RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7894
(1006 letters)
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase;
2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Length = 428
Score = 428 bits (1101), Expect = e-141
Identities = 191/406 (47%), Positives = 264/406 (65%), Gaps = 31/406 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL---------------------- 206
I RPQL+F+ K+DNS F PK+ KPNA KPL L
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 207 -------EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 259
+ + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
+L +L QE A++LE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
+QL DWR RPLPE + YAR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 440 LKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L
Sbjct: 301 KKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMML 360
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 361 KIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKS 406
Score = 99.6 bits (248), Expect = 4e-22
Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 325 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 384
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
++ + ++H +I +AR PL K
Sbjct: 385 RQQINEMHLLIQQAREMPLLKS 406
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance,
RNA processing, hydrolase, gene regulation; 2.10A
{Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB:
2hbk_A 2hbl_A* 2hbm_A*
Length = 410
Score = 426 bits (1098), Expect = e-141
Identities = 161/400 (40%), Positives = 233/400 (58%), Gaps = 24/400 (6%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 3 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 62
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 63 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 122
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 123 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 182
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 183 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 242
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN--------------EE 450
LL +YD ++ L K VL SRN+ K ++E + E
Sbjct: 243 LLNIYDQLRNKL--IESNKLAGVLY---ESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 297
Query: 451 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 510
+ + + + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G
Sbjct: 298 PWKILMYQYN-IPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIG 356
Query: 511 IFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 550
+ + N V + V+++ + +I A E
Sbjct: 357 VVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPI 396
Score = 102 bits (255), Expect = 4e-23
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 563 VSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 622
+ ++ +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+ +
Sbjct: 302 LMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLT 361
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQP 657
N V + V+++ + +I A E
Sbjct: 362 NGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPI 396
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Length = 375
Score = 289 bits (741), Expect = 3e-89
Identities = 75/365 (20%), Positives = 137/365 (37%), Gaps = 26/365 (7%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 369
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + + ++ A+ G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS--GWLPAALD 181
Query: 430 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 489
R + + E V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 182 EC---RLMQMRRQE-VVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 490 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQ 549
+V+ L +A+ +P + ++ H + A++ KA+
Sbjct: 237 FVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQ------------ 283
Query: 550 PSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 609
+ + Q + A + + ++ S + + Q+
Sbjct: 284 ----TLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLN 339
Query: 610 SIPRD 614
+
Sbjct: 340 WHWKL 344
Score = 81.7 bits (202), Expect = 1e-16
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 563 VSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACC 622
++ +Q L+ L WR R AR++D + +V+ L +A+ +P +
Sbjct: 203 ITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE-LDSL 261
Query: 623 NPVPQTVKEHVLDIHAIILKARLQPLTKPVEKLQPSLDGMKKKK 666
++ H + A++ KA+ P + + +D +K
Sbjct: 262 GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRK 305
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 286 bits (734), Expect = 2e-87
Identities = 68/363 (18%), Positives = 128/363 (35%), Gaps = 21/363 (5%)
Query: 236 EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQIST 294
+EPK + +I SEL +A D E + Y L+Q
Sbjct: 5 DEPKLLAEPREGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKR 64
Query: 295 RDKD-YIVDTLKLRE---DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
++D L D N + D V + H + D+ + G+ +FDT
Sbjct: 65 DGAGIGLLDPQALAAAGADWNDFNRAVGD--AVWILHDSLQDLPGFD-ELGMEPQRLFDT 121
Query: 351 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 410
A + L + R LA + +H+ + K DW +RPLP YA D L+ +
Sbjct: 122 EIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELET 181
Query: 411 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYA 469
M+ +L GK K + +M++ + + Q
Sbjct: 182 KMRAELKRQ--GKMEWAQE---EFDYALKEGLGPRKEHLIPWMHVSHITEVMRDRQALAI 236
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 529
+R L+ RD +AR+ D + +L + ++++A+ P + F + + V+ H
Sbjct: 237 VRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQ-FRSIRSINERVRIHTDSE 295
Query: 530 HAIILKARLQSLTKPVEKLQPSL--DGMKKKQQQ----QVSPPHDSNNQQKYALRELYKW 583
+ + K + ++ D + + +Q A + + W
Sbjct: 296 QDKMFERYAPIQRKIKPSMWKNIIQDALALPPSEWPDVDGGAARRHESQSASAPKSIRVW 355
Query: 584 RDR 586
++R
Sbjct: 356 KER 358
Score = 79.6 bits (196), Expect = 1e-15
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 15/140 (10%)
Query: 524 EHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDS------------NN 571
E ++++ ++A L+ K +E Q D K+ +
Sbjct: 174 ELLIELETK-MRAELKRQGK-MEWAQEEFDYALKEGLGPRKEHLIPWMHVSHITEVMRDR 231
Query: 572 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 631
Q +R L+ RD +AR+ D + +L + ++++A+ P + F + + V+
Sbjct: 232 QALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQ-FRSIRSINERVRI 290
Query: 632 HVLDIHAIILKARLQPLTKP 651
H + + K
Sbjct: 291 HTDSEQDKMFERYAPIQRKI 310
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form,
hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A
2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Length = 208
Score = 131 bits (330), Expect = 1e-34
Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 11/173 (6%)
Query: 252 ITEPEQVT----QLVSELKQQQEIAIDLEYH--NYRSYQGYTCLMQISTRDKD-YIVDTL 304
E + + L + D+E+ + ++Q+ + Y+
Sbjct: 20 SYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHIS 79
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK--FLPMPRQ 362
+ + L +L +K+I K G + D L +DF + + +
Sbjct: 80 SMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETW 139
Query: 363 SLAYLLKHYCDV--DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413
SL L+KH DK+ + +W + PL E YA TD + L +Y +
Sbjct: 140 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLG 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.8 bits (178), Expect = 5e-13
Identities = 91/561 (16%), Positives = 164/561 (29%), Gaps = 183/561 (32%)
Query: 198 ALKPLAILLEKYDAIE-SFCHPYEYELDLYVP----KEDFLKC-EEPKQALPLSDTP--- 248
+ +PL + + ++E P + +E F K EP + D P
Sbjct: 5 STRPLTL---SHGSLEHVLLVPT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 249 -------LMMIT---EPEQVTQ------------------------LVSELKQQQEIAID 274
L ++ EP +V Q L ++L Q+ + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 275 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK-NIVKVFHGADSDI 333
++Y T + L V +V +F G +
Sbjct: 118 KTKELIKNY--ITARIMAKRPFDKKSNSAL--------FRAVGEGNAQLVAIFGGQGNTD 167
