Query psy7895
Match_columns 108
No_of_seqs 102 out of 163
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:35:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nvp_D Transcription initiatio 100.0 9.8E-55 3.4E-59 303.3 11.9 104 2-106 1-104 (108)
2 1nh2_D Transcription initiatio 100.0 4.7E-53 1.6E-57 299.7 12.7 103 1-104 4-120 (121)
3 2o97_B NS1, HU-1, DNA-binding 59.2 22 0.00076 22.1 5.1 35 16-50 4-38 (90)
4 1mul_A NS2, HU-2, DNA binding 57.3 20 0.00068 22.3 4.6 41 17-59 5-45 (90)
5 1fsh_A Dishevelled-1; three-he 52.3 17 0.00059 23.8 3.8 59 4-70 45-105 (105)
6 1p71_A DNA-binding protein HU; 51.8 20 0.00067 22.6 3.9 41 17-59 5-45 (94)
7 1b8z_A Protein (histonelike pr 51.5 20 0.0007 22.2 3.9 41 17-59 5-45 (90)
8 3fxd_A Protein ICMQ; helix bun 49.3 20 0.00068 21.8 3.4 19 27-45 4-22 (57)
9 1owf_B IHF-beta, integration H 49.2 31 0.0011 21.5 4.6 34 17-50 5-39 (94)
10 2ysr_A DEP domain-containing p 47.9 27 0.00092 22.8 4.2 62 4-69 35-104 (105)
11 2xf7_A GP23.1; viral protein; 47.6 5.3 0.00018 23.6 0.6 28 11-38 16-43 (51)
12 3c4i_A DNA-binding protein HU 47.3 25 0.00086 22.4 3.9 39 19-59 7-45 (99)
13 1owf_A IHF-alpha, integration 47.2 26 0.00087 22.3 4.0 34 17-50 7-40 (99)
14 4fmr_A Uncharacterized hypothe 45.5 32 0.0011 26.3 4.9 37 14-50 34-71 (265)
15 1bdg_A Hexokinase; phosphotran 45.5 28 0.00097 28.1 4.8 38 13-50 6-43 (451)
16 3rhi_A DNA-binding protein HU; 45.4 26 0.0009 22.0 3.8 34 17-50 8-41 (93)
17 1bh9_B TAFII28; histone fold, 45.3 28 0.00097 22.4 3.9 33 3-35 9-41 (89)
18 2np2_A HBB; protein-DNA comple 45.0 47 0.0016 21.4 5.1 35 16-50 12-51 (108)
19 3o18_A C-phycocyanin alpha sub 44.5 52 0.0018 23.1 5.6 43 4-46 117-160 (162)
20 1v3f_A Pleckstrin 2; three-hel 41.7 41 0.0014 22.5 4.5 62 4-71 32-105 (120)
21 2iie_A Integration HOST factor 39.5 14 0.00049 26.9 2.0 33 18-50 52-84 (204)
22 2p1h_A APAF-1, apoptotic prote 38.2 26 0.0009 21.7 2.9 26 14-39 23-48 (94)
23 2p12_A Hypothetical protein DU 36.6 66 0.0022 23.3 5.1 31 17-47 123-153 (176)
24 3ygs_P Procaspase 9; apoptosis 35.3 29 0.00099 22.1 2.8 24 15-38 23-46 (97)
25 3f9m_A Glucokinase; hexokinase 32.9 71 0.0024 26.3 5.3 40 12-51 14-53 (470)
26 1s69_A Cyanoglobin, hemoglobin 31.4 85 0.0029 20.1 4.7 28 11-42 87-114 (124)
27 2j96_A Phycoerythrocyanin alph 30.5 1.2E+02 0.004 21.2 5.5 43 4-46 117-160 (162)
28 1exe_A Transcription factor 1; 28.2 31 0.0011 21.9 2.0 30 21-50 9-38 (99)
29 3jv1_A P22 protein; MAM33 fami 27.6 77 0.0026 22.4 4.2 31 9-39 131-161 (182)
30 4a94_C Carboxypeptidase inhibi 27.3 20 0.00067 21.0 0.8 8 69-76 38-45 (53)
31 2vml_A Phycocyanin alpha chain 27.3 80 0.0027 22.1 4.2 43 4-46 115-160 (162)
32 3ml6_A Chimeric complex betwee 27.0 49 0.0017 26.2 3.3 60 4-71 33-94 (385)
33 4e9m_A Nucleotide-binding olig 25.9 15 0.00052 26.1 0.1 27 15-41 43-69 (144)
34 2pa8_L DNA-directed RNA polyme 25.6 1.1E+02 0.0037 19.5 4.3 28 10-44 64-91 (92)
35 2hzm_A RNA polymerase II media 25.2 68 0.0023 24.1 3.6 44 37-83 103-147 (212)
36 1kn1_A Allophycocyanin; helix- 25.0 1.1E+02 0.0037 21.4 4.5 43 4-46 113-158 (160)
37 1jf3_A Monomer hemoglobin comp 24.2 1.5E+02 0.0051 19.2 5.2 39 10-50 105-143 (147)
38 2e7g_A Putative ribosome-bindi 24.2 79 0.0027 21.2 3.5 29 5-33 12-40 (129)
39 3q23_A Virion RNA polymerase; 23.9 61 0.0021 29.6 3.6 68 9-80 815-897 (1118)
40 3hlz_A Uncharacterized protein 23.1 65 0.0022 24.9 3.2 37 16-53 180-216 (269)
41 1p32_A Mitochondrial matrix pr 22.8 51 0.0017 23.8 2.5 31 9-39 156-186 (209)
42 3crd_A Raidd; caspase recruitm 22.7 50 0.0017 20.9 2.2 21 18-38 26-46 (100)
43 4b4y_A Neuroglobin; transport 22.5 1.6E+02 0.0054 19.5 4.9 38 10-48 115-152 (154)
44 1xpp_A TA1416, DNA-directed RN 22.3 1.5E+02 0.005 19.8 4.6 29 11-46 74-102 (115)
45 3hzs_A Monofunctional glycosyl 22.2 79 0.0027 23.3 3.5 23 17-39 185-207 (209)
46 2kwp_A Transcription elongatio 21.9 1.6E+02 0.0056 19.7 4.8 52 14-68 4-61 (129)
47 1yqf_A Hypothetical protein LM 21.7 89 0.003 22.5 3.6 31 9-39 152-182 (203)
48 1cza_N Hexokinase type I; stru 21.1 1.3E+02 0.0045 26.4 5.2 35 17-51 468-502 (917)
49 2bmm_A Thermostable hemoglobin 21.1 1.7E+02 0.0057 18.6 4.8 28 11-42 86-113 (123)
50 3kyl_A Telomerase reverse tran 20.8 73 0.0025 27.3 3.3 41 25-76 309-349 (596)
