Sbjct: 117 KKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA--EEEEAEEA 174
Query: 859 DSSKEKPEESNE 870
+ + EES E
Sbjct: 175 PAEEAPAEESAE 186
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.1 bits (68), Expect = 8.0
Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 796 LKQIKSEEKEKVEMEKEK-RKKILR--------EREEEKEEQPA----TKKIKVEKPEES 842
+KQ+ SE ++K+E E +K K+ + E+ E+ Q +E+ +S
Sbjct: 280 IKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKS 339
Query: 843 NEKTKQHKIKSEPKENDSSKEKPEESNEKTKRH-KIKSEPKENDSSKGKSGGTISTVDFS 901
+ + E D SK E + K++ K+K D + I+ +
Sbjct: 340 VRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAY--YE 397
Query: 902 KVNYNKYMAKPGKS--NQKKKGKGGKQNKKKKNSKRKPFLF 940
A+ K+ +++ K KK ++K F
Sbjct: 398 SAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWF 438
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 30.2 bits (68), Expect = 8.1
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKIL 818
EKV + A++ K++ E E+ K T + + LK + + EKE +++KE
Sbjct: 1125 LEKVQELCADRDKLNI-------EVEDLKKTTPKSLWLKDLDALEKELDKLDKED----A 1173
Query: 819 REREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIK 878
+ E ++ Q A + + ++ ++Q K PK+ + E + E ++
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKK---VSRQAPKKPAPKKTTKKASESETTEETYGSSAME 1230
Query: 879 SE 880
+E
Sbjct: 1231 TE 1232
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 29.4 bits (66), Expect = 8.1
Identities = 17/120 (14%), Positives = 45/120 (37%), Gaps = 13/120 (10%)
Query: 757 AIQEKVDKENAEQKKIDALTPQ-VKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRK 815
A + ++ EQ+++ K +P + + ++ + +Q +++ +
Sbjct: 84 AAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQ----------- 132
Query: 816 KILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRH 875
+ + + QP K + EKP+ ++ PK + KP+ + R+
Sbjct: 133 -KAQSQATTVQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAEDAAETRY 191
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.5 bits (67), Expect = 8.6
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 775 LTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKI-LREREEEKEEQPATKK 833
L+P+V V T+E K +K+ E+E+ E +EK+++ ERE + + ++
Sbjct: 253 LSPEVL----RKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ 308
Query: 834 IKVEKPE 840
K+E+ E
Sbjct: 309 RKLEEKE 315
Score = 29.5 bits (67), Expect = 8.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 798 QIKSEEKEKVEMEKEKR-KKILREREEEKEEQPATKKIKVEKPEESNEKTK 847
++ E KV+ +E+ +KIL+ EEE++E+ KK + +K E + K
Sbjct: 252 KLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.8 bits (67), Expect = 8.7
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQ-------HKIKS 853
EE VE E + +K+ ER +E A + E EKT + H + +
Sbjct: 423 PEELYWVEEEHQIYRKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKMFLLSQKHIVYT 482
Query: 854 EPKE 857
EP E
Sbjct: 483 EPLE 486
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 29.3 bits (66), Expect = 9.0
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 745 YQRFLKSKEYAK--AIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSE 802
YQ L K Y K Q + ++E + ++ L +E ++ E +L+ +
Sbjct: 111 YQDELARKRYQKELEQQRRQNEELLKMQEESVLR-------QEAMRRATEEEILEMRRET 163
Query: 803 EKEKVEMEKE-KRKKILRERE----EEKEEQPATKKIKVEKPEESNEK 845
+E+ E+E+E R KI E EE+E + +++ K E E
Sbjct: 164 IEEEAELERENIRAKIEAEARGRAKEERENEDINREMLKLKANEERET 211
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 29.5 bits (66), Expect = 9.1
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 828 QPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSS 887
KK +S K K KS ++K+ ++ KT K+ ++
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKS------AAKKVSKKKAAKTAVSAKKAAKTAAKAA 249
Query: 888 KGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRKP 937
K + + K K K+ K K K K +K+K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKA 299
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 30.0 bits (67), Expect = 9.1
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 16/140 (11%)
Query: 798 QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE 857
Q E K+ ++ K+K I E ++ +E P + P+ +K + + KE
Sbjct: 480 QFTQEIKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKE 539
Query: 858 NDSSKE--KPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKS 915
+D KE KP E+ E K KE+ SK I T +K P
Sbjct: 540 SDEPKEGGKPGETKEGEVGKK-PGPAKEHKPSK------IPT-------LSKKPEFPKDP 585
Query: 916 NQKKKGKGGKQNKKKKNSKR 935
K + K+ K+ ++++R
Sbjct: 586 KHPKDPEEPKKPKRPRSAQR 605
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.0 bits (65), Expect = 9.1
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 770 KKIDALTPQVKTEPEENVKITQE--PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEE 827
K ++ + V++ E K+ + P + +I S ++ K + RK ++ ++K++
Sbjct: 15 KTLEEIRAHVRSTTESVDKVRDDIFPEDI-EIPSPKQPKKKRPTTPRKPATTKKSKKKDK 73
Query: 828 QPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDS 886
+ T++ K KPE ++KT++ +N+ +ES I +E +DS
Sbjct: 74 EKLTEEEK--KPESDDDKTEE---NENDPDNNEESGDSQESASANSLSDIDNEDDMDDS 127
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 28.2 bits (63), Expect = 9.2
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 780 KTEPEENVKITQE----PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIK 835
K EE+ ++E + K + E++E+ E+ KEKR+ R ++ E + +K++
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 836 VEKPEESNEKTKQHKIKS 853
EK +E+ +
Sbjct: 82 DEKLQETWHEHNLALANF 99
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 28.6 bits (64), Expect = 9.8
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 791 QEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHK 850
+E ++ S+E E+ E K K++K ++E++ E+ A KK + + TK+
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEK-KEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 851 IKSEPKE 857
K E +
Sbjct: 152 TKKEEGK 158
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 29.0 bits (65), Expect = 9.9
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 728 SNKYQK-IKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEEN 786
S+KYQK K+ S E P+ L KE + ++K+ ++ + +V EE
Sbjct: 89 SDKYQKKRKIGPSIKEHPFDLELFPKELYSVM--GINKKAGKKLALSKFKRKVGLFTEEE 146
Query: 787 VKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQP 829
I ++ +L++ + KE + ++ + E EEE+EE+
Sbjct: 147 EDIDEKLSMLEK---KLKELEAEDVDEEDEKDEEEEEEEEEED 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 49,839,404
Number of extensions: 4880874
Number of successful extensions: 8102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6312
Number of HSP's successfully gapped: 737
Length of query: 1006
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 900
Effective length of database: 6,236,078
Effective search space: 5612470200
Effective search space used: 5612470200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (28.3 bits)