BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7896
(718 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 308 bits (789), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 168/315 (53%), Positives = 207/315 (65%), Gaps = 28/315 (8%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ADI LA WGRK + +AE EMPGL+ +R +Y AQ+ LKGARIAG LHMT+QT VLIETL
Sbjct: 37 VADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLK 96
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
LGA+V+W+SCNIFSTQDH +KGE+ +EY + +P+G+ NM
Sbjct: 97 ALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANM 156
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
ILDDGGD T L+ I G E V + P ++ K
Sbjct: 157 ILDDGGDATLLL----------ILGSKAEKDRSV-----------IARPTNEEEVALFKS 195
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
+ L+ G Y + L+ I+G++EETTTGVH LY+M K+ +L PA NVNDSV
Sbjct: 196 IERHLEIDGSW-------YSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSV 248
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
TKSKFDNLYGCRESLVDG+KRATD+M+AGK+AVVAGYGDVGKGCAQSLR G+ V VTEI
Sbjct: 249 TKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEI 308
Query: 301 DPINALQASMEGYEL 315
DPI ALQA+MEGY +
Sbjct: 309 DPICALQAAMEGYRV 323
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 91/121 (75%)
Query: 598 TDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIE 657
+ +Y W + VD P+G +ILLAEGRLVNLGCA GHPSFVMSNSFTNQ LAQIE
Sbjct: 374 STRQYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIE 433
Query: 658 LWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYR 717
L+T+ +Y VY+LPK LDE+VA LHL +G +L++L++DQA Y+G+ GP+KPDHYR
Sbjct: 434 LFTRGGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYR 493
Query: 718 Y 718
Y
Sbjct: 494 Y 494
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Query: 313 YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS 372
+ +++ V ++L L + + D+M+AGK+AVVAGYGDVGKGCAQSLR G+
Sbjct: 242 FNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGA 301
Query: 373 RVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVC 432
V VTEIDPI ALQA+MEGY V TME AA + IFVT TG +I +H MR +AIVC
Sbjct: 302 TVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVC 361
Query: 433 NIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
NIGHFD EI V+ + E N+KPQV
Sbjct: 362 NIGHFDSEIDVASTRQYQWE--NIKPQV 387
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 80/121 (66%), Gaps = 4/121 (3%)
Query: 499 HLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIET 558
++ DI LA WGRK + +AE EMPGL+ +R +Y AQ+ LKGARIAG LHMT+QT VLIET
Sbjct: 35 YVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIET 94
Query: 559 LLELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVDRYTLPN 618
L LGA+V+W+SCNIFSTQDH +KGE+ +EY W + + PN
Sbjct: 95 LKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEY-WEFSHRI---FEWPN 150
Query: 619 G 619
G
Sbjct: 151 G 151
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA LHL +G +L++L++DQA Y+ + AG
Sbjct: 452 LDEKVARLHLARIGAQLSELSDDQAAYIGVSKAG 485
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/318 (50%), Positives = 200/318 (62%), Gaps = 38/318 (11%)
Query: 3 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
DI LA+WGRK + +AE EMPGLMA R ++G + LKGARI+G LHMT+QTAVLIETL L
Sbjct: 9 DISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVL 68
Query: 63 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
GAEV+W+SCNIFSTQDH KGET EEY +Q +PDG+P NMIL
Sbjct: 69 GAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNMIL 128
Query: 123 DDGGDLTNLV-----HEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 177
DDGGD T + E LS + EE L+ K+ P
Sbjct: 129 DDGGDATMYILIGARAEAGEDVLSNPQSEEEEV------LFAQIKKRMAATPGF------ 176
Query: 178 TKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVN 237
+ + + I+G++EETTTGV+ LY++ K+ L PAINVN
Sbjct: 177 ---------------------FTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVN 215
Query: 238 DSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV 297
DSVTKSKFDN YGC+ESLVDG++R TD+M+AGKVAVV GYGDVGKG AQSL G+RV V
Sbjct: 216 DSVTKSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKV 275
Query: 298 TEIDPINALQASMEGYEL 315
TE+DPI ALQA+M+G+E+
Sbjct: 276 TEVDPICALQAAMDGFEV 293
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 85/115 (73%)
Query: 604 WCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS 663
W + VD P+G +ILL+EGRL+NLG A GHPSFVMS SFTNQVL QIEL+T+
Sbjct: 350 WTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTD 409
Query: 664 QYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
Y VY+LPK LDE+VA LHL+ LG KLT L+E+QA Y+G+ +GP+K +HYRY
Sbjct: 410 AYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 464
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 89/118 (75%), Gaps = 2/118 (1%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGKVAVV GYGDVGKG AQSL G+RV VTE+DPI ALQA+M+G+EV T+++AA
Sbjct: 242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAAS 301
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
I VTTTG KD+I +H +M+D IV NIGHFD EIQV+ L ++ NVKPQV
Sbjct: 302 TADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAAL--RNLKWTNVKPQV 357
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 72/100 (72%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LA+WGRK + +AE EMPGLMA R ++G + LKGARI+G LHMT+QTAVLIETL L
Sbjct: 9 DISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVL 68
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEY 602
GAEV+W+SCNIFSTQDH KGET EEY
Sbjct: 69 GAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEY 108
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA LHL+ LG KLT L+E+QA Y+ + G
Sbjct: 422 LDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQG 455
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 203/313 (64%), Gaps = 22/313 (7%)