51 1cg5_B Protein (hemoglobin); o 20.7 1.9E+02 0.0065 19.1 5.2 39 10-50 100-138 (141)
52 3lrd_A Major ampullate spidroi 20.5 2.2E+02 0.0076 19.7 6.8 46 4-49 37-82 (137)
53 3dm5_A SRP54, signal recogniti 20.5 2.1E+02 0.007 23.1 5.9 34 10-43 5-38 (443)
54 1tu9_A Hypothetical protein PA 20.5 1.8E+02 0.006 18.6 5.9 38 10-50 93-130 (134)
55 3kat_A Nacht, LRR and PYD doma 20.4 70 0.0024 21.2 2.6 25 14-39 35-59 (107)
56 3nme_A Ptpkis1 protein, SEX4 g 20.2 73 0.0025 23.9 3.0 33 9-41 130-162 (294)
57 3vmt_A Monofunctional glycosyl 20.1 90 0.0031 23.9 3.5 24 16-39 237-260 (263)
No 1
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=100.00 E-value=9.8e-55 Score=303.26 Aligned_cols=104 Identities=71% Similarity=1.169 Sum_probs=96.5
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEeccccceeeeeCcEEEEEEcCeE
Q psy7895 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVE 81 (108)
Q Consensus 2 ~y~lYR~stlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K~G~L~tYr~cDnVWtF~lkd~~ 81 (108)
||||||+|+||.||+||||||+++|.|+|+||++||++||++|+++|+++|++|++|| |+|++||||||||||+++||+
T Consensus 1 ~y~lYR~stiG~aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfK-G~L~tYrfcDnVWTf~lkd~~ 79 (108)
T 1nvp_D 1 AYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR-GSLNTYRFCDNVWTFVLNDVE 79 (108)
T ss_dssp -CGGGGSSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHTCCCEEEEE-EEEEEEEEETTEEEEEEEEEE
T ss_pred ChhHHhhChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEe-eccCCccccCcEEEEEEeceE
Confidence 6999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EEecceEeecCcEEEEEecCCCCCC
Q psy7895 82 FREVAEIARVNKLKIVACDGKSSDD 106 (108)
Q Consensus 82 f~~~~~~~~~~~lKIVAcd~~~~~~ 106 (108)
|+++++.+++|+|||||||++.+++
T Consensus 80 fk~~~~~~~~d~vKIVAC~~~~~~~ 104 (108)
T 1nvp_D 80 FREVTELIKVDKVKIVACDGKNTGS 104 (108)
T ss_dssp EECSSCEEEEEEEEEEEEC------
T ss_pred EEeccceeecCeEEEEEeCCCCCCC
Confidence 9999999999999999999998765
No 2
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=100.00 E-value=4.7e-53 Score=299.67 Aligned_cols=103 Identities=46% Similarity=0.824 Sum_probs=100.2
Q ss_pred ChhHHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEeccccceeeeeCcEEEEEEcCe
Q psy7895 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTYRFCDNVWTFVLTDV 80 (108)
Q Consensus 1 m~y~lYR~stlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K~G~L~tYr~cDnVWtF~lkd~ 80 (108)
|+|+|||+|+||.||++|||||+++|.|+|+||++||++||++|+++|+++|++|++|| |+|++||||||||||+++||
T Consensus 4 ~~y~lYR~StiG~aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfK-G~L~tYrfcDnVWtfilkd~ 82 (121)
T 1nh2_D 4 GYYELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GNLDTYGFCDDVWTFIVKNC 82 (121)
T ss_dssp CCCCGGGGSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCCCEEEEE-EEEEEEEEETTEEEEEEEEE
T ss_pred chHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEE-eeeccccccCcEEEEEEece
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEec--------------ceEeecCcEEEEEecCCCC
Q psy7895 81 EFREV--------------AEIARVNKLKIVACDGKSS 104 (108)
Q Consensus 81 ~f~~~--------------~~~~~~~~lKIVAcd~~~~ 104 (108)
+|+++ ++.+++|+|||||||++.+
T Consensus 83 ~fk~~~~~~~~~~~~~~~~~~~~~vdkvKIVAC~~k~~ 120 (121)
T 1nh2_D 83 QVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSKKS 120 (121)
T ss_dssp EEEEEC-------------CEEEEEEEEEEEEEESSCC
T ss_pred EEEeccccccccccccccCCceeecceEEEEEeCCCCC
Confidence 99988 4689999999999999975
No 3
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=59.22 E-value=22 Score=22.14 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 16 QESLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 16 ~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
.|..+++-+...+|+..+..+++.|-..|.++|.+
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~ 38 (90)
T 2o97_B 4 SQLIDKIAAGADISKAAAGRALDAIIASVTESLKE 38 (90)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 34455566677899999999999999999999976
No 4
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=57.33 E-value=20 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEe
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFK 59 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K 59 (108)
|..+++-+...+|+..+..+++.|-..|.++|.+ ..++.+.
