BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7895
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52656|T2AG_DROME Transcription initiation factor IIA subunit 2 OS=Drosophila
melanogaster GN=TfIIA-S PE=1 SV=1
Length = 106
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 94/105 (89%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
MSYQLYRNTTLGNTLQESLDELIQYG ITP LA KVLLQFDKSIN AL +VK+R+TFK+
Sbjct: 1 MSYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKA 60
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKSSD 105
GKLNTYRFCDNVWT +L DVEFREV EI +V+K+KIVACDGKS +
Sbjct: 61 GKLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGKSGE 105
>sp|B7Q1Q9|T2AG_IXOSC Transcription initiation factor IIA subunit 2 OS=Ixodes scapularis
GN=IscW_ISCW010050 PE=3 SV=1
Length = 118
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/102 (79%), Positives = 92/102 (90%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
MSYQLYRNTTLGNTLQESLDELIQ G ITP LA+KVLLQFDK+IN AL ++VK+RLTFK+
Sbjct: 1 MSYQLYRNTTLGNTLQESLDELIQCGQITPHLALKVLLQFDKAINNALANRVKTRLTFKA 60
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGK 102
G L+TYRFCDNVWTFVL DVEFREV E+ + +K+KIVACDGK
Sbjct: 61 GHLSTYRFCDNVWTFVLKDVEFREVQELVKADKVKIVACDGK 102
>sp|Q9IA78|T2AG_PAROL Transcription initiation factor IIA subunit 2 OS=Paralichthys
olivaceus GN=gtf2a2 PE=3 SV=1
Length = 111
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 91/103 (88%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
M+YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL S+V++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKS 103
G LNTYRFCDNVWTFVL DVEFREV ++ +V+K+KIVACDGKS
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGKS 102
>sp|P52657|T2AG_HUMAN Transcription initiation factor IIA subunit 2 OS=Homo sapiens
GN=GTF2A2 PE=1 SV=1
Length = 109
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
M+YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL +V++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKSS 104
G LNTYRFCDNVWTFVL DVEFREV E+ +V+K+KIVACDGK++
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNT 103
>sp|O08950|T2AG_RAT Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus
GN=Gtf2a2 PE=2 SV=1
Length = 109
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
M+YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL +V++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKSS 104
G LNTYRFCDNVWTFVL DVEFREV E+ +V+K+KIVACDGK++
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNT 103
>sp|Q80ZM7|T2AG_MOUSE Transcription initiation factor IIA subunit 2 OS=Mus musculus
GN=Gtf2a2 PE=2 SV=2
Length = 109
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 91/104 (87%), Gaps = 1/104 (0%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
M+YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL +V++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKSS 104
G LNTYRFCDNVWTFVL DVEFREV E+ +V+K+KIVACDGK++
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNT 103
>sp|Q90YG6|T2AG_ONCMY Transcription initiation factor IIA subunit 2 OS=Oncorhynchus
mykiss GN=gtf2a2 PE=3 SV=1
Length = 108
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 92/104 (88%), Gaps = 1/104 (0%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
M+YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL ++V++R+ FK
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFK- 59
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKSS 104
G LNTYRFCDNVWTFVL DVEFREV ++ +V+K+KIVACDGK++