Query: 334 KW---LQKDFGLYVVGMFDTHQAC--KFLPMPRQSLAYLLKHYCDVDS--DKTFQLFDWR 386
+ L+ LY T+ + ++L+ L++ D + + + +W
Sbjct: 168 DYFEELRD---LY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 387 HRPLPEPAIQYARTDTHYLL----------------YVYDCMKLDLS----------AAA 420
P P D YLL YV L + A
Sbjct: 220 ENPSNTP-------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 421 HGKQNLVLST-----------FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA 469
H Q LV + F + R + +F ++ R + Y
Sbjct: 273 HS-QGLVTAVAIAETDSWESFFVSVRKAITV-----LF----FIG-VRC------YEAYP 315
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHML----LQMAQSIPRDIQGIFACCNPVPQTVKEH 525
L I D E+ +P+ ML L Q + + +P +
Sbjct: 316 NTSL---PPSILEDSLEN-NEGVPSPMLSISNLTQEQVQDY----VNKTNSHLPAG--KQ 365
Query: 526 VLDIHAIILK--ARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALREL-YK 582
V I L A+ ++ P + SL G+ ++ +P ++ ++ R+L +
Sbjct: 366 V----EISLVNGAKNLVVSGPPQ----SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 583 WR-DRIARDKDESTGYVLPNH-MLLQMAQS-IPRDIQGIFACCN------PVPQTVKEHV 633
R +A P H LL A I +D+ N PV T
Sbjct: 418 NRFLPVA----------SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 634 LDIHAIILKARL--QPLTKPV 652
L + + + R+ + PV
Sbjct: 468 LRVLSGSISERIVDCIIRLPV 488
Score = 56.6 bits (136), Expect = 4e-08
Identities = 80/518 (15%), Positives = 152/518 (29%), Gaps = 185/518 (35%)
Query: 7 EIPKSDEANKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVA--- 63
++ + ++ L KT +++ +N + + F ++L A G A
Sbjct: 107 KLLQEND--TTLVKTKELI-KNYITA---RIMAKRPFDKKSNSALFRAVG---EGNAQLV 157
Query: 64 ------GTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTR----- 112
G +D + L + D++ + + L E I T
Sbjct: 158 AIFGGQGNTD---DYFEELRDLYQTYHVLVG-------DLIKFSAETLSELIRTTLDAEK 207
Query: 113 -----IDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAV 167
++++ + PS P + ++L ++
Sbjct: 208 VFTQGLNILEWLENPSNTPDKD------------------------------YLL---SI 234
Query: 168 EIERP-----QL-QFKV---KVDNSYEQLFEPKLKEKPNALKPL--AILLEKYDAIESFC 216
I P QL + V + + +L LK + L A+ + + D+ ESF
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELR-SYLKGATGHSQGLVTAVAIAETDSWESF- 292
Query: 217 HPYEYELDLYVPKEDF---LKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 273
+ F ++C +A P + P ++ + +
Sbjct: 293 ----FVSVRKAITVLFFIGVRC---YEAYPNTSLPPSILEDSLENN-------------- 331
Query: 274 DLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVL-TDKNI-VKVFHGADS 331
+G M +S + + ++++ + N L K + + + +GA +
Sbjct: 332 ----------EGVPSPM-LSISN----LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 332 DIKWLQKDFGLYVV-GMFDTHQACKFLPMPRQSLA----YLLKHYCDVDSDKTFQLFDWR 386
VV G P QSL L K D++ F R
Sbjct: 377 -----------LVVSG-------------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 387 -----HRPLP--EPAIQYARTDTHYLLYVYDCMKLDLSAAA---HGKQNL---VLSTFTN 433
+R LP P + +H L+ D + DL + K + V TF
Sbjct: 413 KLKFSNRFLPVASP---F---HSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYDTFDG 465
Query: 434 S----------RNICKLKYEKPVFNEEGYMNIFRSHAL 461
S I PV E +H L
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPV-KWETTTQFKATHIL 502
Score = 47.4 bits (112), Expect = 3e-05
Identities = 62/406 (15%), Positives = 127/406 (31%), Gaps = 156/406 (38%)
Query: 1 MSDTNQEIPKSD-EANKELSKTFDVL--VQNAYKSIVKCTKTAQSFPSTHENSLLIASP- 56
++T E+ ++ +A K ++ ++L ++N + P L++ P
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENP-----------SNTPDK---DYLLSIPI 236
Query: 57 -----------NYI--------------SGVAGTSDKVMTLVDSLLKTQNISKSMS-KLY 90
+Y+ S + G + LV ++ I+++ S + +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA----IAETDSWESF 292
Query: 91 LEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVH 150
+ +T +L I R + P I+++S +
Sbjct: 293 FVSVRKAIT-----VLFFIGVR-----CYEAYPNTSLPPSILEDSLE------------N 330
Query: 151 DNKKKSANWFMLNKGAVE-IERPQLQFKVKVDNSYEQLFEPK-----LKEKPN------- 197
+ S ML ++ + + Q+Q V NS+ L K L
Sbjct: 331 NEGVPSP---ML---SISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAKNLVVSGP 382
Query: 198 --ALKPLAILLEKYDAIESFCHPYEYELDLY-VPKEDFLKCEEPK---QALPLSD---TP 248
+L L + L K A LD +P F + + K + LP++ +
Sbjct: 383 PQSLYGLNLTLRKAKA--------PSGLDQSRIP---FSE-RKLKFSNRFLPVASPFHSH 430
Query: 249 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQI---STRD-KDYIVDTL 304
L+ + L+++ + ++ + + +QI T D D
Sbjct: 431 LL-----VPASDLINKDLVKNNVSFNAKD------------IQIPVYDTFDGSD------ 467
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKW--LQK-------DFG 341
LR ++E + D I W + DFG
Sbjct: 468 -LRVLSGSISERIVDCIIRLPVK-------WETTTQFKATHILDFG 505
Score = 44.7 bits (105), Expect = 2e-04
Identities = 52/298 (17%), Positives = 89/298 (29%), Gaps = 117/298 (39%)
Query: 127 SQPK-IVKESWNKNAKASNVWQE----------------VHDNKKKSANWFMLNKG-AVE 168
SQ + + + + + A +VW V +N F KG +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 169 IERPQLQFKVKVDNS--YEQLFE-------------PK--LKEKPNALKPLAILL-EK-- 208
+ F+ VD E++F+ K L +P A+ L EK
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QP-ALTLMEKAA 1743
Query: 209 YDAIES---------FC-HPY-EYE--------LDLYVPKEDFLK----------CEEPK 239
++ ++S F H EY + + E ++ P+
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI----ESLVEVVFYRGMTMQVAVPR 1799
Query: 240 QALPLSDTPLMMITEP---------EQVTQLVSELKQQQ----EIAIDLEYHNYRSYQGY 286
L S+ M+ P E + +V + ++ EI NY +
Sbjct: 1800 DELGRSN-YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV------NYNV-EN- 1850
Query: 287 TCLMQISTRDKDYIV--DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGL 342
Q Y+ D L+ + VL + K+ DI LQK L
Sbjct: 1851 ---QQ-------YVAAGDL----RALDTVTNVLNFIKLQKI------DIIELQKSLSL 1888
Score = 40.4 bits (94), Expect = 0.004
Identities = 43/330 (13%), Positives = 93/330 (28%), Gaps = 126/330 (38%)
Query: 578 RELYKWRDRIAR---DK-DESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 633
+LYK + A+ ++ D H SI + NPV T+ H
Sbjct: 1633 MDLYK-TSKAAQDVWNRADN--------HFKDTYGFSILDIVIN-----NPVNLTI--HF 1676
Query: 634 LDIHAIILKARLQPLTKPVEKLQPSLDG-MKKKKQQQQVSPPHDSMDCLNYKGLPPVFPN 692
++ + + +DG +K +K ++++ S ++
Sbjct: 1677 GGEKGKRIRENYSAMI-----FETIVDGKLKTEKIFKEINEHSTS---YTFRS-----EK 1723
Query: 693 NIICAPSNTH----LSSY-----------DPQDKKIAQIG---------------LFFED 722
++ A T L P D A G + E
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA--GHSLGEYAALASLADVMSIES 1781
Query: 723 KMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKV--DKENAEQKKIDALTPQ-- 778
+++ + R +Q V D+ + A+ P
Sbjct: 1782 LVEV---------VF--------YR-------GMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 779 VKTEPEENVKITQEPVVLKQIKSEEKEKVEM--------------EK---EKRKKILRER 821
+ +E ++ V++++ VE+ + + +L
Sbjct: 1818 AASFSQEALQ-----YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL--- 1869
Query: 822 EEEKEEQPATKKIKVEKPEES--NEKTKQH 849
K +KI + + ++S E+ + H
Sbjct: 1870 NFIK-----LQKIDIIELQKSLSLEEVEGH 1894
Score = 36.6 bits (84), Expect = 0.059
Identities = 53/337 (15%), Positives = 94/337 (27%), Gaps = 146/337 (43%)
Query: 412 MKLDL---SAAA---------HGKQNLVLSTFTNSRNICKLKYEKPV-----FN------ 448
M +DL S AA H K S I + PV F
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFS-------ILDIVINNPVNLTIHFGGEKGKR 1683
Query: 449 -EEGYMN-IFRSHALLNNQQKYALREL------YKWRDRIARDKDE--STGYVLPNHMLL 498
E Y IF + + + +E+ Y +R +K +T + P L+
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS----EKGLLSATQFTQPALTLM 1739
Query: 499 QMAQ--------SIPRDIQGIFA----------CCN----PVPQTVKEHVLDIHAIILKA 536
+ A IP D FA + V+ ++
Sbjct: 1740 EKAAFEDLKSKGLIPAD--ATFAGHSLGEYAALASLADVMSIESLVE---------VVFY 1788
Query: 537 RLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTG 596
R GM QV+ P D + Y + IA
Sbjct: 1789 R----------------GMT----MQVAVPRDELGRSNYGM---------IA-------- 1811
Query: 597 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHA---------II---LKAR 644
+ P ++A S ++ + V + +++I + L+A
Sbjct: 1812 -INPG----RVAASFSQE--ALQYVVERVGKRTGW-LVEI-VNYNVENQQYVAAGDLRA- 1861
Query: 645 LQPLTKPVEKLQPSLDGMKKKK---QQQQVSPPHDSM 678
++ + L+ +K +K + Q S + +
Sbjct: 1862 -------LDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 33.5 bits (76), Expect = 0.46
