RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7894
(1006 letters)
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 292
Score = 210 bits (535), Expect = 6e-62
Identities = 131/285 (45%), Positives = 182/285 (63%), Gaps = 9/285 (3%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA----IESFCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D + HPYEYE+D
Sbjct: 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 60
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 61 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 120
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 121 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 180
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 181 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 240
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LL +YD ++ L + N + SRN+ K ++E +
Sbjct: 241 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRP 280
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 206
Score = 127 bits (320), Expect = 6e-34
Identities = 22/187 (11%), Positives = 64/187 (34%), Gaps = 19/187 (10%)
Query: 246 DTPLMMITEPEQVTQLVSELKQ------QQEIAIDLEY--------HNYRSYQGYTCLMQ 291
T + + ++ +S +++ + + D+ + ++ ++
Sbjct: 18 QTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVK 77
Query: 292 ISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 350
+STR+ + K ++L+ L K + V + D+ L+++ GL + +
Sbjct: 78 LSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINV 137
Query: 351 HQACKFLP----MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 406
+ + L D + + + PE ++ A + ++
Sbjct: 138 GKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIV 197
Query: 407 YVYDCMK 413
V+D +
Sbjct: 198 NVWDQLS 204
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 91.9 bits (228), Expect = 1e-22
Identities = 48/102 (47%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 444 KPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 502
KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+
Sbjct: 1 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 60
Query: 503 SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
+P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 61 ELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKS 102
Score = 78.4 bits (193), Expect = 5e-18
Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 570 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 629
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 21 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 80
Query: 630 KEHVLDIHAIILKARLQPLTKP 651
++ + ++H +I +AR PL K
Sbjct: 81 RQQINEMHLLIQQAREMPLLKS 102
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain
{Escherichia coli [TaxId: 562]}
Length = 193
Score = 91.9 bits (227), Expect = 9e-22
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 7/194 (3%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 310
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + +
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW- 63
Query: 311 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT-HQACKFLPMPRQSLAYLLK 369
L +L D +I K H D++ FG + DT A A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 370 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 429
Y V DK+ DW RPL E +YA D YLL + + ++ A+ G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS--GWLPAALD 181
Query: 430 TFTNSRNICKLKYE 443
R + + E
Sbjct: 182 ---ECRLMQMRRQE 192
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA
polymerase {Escherichia coli [TaxId: 562]}
Length = 195
Score = 73.5 bits (179), Expect = 2e-15
Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 19/185 (10%)
Query: 251 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL------ 304
I + E + +++L++ A D E + + + + +
Sbjct: 9 TILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLD 68
Query: 305 -----KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF--L 357
LE+L +L D+ +KV D L FDT
Sbjct: 69 APDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNS 128
Query: 358 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL------PEPAIQYARTDTHYLLYVYDC 411
R + L + + + ++ L E A +YA D L ++
Sbjct: 129 VAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 188
Query: 412 MKLDL 416
M DL
Sbjct: 189 MWPDL 193
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 96
Score = 67.2 bits (164), Expect = 3e-14
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 556 KKKQQQQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
K+ + + ++ +++ +RELY+WRD IAR DES +V+PN +L + P D+
Sbjct: 1 KESPWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDV 60
Query: 616 QGIFACCNPVPQTVKEHVLDIHAIILKARLQP 647
G+ + N V + V+++ + +I A
Sbjct: 61 IGVVSLTNGVTEHVRQNAKLLANLIRDALRNI 92
Score = 65.3 bits (159), Expect = 1e-13
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 462 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 521
+ +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+ + N V +
Sbjct: 14 IPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEH 73
Query: 522 VKEHVLDIHAIILKAR 537
V+++ + +I A
Sbjct: 74 VRQNAKLLANLIRDAL 89
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli
[TaxId: 562]}
Length = 101
Score = 59.1 bits (143), Expect = 2e-11
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 449 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
E+ + +I + L +Q L+ L WR R AR++D + +V+ L +A+ +P +
Sbjct: 4 EDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSL 62
Query: 509 QGIFACCNPVPQTVKEHVLDIHAIILKAR 537
++ H + A++ KA+
Sbjct: 63 GE-LDSLGLSGSEIRFHGKTLLALVEKAQ 90
Score = 58.0 bits (140), Expect = 5e-11
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 561 QQVSPPHDSNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA 620
+ ++ +Q L+ L WR R AR++D + +V+ L +A+ +P +
Sbjct: 8 RDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE-LD 66
Query: 621 CCNPVPQTVKEHVLDIHAIILKARLQP 647
++ H + A++ KA+ P
Sbjct: 67 SLGLSGSEIRFHGKTLLALVEKAQTLP 93
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA
polymerase {Bacillus stearothermophilus, newly
identified strain as yet unnamed [TaxId: 1422]}
Length = 171
Score = 59.8 bits (144), Expect = 8e-11
Identities = 17/165 (10%), Positives = 38/165 (23%), Gaps = 6/165 (3%)
Query: 257 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 316
+ V+E + A+ +E + + + + +