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGKNT 103
>sp|Q0DLD3|T2AG_ORYSJ Transcription initiation factor IIA subunit 2 OS=Oryza sativa
subsp. japonica GN=TFIIAy PE=3 SV=1
Length = 106
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Query: 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSG 61
+++LYR +T+G L E+LDE++ GT++P LA++VL+QFDKS+ AL ++VKS+++ K G
Sbjct: 3 TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK-G 61
Query: 62 KLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGK 102
L+TYRFCDNVWTF+LT+ F+ +V K+KIVACD K
Sbjct: 62 HLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK 102
>sp|A2XZI2|T2AG_ORYSI Transcription initiation factor IIA subunit 2 OS=Oryza sativa
subsp. indica GN=TFIIAy PE=3 SV=2
Length = 106
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Query: 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSG 61
+++LYR +T+G L E+LDE++ GT++P LA++VL+QFDKS+ AL ++VKS+++ K G
Sbjct: 3 TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK-G 61
Query: 62 KLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGK 102
L+TYRFCDNVWTF+LT+ F+ +V K+KIVACD K
Sbjct: 62 HLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK 102
>sp|Q39236|T2AG_ARATH Transcription initiation factor IIA subunit 2 OS=Arabidopsis
thaliana GN=TFIIA-S PE=2 SV=2
Length = 106
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Query: 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSG 61
+++LYR +T+G L E+LDE++Q GT++P LA++VL+QFDKS+ AL S+VK++++ K G
Sbjct: 3 TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK-G 61
Query: 62 KLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGK 102
L+TYRFCDNVWTF+L D F+ V+++KIVACD K
Sbjct: 62 HLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK 102
>sp|Q9NEX2|T2AG_CAEEL Transcription initiation factor IIA subunit 2 OS=Caenorhabditis
elegans GN=Y111B2A.13 PE=3 SV=2
Length = 113
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 74/102 (72%)
Query: 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSG 61
+YQLYRNTTLG LQ++LD+ + I +L+ K++ FDKSIN LP K K+++ F++
Sbjct: 5 NYQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHKAKNKVNFRAD 64
Query: 62 KLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKS 103
KL YR+CDNVWTF++ ++ R+ E V++LKIVACDG++
Sbjct: 65 KLRAYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQT 106
>sp|O74948|T2AG_SCHPO Transcription initiation factor IIA subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=toa2 PE=3 SV=2
Length = 109
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR +++G +L ++LD+LI G I+P LAMKVL FDKS+ AL KV+SRLTFK G
Sbjct: 5 YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFK-GH 63
Query: 63 LNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDGKSS 104
L+TYRFCD VWTF++ + FR E NK++IVAC + S
Sbjct: 64 LDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATRDS 105
>sp|Q9W5B9|T2AH_DROME Transcription initiation factor IIA subunit 2-2 OS=Drosophila
melanogaster GN=TfIIA-S-2 PE=3 SV=1
Length = 107
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 71/101 (70%)
Query: 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKS 60
M+YQ YR TTLG TLQ++LDE+++ G IT +A VLL++DKSI+ AL S ++F +
Sbjct: 1 MNYQHYRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKDHGTSNMSFTA 60
Query: 61 GKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACDG 101
+L T+R CDNVWT +L D EFRE +V+ +KIVAC G
Sbjct: 61 ERLETFRCCDNVWTLILKDAEFREDQHSLKVDVVKIVACLG 101
>sp|Q54ND1|T2AG_DICDI Transcription initiation factor IIA subunit 2 OS=Dictyostelium