Query: 3 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
D+ A++GR I +AE EMPGLMA R ++G + KGA+I G LHMT+QTAVLIETL L
Sbjct: 21 DMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTAL 80
Query: 63 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
GAEV+W SCNIFSTQDH WKGET +EY WC E+ L + G ++I+
Sbjct: 81 GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIV 140
Query: 123 DDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLN 182
DDGGD T L+HE G+ E +Y+ K + P N L+
Sbjct: 141 DDGGDTTLLIHE----------GVKAE------EIYE--KSGQFPDPDSTDNAEFKIVLS 182
Query: 183 MILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 242
+I + G T+ ++Y + + G+SEETTTGV LY+M L PAINVNDSVTK
Sbjct: 183 IIKE--GLKTD--PKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTK 238
Query: 243 SKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
SKFDNLYGCR SL DGL RATD+M+AGKVAVVAGYGDVGKGCA +L+ G+RVIVTEIDP
Sbjct: 239 SKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298
Query: 303 INALQASMEGYEL 315
I ALQA+MEG ++
Sbjct: 299 ICALQATMEGLQV 311
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 89/110 (80%), Gaps = 3/110 (2%)
Query: 612 DRYTLPNGNH-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVG 668
DR+ P N II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW + S +Y
Sbjct: 379 DRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKK 438
Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
VY+LPK LDE+VAALHLE LG KLTKL++DQA Y+ +P+EGPYKP HYRY
Sbjct: 439 VYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 488
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 149/279 (53%), Gaps = 39/279 (13%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
++I+DDGGD T L+HE G+ E +Y+ K + P DS
Sbjct: 137 DLIVDDGGDTTLLIHE----------GVKAE------EIYE--KSGQFPDP-----DSTD 173
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
++F + + +GLK K VV + G RL+ + T +
Sbjct: 174 NAEFKIVLSI---IKEGLKTDPKRYHKMKDRVVGVSEETTTGVK---RLYQMQANGTLLF 227
Query: 302 PINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGK 361
P + S+ + D H L + + D+M+AGKVAVVAGYGDVGK
Sbjct: 228 PAINVNDSVTKSKFDNLYGCRH---------SLPDGLMRATDVMIAGKVAVVAGYGDVGK 278
Query: 362 GCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421
GCA +L+ G+RVIVTEIDPI ALQA+MEG +V T+E+ E IFVTTTG KDII +H
Sbjct: 279 GCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDH 338
Query: 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN-AVEKVNVKPQ 459
+M+++AIVCNIGHFD EI + L+ + V+++ +KPQ
Sbjct: 339 MKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQ 377
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 73/108 (67%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
D+ A++GR I +AE EMPGLMA R ++G + KGA+I G LHMT+QTAVLIETL L
Sbjct: 21 DMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTAL 80
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
GAEV+W SCNIFSTQDH WKGET +EY WC E+ L
Sbjct: 81 GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERAL 128
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VAALHLE LG KLTKL++DQA Y+ + + G
Sbjct: 446 LDEKVAALHLEKLGAKLTKLSKDQADYISVPVEG 479
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/315 (52%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ADI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 9 VADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLV 68
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
LGAEVQWSSCNIFSTQDH WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 69 TLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNM 127
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
ILDDGGDLTNL+H KYPQ L IRGISEETTTGVHNLYKM L VPAINVNDSVTK
Sbjct: 128 ILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 186
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
+ G E G+ + K+ V A
Sbjct: 187 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 219
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
D GC ++L G+G +RVI+TEI
Sbjct: 220 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 244
Query: 301 DPINALQASMEGYEL 315
DPINALQA+MEGYE+
Sbjct: 245 DPINALQAAMEGYEV 259
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA +
Sbjct: 208 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQ 267
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 268 EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 325
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 91/108 (84%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VDRY L NG IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT +YPVGV+
Sbjct: 325 VDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 384
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
LPKKLDE VA HL L VKLTKLTE QA+YLG+ +GP+KPDHYRY
Sbjct: 385 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY 432
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 502 TDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 561
DI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 10 ADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVT 69
Query: 562 LGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVDRYTLPNGNH 621
LGAEVQWSSCNIFSTQDH WKGETDEEY+WCIEQTL Y +
Sbjct: 70 LGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTL---YFKDGPLN 126
Query: 622 IILLAEGRLVNL 633
+IL G L NL
Sbjct: 127 MILDDGGDLTNL 138
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
+LDE VA HL L VKLTKLTE QA+YL + G
Sbjct: 389 KLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDG 423
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 286 bits (733), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/315 (52%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ADI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 12 VADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLV 71