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 917 QKKKGKGGKQNKKKKNSKRKP-----FL-----F----LWLSQNILQLFIWELPILVKGK 962
+K K G + S+RK FL F L + +++ + + + K
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 963 YFQ--VVNIESAHNL 975
Q V + +L
Sbjct: 454 DIQIPVYDTFDGSDL 468
Score = 32.3 bits (73), Expect = 1.1
Identities = 71/476 (14%), Positives = 118/476 (24%), Gaps = 183/476 (38%)
Query: 509 QGIFACCNPVPQTVKEHVLDIHAIILKAR-LQSLTKPVEKLQPSLDGMKKKQQQQVSPPH 567
G VP A L+ + + L +P E + +P
Sbjct: 13 HGSLEHVLLVP-----TASFFIASQLQEQFNKILPEPTEGFA--------ADDEPTTPA- 58
Query: 568 DSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQ 627
EL + GYV + + G F + V
Sbjct: 59 -----------ELV------GK----FLGYV---------SSLVEPSKVGQF---DQVLN 85
Query: 628 TVKEH----VL---DIHAII---------------------LKARLQPLTKPVEKLQPS- 658
L DIHA+ + AR+ +P +K S
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDKKSNSA 144
Query: 659 -LDGMKKKKQQ-------QQVSPPHDSMDCLN-----YKGLPPVFPNNIICAPSNT--HL 703
+ + Q Q ++ D Y+ V ++I + T L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQG-----NTDDYFEELRDLYQ-TYHVLVGDLIKFSAETLSEL 198
Query: 704 SSYDPQDKKIAQIGL----FFEDKMKIGSNKYQKIKLKTSRFETP---------YQRFLK 750
+K+ GL + E+ Y L + P Y K
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCPLIGVIQLAHYVVTAK 254
Query: 751 SKEY---------------------AKAIQEKVDKENAEQKKIDALT------------- 776
+ A AI E E+ A+T
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 777 PQVKTEPEENVKITQEPVVLKQIKSEEKEKVE--M---EKEKRKKILREREEEKEEQPAT 831
P P I ++ + E E V M ++++ + PA
Sbjct: 315 PNTSLPPS----ILEDSL-------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 832 KKIK-----------VEKPEES--NEKTKQHKIKSEPKENDS----SKEKPEESNE 870
K+++ V P +S K K+ + S S+ K + SN
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 6e-13
Identities = 104/699 (14%), Positives = 204/699 (29%), Gaps = 210/699 (30%)
Query: 95 KDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHD-NK 153
KDIL+ D +++ + + DV K S+L + ++ +
Sbjct: 19 KDILSVFEDAFVDNFDCK-DVQDMPK--SIL------------SKEEIDHIIMSKDAVSG 63
Query: 154 KKSANWFMLNKGAVEIERPQLQFKVKVDN-SYEQLFEPKLKEKPNALKPLAILLEKYDAI 212
W +L+K +++ F +V +Y+ L P +K + P +
Sbjct: 64 TLRLFWTLLSKQEEMVQK----FVEEVLRINYKFLMSP-IKTEQRQ--PSMMTRM----- 111
Query: 213 ESFCHPYEYELD-LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQL---VSELKQQ 268
Y + D LY + F K ++ + +L + EL+
Sbjct: 112 ------YIEQRDRLYNDNQVFAK---------------YNVSRLQPYLKLRQALLELRPA 150
Query: 269 QEIAIDLEYHNYRSY----QGYTCLMQISTRDKDYIVDTLKLREDLEV--LNEVLTDKNI 322
+ + I G T + ++ + D ++ LN
Sbjct: 151 KNVLI---------DGVLGSGKTWVALDVCLSYK-----VQCKMDFKIFWLN-------- 188
Query: 323 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQS-------LAYLLKH--YC- 372
+K + ++ ++ LQK L + + L LLK Y
Sbjct: 189 LKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 373 ------DVDSDKTFQLFDWR----------------------HRPLPEPAIQYARTDTHY 404
+V + K + F+ H L ++ +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 405 LLYVY-DCMKLDLSAAAHGKQNLVLSTFTNS--RNICKLKYEKPVFNEEGYMNIFRSHAL 461
LL Y DC DL LS S + K V ++ I S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESS-- 362
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNH-----MLLQM--AQSIPRDIQGIFA- 513
LN + R+++ R++ V P +LL + I D+ +
Sbjct: 363 LNVLEPAEYRKMFD---RLS---------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 514 CCNP--VPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNN 571
V + KE + I +I L+ +++ L+ + V
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVK------------LENEYALHRSIV-------- 450
Query: 572 QQKYALRELYKWRDRIARDKDESTGYV---LPNHML-LQMAQSIPRDIQGIFACCNPVPQ 627
Y + + + D I D Y + +H+ ++ + + + +F
Sbjct: 451 -DHYNIPKTFDSDDLIPPYLD---QYFYSHIGHHLKNIEHPERM-TLFRMVF-------- 497
Query: 628 TVKEHVLDIHAIILKARLQPLTKPVEKLQPSLD---GMKKKKQQQQVSPPHDSMDCLNYK 684
LD L+ +++ + L+ +K K + P
Sbjct: 498 ------LDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 685 GLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDK 723
P N+IC+ + +I L ED+
Sbjct: 550 DFLPKIEENLICSK-----------YTDLLRIALMAEDE 577
Score = 72.2 bits (176), Expect = 6e-13
Identities = 99/680 (14%), Positives = 197/680 (28%), Gaps = 228/680 (33%)
Query: 309 DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP-MPRQSLAYL 367
D E K+I+ VF + F V FD CK + MP+ L+
Sbjct: 8 DFETGEHQYQYKDILSVF----------EDAF----VDNFD----CKDVQDMPKSILSKE 49
Query: 368 -LKHYCDVDSD--KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD---LSAAAH 421
+ H T +LF W E +Q +V + ++++ L +
Sbjct: 50 EIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQK---------FVEEVLRINYKFLMSPIK 99
Query: 422 GKQN---LVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRD 478
+Q ++ + R+ +L + VF + N+ R L +Q AL EL
Sbjct: 100 TEQRQPSMMTRMYIEQRD--RLYNDNQVFAK---YNVSRLQPYLKLRQ--ALLEL----- 147
Query: 479 RIARDKDESTGYVLPNHML--------LQMAQSIPRDIQ---GIF----ACCNPVPQTVK 523
VL + +L L + S + IF CN
Sbjct: 148 -------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN------- 193
Query: 524 EHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQKYALRELYKW 583
+++ + ++KL +D + S + + LR L K
Sbjct: 194 -------------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 584 RDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHA-IILK 642
+ Y + LL + ++Q + ++ I+L
Sbjct: 241 KP-----------Y---ENCLL-----VLLNVQN--------AKAWN--AFNLSCKILLT 271
Query: 643 AR-------LQPLTKPVEKLQPSLDGMKKKKQQQQVSPPHDSMDCLNYK--GLPPVFPNN 693
R L T L + + + + L+ + LP
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCRPQDLPRE---- 321
Query: 694 IICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKE 753
+ + P+ +++ I D + + ++ + + +
Sbjct: 322 -VLTTN--------PR--RLSIIAESIRDGL--------------ATWD--NWKHVNCDK 354
Query: 754 YAKAIQEKVDK-ENAEQKKI-DALT--PQVKTEPEENVKITQEPVVLK----QIKSEEKE 805
I+ ++ E AE +K+ D L+ P + I ++L + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIP--TILLSLIWFDVIKSDVM 405
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKI-------------- 851
V + K + ++ +E P+ I +E + + H+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPS---IYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 852 KSEPKEND-----------SSKEKPEESNEKTK--------RHKIKSEPKENDSSKGKSG 892
P D + E PE KI+ + ++ SG
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD----STAWNASG 518
Query: 893 GTISTV-DFSKVNYNKYMAK 911
++T+ Y Y+
Sbjct: 519 SILNTLQQLKF--YKPYICD 536
Score = 60.6 bits (146), Expect = 2e-09
Identities = 59/441 (13%), Positives = 124/441 (28%), Gaps = 139/441 (31%)
Query: 47 HENSLLI----ASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEAN 102
+EN LL+ + + + ++T + + + + + L+ LT
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 103 DK--LLESINTRIDVMAGTKTPSVLPSQ-----PKIVKESWNKNAKASNVWQEVHDNKKK 155
K LL+ ++ R P LP + P+ + S + + + D
Sbjct: 303 VKSLLLKYLDCR---------PQDLPREVLTTNPRRL----------SIIAESIRDGLAT 343
Query: 156 SANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESF 215
NW +N + +++S L + ++ L++
Sbjct: 344 WDNWKHVNCD---------KLTTIIESSLNVLEPAEYRK---MFDRLSVFPP-------- 383
Query: 216 CHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMI----TEPEQVTQLVSELKQQQEI 271
++P T L+ + V +V++L + +
Sbjct: 384 --------SAHIP------------------TILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 272 AIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK-NIVKVFHGAD 330
+ Y ++ E+ L+ + D NI K F D
Sbjct: 418 EKQPKESTISIPSIY--------------LELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 331 SDIKWLQKDFGLYVVG--MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDW--- 385
+L + F + +G + + + +L D F +
Sbjct: 464 LIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRM---VFL-----D---------FRFLEQ 505
Query: 386 --RHRPLPEPAI--------------QY-ARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 428
RH A Y D Y V + +NL+
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE----ENLIC 561
Query: 429 STFTNSRNICKLKYEKPVFNE 449
S +T+ I + ++ +F E
Sbjct: 562 SKYTDLLRIALMAEDEAIFEE 582
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics,
protein structure initiative, center for eukaryot
structural genomics, CESG; 2.10A {Arabidopsis thaliana}
SCOP: c.55.3.5 PDB: 2q3s_A