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~--g~~V~l~ 45 (90)
T 1mul_A 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKE--GDAVQLV 45 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT--TCCEEET
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC--CCeEEEc
Confidence 4445555566799999999999999999999977 2344444
No 5
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=52.30 E-value=17 Score=23.77 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHhhchhccCceeEeccccceeeeeC
Q psy7895 4 QLYRNTTLGNTLQESLDELIQY--GTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTYRFCD 70 (108)
Q Consensus 4 ~lYR~stlG~aL~dtLdeli~~--~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K~G~L~tYr~cD 70 (108)
..|+++-+|..|.+=| ++. +..+.+.|..+.+. -+.+-+-.+|.++..|++|.+ |+|-|
T Consensus 45 ~~~~~~F~G~dlVdWL---~~~~~~~~~r~eAv~lg~~---Ll~~G~I~hv~~~~~F~D~~~--y~f~~ 105 (105)
T 1fsh_A 45 ITIANAVIGADVVDWL---YTHVEGFKERREARKYASS---MLKHGFLRHTVNKITFSEQCY--YVFGD 105 (105)
T ss_dssp EEESSCCHHHHHHHHH---HHHCCCCSSHHHHHHHHHH---HHHTTTEECSSSSCCCCSSSC--CEECC
T ss_pred EECCceeEcHHHHHHH---HHhCcCCCCHHHHHHHHHH---HHHCCcEEEcCCCCcccCCCe--eecCC
Confidence 3688899998776555 444 45899999988775 355666667888999996543 88755
No 6
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=51.81 E-value=20 Score=22.57 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEe
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFK 59 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K 59 (108)
|..+++-+...+|+..+..+++.|-..|.++|.+- .++.+.
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 45 (94)
T 1p71_A 5 ELVDAVAEKASVTKKQADAVLTAALETIIEAVSSG--DKVTLV 45 (94)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC--CeEEec
Confidence 33444444556899999999999999999999762 344444
No 7
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=51.48 E-value=20 Score=22.21 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEe
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFK 59 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K 59 (108)
|..+++-+...+|+..+..+++.|-..|.++|.+- .++.+.
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 45 (90)
T 1b8z_A 5 ELIDRVAKKAGAKKKDVKLILDTILETITEALAKG--EKVQIV 45 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC--CEEEEC
Confidence 33444444556999999999999999999999772 344444
No 8
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=49.29 E-value=20 Score=21.78 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy7895 27 TITPTLAMKVLLQFDKSIN 45 (108)
Q Consensus 27 ~Is~~la~kVl~~FDk~i~ 45 (108)
.+|++++..||.-.|.+|.
T Consensus 4 ~lt~eq~~aILkaLdeaIe 22 (57)
T 3fxd_A 4 QLSDEQKETILKALNDAIE 22 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4556666666665555554
No 9
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=49.21 E-value=31 Score=21.54 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 17 ESLDELIQY-GTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 17 dtLdeli~~-~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
|..+++-+. ..+|+..+..+++.|-..|.++|.+
T Consensus 5 eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L~~ 39 (94)
T 1owf_B 5 ELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQ 39 (94)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 444455555 4799999999999999999999977
No 10
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.86 E-value=27 Score=22.84 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=45.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHhhchhccCce---eEeccccceeeee
Q psy7895 4 QLYRNTTLGNTLQESLDELIQ-----YGTITPTLAMKVLLQFDKSINGALPSKVKSRL---TFKSGKLNTYRFC 69 (108)
Q Consensus 4 ~lYR~stlG~aL~dtLdeli~-----~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~---~~K~G~L~tYr~c 69 (108)
..|+++-+|..+.|=|-+.+. ...+|.+.|.++.+.+ |.+-+-.+|..+. .|+++. .-|||.
T Consensus 35 k~y~~CF~GsE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~L---l~~gvi~hV~~~~~~~~F~D~~-~lYrF~ 104 (105)
T 2ysr_A 35 KKYGNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKF---LKNHVIEDIKGRWGSENVDDNN-QLFRFP 104 (105)
T ss_dssp SSCSSCEEHHHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHH---HHTTSSEESSCCCSCSCCCSSS-CEEECC
T ss_pred EECCccccchHHHHHHHHhcccccccCccCCHHHHHHHHHHH---HHCCCeEeccCccCcccccCCC-eeEEec
Confidence 468999999999988877654 3378999999888765 4455556676654 788554 778874
No 11
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=47.60 E-value=5.3 Score=23.56 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q psy7895 11 LGNTLQESLDELIQYGTITPTLAMKVLL 38 (108)
Q Consensus 11 lG~aL~dtLdeli~~~~Is~~la~kVl~ 38 (108)
=|.++++-|.--++.|.|+.+-+.+|++
T Consensus 16 ~GT~~~~~mR~AV~~G~iTQ~E~D~I~~ 43 (51)
T 2xf7_A 16 DGTASEELLRVAVNAGDLTQEEADKIMS 43 (51)
T ss_dssp HTCCCHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred cchhhHHHHHHHHhcCcccHHHHHHHHh
Confidence 3677888888899999999998888864
No 12
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=47.25 E-value=25 Score=22.36 Aligned_cols=39 Identities=18% Similarity=0.076 Sum_probs=29.0
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEe
Q psy7895 19 LDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFK 59 (108)
Q Consensus 19 Ldeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K 59 (108)
.+++-+...+++..+..+++.|-..|.++|.+ ..++.+.