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
LGAEVQWSSCNIFSTQDH WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 72 TLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNM 130
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
ILDDGGDLTNL+H KYPQ L IRGISEETTTGVHNLYKM L VPAINVNDSVTK
Sbjct: 131 ILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 189
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
+ G E G+ + K+ V A
Sbjct: 190 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 222
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
D GC ++L G+G +RVI+TEI
Sbjct: 223 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 247
Query: 301 DPINALQASMEGYEL 315
DPINALQA+MEGYE+
Sbjct: 248 DPINALQAAMEGYEV 262
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA +
Sbjct: 211 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQ 270
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 271 EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 328
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 91/108 (84%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VDRY L NG IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT +YPVGV+
Sbjct: 328 VDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 387
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
LPKKLDE VA HL L VKLTKLTE QA+YLG+ +GP+KPDHYRY
Sbjct: 388 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY 435
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 502 TDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 561
DI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 13 ADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVT 72
Query: 562 LGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVDRYTLPNGNH 621
LGAEVQWSSCNIFSTQDH WKGETDEEY+WCIEQTL Y +
Sbjct: 73 LGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTL---YFKDGPLN 129
Query: 622 IILLAEGRLVNL 633
+IL G L NL
Sbjct: 130 MILDDGGDLTNL 141
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
+LDE VA HL L VKLTKLTE QA+YL + G
Sbjct: 392 KLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDG 426
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 163/315 (51%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ADI LA WGRK + +AENEMPGLM +R Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 8 VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 67
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
LGAEV+WSSCNIFSTQDH WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 68 ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
ILDDGGDLTNL+H K+PQ LS IRGISEETTTGVHNLYKM L VPAINVNDSVTK
Sbjct: 127 ILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 185
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
+ G E G+ + K+ V A
Sbjct: 186 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 218
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
D GC ++L G+G +RVI+TEI
Sbjct: 219 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 243
Query: 301 DPINALQASMEGYEL 315
DPINALQA+MEGYE+
Sbjct: 244 DPINALQAAMEGYEV 258
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA K
Sbjct: 207 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACK 266
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 267 EGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 324
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 93/108 (86%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VDRY L NG+ IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT +YPVGV+
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 383
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
LPKKLDE VA HL L VKLTKLTE QA+YLG+PI GP+KPDHYRY
Sbjct: 384 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 83/109 (76%)
Query: 502 TDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 561
DI LA WGRK + +AENEMPGLM +R Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 9 ADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVA 68
Query: 562 LGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
LGAEV+WSSCNIFSTQDH WKGETDEEY+WCIEQTL
Sbjct: 69 LGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTL 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
+LDE VA HL L VKLTKLTE QA+YL + + G
Sbjct: 388 KLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPING 422
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 281 bits (719), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 164/315 (52%), Positives = 186/315 (59%), Gaps = 64/315 (20%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ADI LA WGRK + +AENEMPGLM +R Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 8 VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 67
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
LGAEV+WSSCNIFSTQDH WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 68 ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
ILDDGGDLTNL+H K+PQ LS IRGISEETTTGVHNLYKM L VPAINVNDSVT
Sbjct: 127 ILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVT-- 184
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
N D+ + G E G+ + K+ V A
Sbjct: 185 -NSKFDN------------------LYGCRESLIDGIKRATDVMIAGKVAVVA------- 218
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
D GC ++L G+G +RVI+TEI
Sbjct: 219 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 243
Query: 301 DPINALQASMEGYEL 315
DPINALQA+MEGYE+
Sbjct: 244 DPINALQAAMEGYEV 258
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA K
Sbjct: 207 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACK 266
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 267 EGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 324
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 93/108 (86%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VDRY L NG+ IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT +YPVGV+