Length = 206
Score = 63.5 bits (154), Expect = 2e-11
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)
Query: 287 TCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 345
+++STR+ + K D + L K + V + D+ L+++ GL +
Sbjct: 73 LSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIR 132
Query: 346 GMFD-THQACKFLPMPR---QSLAYLLKHYCDVDSDKTFQLF-DWRHRPLPEPAIQYART 400
+ A + L D + + W + PE ++ A
Sbjct: 133 NAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKW-EKAGPEEQLEAAAI 191
Query: 401 DTHYLLYVYDCM 412
+ ++ V+D +
Sbjct: 192 EGWLIVNVWDQL 203
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 50.2 bits (119), Expect = 6e-07
Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 789 ITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEES-----N 843
I Q + ++E E + +E+++K L+E + + + K +K E +
Sbjct: 74 IAQADRL-----TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 844 EKTKQHKIKSEPKENDSSKEKPEE 867
E+ +++KI + + ++ +
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDAD 152
Score = 44.8 bits (105), Expect = 4e-05
Identities = 13/82 (15%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEM----EKEKRKKILREREEEKEEQPATKKIKV 836
+ + +TQEP +++ + E++++++ K ++ + +++ EE + +V
Sbjct: 75 AQADR---LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 837 EKPEESNEKTKQHKIKSEPKEN 858
EK + +N + + +P +
Sbjct: 132 EKNKINNRIADKAFYQ-QPDAD 152
Score = 42.1 bits (98), Expect = 3e-04
Identities = 12/90 (13%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS 860
++ + E E +K E+ + +E + +++ +Q + K+ +
Sbjct: 75 AQADRLTQ-EPESIRKWREEQRKRLQEL-----------DAASKVMEQEWREKAKKDLEE 122
Query: 861 SKEKPEESNEKTKRHKIKSEP---KENDSS 887
++ E EK K + ++ ++ D+
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 38.2 bits (88), Expect = 0.005
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 20/78 (25%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
+E K +QE + A + + K + EE + E +
Sbjct: 92 EEQRKRLQEL---DAASKVMEQEWREKAKKDLEEWNQRQSE-----------------QV 131
Query: 812 EKRKKILREREEEKEEQP 829
EK K R ++ +QP
Sbjct: 132 EKNKINNRIADKAFYQQP 149
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 47.3 bits (111), Expect = 2e-05
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 719 FFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQ 778
F K++ KY + K + E Q +LKSKE + D+ E++K +
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 779 VKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEK--RKKILREREEEKEEQPATKKIKV 836
+ + K+ E + E+KE+ E K +K+ +R + +EQ T +K+
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554
Query: 837 EKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKT 872
++ E+ ++ Q + + E + K T
Sbjct: 555 QEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 46.9 bits (110), Expect = 3e-05
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 3/122 (2%)
Query: 763 DKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRERE 822
EN + + P+ E V E + K E E K ++ +
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE--GVAT 70
Query: 823 EEKEEQPATKKIKVEKPEESNEKTKQ-HKIKSEPKENDSSKEKPEESNEKTKRHKIKSEP 881
+ PA+ + + E+ K K E S++ KP+ E + + ++
Sbjct: 71 ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Query: 882 KE 883
E
Sbjct: 131 DE 132
Score = 45.7 bits (107), Expect = 8e-05
Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 6/205 (2%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
L++ + + A + + + E ++ E ++ K E+ E V
Sbjct: 14 LENLYFQGEETAVPENSGANTELVSGESEHSTNEADK----QNEGEHARENKLEKAEGVA 69
Query: 809 MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEES 868
E E + + A+ EK E +T +++PK + ++ KPE +
Sbjct: 70 TASETASPASNEAATTETAEAASAAKPEEKASEVVAETP--SAEAKPKSDKETEAKPEAT 127
Query: 869 NEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGGKQNK 928
N+ + K + K + K +
Sbjct: 128 NQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRG 187
Query: 929 KKKNSKRKPFLFLWLSQNILQLFIW 953
+ R+ + +
Sbjct: 188 SVVLASRRTGHLVNEKASKEAKVQA 212
Score = 35.3 bits (80), Expect = 0.11
Identities = 10/90 (11%), Positives = 23/90 (25%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS 860
E + E+ + E + + +K E + K+E S
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72
Query: 861 SKEKPEESNEKTKRHKIKSEPKENDSSKGK 890
P + T + + + +
Sbjct: 73 ETASPASNEAATTETAEAASAAKPEEKASE 102
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 43.3 bits (102), Expect = 4e-04
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 9/150 (6%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLK-QIKSEEK 804
+ K E++ E + +I+ + + E K+ Q+ + L+ Q++ EE
Sbjct: 912 EEMRVRLAAKKQELEEILHE--MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 805 EKVEMEKEKRK-----KILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
+ +++ EK K + + E+Q + + EE + + E K +
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 860 SSKEKPE-ESNEKTKRHKIKSEPKENDSSK 888
+K K + ES ++K E K +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Score = 35.6 bits (82), Expect = 0.10
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKV-EME 810
++ I E + E+K L + E+ + ++ L+ +E K ++ + E
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094
Query: 811 KEKRKKILREREEEKEEQPATKKIK-----VEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
+E + + R +E ++ A KKI+ + +E E K + K+E K+ E+
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE-KQKRDLSEEL 1153
Query: 866 EESNEK 871
E +
Sbjct: 1154 EALKTE 1159
Score = 35.6 bits (82), Expect = 0.11
Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 27/175 (15%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK 780
ED + I ++ K+ + E +R +EK + K +++ +++
Sbjct: 989 EDDILIMEDQNNKLTKERKLLE---ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKR------------KKILREREEEKEEQ 828
++ K QE EK K ++E E L+ + +KEE+
Sbjct: 1046 VRLKKEEKSRQE---------LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Query: 829 PATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
++E E S + KI+ +E E EK R+K + + ++
Sbjct: 1097 LQAALARLED-ETSQKNNALKKIRELESHISDLQEDLES--EKAARNKAEKQKRD 1148
Score = 34.8 bits (80), Expect = 0.20
Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 1/153 (0%)
Query: 736 LKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVV 795
LK +R E Q + + K Q+K + E E ++ + K +E ++ E
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 796 LKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
+ + E E+ + R EE+EE+ + + +K ++ ++ +++ E
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE-QLEEEE 968
Query: 856 KENDSSKEKPEESNEKTKRHKIKSEPKENDSSK 888
+ + ++ K K+ + E+ ++K
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 34.4 bits (79), Expect = 0.23
Identities = 28/161 (17%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAE-QKKIDALTPQV 779
E+K K + K + S E ++ KS++ + I+ K++ E+++ ++I L Q+
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 780 KTEPEENVKITQEPVVLK-QIKSEEKEKVEMEKEKR------KKILREREEEKEEQPATK 832
+ K +E +++ E +K K+ R + + E EK + +
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 833 KIKVEKPEESNEKTKQ--HKIKSEPKENDSSKEKPEESNEK 871
K K + EE + + + + + ++ ++K
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 33.7 bits (77), Expect = 0.41
Identities = 23/154 (14%), Positives = 61/154 (39%), Gaps = 19/154 (12%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
+ + + ++E+ Q + ++K ++ + + Q KE+ +
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME------DQNNKLTKERKLL 1009
Query: 810 E------------KEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKE 857
E +E++ K L + + + E + +++++K E+S ++ ++ K K E E
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE-GE 1068
Query: 858 NDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKS 891
+ E+ E + K + KE + +
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.2 bits (102), Expect = 5e-04
Identities = 19/149 (12%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Query: 729 NKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENA--EQKKIDALTPQVKTEPEEN 786
I K R + ++ + +Q + A E KK+ V+ + +
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH 923