T Consensus 7 i~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~~--g~~V~l~ 45 (99)
T 3c4i_A 7 IDVLTQKLGSDRRQATAAVENVVDTIVRAVHK--GDSVTIT 45 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT--TCCEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEC
Confidence 33444445699999999999999999999976 2344444
No 13
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=47.16 E-value=26 Score=22.27 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
+..+++-+...+|+..+..+++.|-..|.++|.+
T Consensus 7 eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L~~ 40 (99)
T 1owf_A 7 EMSEYLFDKLGLSKRDAKELVELFFEEIRRALEN 40 (99)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4444455556799999999999999999999977
No 14
>4fmr_A Uncharacterized hypothetical protein; bacterial DNA binding protein, DUF4469 with IG-like fold, ST genomics; HET: MSE; 2.25A {Bacteroides vulgatus}
Probab=45.52 E-value=32 Score=26.27 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 14 TLQESLDELIQYG-TITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 14 aL~dtLdeli~~~-~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
.+.+.++++..++ .+++.-...||..|.++|.+.|.+
T Consensus 34 t~~dIa~~ia~~~S~ls~~di~~vl~~l~~~~~e~L~~ 71 (265)
T 4fmr_A 34 DKEIILDRMVAKNPGVRRETMALGIELMEEVVAEALMN 71 (265)
T ss_dssp CHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4678889998765 599999999999999999999987
No 15
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=45.45 E-value=28 Score=28.09 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 13 NTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 13 ~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
..|.+.++++.+.-.++.+.-.+|...|-..|.+-|++
T Consensus 6 ~~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~ 43 (451)
T 1bdg_A 6 QQLFEKVVEILKPFDLSVVDYEEICDRMGESMRLGLQK 43 (451)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 45778899999999999999999999999999999985
No 16
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=45.37 E-value=26 Score=22.01 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
|.++++-+...+++..+..+++.|-..|.++|.+
T Consensus 8 eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~ 41 (93)
T 3rhi_A 8 ELIKNVAQNAEISQKEATVVVQTVVESITNTLAA 41 (93)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444455789999999999999999999976
No 17
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=45.28 E-value=28 Score=22.42 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=24.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHH
Q psy7895 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMK 35 (108)
Q Consensus 3 y~lYR~stlG~aL~dtLdeli~~~~Is~~la~k 35 (108)
|+.||+|++=.+=..=|-.-+.++.++++.+.-
T Consensus 9 ye~~Rrs~f~k~~vKrl~~~~~~~~v~~~v~i~ 41 (89)
T 1bh9_B 9 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIA 41 (89)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHcCCCCCccHHHH
Confidence 899999987655555455555688888877664
No 18
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=44.96 E-value=47 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 16 QESLDELI-----QYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 16 ~dtLdeli-----~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
.|..+++- +...+++..+..+++.|-..|.++|.+
T Consensus 12 ~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~L~~ 51 (108)
T 2np2_A 12 SDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCS 51 (108)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 45555555 567899999999999999999999977
No 19
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=44.48 E-value=52 Score=23.14 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=33.3
Q ss_pred HHHHhhh-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q psy7895 4 QLYRNTT-LGNTLQESLDELIQYGTITPTLAMKVLLQFDKSING 46 (108)
Q Consensus 4 ~lYR~st-lG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~ 46 (108)
|+||.-- =+.+..++|..|-..+.++|+.+..+-.=||..|+.
T Consensus 117 e~y~algvp~~~~v~al~~mk~~~~ls~e~~~~~~~yfD~~i~~ 160 (162)
T 3o18_A 117 EINSTFDLSPSWYIEALKYIKANHGLTGQAAVEANAYIDYAINA 160 (162)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 5677632 234666777777777999999999999999998875
No 20
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=41.72 E-value=41 Score=22.48 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=43.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHhhchhcc-----------CceeEeccccceeeeeCc
Q psy7895 4 QLYRNTTLGNTLQESLDELIQYG-TITPTLAMKVLLQFDKSINGALPSKVK-----------SRLTFKSGKLNTYRFCDN 71 (108)
Q Consensus 4 ~lYR~stlG~aL~dtLdeli~~~-~Is~~la~kVl~~FDk~i~~~L~~~vk-----------sk~~~K~G~L~tYr~cDn 71 (108)
..|+++-+|..|.|=| ++.+ ..+.+.|..+.+.+ +.+-+-.+|. .+..|+.+.-.-|||.|.
T Consensus 32 k~y~~cF~GsdlVdWL---~~~~~~~sR~eAv~lgq~L---l~~G~i~hV~~~s~~~~~~~~~~~~f~d~~~~lYrF~~~ 105 (120)
T 1v3f_A 32 STYKKTFLGSSLVDWL---ISSNFAASRLEAVTLASML---MEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAES 105 (120)
T ss_dssp SCCSSCEEHHHHHHHH---HHTTSCSSHHHHHHHHHHH---HHHTSEEECSSSSCSSCCCSSCCCCCCCSSSCEEEECSS
T ss_pred EEccceeehHHHHHHH---HHcCCCCCHHHHHHHHHHH---HHCCCeEEccccccccccccccccceecCCccEEEeChh
Confidence 3578888998777754 4455 46888998888776 6666666676 566777444357888776
No 21
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=39.52 E-value=14 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 18 SLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 18 tLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
..+.+-+...+|+..+..+++.|-..|.++|.+
T Consensus 52 Li~~ia~~~~lsk~da~~vl~~l~~~i~~~L~~ 84 (204)
T 2iie_A 52 MSEYLFDKLGLSKRDAKELVELFFEEIRRALEN 84 (204)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 334444456789999999999999999999976
No 22
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=38.22 E-value=26 Score=21.69 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Q psy7895 14 TLQESLDELIQYGTITPTLAMKVLLQ 39 (108)
Q Consensus 14 aL~dtLdeli~~~~Is~~la~kVl~~ 39 (108)
.....||.|++.|.||++..+.|...
T Consensus 23 ~v~~lld~L~~~~vlt~~~~e~I~~~ 48 (94)
T 2p1h_A 23 KTSYIMDHMISDGFLTISEEEKVRNE 48 (94)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHTS
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHcC
Confidence 35689999999999999999999874
No 23
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genom 2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=36.62 E-value=66 Score=23.32 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQFDKSINGA 47 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~FDk~i~~~ 47 (108)
|=|++-.+.|.||++++.+.+....+++...
T Consensus 123 DEL~~A~~~GlIs~e~ae~Alr~a~~~v~~i 153 (176)
T 2p12_A 123 DELMEAHTTGLLDTATAEQAILTATTAIDGI 153 (176)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4566777899999999999999998888765
No 24
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.35 E-value=29 Score=22.06 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH
Q psy7895 15 LQESLDELIQYGTITPTLAMKVLL 38 (108)
Q Consensus 15 L~dtLdeli~~~~Is~~la~kVl~ 38 (108)
..+.+|+|++.|.||++..+.|..