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 383
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
LPKKLDE VA HL L VKLTKLTE QA+YLG+PI GP+KPDHYRY
Sbjct: 384 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 83/109 (76%)
Query: 502 TDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 561
DI LA WGRK + +AENEMPGLM +R Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 9 ADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVA 68
Query: 562 LGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
LGAEV+WSSCNIFSTQDH WKGETDEEY+WCIEQTL
Sbjct: 69 LGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTL 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
+LDE VA HL L VKLTKLTE QA+YL + + G
Sbjct: 388 KLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPING 422
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 281 bits (719), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 162/315 (51%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ADI LA WGRK + +AENEMPGLM +R Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 8 VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 67
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
LGAEV+WSSCNIFSTQDH WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 68 ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
ILDDGGDLTNL+H K+PQ LS IRGISEETTTGVHNLYKM L VPAINVNDSVTK
Sbjct: 127 ILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 185
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
+ G E G+ + K+ V A
Sbjct: 186 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 218
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
D GC ++L G+G +RVI+TEI
Sbjct: 219 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 243
Query: 301 DPINALQASMEGYEL 315
+PINALQA+MEGYE+
Sbjct: 244 EPINALQAAMEGYEV 258
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEI+PINALQA+MEGYEVTTM+EA K
Sbjct: 207 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDEACK 266
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 267 EGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 324
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 93/108 (86%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VDRY L NG+ IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT +YPVGV+
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 383
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
LPKKLDE VA HL L VKLTKLTE QA+YLG+PI GP+KPDHYRY
Sbjct: 384 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 83/109 (76%)
Query: 502 TDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 561
DI LA WGRK + +AENEMPGLM +R Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 9 ADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVA 68
Query: 562 LGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
LGAEV+WSSCNIFSTQDH WKGETDEEY+WCIEQTL
Sbjct: 69 LGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTL 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
+LDE VA HL L VKLTKLTE QA+YL + + G
Sbjct: 388 KLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPING 422
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 210/351 (59%), Gaps = 51/351 (14%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ DI LA +G+ + ++ENEMPGLM +R +YG + LK A+I GCLHMTV+ A+LIETL
Sbjct: 8 VKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQ 67
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXX-XXXXXXXWKGETDEEYVWCIEQTLVFPDGKP-- 117
+LGA+++W SCNI+ST D+ WK ET EEY WC+E L + DG
Sbjct: 68 KLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNG 127
Query: 118 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKE-NKLGVPAINVNDS 176
+MI+DDGGD T LVH +G+ E K+++E N L P N+
Sbjct: 128 PDMIVDDGGDATLLVH----------KGVEYE---------KLYEEKNILPDPEKAKNEE 168
Query: 177 ----VTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVP 232
+T N IL + TN+ +I G+SEETTTGV L KM K+N+L
Sbjct: 169 ERCFLTLLKNSILKNPKKWTNIA--------KKIIGVSEETTTGVLRLKKMDKQNELLFT 220
Query: 233 AINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG 292
AINVND+VTK K+DN+YGCR SL DGL RATD +++GK+ V+ GYGDVGKGCA S++ G
Sbjct: 221 AINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLG 280
Query: 293 SRVIVTEIDPINALQASMEGYE---LDE-------------EVAALHLEHL 327
+RV +TEIDPI A+QA MEG+ LDE V + LEHL
Sbjct: 281 ARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHL 331
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKH--SQYPVG 668
VDR TLPNGN II+LA GRL+NLGCA GHP+FVMS SF NQ AQ++LW ++Y
Sbjct: 370 VDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENK 429
Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
VY+LPK LDE+VA HL+ L LT+L ++Q ++LG+ GP+K + YRY
Sbjct: 430 VYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D +++GK+ V+ GYGDVGKGCA S++ G+RV +TEIDPI A+QA MEG+ V T++E
Sbjct: 252 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 311
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWL-DKNAVEKVNVKPQVS 461
+G F+T TG D+I+ EH L+M+++A+V NIGHFD EIQV+ L + + NVKPQV
Sbjct: 312 KGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVD 371
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LA +G+ + ++ENEMPGLM +R +YG + LK A+I GCLHMTV+ A+LIETL +L
Sbjct: 10 DISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKL 69
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXX-XXXXXXXWKGETDEEYVWCIEQTL 610
GA+++W SCNI+ST D+ WK ET EEY WC+E L
Sbjct: 70 GAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESAL 118
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA HL+ L LT+L ++Q ++L + +G
Sbjct: 437 LDEKVALYHLKKLNASLTELDDNQCQFLGVNKSG 470
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 255 bits (651), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+ADI LA WGRK + +AENE PGL R +Y A K LKGARIAGCLH TV+TAVLIETL+