Query: 787 VKITQEPVVLKQ-IKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEK 845
+ + + + L++ I + KE + ++ + E ++ + +++++ E K
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM---SEEEAK 980
Query: 846 TKQHKIKSEPKENDSSKEKPEESNEKTKR 874
+++ S +E +++ ++ + K
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 42.0 bits (99), Expect = 0.001
Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 17/173 (9%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEY------AKAIQEKVDKENAEQKKIDALTPQVKTEP 783
Y + + Y+R + +E A++++ + KI L ++ +
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941
Query: 784 EENVKITQEPVVLKQIKSEEKEKVE--------MEKEKRKKILREREEEKEEQPATKKIK 835
+E + ++ L+ S E EK+ E+E + R ++E K++
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001
Query: 836 VEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSK 888
+ E+ + K K E + + +E N K K + + +D +K
Sbjct: 1002 QTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051
Score = 42.0 bits (99), Expect = 0.001
Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQE-PVVLKQIKSEEKEKVE 808
K + + I E+ + + +K++ L TE E+ + + ++ K+ +
Sbjct: 929 KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988
Query: 809 MEKE---------KRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
+++E + + + EE ++ + V + +E N K K + + +D
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Query: 860 SSKEKPEESNEKTKRHKIKSE 880
+KE E +K + E
Sbjct: 1049 QAKEITETMEKKLVEETKQLE 1069
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 40.2 bits (93), Expect = 0.004
Identities = 20/121 (16%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEK----- 813
Q + + + + ++ + + + + +V++ E Q + + E +E+E
Sbjct: 630 QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE 689
Query: 814 RKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTK 873
R+KIL + E EK + + +++E + E T K ++E + + E +
Sbjct: 690 RQKILDQSEAEKARK---ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKL 746
Query: 874 R 874
+
Sbjct: 747 K 747
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
exonuclease, transferase, transferase/DNA complex; HET:
US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Length = 605
Score = 38.7 bits (91), Expect = 0.009
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 252 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD--YI--------- 300
I + E + +++L++ A D E + + + + YI
Sbjct: 10 ILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA 69
Query: 301 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM-FDT 350
D + LE+L +L D+ +KV D L +G+ + G+ FDT
Sbjct: 70 PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGIELRGIAFDT 119
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 38.3 bits (90), Expect = 0.012
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 243 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 302
P S+ + + V+E + A+ +E + + + + +
Sbjct: 4 PSSEEEKPLAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLR 63
Query: 303 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDT 350
L D+ K + L+ G+ + G FD
Sbjct: 64 PETA-LADPQFVAWLGDETKKKSMFDSKRAAVALKW-KGIELCGVSFDL 110
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 37.0 bits (85), Expect = 0.032
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
++ +Q K+D + + K + + + VV + K+ ++ + ++ K
Sbjct: 467 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 526
Query: 812 EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEK 864
+ + +REE K+ T K+ P + K+ + E N + +EK
Sbjct: 527 LEVQA--TDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREK 577
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 36.8 bits (84), Expect = 0.047
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 15/142 (10%)
Query: 793 PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK 852
P L + KE + E K + E + P T++ + +E + K
Sbjct: 14 PADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEK----- 68
Query: 853 SEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKP 912
PKE+ + KPE T P+ K + GT++ + V YN+ +
Sbjct: 69 --PKEDKPAAAKPETPKTVT--------PEWQTVEKKEQQGTVTIREEKGVRYNQLSSTA 118
Query: 913 GKSNQKKKGKGGKQNKKKKNSK 934
N K K+ +
Sbjct: 119 QNDNAGKPALFEKKGLTVDANG 140
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 35.3 bits (81), Expect = 0.12
Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 17/221 (7%)
Query: 676 DSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIK 735
++D N + + P N ++ + ++ + + + K +
Sbjct: 1827 RNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLK-R 1885
Query: 736 LKTSRFETP--YQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEP 793
+ TP Y F+ + I EK D+ EQ ++ +++ + E VK Q
Sbjct: 1886 QGRQNYVTPRHYLDFIN--QVVLLINEKRDQLEEEQLHLNIGLKKLR-DTEAQVKDLQVS 1942
Query: 794 VVLKQIKSEEK--------EKVEMEK---EKRKKILREREEEKEEQPATKKIKVEKPEES 842
+ K + + K +++ ++ E ++K RE + + + + ++ K
Sbjct: 1943 LAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYAD 2002
Query: 843 NEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
EK + E E + + + I + K
Sbjct: 2003 LEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKS 2043
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 32.9 bits (75), Expect = 0.14
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 749 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVE 808
LKS E K + ++ ++ ++ + K E+ V + QE L+ E++ +
Sbjct: 6 LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA 65
Query: 809 MEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSE 854
+ E+R L + + + E + ++E EE N + K K E
Sbjct: 66 -DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 34.9 bits (80), Expect = 0.15
Identities = 11/97 (11%), Positives = 30/97 (30%)
Query: 840 EESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVD 899
++ + + +E ++ E + +K ++ K P + S +
Sbjct: 7 VAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDE 66
Query: 900 FSKVNYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRK 936
++ + + + G G K K+K
Sbjct: 67 VARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKK 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 34.7 bits (80), Expect = 0.16
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 761 KVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE 820
K+D + K + + + V + E M +E I +
Sbjct: 120 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYK 179
Query: 821 REEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSK---EKPEESNEKTKRHK 876
+E E+ ++ K K N + ++K+ + +E R +
Sbjct: 180 KEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFE 238
Score = 33.1 bits (76), Expect = 0.41
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 788 KITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTK 847
KI + V K + + + K K + + E+ Q +++ + E +
Sbjct: 120 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQ---SPVELSRMFEEVSGSI 176
Query: 848 QHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
Q+K + E + K + R +I E K
Sbjct: 177 QYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKT 212
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 33.5 bits (76), Expect = 0.16
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 796 LKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
L I ++ +K E+ K +R++ +R +E K+ + A+KK + + + + KI
Sbjct: 87 LADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPV 146
Query: 856 K 856
K
Sbjct: 147 K 147
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 33.8 bits (76), Expect = 0.21
Identities = 21/146 (14%), Positives = 52/146 (35%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
Q+ L++ E + QE ++ +K+ + E N I L Q KE
Sbjct: 48 QKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKE 107
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
E + L+E+++ EE + + ++ K++S + + +
Sbjct: 108 NREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAEL 167
Query: 866 EESNEKTKRHKIKSEPKENDSSKGKS 891
+ + + H+ + + + +
Sbjct: 168 LKHLAEKREHEREVIQRAIEENNNWI 193
Score = 33.4 bits (75), Expect = 0.29
Identities = 20/130 (15%), Positives = 55/130 (42%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK 780
E++ + ++++ K E QR ++ + ++ + E K + + +