discoideum GN=gtf2a2 PE=3 SV=1
Length = 115
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR +T+G L ++L+EL+ I+ +L K+L QFDK+IN AL + VK++ TFK G
Sbjct: 8 YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFK-GS 66
Query: 63 LNTYRFCDNVWTFVLTDVEFR-EVAEIARVNKLKIVACDGKSSD 105
L+TYRFCD+VWTF+L + +F+ E EI +V+++KIVACD D
Sbjct: 67 LHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANVQD 110
>sp|Q5BB99|T2AG_EMENI Transcription initiation factor IIA subunit 2 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=toa2 PE=3 SV=1
Length = 111
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR ++LG +L ++LD+LI G I P LAMK+L FD+ I L KV++RLTFK G
Sbjct: 7 YELYRGSSLGLSLTDTLDDLINEGRIEPQLAMKILSTFDRVITEVLADKVRTRLTFK-GH 65
Query: 63 LNTYRFCDNVWTFVLTDVEFR-EVAEIARVNKLKIVACDGK 102
L+TYRFCD VWTF++ DV F+ + + +K+KIV+C+ K
Sbjct: 66 LDTYRFCDEVWTFLIKDVNFKLDNQQTISADKVKIVSCNSK 106
>sp|C4QGM3|T2AG_SCHMA Transcription initiation factor IIA subunit 2 OS=Schistosoma
mansoni GN=Smp_071830 PE=3 SV=2
Length = 104
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
+++YR+TTLG TL+E+LDE++ + + P + KV+ +FD+ I+ AL +VK+RL+ + G
Sbjct: 4 HEMYRSTTLGTTLREALDEMLAHNLLQPGMDHKVMQKFDQCISNALAKRVKNRLSLR-GH 62
Query: 63 LNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKI 96
LNTYR CDNVWT V+ DVE ++ + I V+K+ +
Sbjct: 63 LNTYRNCDNVWTLVMNDVEIKDSSAIMTVDKVSL 96
>sp|C7ZPG2|T2AG_NECH7 Transcription initiation factor IIA subunit 2 OS=Nectria
haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596
/ MPVI) GN=toa2 PE=3 SV=1
Length = 114
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 3/105 (2%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR +++G L ++LD+LI I P LAMK+L FD++I AL VK+RL FK G
Sbjct: 9 YELYRRSSIGLALTDTLDDLISDERINPQLAMKILGNFDQAITEALQKNVKARLQFK-GS 67
Query: 63 LNTYRFCDNVWTFVLTDVEFR--EVAEIARVNKLKIVACDGKSSD 105
L+TYRFCD VWTF++ +V F+ + NK+KIV+C+ K +
Sbjct: 68 LDTYRFCDEVWTFLIKNVTFKMDTGGQAVTANKVKIVSCNAKKPE 112
>sp|Q9BIB4|YMYD_CAEEL Transcription initiation factor IIA small chain homolog
OS=Caenorhabditis elegans GN=B0336.13 PE=3 SV=1
Length = 139
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSG 61
SY LYR TTLG L ++L+++ G +T +LA KVL QFDKS+N + K ++ F +
Sbjct: 3 SYALYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQISRLPKEKMNFCAT 62
Query: 62 KLNTYRFCDNVWTFVLTDVEFREVAEI--ARVNKLKIVACDGKSS 104
+L TYR+CDNVWTF+L +V ++ ++KLK+VACDG+ +
Sbjct: 63 QLLTYRYCDNVWTFILNNVTLKDPQRSFDEPIDKLKVVACDGRQT 107
>sp|A4QW40|T2AG_MAGO7 Transcription initiation factor IIA subunit 2 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TOA2 PE=3
SV=1
Length = 116
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 3/102 (2%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR T+LG L ++LD+LI I P LAMK+L FD+ + L KVK+RL FK G
Sbjct: 10 YELYRRTSLGICLTDALDDLITNDRINPQLAMKILANFDRVVAETLQEKVKARLQFK-GA 68
Query: 63 LNTYRFCDNVWTFVLTDVEFREVA--EIARVNKLKIVACDGK 102
L+ YRFCD+VWTFV+ ++ F+ + + +K+KIV+C+ K
Sbjct: 69 LDNYRFCDDVWTFVIKNINFKLDGGNQTIQADKVKIVSCNAK 110
>sp|P0CR84|T2AG_CRYNJ Transcription initiation factor IIA subunit 2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=TOA2 PE=3 SV=1
Length = 127
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 7/112 (6%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+ R+ +G L ++LDELI G I P LAM+VL QFDKS+ L VK++ T K G
Sbjct: 11 YRGSRHVHIGTALTDALDELITQGDIPPQLAMRVLQQFDKSLTECLQKGVKNKTTIK-GH 69
Query: 63 LNTYRFCDNVWTFVLTDVEFR-----EVAEIARVNKLKIVAC-DGKSSDDRK 108
L+TYR CD+VWTFV+ D +F+ +E+ +K+KIVAC G ++D +K