Sbjct: 9 VADIGLAAWGRKALDIAENEXPGLXRXRERYSASKPLKGARIAGCLHXTVETAVLIETLV 68
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
LGAEVQWSSCNIFSTQ+H WKGETDEEY+WCIEQTL F DG PLN
Sbjct: 69 TLGAEVQWSSCNIFSTQNHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNX 127
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
ILDDGGDLTNL+H KYPQ L IRGISEETTTGVHNLYK L VPAINVNDSVTK
Sbjct: 128 ILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKXXANGILKVPAINVNDSVTK 186
Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/136 (81%), Positives = 121/136 (88%)
Query: 180 PLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDS 239
PLN ILDDGGDLTNL+H KYPQ L IRGISEETTTGVHNLYK L VPAINVNDS
Sbjct: 124 PLNXILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKXXANGILKVPAINVNDS 183
Query: 240 VTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE 299
VTKSKFDNLYGCRESL+DG+KRATD+ +AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TE
Sbjct: 184 VTKSKFDNLYGCRESLIDGIKRATDVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITE 243
Query: 300 IDPINALQASMEGYEL 315
IDPINALQA+ EGYE+
Sbjct: 244 IDPINALQAAXEGYEV 259
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 104/118 (88%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+ +AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+ EGYEVTT +EA +
Sbjct: 208 DVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTTXDEACQ 267
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EG IFVTTTGC DII G HF Q +DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 268 EGNIFVTTTGCIDIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 325
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 87/108 (80%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VDRY L NG IILLAEGRLVNLGCA GHPSFV SNSFTNQV AQIELWT +YPVGV+
Sbjct: 325 VDRYRLKNGRRIILLAEGRLVNLGCAXGHPSFVXSNSFTNQVXAQIELWTHPDKYPVGVH 384
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
LPKKLDE VA HL L VKLTKLTE QA+YLG +GP+KPDHYRY
Sbjct: 385 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGXSCDGPFKPDHYRY 432
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 82/114 (71%)
Query: 497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLI 556
L + DI LA WGRK + +AENE PGL R +Y A K LKGARIAGCLH TV+TAVLI
Sbjct: 5 LPYKVADIGLAAWGRKALDIAENEXPGLXRXRERYSASKPLKGARIAGCLHXTVETAVLI 64
Query: 557 ETLLELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
ETL+ LGAEVQWSSCNIFSTQ+H WKGETDEEY+WCIEQTL
Sbjct: 65 ETLVTLGAEVQWSSCNIFSTQNHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTL 118
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYL 342
+LDE VA HL L VKLTKLTE QA+YL
Sbjct: 389 KLDEAVAEAHLGKLNVKLTKLTEKQAQYL 417
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 135/179 (75%), Gaps = 3/179 (1%)
Query: 3 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
DI LAEWGRK I +AENEMPGLM LRR+YG + LKGA+IAGCLHMTVQTAVLIETL L
Sbjct: 8 DISLAEWGRKAIELAENEMPGLMELRREYGPSQPLKGAKIAGCLHMTVQTAVLIETLKAL 67
Query: 63 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL--VFPDGKPLNM 120
GAE++WSSCNIFSTQD+ WKGETDEEY WCI QT+ DG P NM
Sbjct: 68 GAELRWSSCNIFSTQDNAAAAIAKTGVPVFAWKGETDEEYEWCIAQTVKGFSGDGLP-NM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
ILDDGGDLTNLV ++YP+ + +I GISEETTTGV NLYK + L + AINVNDSVTK
Sbjct: 127 ILDDGGDLTNLVIDRYPELVPKIFGISEETTTGVKNLYKRLSKGNLPISAINVNDSVTK 185
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/134 (74%), Positives = 116/134 (86%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
NMILDDGGDLTNLV ++YP+ + +I GISEETTTGV NLYK + L + AINVNDSVT
Sbjct: 125 NMILDDGGDLTNLVIDRYPELVPKIFGISEETTTGVKNLYKRLSKGNLPISAINVNDSVT 184
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
KSKFDNLYGCRESLVDG+KRATD+M+AGK V GYGDVGKGCA +LR FG+RV+VTE+D
Sbjct: 185 KSKFDNLYGCRESLVDGIKRATDVMIAGKTCCVCGYGDVGKGCAAALRAFGARVVVTEVD 244
Query: 302 PINALQASMEGYEL 315
PINALQASMEGY++
Sbjct: 245 PINALQASMEGYQV 258
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 108/159 (67%), Gaps = 7/159 (4%)
Query: 302 PINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGK 361
PI+A+ +++ V ++L L + + D+M+AGK V GYGDVGK
Sbjct: 173 PISAIN-------VNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTCCVCGYGDVGK 225
Query: 362 GCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421
GCA +LR FG+RV+VTE+DPINALQASMEGY+V +E+ + IFVTTTG DII +H
Sbjct: 226 GCAAALRAFGARVVVTEVDPINALQASMEGYQVALVEDVMADAHIFVTTTGNDDIITSDH 285
Query: 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
F MRDDAIVCNIGHFD EIQV WL+ NA E V +KPQV
Sbjct: 286 FPHMRDDAIVCNIGHFDTEIQVGWLEANAKEHVEIKPQV 324
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 93/114 (81%), Gaps = 6/114 (5%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTK--HSQYP-- 666
VDRYT+ NG HIILLA+GRLVNLGCA GHPSFVMSNSFTNQVLAQIELW+ + +YP
Sbjct: 324 VDRYTMENGRHIILLAKGRLVNLGCASGHPSFVMSNSFTNQVLAQIELWSNRDNGKYPRG 383
Query: 667 --VGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
GV+ LPK LDE+VAALHL H+G KLTKLT QA+Y+ P+ GP+KPDHYRY
Sbjct: 384 DKAGVFFLPKALDEKVAALHLAHVGAKLTKLTPKQAEYINCPVNGPFKPDHYRY 437
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/133 (63%), Positives = 93/133 (69%), Gaps = 5/133 (3%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LAEWGRK I +AENEMPGLM LRR+YG + LKGA+IAGCLHMTVQTAVLIETL L
Sbjct: 8 DISLAEWGRKAIELAENEMPGLMELRREYGPSQPLKGAKIAGCLHMTVQTAVLIETLKAL 67
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL--VDRYTLPNGN 620
GAE++WSSCNIFSTQD+ WKGETDEEY WCI QT+ LPN
Sbjct: 68 GAELRWSSCNIFSTQDNAAAAIAKTGVPVFAWKGETDEEYEWCIAQTVKGFSGDGLPN-- 125
Query: 621 HIILLAEGRLVNL 633
+IL G L NL
Sbjct: 126 -MILDDGGDLTNL 137
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VAALHL H+G KLTKLT QA+Y++ + G
Sbjct: 395 LDEKVAALHLAHVGAKLTKLTPKQAEYINCPVNG 428