Sbjct: 107 ENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAE 166
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPE 840
K E V+++ E ++M KEK + + +E +E A ++++ +
Sbjct: 167 LLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKD 226
Query: 841 ESNEKTKQHK 850
+ E+ +++K
Sbjct: 227 KHAEEVRKNK 236
Score = 33.0 bits (74), Expect = 0.36
Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 756 KAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRK 815
+++E K A +++ ++ E + +E V+++ E ++M KEK
Sbjct: 42 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHERE--VIQRAIEENNNWIKMAKEKLA 99
Query: 816 KILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRH 875
+ + +E +E A ++++ ++ E+ +Q I+ +KEK + E K +
Sbjct: 100 QKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKEN 159
Query: 876 KIKSEPKE 883
+ E +
Sbjct: 160 RKYQEAEL 167
Score = 33.0 bits (74), Expect = 0.37
Identities = 22/144 (15%), Positives = 56/144 (38%), Gaps = 5/144 (3%)
Query: 742 ETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKS 801
P +R +E K ++ ++ ++ ++ + + E ++ E +
Sbjct: 35 SLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMA 94
Query: 802 EEKEKVEMEKEKRKKI-----LREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
+EK +ME K + + ER +EK++ + + + + K + K+ + +
Sbjct: 95 KEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKME 154
Query: 857 ENDSSKEKPEESNEKTKRHKIKSE 880
N +++ E K K + E
Sbjct: 155 SNKENRKYQEAELLKHLAEKREHE 178
Score = 29.2 bits (64), Expect = 5.9
Identities = 18/150 (12%), Positives = 56/150 (37%), Gaps = 4/150 (2%)
Query: 735 KLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPV 794
+ + + + + +E+ + + ++ +EN K+ K E + +
Sbjct: 56 ERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAH--- 112
Query: 795 VLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSE 854
+ +EK + +E R++ + E + K+E +E+ + + +K
Sbjct: 113 -FAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHL 171
Query: 855 PKENDSSKEKPEESNEKTKRHKIKSEPKEN 884
++ + +E + + E+ ++ K
Sbjct: 172 AEKREHEREVIQRAIEENNNWIKMAKEKLA 201
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 33.4 bits (75), Expect = 0.24
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 801 SEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDS 860
++E E + +E+++K L+E + + + K +K + +Q + + K N+
Sbjct: 96 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK-DLEEWNQRQSEQVEKNKINNR 154
Query: 861 SKEKP 865
+K
Sbjct: 155 IADKA 159
Score = 29.1 bits (64), Expect = 6.0
Identities = 12/70 (17%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEM----EKEKRKKILREREEEKEEQPATKKIKV 836
+ ++TQEP +++ + E++++++ K ++ + +++ EE + +V
Sbjct: 87 AAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 146
Query: 837 EKPEESNEKT 846
EK + +N
Sbjct: 147 EKNKINNRIA 156
Score = 28.7 bits (63), Expect = 6.8
Identities = 11/79 (13%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 802 EEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
+ +++ E E +R+ EE+ ++ +++ + +++ +Q + K+ +
Sbjct: 90 AQADRLTQEPES----IRKWREEQRKR-------LQELDAASKVMEQEWREKAKKDLEEW 138
Query: 862 KEKPEESNEKTKRHKIKSE 880
++ E EK K + ++
Sbjct: 139 NQRQSEQVEKNKINNRIAD 157
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein
complex, structural protein/DNA complex; 1.91A
{Sterkiella nova} SCOP: b.40.4.3
Length = 385
Score = 34.2 bits (77), Expect = 0.24
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 1/138 (0%)
Query: 797 KQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
K + KV+ + + K + + K+ +S +K ++ +
Sbjct: 230 KAADHTDGAKVKGGAKGKGKAAAKAAKGKKLSAKKGDSSAADVRKSVDKIVKYTPSKGSR 289
Query: 857 ENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSN 916
++ K + + + + + K S GK ++T + + KY+ K
Sbjct: 290 KDTPQKSQAPAAGKSSAKKGGKKAVPSAPSPSGKKS-ALTTDKMTMAQFVKYLDWHEKKK 348
Query: 917 QKKKGKGGKQNKKKKNSK 934
K GGK K+ K
Sbjct: 349 GGKVSSGGKVLGKRSAGK 366
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 34.0 bits (77), Expect = 0.33
Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 774 ALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKK 833
+ + + V+ V+ +++ + K + +KEK +++E +E++ +
Sbjct: 794 SYPRMYEEASGKEVEKVATAVLSTTARAKARAK-KTKKEKGPNEEEKKKEHEEKEKERET 852
Query: 834 IKVEKPEESNEKTKQHKIKSEPK----ENDSSKEKPEE 867
K E + +K K K +N + +
Sbjct: 853 NKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQS 890
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 33.6 bits (76), Expect = 0.35
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 9/133 (6%)
Query: 759 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKIL 818
K+ + Q+ P ++ + V K K E + + E + ++K+
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 819 REREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPE-ESNEKTKRHKI 877
+ ++ E E Q + E+ + + + E K EK E+ ++ +
Sbjct: 352 KLKDSEAELQ--------RRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQN 403
Query: 878 KSEPKENDSSKGK 890
S E + KGK
Sbjct: 404 SSRTLEKNKKKGK 416
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 33.3 bits (75), Expect = 0.43
Identities = 22/189 (11%), Positives = 56/189 (29%), Gaps = 24/189 (12%)
Query: 766 NAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEK 825
+E+ K + PEE + Q + + K++ E ++ +R+ + +
Sbjct: 160 GSEKAKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVRKFDVDV 219
Query: 826 EE-----------------------QPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSK 862
E+ ++K K ++ + KT + ++ N+ +
Sbjct: 220 EQFHYLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDHKTPEEIYEALGFNNEEPQ 279
Query: 863 EKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGK 922
+ + S ++ S + D + KS ++
Sbjct: 280 RQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVISDIGNKVGDYLGDA-YKSLAREIAD 338
Query: 923 GGKQNKKKK 931
K + K
Sbjct: 339 DVKNFQGKT 347
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 32.8 bits (74), Expect = 0.46
Identities = 16/135 (11%), Positives = 46/135 (34%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
+ L +E A++ +V K + +A ++ + E + + + ++
Sbjct: 46 KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKER 105
Query: 806 KVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
+ +E + + ++++ K++ + ++ KE K
Sbjct: 106 SNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165
Query: 866 EESNEKTKRHKIKSE 880
+E + KI S
Sbjct: 166 KEDLVEKTEPKIYSF 180
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 32.0 bits (73), Expect = 0.59
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 799 IKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEN 858
++ EK+ +E + + EEE QP + V E E+ + K+ E
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Query: 859 DSSKEKPEESNEK 871
++ + E
Sbjct: 61 LAAAKAQIAELEA 73
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 31.6 bits (71), Expect = 0.60
Identities = 19/130 (14%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 763 DKENAEQKKIDALTPQVKTEPEENVKITQEPVVL-KQIKSEEKEKVEMEKEKRKKILRER 821
+K + QK+++ ++TE + V++ + + K I E E+++ R +
Sbjct: 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKS 65
Query: 822 EEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEP 881
+ +K+ ++ E+ + ++ +++ + + + EK + + +++
Sbjct: 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125
Query: 882 KENDSSKGKS 891
N S K K+
Sbjct: 126 MLNHSEKEKN 135
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 31.2 bits (70), Expect = 0.85
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 770 KKIDALTPQVKTEPEENVKITQEPV--VLKQIKSEEKEKVEMEK---EKRKKILREREEE 824
KK K ++ V L+ I+ + EK E+ E + ++ER ++
Sbjct: 62 KKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKK 121
Query: 825 KEEQPATKKIKVEKPEESNEKTKQHKIKSEPK 856
+++ KK +V K +++ K + ++
Sbjct: 122 TKDEKKAKKAEVAKSQKTQSKGGATQRGAKGP 153
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 32.1 bits (73), Expect = 1.0
Identities = 16/165 (9%), Positives = 45/165 (27%)
Query: 757 AIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKK 816
+Q + + +EQ + + E E E + + + E+ +
Sbjct: 38 IVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPV 97