T Consensus 23 ~~~vld~L~~~~vlt~~~~e~I~~ 46 (97)
T 3ygs_P 23 VDQLWDVLLSRELFRPHMIEDIQR 46 (97)
T ss_dssp CTTTHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHh
Confidence 345899999999999999999995
No 25
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=32.86 E-value=71 Score=26.27 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchh
Q psy7895 12 GNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSK 51 (108)
Q Consensus 12 G~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~ 51 (108)
-..|.+.++++++.-.++++.-.+|...|-..|.+-|++.
T Consensus 14 ~~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~GL~~~ 53 (470)
T 3f9m_A 14 QGMKKEKVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLE 53 (470)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4567888888999999999999999999999999999865
No 26
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=31.36 E-value=85 Score=20.06 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q psy7895 11 LGNTLQESLDELIQYGTITPTLAMKVLLQFDK 42 (108)
Q Consensus 11 lG~aL~dtLdeli~~~~Is~~la~kVl~~FDk 42 (108)
.+..|.+||+|+ | ++|++...++..|..
T Consensus 87 wl~~l~~al~e~---~-~~~~~~~~~~~~~~~ 114 (124)
T 1s69_A 87 VAEDLLATLKEM---G-VPEDLIAEVAAVAGA 114 (124)
T ss_dssp HHHHHHHHHHHH---T-CCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc---C-CCHHHHHHHHHHHHh
Confidence 455666666665 1 666666666655543
No 27
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=30.49 E-value=1.2e+02 Score=21.25 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=30.7
Q ss_pred HHHHhh-hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q psy7895 4 QLYRNT-TLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSING 46 (108)
Q Consensus 4 ~lYR~s-tlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~ 46 (108)
++||.- .=+.+-..++..|-....++++.+..|-.-||..|+.
T Consensus 117 eiy~algvp~~~~~~a~~~mk~~~~l~~e~~~ei~~yfD~~i~~ 160 (162)
T 2j96_A 117 EFNSALGLSPSWYIAALEFVRDNHGLTGDVAGEANTYINYAINA 160 (162)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 456642 2223344567666667789999999999999999875
No 28
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=28.18 E-value=31 Score=21.94 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 21 ELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 21 eli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
++-+...+|+..+..+++.|-..|.++|.+
T Consensus 9 ~ia~~~~lsk~~~~~~l~~~~~~i~~~L~~ 38 (99)
T 1exe_A 9 AIAQDTGLTQVSVSKMLASFEKIITETVAK 38 (99)
T ss_dssp HHHHHHCSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 333445689999999999999999999987
No 29
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=27.57 E-value=77 Score=22.45 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q psy7895 9 TTLGNTLQESLDELIQYGTITPTLAMKVLLQ 39 (108)
Q Consensus 9 stlG~aL~dtLdeli~~~~Is~~la~kVl~~ 39 (108)
..|-..|+++|.+++++.=|++++|..|..-
T Consensus 131 ~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y 161 (182)
T 3jv1_A 131 ADLEDHLVDSFTSYLSARGVNDTLANFIDQF 161 (182)
T ss_dssp GGSCHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4577899999999999999999999988653
No 30
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=27.29 E-value=20 Score=20.99 Aligned_cols=8 Identities=63% Similarity=1.614 Sum_probs=6.8
Q ss_pred eCcEEEEE
Q psy7895 69 CDNVWTFV 76 (108)
Q Consensus 69 cDnVWtF~ 76 (108)
|..||||-
T Consensus 38 cqhvwtfe 45 (53)
T 4a94_C 38 CQHVWTFE 45 (53)
T ss_dssp EEEEEEET
T ss_pred eeEEEEEC
Confidence 88999983
No 31
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=27.25 E-value=80 Score=22.08 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=29.0
Q ss_pred HHHHhh-hHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Q psy7895 4 QLYRNT-TLGNTLQESLDELIQ--YGTITPTLAMKVLLQFDKSING 46 (108)
Q Consensus 4 ~lYR~s-tlG~aL~dtLdeli~--~~~Is~~la~kVl~~FDk~i~~ 46 (108)
++||.- .=+.+...++..|-. ...++++.+..|-.-||..|+.
T Consensus 115 eiy~algvp~~~~~~a~~~mk~~~~~~l~~~~~~~i~~yfd~~i~~ 160 (162)
T 2vml_A 115 EVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINA 160 (162)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 567662 222333455555555 5578999999999999999875
No 32
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=26.97 E-value=49 Score=26.23 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=42.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHhhchhccCceeEeccccceeeeeCc
Q psy7895 4 QLYRNTTLGNTLQESLDELIQY--GTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTYRFCDN 71 (108)
Q Consensus 4 ~lYR~stlG~aL~dtLdeli~~--~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K~G~L~tYr~cDn 71 (108)
..|+++-+|..|. |=|++. +..+.+.|..+.+ .-+.+-+-.+|.++..|++|. .|+|.|.
T Consensus 33 ~~~~~~F~G~elV---dWL~~~~~~~~~R~eA~~~g~---~Ll~~G~i~hv~~~~~F~d~~--~y~f~~~ 94 (385)
T 3ml6_A 33 ITIPNAFLGSDVV---DWLYHHVEGFPERREARKYAS---GLLKAGLIRHTVNKITFSEQC--YYVFGDL 94 (385)
T ss_dssp CCEEEEEEHHHHH---HHHHHTCCSCSSHHHHHHHHH---HHHHHSSEEESSSCSSCCSSS--EEEECCC
T ss_pred EECCCeEEhHHHH---HHHHHccCCCCCHHHHHHHHH---HHHhCCcEEEcCCcceecCcc--eEEeecc
Confidence 4578888997554 555666 3578888887764 445666777899999999665 4887774
No 33
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=25.88 E-value=15 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.006 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q psy7895 15 LQESLDELIQYGTITPTLAMKVLLQFD 41 (108)
Q Consensus 15 L~dtLdeli~~~~Is~~la~kVl~~FD 41 (108)
....||.|...|.|+.+-++.|...+.