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 137/179 (76%), Gaps = 3/179 (1%)
Query: 3 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
DI LAEWGR+ + +AENEMPGLM LRR+YG K LKGA+IAGCLHMT+QTAVLIETL+EL
Sbjct: 7 DISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVEL 66
Query: 63 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL--VFPDGKPLNM 120
GAEV+W+SCNIFSTQDH WKGET+EEY+WC++QTL DG P NM
Sbjct: 67 GAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYP-NM 125
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
+LDDGGDLTN V ++ + +I G+SEETTTGV NLYK + KL +PA+NVNDSVTK
Sbjct: 126 LLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTK 184
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 96/134 (71%), Positives = 115/134 (85%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
NM+LDDGGDLTN V ++ + +I G+SEETTTGV NLYK + KL +PA+NVNDSVT
Sbjct: 124 NMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVT 183
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
KSKFDNLYGCRESLVDG+KRATD+M+AGK A V GYGDVGKGCA +LR FG+RV+VTE+D
Sbjct: 184 KSKFDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVD 243
Query: 302 PINALQASMEGYEL 315
PINALQA+MEGY++
Sbjct: 244 PINALQAAMEGYQV 257
Score = 178 bits (451), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 97/118 (82%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGK A V GYGDVGKGCA +LR FG+RV+VTE+DPINALQA+MEGY+V +E+ +
Sbjct: 206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVE 265
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
E IFVTTTG DII EHF +MRDDAIVCNIGHFD EIQV+WL NA E+V VKPQV
Sbjct: 266 EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQV 323
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 84/114 (73%), Positives = 92/114 (80%), Gaps = 6/114 (5%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVG 668
VDRYT+ NG HIILLAEGRLVNLGCA GHPSFVMSNSF NQVLAQIELWT +YP G
Sbjct: 323 VDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRG 382
Query: 669 ----VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
VY LPKKLDE+VAALHL LG KLTKLT QA+Y+ P++GP+KPDHYRY
Sbjct: 383 AKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHYRY 436
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 87/108 (80%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LAEWGR+ + +AENEMPGLM LRR+YG K LKGA+IAGCLHMT+QTAVLIETL+EL
Sbjct: 7 DISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVEL 66
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
GAEV+W+SCNIFSTQDH WKGET+EEY+WC++QTL
Sbjct: 67 GAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTL 114
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
+LDE+VAALHL LG KLTKLT QA+Y++ + G
Sbjct: 393 KLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDG 427
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 181/362 (50%), Gaps = 110/362 (30%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+AD+ LA++GRK + +AE+EMPGLM+LRR+Y + LKGARI+G LHMTVQTAVLIETL
Sbjct: 23 IADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLT 82
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXX---------XXXXXXXWKGETDEEYVWCIEQTLV 111
LGAEV+W+SCNIFSTQDH WKGET EEY W EQ L
Sbjct: 83 ALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLT 142
Query: 112 FPD-GKPLNMILDDGGDLTNLV-------------------------------------H 133
+PD KP NMILDDGGD T LV
Sbjct: 143 WPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVFLNLLRTRFETDK 202
Query: 134 EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTN 193
+K+ + ++G++EETTTGV LY+ L PAINVNDSVTK +
Sbjct: 203 DKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTK-------------S 249
Query: 194 LVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRE 253
KY S I GI+ T D L G ++
Sbjct: 250 KFDNKYGTRHSLIDGINRGT--------------------------------DALIGGKK 277
Query: 254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY 313
L + GYGDVGKGCA++++ G+RV VTEIDPINALQA MEG+
Sbjct: 278 VL------------------ICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGF 319
Query: 314 EL 315
++
Sbjct: 320 DV 321
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 611 VDRYTLPN-GNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGV 669
VD +T + G II+L+EGRL+NLG A GHPSFVMSNSF NQ +AQIELWTK+ +Y V
Sbjct: 387 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEYDNEV 446
Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
Y LPK LDE+VA +H+E LG LTKLT++QA+YLG+ +EGPYKPDHYRY
Sbjct: 447 YRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 139/283 (49%), Gaps = 44/283 (15%)
Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
KP NMILDDGGD T LV +RG+ E GV VP +D
Sbjct: 148 KPANMILDDGGDATMLV----------LRGMQYEKA-GV-------------VPPAEEDD 183
Query: 239 SVTKSKFDNLYGCR-ESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV 297
F NL R E+ D + + + G LRL+
Sbjct: 184 PAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGV----------LRLYQFAAAG 233
Query: 298 TEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG 357
P + S+ + D + H L + + D ++ GK ++ GYG
Sbjct: 234 DLAFPAINVNDSVTKSKFDNKYGTRH---------SLIDGINRGTDALIGGKKVLICGYG 284
Query: 358 DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDII 417
DVGKGCA++++ G+RV VTEIDPINALQA MEG++V T+EEA + I VT TG KDII
Sbjct: 285 DVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDII 344
Query: 418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EH M+D AI+ NIGHFD EI ++ L+++ +VNVKPQV
Sbjct: 345 MLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQV 387
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 87/143 (60%), Gaps = 12/143 (8%)
Query: 477 TCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKI 536
T N + K SL + + D+ LA++GRK + +AE+EMPGLM+LRR+Y +
Sbjct: 2 TGNLVTKNSLTPDVRNGIDFKI---ADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQP 58