Sbjct: 70 LSTYRLCDDVWTFVVKDPQFKMEGVGAGSEMVTGSKIKIVACKSGDAADGKK 121
>sp|P0CR85|T2AG_CRYNB Transcription initiation factor IIA subunit 2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=TOA2 PE=3 SV=1
Length = 127
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 7/112 (6%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+ R+ +G L ++LDELI G I P LAM+VL QFDKS+ L VK++ T K G
Sbjct: 11 YRGSRHVHIGTALTDALDELITQGDIPPQLAMRVLQQFDKSLTECLQKGVKNKTTIK-GH 69
Query: 63 LNTYRFCDNVWTFVLTDVEFR-----EVAEIARVNKLKIVAC-DGKSSDDRK 108
L+TYR CD+VWTFV+ D +F+ +E+ +K+KIVAC G ++D +K
Sbjct: 70 LSTYRLCDDVWTFVVKDPQFKMEGVGAGSEMVTGSKIKIVACKSGDAADGKK 121
>sp|P32774|T2AG_YEAST Transcription initiation factor IIA subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TOA2 PE=1
SV=1
Length = 122
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 15/117 (12%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR +T+GN+L ++LD LI G I +LAM+VL FDK + L +S+LT K G
Sbjct: 7 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GN 65
Query: 63 LNTYRFCDNVWTFVLTDVE------FREVAE--------IARVNKLKIVACDGKSSD 105
L+TY FCD+VWTF++ + + R+ ++ + V+KL+IVAC+ K S+
Sbjct: 66 LDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSKKSE 122
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 50 SKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVA----EIARVNKLKIVACDG 101
S+ R+ F+ +++ R + L++ F EV IARVNKLK+ AC G
Sbjct: 340 SESVGRVNFQRLEVDYERMLRKYYDLSLSEFNFSEVVYEFLRIARVNKLKVPACLG 395
>sp|Q84TH9|NLP7_ARATH Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2
Length = 959
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 48 LPSKVKSRLTFKSGKLN-TYRFCDNVWTFVLTDVEFREVAEIARVNKLKIV 97
L +V RL +G + Y DN W + D + +E EI R ++ KIV
Sbjct: 888 LKDEVAKRLKVDAGTFDIKYLDDDNEWVLIACDADLQECLEIPRSSRTKIV 938
>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2
PE=2 SV=2
Length = 440
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 13 NTLQESLDEL-IQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFK-SGKLNTYRFCD 70
+TL E + EL I I +++ ++ + N ALP + +R F S NT+R C
Sbjct: 251 STLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCT 310
Query: 71 NVWTFVLTDVEF 82
N +F + ++ F
Sbjct: 311 NPHSFDVDNIRF 322
>sp|Q12UQ0|RL11_METBU 50S ribosomal protein L11P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl11p PE=3 SV=1
Length = 161
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 32 LAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVAEIARV 91
+ +KV++ DKS+ + + S L K +LN + T V+ ++E +VA+IAR+
Sbjct: 50 VPVKVIVNDDKSVEIEVGTPPTSALILK--ELNIEKGSGESGTVVVGNLEIAQVAKIARM 107
Query: 92 NK 93
K
Sbjct: 108 KK 109
>sp|Q9BXU7|UBP26_HUMAN Ubiquitin carboxyl-terminal hydrolase 26 OS=Homo sapiens GN=USP26
PE=1 SV=1
Length = 913
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 47 ALPSKVKSRLT--FKSGKLNTYRFCDNVWTFVL 77
A+ K K RL FKSGK +T+R DN+ VL
Sbjct: 29 AVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVL 61
>sp|P56203|CATW_MOUSE Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=2
Length = 371
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 9 TTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSR 55
T L N Q L +G IT T+ MK+L + K + A PS R
Sbjct: 239 TMLSNNEQAIAHYLAVHGPITVTINMKLLQHYQKGVIKATPSSCDPR 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,893,561
Number of Sequences: 539616
Number of extensions: 1170373
Number of successful extensions: 2855
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2801
Number of HSP's gapped (non-prelim): 40
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)