T Consensus 43 v~~LLD~LL~~gvLs~EE~EiV~~~~T 69 (144)
T 4e9m_A 43 TQCLVDNLLKNDYFSAEDAEIVCACPT 69 (144)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHTSSS
T ss_pred hHHHHHHHHHcCCCCHHHHHHHhccCC
Confidence 467899999999999999988876543
No 34
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=25.64 E-value=1.1e+02 Score=19.47 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q psy7895 10 TLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSI 44 (108)
Q Consensus 10 tlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i 44 (108)
+--.+|.+++++++. ....+.++|++++
T Consensus 64 ~p~~al~~a~~~l~~-------~~~~~~~~f~~~~ 91 (92)
T 2pa8_L 64 TPKDALLKAIENIRG-------MTSHYIDEIKGLT 91 (92)
T ss_dssp CHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 445789999999976 5677777787754
No 35
>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 3rj1_F 2hzs_A
Probab=25.24 E-value=68 Score=24.06 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhchhccCceeEecccc-ceeeeeCcEEEEEEcCeEEE
Q psy7895 37 LLQFDKSINGALPSKVKSRLTFKSGKL-NTYRFCDNVWTFVLTDVEFR 83 (108)
Q Consensus 37 l~~FDk~i~~~L~~~vksk~~~K~G~L-~tYr~cDnVWtF~lkd~~f~ 83 (108)
.+.||..|+.-|+..-..+-.+| |.- ..|+++| |+..+-|+...
T Consensus 103 ~~~FD~ll~~KL~siwtqrq~iK-ge~G~~Y~~~d--f~VR~~Nvf~~ 147 (212)
T 2hzm_A 103 PESIDTILSSKLSNIWMQRQLIK-GDAGETLILDG--LTVRLVNLFSS 147 (212)
T ss_dssp CCCHHHHHHHHSTTTEEEEEEEE-EEEEEEEEETT--EEEEEEEEEET
T ss_pred CccHHHHHHHHHHHHHhHhhccc-ccCCceeEecC--EEEEEeeEEEc
Confidence 46799999999999888888888 653 3477777 66666666554
No 36
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=24.97 E-value=1.1e+02 Score=21.41 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHh-hhHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Q psy7895 4 QLYRN-TTLGNTLQESLDELIQ--YGTITPTLAMKVLLQFDKSING 46 (108)
Q Consensus 4 ~lYR~-stlG~aL~dtLdeli~--~~~Is~~la~kVl~~FDk~i~~ 46 (108)
++||. -.=+.+...+|..|-. ...++++.+..|-.-||.+++.
T Consensus 113 eiy~algvp~~~~~~~~~~mk~~~~~~l~~~~~~~i~~yfD~~i~~ 158 (160)
T 1kn1_A 113 EMYKSLGTPISAVAEGVKCMKSVASSLLSGEDSAEAGFYFDYVVGA 158 (160)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 56666 2233444455555554 5678999999999999998874
No 37
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=24.22 E-value=1.5e+02 Score=19.16 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 10 TLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 10 tlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
.+|.+|..+|.+...+ ..||+.....-.-| ..+..+|..
T Consensus 105 ~~~~~Ll~~l~~~lg~-~~t~e~~~AW~~~~-~~v~~~l~~ 143 (147)
T 1jf3_A 105 PLGASLLSAMEHRIGG-KMNAAAKDAWAAAY-GDISGALIS 143 (147)
T ss_dssp HHHHHHHHHHHHHHGG-GSCHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-cCCHHHHHHHHHHH-HHHHHHHHh
Confidence 4899999999998763 57887765433333 345555544
No 38
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=24.18 E-value=79 Score=21.16 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHCCCCCHHHH
Q psy7895 5 LYRNTTLGNTLQESLDELIQYGTITPTLA 33 (108)
Q Consensus 5 lYR~stlG~aL~dtLdeli~~~~Is~~la 33 (108)
-+|..-+|..++..|.++++.+.+.|.+.
T Consensus 12 s~R~~Rv~~~i~~~ls~il~~~~~dp~l~ 40 (129)
T 2e7g_A 12 HARLRALNGLLYKALTDLLCTPEVSQELY 40 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCcccc
Confidence 36778899999999999999988888875
No 39
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=23.90 E-value=61 Score=29.64 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEeccc-------------cceee--eeCcEE
Q psy7895 9 TTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK-------------LNTYR--FCDNVW 73 (108)
Q Consensus 9 stlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K~G~-------------L~tYr--~cDnVW 73 (108)
-|+|.+|+.+=.+|+- .|.=+..-+...||+.+.+.++++.+.+..=| |. |..|- |.-++.
T Consensus 815 ~TvG~~L~~atEql~~---aTniQ~~~~q~~f~~~v~ek~ae~~~~~t~kk-~e~Lsqk~~~~I~~eLs~laPi~~s~sQ 890 (1118)
T 3q23_A 815 QTVGESLVYSTEQLQK---ATQIQSVVLEDMFKQRVQEKLAEKAKDPTWKK-GDFLTQKELNDIQASLNNLAPMIETGSQ 890 (1118)
T ss_dssp HHHCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCT-TCCCBHHHHHHHHHTTGGGCCCEECSSC
T ss_pred HHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccCc-cccccHHHHHHHHHHHHhcccceecCCc
Confidence 4899999999877855 45556677788999999999999877665555 43 22221 344667
Q ss_pred EEEEcCe
Q psy7895 74 TFVLTDV 80 (108)
Q Consensus 74 tF~lkd~ 80 (108)
||.+-..