Query: 537 LKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHXXXXXXX---------X 587
LKGARI+G LHMTVQTAVLIETL LGAEV+W+SCNIFSTQDH
Sbjct: 59 LKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPK 118
Query: 588 XXXXXXWKGETDEEYVWCIEQTL 610
WKGET EEY W EQ L
Sbjct: 119 GVPVFAWKGETLEEYWWAAEQML 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA +H+E LG LTKLT++QA+YL + + G
Sbjct: 453 LDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEG 486
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 181/362 (50%), Gaps = 110/362 (30%)
Query: 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
+AD+ LA++GRK + +AE+EMPGLM+LRR+Y + LKGARI+G LHMTVQTAVLIETL
Sbjct: 22 IADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLT 81
Query: 61 ELGAEVQWSSCNIFSTQDHXXXXXXX---------XXXXXXXWKGETDEEYVWCIEQTLV 111
LGAEV+W+SCNIFSTQDH WKGET EEY W EQ L
Sbjct: 82 ALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLT 141
Query: 112 FPD-GKPLNMILDDGGDLTNLV-------------------------------------H 133
+PD KP NMILDDGGD T LV
Sbjct: 142 WPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVFLNLLRTRFETDK 201
Query: 134 EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTN 193
+K+ + ++G++EETTTGV LY+ L PAINVNDSVTK +
Sbjct: 202 DKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTK-------------S 248
Query: 194 LVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRE 253
KY S I GI+ T D L G ++
Sbjct: 249 KFDNKYGTRHSLIDGINRGT--------------------------------DALIGGKK 276
Query: 254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY 313
L + GYGDVGKGCA++++ G+RV VTEIDPINALQA MEG+
Sbjct: 277 VL------------------ICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGF 318
Query: 314 EL 315
++
Sbjct: 319 DV 320
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 611 VDRYTLPN-GNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGV 669
VD +T + G II+L+EGRL+NLG A GHPSFVMSNSF NQ +AQIELWTK+ +Y V
Sbjct: 386 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEYDNEV 445
Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
Y LPK LDE+VA +H+E LG LTKLT++QA+YLG+ +EGPYKPDHYRY
Sbjct: 446 YRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 494
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 139/283 (49%), Gaps = 44/283 (15%)
Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
KP NMILDDGGD T LV +RG+ E GV VP +D
Sbjct: 147 KPANMILDDGGDATMLV----------LRGMQYEKA-GV-------------VPPAEEDD 182
Query: 239 SVTKSKFDNLYGCR-ESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV 297
F NL R E+ D + + + G LRL+
Sbjct: 183 PAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGV----------LRLYQFAAAG 232
Query: 298 TEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG 357
P + S+ + D + H L + + D ++ GK ++ GYG
Sbjct: 233 DLAFPAINVNDSVTKSKFDNKYGTRH---------SLIDGINRGTDALIGGKKVLICGYG 283
Query: 358 DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDII 417
DVGKGCA++++ G+RV VTEIDPINALQA MEG++V T+EEA + I VT TG KDII
Sbjct: 284 DVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDII 343
Query: 418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
EH M+D AI+ NIGHFD EI ++ L+++ +VNVKPQV
Sbjct: 344 MLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQV 386
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 87/143 (60%), Gaps = 12/143 (8%)
Query: 477 TCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKI 536
T N + K SL + + D+ LA++GRK + +AE+EMPGLM+LRR+Y +
Sbjct: 1 TGNLVTKNSLTPDVRNGIDFKI---ADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQP 57
Query: 537 LKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHXXXXXXX---------X 587
LKGARI+G LHMTVQTAVLIETL LGAEV+W+SCNIFSTQDH
Sbjct: 58 LKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPK 117
Query: 588 XXXXXXWKGETDEEYVWCIEQTL 610
WKGET EEY W EQ L
Sbjct: 118 GVPVFAWKGETLEEYWWAAEQML 140
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA +H+E LG LTKLT++QA+YL + + G
Sbjct: 452 LDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEG 485
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 170/313 (54%), Gaps = 64/313 (20%)
Query: 3 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
+IK AE+GR+ I +AE EMP LMALR++ +K L GA+I GC H+T QTAVL+ETL L
Sbjct: 18 NIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGAL 77
Query: 63 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
GA+ +W++CNI+ST + WKGE+++++ WCI++ + +P NMIL
Sbjct: 78 GAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQP-NMIL 136
Query: 123 DDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLN 182
DDGGDLT+ +++KYP +I+GI EE+ TGVH LY++ K KL VPA+NVNDSVTK
Sbjct: 137 DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTK--- 193
Query: 183 MILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 242
Q + E G+ K
Sbjct: 194 ------------------QKFDNLYCCRESILDGL------------------------K 211
Query: 243 SKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
D ++G ++ +V G YG+VGKGC +L+ GS V VTEIDP
Sbjct: 212 RTTDMMFGGKQVVVCG------------------YGEVGKGCCAALKAMGSIVYVTEIDP 253
Query: 303 INALQASMEGYEL 315
I ALQA M+G+ L
Sbjct: 254 ICALQACMDGFRL 266
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 121/279 (43%), Gaps = 79/279 (28%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
NMILDDGGDLT+ +++KYP N++K K
Sbjct: 133 NMILDDGGDLTHWIYKKYP------------------NMFKKIK---------------- 158
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
G E V G+ R + AGK+ V A
Sbjct: 159 --------GIVEESVTGVHRLYQLSKAGKLCVPA-------------------------- 184
Query: 302 PINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGK 361
+++ V ++L + + + D+M GK VV GYG+VGK
Sbjct: 185 -----------MNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGK 233
Query: 362 GCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421