Query: 817 ILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHK 876
+ E E+ + E + + Q + ++ + +E +E +
Sbjct: 98 VEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELET 157
Query: 877 IKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKG 921
+ ++ + K G + K+
Sbjct: 158 ALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRS 202
Score = 31.3 bits (71), Expect = 1.9
Identities = 23/176 (13%), Positives = 58/176 (32%), Gaps = 1/176 (0%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
+ + ++E V + + A+ Q + E + VV + E EK +
Sbjct: 27 EVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQP 86
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSK-EKPEES 868
E E + EE E ++ + + E + ++E + + + + E +
Sbjct: 87 EAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEAA 146
Query: 869 NEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKGG 924
E+ ++++ + + + + + KP K + K
Sbjct: 147 KEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRS 202
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 30.8 bits (69), Expect = 1.1
Identities = 20/106 (18%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 750 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEM 809
+ + IQ+K+ E AE+++ +K E+ + V+++ E ++M
Sbjct: 40 RRDPSLEEIQKKL--EAAEERRKYQEAELLKHLAEKREHERE---VIQKAIEENNNFIKM 94
Query: 810 EKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEP 855
KEK + + +E +E A ++++ ++ E+ +++K E
Sbjct: 95 AKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEE 140
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 31.8 bits (73), Expect = 1.1
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 778 QVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVE 837
+ T P ++ Q+ L +++ E+ V+ ++ ++ LR+ E+ EQ K +
Sbjct: 388 RSFTTPPNLKELEQK---LDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWK 444
Query: 838 KPEESNEKT 846
+ +
Sbjct: 445 EKQGQENSE 453
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 31.8 bits (71), Expect = 1.2
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 4/153 (2%)
Query: 741 FETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIK 800
R L K + K+ + I + + + T+ P + + I
Sbjct: 125 TTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDRTKCPKIQRLIT 184
Query: 801 SE-EKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKEND 859
E K + EK ++ ++ ++E + K + K + + + E +
Sbjct: 185 PERILRKKVYKAEKTQRYVKTNAAKEEYE---KFLSEWKKQRAAKAHAASAPVVEAPKKV 241
Query: 860 SSKEKPEESNEKTKRHKIKSEPKENDSSKGKSG 892
+ +K + KT K+ P +
Sbjct: 242 EAPKKVDPKAAKTTPAATKATPAATKVAPKTQA 274
Score = 29.1 bits (64), Expect = 6.9
Identities = 15/134 (11%), Positives = 32/134 (23%), Gaps = 10/134 (7%)
Query: 814 RKKILREREEEKEEQPATKKIKVEKP-EESNEKTKQHKIKSEPKENDSSKEKPEE----- 867
+K ++R + + + TK K+++ K+ + + + EE
Sbjct: 157 KKSVIRRTFKTAKGKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFL 216
Query: 868 ----SNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKGKG 923
K H + E + K K K +
Sbjct: 217 SEWKKQRAAKAHAASAPVVEAPKKVEAPKKVDPKAAKTTPAATKATPAATKVAPKTQAAK 276
Query: 924 GKQNKKKKNSKRKP 937
+K
Sbjct: 277 TTTPAPAVKDAKKT 290
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 31.7 bits (71), Expect = 1.3
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 9/145 (6%)
Query: 713 IAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKK- 771
++ F G K + R + S E ++ E E+KK
Sbjct: 263 FKKLNEIFGTYSTTGVQKSGYQLQRPLLANADIARIINSNEVQSVVKVAGTTETHERKKN 322
Query: 772 -------IDALTPQVKTEPEENVKITQEPVVLKQIKSEEK-EKVEMEKEKRKKILREREE 823
+ L P K E+ K + +Q + + + K+ + + +
Sbjct: 323 PLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNK 382
Query: 824 EKEEQPATKKIKVEKPEESNEKTKQ 848
EE A + + ++ K+
Sbjct: 383 ANEEAIAKARQEDADFIAQGQEIKE 407
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 31.2 bits (70), Expect = 1.9
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 794 VVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKS 853
+L + + E+ + +K+ ++ E+ + +P S + + +
Sbjct: 531 NILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIV 590
Query: 854 EPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVD 899
+ E DSS E+++ K K + KEN S+K +D
Sbjct: 591 DSDEEDSSNNADVSEEERSR--KRKLDEKENLSAKRSRIEQKEELD 634
Score = 31.2 bits (70), Expect = 2.0
Identities = 19/135 (14%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 710 DKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQ 769
KK+++ G+ +++ L + ++ + A ++ K+ +
Sbjct: 503 HKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDA 562
Query: 770 KKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQP 829
K +P + Q+ V++ + S+E++ ++ R+R+ +++E
Sbjct: 563 AKSITNGSDDGAQPSTSTAQEQDDVLI--VDSDEEDSSNNADVSEEERSRKRKLDEKENL 620
Query: 830 ATKKIKVEKPEESNE 844
+ K+ ++E+ EE ++
Sbjct: 621 SAKRSRIEQKEELDD 635
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 31.1 bits (71), Expect = 1.9
Identities = 26/182 (14%), Positives = 56/182 (30%), Gaps = 28/182 (15%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK 780
D + K + + F L +K+ + I++ + E Q K+ A T K
Sbjct: 505 SDT---KTVKKDDLTIVAHTFG------LDAKKLNELIEK--ENEMLAQDKLVAETEDRK 553
Query: 781 TEPEE---NVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILRE--REEEKEE-------- 827
EE ++ E EK K++ K ++ L + + K +
Sbjct: 554 NTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEEL 613
Query: 828 ----QPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKE 883
+ ++ E+ + + + + + EK + K +
Sbjct: 614 ASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGDVD 673
Query: 884 ND 885
D
Sbjct: 674 MD 675
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 31.2 bits (71), Expect = 2.3
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 2/108 (1%)
Query: 721 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVK 780
+ +GSN+ + F + + Q +
Sbjct: 904 TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE 963
Query: 781 TEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQ 828
++ Q+ +K K + E E+ +KI E
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKI--EDLHHHHHH 1009
>1g03_A HTLV-I capsid protein; beta hairpin loop, helix core, viral
protein; NMR {Human t-lymphotropic virus 1} SCOP:
a.73.1.1
Length = 134
Score = 29.5 bits (65), Expect = 2.8
Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA- 513
+ H N + + +++L + +++ S ++ + +Q +D+Q +
Sbjct: 2 VMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQY 61
Query: 514 CCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQ 573
C+ + ++ H + ++I +A + +T S + + + Q + P ++
Sbjct: 62 LCSSLVASL--HHQQLDSLISEAETRGIT--------SYNPLAGPLRVQANNPQQQGLRR 111
Query: 574 KYALRELYKWRDRIARDKDES 594
+Y L + KD S
Sbjct: 112 EYQQLWLAAFAALPGSAKDPS 132
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 30.7 bits (69), Expect = 3.1
Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 12/142 (8%)
Query: 733 KIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQE 792
K LKT Y L+++ + AIQ +D++ A+Q + P
Sbjct: 733 KKGLKTG---MYY---LRTQAASAAIQFTIDQKIADQATENVADISNLKRPS------YM 780
Query: 793 PVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIK 852
P S+ + E +E PA + ++ K++
Sbjct: 781 PSSASYAASDFVPAAVTANATIPSLDSSSEASREASPAPTGSHSLTKGMAELNVQESKVE 840
Query: 853 SEPKENDSSKEKPEESNEKTKR 874
+ E+ +
Sbjct: 841 VPEVPAPTKNEEKAAPIVDDEE 862
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 28.2 bits (64), Expect = 3.6
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 761 KVD-KENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILR 819
+VD KE + A P + +++ + +L I+ E K E E +
Sbjct: 6 RVDIKEEVNHFVLYADLPGID---PSQIEVQMDKGIL-SIRGERKS--ESSTETERFSRI 59
Query: 820 ER 821
ER
Sbjct: 60 ER 61
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 30.3 bits (68), Expect = 3.6
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 798 QIKSEE----KEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQH 849
++K + + ++ E +K E K I + P K H
Sbjct: 2 KLKHKRDDKMRFDIKKVLELAEKDFETAWRETRALIKDKHIDNKYPRLKPVYGKPH 57
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 30.2 bits (68), Expect = 4.0
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 23/137 (16%)