T Consensus 891 t~~lgg~ 897 (1118)
T 3q23_A 891 TFYIAGS 897 (1118)
T ss_dssp EECTTEE
T ss_pred eEEeccc
Confidence 8776544
No 40
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.14 E-value=65 Score=24.91 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhcc
Q psy7895 16 QESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVK 53 (108)
Q Consensus 16 ~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vk 53 (108)
.+.|++++.+|.|+|.+.+. |+.|=.++...|.+.|.
T Consensus 180 l~~LQqViDsG~i~pkqk~a-W~A~GIa~g~ILANEv~ 216 (269)
T 3hlz_A 180 LEKIQQVIDSGKISPKKKDE-WLAIGITVCAILTNEVE 216 (269)
T ss_dssp HHHHHHHHHTTCSCTTCHHH-HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCcChHHHHH-HHHhhHHHHHHHHhhcC
Confidence 47899999999999999875 78899999999999873
No 41
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=22.78 E-value=51 Score=23.81 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q psy7895 9 TTLGNTLQESLDELIQYGTITPTLAMKVLLQ 39 (108)
Q Consensus 9 stlG~aL~dtLdeli~~~~Is~~la~kVl~~ 39 (108)
..|=..|+++|.+++.+.=|++++|..|..-
T Consensus 156 ~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y 186 (209)
T 1p32_A 156 DSLDWALYDHLMDFLADRGVDNTFADELVEL 186 (209)
T ss_dssp TTCCHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4577899999999999999999999988653
No 42
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=22.68 E-value=50 Score=20.87 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCCHHHHHHHHH
Q psy7895 18 SLDELIQYGTITPTLAMKVLL 38 (108)
Q Consensus 18 tLdeli~~~~Is~~la~kVl~ 38 (108)
.||.|++.|.||++....|..
T Consensus 26 lld~L~~~~VLt~~~~e~I~~ 46 (100)
T 3crd_A 26 VLQYLYQEGILTENHIQEINA 46 (100)
T ss_dssp SHHHHHHHTSSCHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHc
Confidence 589999999999999998876
No 43
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=22.47 E-value=1.6e+02 Score=19.47 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Q psy7895 10 TLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGAL 48 (108)
Q Consensus 10 tlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L 48 (108)
.+|.+|..+|.+......-||++... |.++=..+..+|
T Consensus 115 ~~~~~Ll~~l~~~lg~~~~t~e~~~A-W~~~~~~va~~l 152 (154)
T 4b4y_A 115 KLGGCILTQVVKRVSEAKWSEEKKEA-WLKAYGIITVMV 152 (154)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHHHHHH
Confidence 48999999999987645688876544 333333444444
No 44
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=22.27 E-value=1.5e+02 Score=19.81 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q psy7895 11 LGNTLQESLDELIQYGTITPTLAMKVLLQFDKSING 46 (108)
Q Consensus 11 lG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~ 46 (108)
--.+|.+++++|+. ....+.+.|++++.+
T Consensus 74 p~eaL~~al~~L~~-------~~~~l~~~f~~a~~~ 102 (115)
T 1xpp_A 74 PQSAIKRAVRKLSK-------LYEDLGTQFQKEFQR 102 (115)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34789999999976 667778888887653
No 45
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=22.22 E-value=79 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHH
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQ 39 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~ 39 (108)
..|+.|.+.|.||++++..-+.+
T Consensus 185 ~VL~~M~~~g~It~~e~~~A~~e 207 (209)
T 3hzs_A 185 TNLEKMKQQNYINETQYQQAMSQ 207 (209)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHh
Confidence 46999999999999988765543
No 46
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=21.91 E-value=1.6e+02 Score=19.70 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEe------ccccceeee
Q psy7895 14 TLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFK------SGKLNTYRF 68 (108)
Q Consensus 14 aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K------~G~L~tYr~ 68 (108)
-|.++|+.+-++.-|+++.....++ .|+..+.+++..+...+. -|.+..|+.
T Consensus 4 ell~~l~~l~~EKgI~~e~v~eaie---~AL~~A~kk~~g~~~~~~V~id~~tG~~~v~~~ 61 (129)
T 2kwp_A 4 EILAVVEAVSNEKALPREKIFEALE---SALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 (129)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHHHHHHCSCCCEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHH---HHHHHHHHHhcCCccceEEEEECCCCeEEEEEE
Confidence 4788999999999999998766665 577777777655544443 577888875
No 47
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=21.66 E-value=89 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q psy7895 9 TTLGNTLQESLDELIQYGTITPTLAMKVLLQ 39 (108)
Q Consensus 9 stlG~aL~dtLdeli~~~~Is~~la~kVl~~ 39 (108)
..|-..|+++|.+++++.=|++++|..|..-
T Consensus 152 ~~LDe~Lq~~l~~YLeeRGI~~~la~fl~~y 182 (203)
T 1yqf_A 152 HELDYDLLNCVMTYLEKRGVDEKLGEFVVLY 182 (203)
T ss_dssp GGSBHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4577899999999999999999999988654
No 48
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=21.12 E-value=1.3e+02 Score=26.38 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhchh
Q psy7895 17 ESLDELIQYGTITPTLAMKVLLQFDKSINGALPSK 51 (108)
Q Consensus 17 dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~~ 51 (108)
+.++++.+.-.++++.-.+|...|-+.|.+-|++.
T Consensus 468 ~~i~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~ 502 (917)
T 1cza_N 468 RQIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQ 502 (917)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHSHH
T ss_pred hhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 45688899999999999999999999999999864
No 49
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=21.10 E-value=1.7e+02 Score=18.55 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q psy7895 11 LGNTLQESLDELIQYGTITPTLAMKVLLQFDK 42 (108)
Q Consensus 11 lG~aL~dtLdeli~~~~Is~~la~kVl~~FDk 42 (108)
....|.+||+|+ + ++|+++..++..+..