Sbjct: 5 TLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETA-LADPQFVAW 63
Query: 317 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL--PMPRQSLAYLLKHYCDV 374
L D+ K + L+ FD A L +A K
Sbjct: 64 LGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYE 123
Query: 375 DSDKTFQLFDW---RHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 416
++ R P ++ + + +L
Sbjct: 124 AVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDEL 168
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 35.9 bits (82), Expect = 0.022
Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 3/156 (1%)
Query: 711 KKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQK 770
K LF + + KY + K + E Q +LKSKE + D+ E++
Sbjct: 145 SKPGGYRLFVQKLQDLK-KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 203
Query: 771 KIDALTPQVKTEPEENVKITQEPVVL--KQIKSEEKEKVEMEKEKRKKILREREEEKEEQ 828
K + + + K+ E + ++ +E+ E K+ +K+ +R + +EQ
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 263
Query: 829 PATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEK 864
T +K+++ E+ ++ Q + + E + K
Sbjct: 264 ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 29.3 bits (66), Expect = 0.40
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 470 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 509
+L K R IA + + V + L++MA+ +P
Sbjct: 7 FAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITAS 46
Score = 29.3 bits (66), Expect = 0.40
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 616
+L K R IA + + V + L++MA+ +P
Sbjct: 7 FAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITAS 46
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.7 bits (64), Expect = 2.0
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 773 DALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKEKRKKILREREEEKEEQPATK 832
D + + P +E + E ++ E E K RE E E ++ +
Sbjct: 27 DGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEE 86
Query: 833 KIKVEKPEESNEKTKQHKIKSEPKENDSSK-EKPEESNEKTKRHKIKSEPKE 883
K + K K + + ++ E+ +E ++ + + E KE
Sbjct: 87 NNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer
{Caenorhabditis elegans [TaxId: 6239]}
Length = 250
Score = 29.4 bits (65), Expect = 2.0
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 338 KDFGLYVV----GMFDTHQACKFLPM-PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 391
KD + VV G T+ K + QS A L+ + +D+ + F +P
Sbjct: 191 KDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 29.6 bits (66), Expect = 2.2
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 1/121 (0%)
Query: 802 EEKEKVEMEKEKRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSS 861
+ + E E+ K L E E+ K E + + E + ++ K +S
Sbjct: 9 VKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKAS 68
Query: 862 KEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTISTVDFSKVNYNKYMAKPGKSNQKKKG 921
S +K K + + D + + V S Y + K G S
Sbjct: 69 AVDDAFSKSTSK-AKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNN 127
Query: 922 K 922
Sbjct: 128 S 128
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 27.5 bits (61), Expect = 2.8
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 460 ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 508
A Q +L + R + A D + N +L+ MA+ P +
Sbjct: 6 AQEQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTV 54
Score = 26.3 bits (58), Expect = 5.6
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 577 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 615
+L + R + A D + N +L+ MA+ P +
Sbjct: 16 YGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTV 54
>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell leukemia
virus type 1 [TaxId: 11908]}
Length = 134
Score = 27.7 bits (61), Expect = 4.0
Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 455 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA- 513
+ H N + + +++L + +++ S ++ + +Q +D+Q +
Sbjct: 2 VMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQY 61
Query: 514 CCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQ 573
C+ + ++ H + ++I +A + +T S + + + Q + P ++
Sbjct: 62 LCSSLVASL--HHQQLDSLISEAETRGIT--------SYNPLAGPLRVQANNPQQQGLRR 111
Query: 574 KYALRELYKWRDRIARDKDES 594
+Y L + KD S
Sbjct: 112 EYQQLWLAAFAALPGSAKDPS 132
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 28.6 bits (64), Expect = 4.1
Identities = 15/92 (16%), Positives = 31/92 (33%)
Query: 182 NSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQA 241
+ E+LF L P+ A + + + L++ D Q+
Sbjct: 68 DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQS 127
Query: 242 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 273
P S +++T+ E++ L I +
Sbjct: 128 WPESVIKAIVVTDGERILGLGDLGCYGMGIPV 159
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 28.5 bits (63), Expect = 5.0
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 746 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKE 805
F SK Q+ VD A+++ ++ E+ + ++ + +
Sbjct: 60 AIFADSKNQKTICQQAVDTVLAKKRVD-----SLQLTREQMLTNRFNDLLDR-MDIMFGS 113
Query: 806 KVEMEKEKRKKILREREEEKEEQ 828
+ E+ + +
Sbjct: 114 TGSADIEEWMAGVAWLHCLLPKM 136
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 27.7 bits (61), Expect = 6.0
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 738 TSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLK 797
+ + + + EK + A + + +K E V+ + + L
Sbjct: 150 GTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL-LEVVQSGGKNIELA 208
Query: 798 QIKSEEKEKVEMEKEKRKKILREREEEKEEQPATKK 833
++ ++ K+ + E+ +K + E E+EKEE K+
Sbjct: 209 VMRRDQSLKI-LNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 27.3 bits (60), Expect = 6.4
Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 255 PEQVTQLVSELKQQQEIAIDLE--YHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV 312
E +++ L + + + + + +D V+ +LR+ + +
Sbjct: 39 LETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGL 98
Query: 313 LNEVLTDKNIVKVFHGADSD 332
+ L+ + + + +
Sbjct: 99 MGYRLSPQTLTTIVKRYSKN 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,593,793
Number of extensions: 172665
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 52
Length of query: 1006
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 912
Effective length of database: 1,116,976
Effective search space: 1018682112
Effective search space used: 1018682112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.7 bits)