RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7895
         (108 letters)



>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 51

 Score = 92.0 bits (229), Expect = 5e-27
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query: 3  YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVK 53
          YQLYRNTTLGN+LQESLDELIQ   ITP LA++VLLQFDK+IN AL  +V+
Sbjct: 1  YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVR 51


>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 50

 Score = 84.3 bits (209), Expect = 6e-24
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 3  YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGAL 48
          Y+LYR +T+GN+L ++LD LI  G I  +LAM+VL  FDK +   L
Sbjct: 3  YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETL 48


>d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 46

 Score = 83.6 bits (207), Expect = 1e-23
 Identities = 34/47 (72%), Positives = 41/47 (87%), Gaps = 1/47 (2%)

Query: 54  SRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACD 100
           +R+ F+ G LNTYRFCDNVWTFVL DVEFREV E+ +V+K+KIVACD
Sbjct: 1   NRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACD 46


>d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 67

 Score = 74.7 bits (183), Expect = 5e-20
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 15/67 (22%)

Query: 52  VKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFR--------------EVAEIARVNKLKIV 97
            +S+LT K G L+TY FCD+VWTF++ + +                +   +  V+KL+IV
Sbjct: 2   TQSKLTVK-GNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIV 60

Query: 98  ACDGKSS 104
           AC+ K S
Sbjct: 61  ACNSKKS 67


>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical
           protein TM1585) {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 25.3 bits (55), Expect = 1.9
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 18  SLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTYRFCDNVWTFVL 77
           SL+E+ +            LL+   SI   + +  K     K G+     F   V   VL
Sbjct: 134 SLEEIQKL--------TSALLKSGASIE-EINTVRKHLSQVKGGRFAERVFPAKVVALVL 184

Query: 78  TDVEFREVAEIA 89
           +DV    +  IA
Sbjct: 185 SDVLGDRLDVIA 196


>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
           (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
          Length = 458

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 1   MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVK 53
           M  +L+    +G  L +     I+Y     T AM ++          LP + +
Sbjct: 343 MDIELWNYPAIGYNLPQQKASRIRYHESLMTHAM-LITGCHVDETSKLPLRYR 394


>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit
          VIIb {Cow (Bos taurus) [TaxId: 9913]}
          Length = 49

 Score = 22.9 bits (49), Expect = 4.5
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 68 FCDNVWTFVLT 78
          FC  VW ++ T
Sbjct: 19 FCVAVWVYMAT 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,229
Number of extensions: 14789
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 7
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)