Query: 758 IQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVV--LKQIKSEEKEKVEMEKEKRK 815
+ E+ + + E+++ D P++ T +PV L +I +E E E +
Sbjct: 54 LPEEGEGLDLEEEEEDLPIPKISTS---------DPVRQYLHEIGQVPLLTLEEEVELAR 104
Query: 816 KILREREE------------EKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKE 863
K+ E + + KI K+ +E D +
Sbjct: 105 KVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLK 164
Query: 864 KPEESNEKTKRHKIKSE 880
+ +++ + E
Sbjct: 165 SLPKEHKRYLHIAREGE 181
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 4.3
Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 26/54 (48%)
Query: 194 EKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 247
EK ALK L + L LY D P AL + T
Sbjct: 18 EK-QALKKL-----------------QASLKLYAD--D----SAP--ALAIKAT 45
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 29.8 bits (68), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
S VL + +MA R + IFA NP+P+ + L+ A I
Sbjct: 266 SAPGVLKAEWISKMA---ARPV--IFAMANPIPEIYPDEALEAGAYI 307
Score = 29.8 bits (68), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 594 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 640
S VL + +MA R + IFA NP+P+ + L+ A I
Sbjct: 266 SAPGVLKAEWISKMA---ARPV--IFAMANPIPEIYPDEALEAGAYI 307
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 28.8 bits (65), Expect = 4.6
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 761 KVD-KENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILR 819
++D KE E A P VK +E VK+ E + + E + E E + K
Sbjct: 45 RMDWKETPEAHVFKADLPGVK---KEEVKVEVEDGNVLVVSGERTK--EKEDKNDKWHRV 99
Query: 820 ER------------EEEKEEQPATK------KIKVEKPEESNEKTKQHKI 851
ER E+ K E+ + V K E + K +I
Sbjct: 100 ERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQI 149
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 29.4 bits (65), Expect = 5.4
Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 10/161 (6%)
Query: 730 KYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKI 789
+ K + + + + K KE++E D +
Sbjct: 95 HDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDR---- 150
Query: 790 TQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQH 849
++ + +K E+ K++ +E + + ++ EK ++
Sbjct: 151 ------IQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAEN 204
Query: 850 KIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGK 890
+ KE +E E EK K ++ + + K
Sbjct: 205 LRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKNYMKEV 245
Score = 28.6 bits (63), Expect = 9.3
Identities = 15/157 (9%), Positives = 47/157 (29%), Gaps = 4/157 (2%)
Query: 732 QKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQ 791
++ R LK + + I + + +++ + + + E + Q
Sbjct: 62 LFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQ 121
Query: 792 EPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKI 851
+ +S E K+ +KK+ +R + + + K + E H
Sbjct: 122 IAELKALKESSESNI----KDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQ 177
Query: 852 KSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSK 888
+ +++ + ++ + +
Sbjct: 178 EVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQ 214
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 29.0 bits (64), Expect = 5.5
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 803 EKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQH--KIKSEPKENDS 860
K +K+K++ + R + K + ++ ++K + +
Sbjct: 64 VKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIE 123
Query: 861 SKEKPEESNEKTKRHKIKSEPKENDSSKGKSGG 893
K + K + K+E K+ G GG
Sbjct: 124 KKRADRKLQGKDVKAAKKAETKKTKQPVGAKGG 156
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B*
1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B*
1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B*
1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Length = 338
Score = 29.6 bits (66), Expect = 5.8
Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 14/154 (9%)
Query: 792 EPVVLKQIKSEEKEKVEME-------KEKRKKILREREEEKEEQPATKKIKVEKPEESNE 844
P+ +++ E E ++ R + ++ P + ++ E+ +
Sbjct: 78 PPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGD 137
Query: 845 KTKQHKIK-SEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKV 903
I + P S +K + E S+ ++ + GG + D +
Sbjct: 138 LGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRA 197
Query: 904 NYNKYMAKPGKSNQKKKGKGGKQNKKKKNSKRKP 937
+Y G + KGKG + K+ +++
Sbjct: 198 --GEYADVAGVT----KGKGTQGPVKRWGVQKRK 225
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.5 bits (66), Expect = 6.0
Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 15/171 (8%)
Query: 732 QKIKLKTSRFETPYQRFLKS-KEYAKAIQEKVDKENAEQKKIDALTPQV---------KT 781
+++ + S+ P +F+ ++ + L + K
Sbjct: 313 TELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKI 372
Query: 782 EPEENVKITQE-PVVLKQIKSE-EKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKP 839
+P+E I + + + K E E + + E+E+R+ E + +EQ ++ +
Sbjct: 373 QPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRA---RMEAQLKEQRERERKMRKAK 429
Query: 840 EESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGK 890
E S E + + S + + + + KR + + K
Sbjct: 430 ENSEESGEFDDLVSALRSGEVFDKDLSKLKRNRKRITNQMTDSSRERPITK 480
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 29.3 bits (66), Expect = 6.0
Identities = 8/74 (10%), Positives = 21/74 (28%)
Query: 808 EMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEE 867
E+ L K E ++ + K + + + +E+P
Sbjct: 279 PRVLERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPASPKRERPTS 338
Query: 868 SNEKTKRHKIKSEP 881
++K++
Sbjct: 339 PAPHRPPKRVKAKA 352
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 29.4 bits (67), Expect = 6.5
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 487 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 533
S G +L + +M+ + + IFA NPVP+ E + A I
Sbjct: 271 SRGNILKPEWIKKMS---RKPV--IFALANPVPEIDPELAREAGAFI 312
Score = 29.4 bits (67), Expect = 6.5
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 594 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 640
S G +L + +M+ + + IFA NPVP+ E + A I
Sbjct: 271 SRGNILKPEWIKKMS---RKPV--IFALANPVPEIDPELAREAGAFI 312
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 29.5 bits (67), Expect = 7.5
Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 807 VEMEKEKR-KKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKP 865
+E+E E R ++++ R+ E+E++ + +K+ + + + K + + +
Sbjct: 256 LEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSY 315
Query: 866 EESNEKTKRHKIKSEPKENDSSK 888
+ EK ++ +K + K S
Sbjct: 316 IKYREKRQQQPLKPKEKLERDSN 338
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA
helicase, RECQ family, HRDC DOMA binding protein; NMR
{Homo sapiens}
Length = 101
Score = 27.3 bits (61), Expect = 8.9
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 556 KKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+ KQ+ V+ K L EL + + + + L ++A+S+ D
Sbjct: 4 EFKQKALVAKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDP 63
Query: 616 Q 616
+
Sbjct: 64 E 64
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 28.9 bits (65), Expect = 9.1
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 23/129 (17%)
Query: 752 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEK 811
++ + + ++ AE++ +DAL P K + E E + +
Sbjct: 113 QQEIAKNRARA-EDVAEERILDALLPPAKNQWGE---------------VENHDSHSSTR 156
Query: 812 EKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKI-KSEPKENDSSKEKPEESNE 870
+ +K LRE + + K+I+++ + + E N ++
Sbjct: 157 QAFRKKLREGQLDD------KEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSD 210
Query: 871 KTKRHKIKS 879
KTK+ K+K
Sbjct: 211 KTKKRKMKI 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,461,953
Number of extensions: 850710
Number of successful extensions: 1926
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1757
Number of HSP's successfully gapped: 189
Length of query: 1006
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 903
Effective length of database: 3,825,930
Effective search space: 3454814790
Effective search space used: 3454814790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.4 bits)