T Consensus 86 wl~~~~~al~e~---~-~~~~~~~~~~~~~~~ 113 (123)
T 2bmm_A 86 WLTHMRAAVDDL---A-LPAHLEQQLWEYLVY 113 (123)
T ss_dssp HHHHHHHHHHHH---C-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---C-CCHHHHHHHHHHHHH
Confidence 456777788875 1 778888888777763
No 50
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=20.84 E-value=73 Score=27.35 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhchhccCceeEeccccceeeeeCcEEEEE
Q psy7895 25 YGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTYRFCDNVWTFV 76 (108)
Q Consensus 25 ~~~Is~~la~kVl~~FDk~i~~~L~~~vksk~~~K~G~L~tYr~cDnVWtF~ 76 (108)
.|.|||=||+-.|..+|+.+...+ . +...-.|+.||.-.+.
T Consensus 309 GGVISPLLANIYLheLDkel~~~l----------~-kd~~LVRYADDFVIi~ 349 (596)
T 3kyl_A 309 GDPLSGCLCELYMAFMDRLYFSNL----------D-KDAFIHRTVDDYFFCS 349 (596)
T ss_dssp TCTTHHHHHHHHHHHHHHHHSTTS----------C-TTSEEEECSSEEEEEE
T ss_pred CcchhHHHHHHHHHHHHHHHHHhh----------c-cCceEEEEcCcEEEEE
Confidence 347999999999999999773322 2 2335678899876553
No 51
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=20.74 E-value=1.9e+02 Score=19.07 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 10 TLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 10 tlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
.+|.+|..+|.+...+. -||+.... |.+|=..+..+|..
T Consensus 100 ~~g~~Ll~~l~~~lg~~-~t~e~~~A-W~k~~~~va~~l~~ 138 (141)
T 1cg5_B 100 LLGQTFMVELALHYKKT-FRPKEHAA-AYKFFRLVAEALSS 138 (141)
T ss_dssp HHHHHHHHHHHHHHGGG-CCHHHHHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHH-HHHHHHHHHHHHHh
Confidence 48999999999987754 88876544 44443455555543
No 52
>3lrd_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT D40N/ double-mutant, structural protein; HET: PGE; 2.15A {Euprosthenops australis} PDB: 3lr6_A* 2lpj_A 3lr2_A 2lpi_A 4fbs_A 3lr8_A*
Probab=20.55 E-value=2.2e+02 Score=19.75 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=38.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhc
Q psy7895 4 QLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALP 49 (108)
Q Consensus 4 ~lYR~stlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~ 49 (108)
|+=+-+++|.++.-++|-|..+|.+++.-..-+=.-|=-+|.+...
T Consensus 37 q~~Dm~sI~~ti~~a~d~~~~~g~ss~aklqAlnmAfASSiAeia~ 82 (137)
T 3lrd_A 37 QLDNMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAA 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999998888777778877777653
No 53
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=20.54 E-value=2.1e+02 Score=23.15 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q psy7895 10 TLGNTLQESLDELIQYGTITPTLAMKVLLQFDKS 43 (108)
Q Consensus 10 tlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~ 43 (108)
.||..|..+|..+-..+.|+++.....+++.-.+
T Consensus 5 ~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~ 38 (443)
T 3dm5_A 5 NLGKALANTLKKIARASSVDEALIKELVRDIQRA 38 (443)
T ss_dssp HHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998766555544433
No 54
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=20.49 E-value=1.8e+02 Score=18.58 Aligned_cols=38 Identities=8% Similarity=-0.142 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhch
Q psy7895 10 TLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPS 50 (108)
Q Consensus 10 tlG~aL~dtLdeli~~~~Is~~la~kVl~~FDk~i~~~L~~ 50 (108)
.+|.+|..||.+ .. ..-||++...--+-|+ .+..+|..
T Consensus 93 ~~~~~Ll~~l~~-lg-~~~t~e~~~AW~~~~~-~~a~~l~~ 130 (134)
T 1tu9_A 93 LWLDALLMAVAE-HD-RDCDAETRDAWRDVMG-RGIAVIKS 130 (134)
T ss_dssp HHHHHHHHHHHH-HC-TTCCHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHH-hc-ccCCHHHHHHHHHHHH-HHHHHHHH
Confidence 489999999999 44 4679987665444443 55555554
No 55
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=20.38 E-value=70 Score=21.16 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Q psy7895 14 TLQESLDELIQYGTITPTLAMKVLLQ 39 (108)
Q Consensus 14 aL~dtLdeli~~~~Is~~la~kVl~~ 39 (108)
.+...||+|.+ +.|+++..+.|..+
T Consensus 35 ~V~~ILD~Ll~-~VLteee~e~I~ae 59 (107)
T 3kat_A 35 SVEVVLDKLHG-QVLSQEQYERVLAE 59 (107)
T ss_dssp CHHHHHHHHTT-TTSCHHHHHHHHHC
T ss_pred hHHHHHHHHHH-hhCCHHHHHHHHhC
Confidence 56778999997 59999999998764
No 56
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=20.20 E-value=73 Score=23.92 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q psy7895 9 TTLGNTLQESLDELIQYGTITPTLAMKVLLQFD 41 (108)
Q Consensus 9 stlG~aL~dtLdeli~~~~Is~~la~kVl~~FD 41 (108)
...|.++.+|++.+-+...+.|+.......++|
T Consensus 130 ~~~g~s~~~A~~~v~~~Rp~~Pn~~~l~~~~~~ 162 (294)
T 3nme_A 130 WVQGYKLMEAHKLLMSKRSCFPKLDAIRNATID 162 (294)
T ss_dssp HTSCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhCCCCCChhhhhHHHHH
Confidence 344678899999888877777776444444544
No 57
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=20.10 E-value=90 Score=23.94 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
Q psy7895 16 QESLDELIQYGTITPTLAMKVLLQ 39 (108)
Q Consensus 16 ~dtLdeli~~~~Is~~la~kVl~~ 39 (108)
...|+.|.+.|.||++++..-+.+
T Consensus 237 ~~VL~~M~~~g~It~~e~~~A~~e 260 (263)
T 3vmt_A 237 STNLEKMKQQNYINETQYQQAMSQ 260 (263)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356999999999999998876554
Done!