GC +L+ GS V VTEIDPI ALQA M+G+ + + E ++ I +T TG K+++ EH
Sbjct: 234 GCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREH 293
Query: 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
+M++ IVCN+GH + EI V+ L + V+ QV
Sbjct: 294 LDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQV 332
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 74/108 (68%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
+IK AE+GR+ I +AE EMP LMALR++ +K L GA+I GC H+T QTAVL+ETL L
Sbjct: 18 NIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGAL 77
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
GA+ +W++CNI+ST + WKGE+++++ WCI++ +
Sbjct: 78 GAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCV 125
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 601 EYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWT 660
E W ++ VD P+G I+LLAEGRL+NL C+ P+FV+S + T Q LA IEL+
Sbjct: 322 ELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYN 380
Query: 661 K-HSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPD 714
+Y VY+LPKK+DE VA+LHL LT+LT++QAKYLGL GP+KP+
Sbjct: 381 APEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN 435
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
++DE VA+LHL LT+LT++QAKYL +
Sbjct: 396 KMDEYVASLHLPTFDAHLTELTDEQAKYLGL 426
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 3 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
+IK AE+GR+ I +AE +M L++LR++ +K L GA+I GC H+T QTAVLIETL L
Sbjct: 23 NIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAVLIETLCAL 82
Query: 63 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
GA+ +WS+CNI+STQ+ WKGE+++++ WCI++ V DG NMIL
Sbjct: 83 GAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRC-VNMDGWQANMIL 141
Query: 123 DDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
DDGGDLT+ V++KYP +IRGI EE+ TGVH LY++ K KL VPA+NVNDSVTK
Sbjct: 142 DDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTK 198
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/134 (64%), Positives = 105/134 (78%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
NMILDDGGDLT+ V++KYP +IRGI EE+ TGVH LY++ K KL VPA+NVNDSVT
Sbjct: 138 NMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVT 197
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
K KFDNLY CRES++DGLKR TD+M GK VV GYG+VGKGC +L+ G+ V +TEID
Sbjct: 198 KQKFDNLYCCRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEID 257
Query: 302 PINALQASMEGYEL 315
PI ALQA M+G+ +
Sbjct: 258 PICALQACMDGFRV 271
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 2/119 (1%)
Query: 601 EYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWT 660
E W ++ VD P+G ++LLAEGRL+NL C+ P+FV+S + T Q LA IEL+
Sbjct: 327 ELTWERVRSQVDHVIWPDGKRVVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYN 385
Query: 661 K-HSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
+Y VY+LPKK+DE VA+LHL LT+L +DQAKYLGL GP+KP++YRY
Sbjct: 386 APEGRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELADDQAKYLGLNKNGPFKPNYYRY 444
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 74/108 (68%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
+IK AE+GR+ I +AE +M L++LR++ +K L GA+I GC H+T QTAVLIETL L
Sbjct: 23 NIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAVLIETLCAL 82
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
GA+ +WS+CNI+STQ+ WKGE+++++ WCI++ +
Sbjct: 83 GAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRCV 130
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
++DE VA+LHL LT+L +DQAKYL +
Sbjct: 401 KMDEYVASLHLPSFDAHLTELADDQAKYLGL 431
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 278 GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTED 337
GD+G G + L+G + +N+ ++ G + + L +E G L +
Sbjct: 187 GDIGVGGREIGYLYGQYKKI-----VNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLE 241
Query: 338 QAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
K L+I + + AVV+G G+V C Q L +V+
Sbjct: 242 VLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVL 279
>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181
pdb|3AWD|B Chain B, Crystal Structure Of Gox2181
pdb|3AWD|C Chain C, Crystal Structure Of Gox2181
pdb|3AWD|D Chain D, Crystal Structure Of Gox2181
Length = 260
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 346 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQA----SMEGYEVTTMEEA 400
L +VA+V G ++G C +L G+RVI+ ++D A +A MEG++V+++
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVV-- 68
Query: 401 AKEGGIFVTTT-GCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQ 442
+ VT T ++ +R H + R D +V G E++
Sbjct: 69 -----MDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVK 106
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 267 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQA----SMEGYELDEEVAA 321
L +VA+V G ++G C +L G+RVI+ ++D A +A MEG+++ V
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMD 70
Query: 322 LHLEHLGVKLTKLTEDQAKYLDIMLA 347
+ + +Q +DI++A
Sbjct: 71 VTNTESVQNAVRSVHEQEGRVDILVA 96
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 387
G + T + AK L + GK + G G+VG+ A L G++VI + IN +
Sbjct: 190 GFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA--VSDINGVAY 247
Query: 388 SMEGYEVTTMEE 399
EG V +++
Sbjct: 248 RKEGLNVELIQK 259
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE--IDPINALQASMEGYELDEEVAALHLEH 326
GK V G G +G+ AQ + FG+ V+ + + P A Q +E LD+ +A +
Sbjct: 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLA--RADF 199
Query: 327 LGVKLTKLTE 336
+ V L K E
Sbjct: 200 ISVHLPKTPE 209
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE--IDPINALQASMEGYELDEEVAALHLEH 326
GK V G G +G+ AQ + FG+ V+ + + P A Q +E LD+ +A +
Sbjct: 141 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLA--RADF 198
Query: 327 LGVKLTKLTE 336
+ V L K E
Sbjct: 199 ISVHLPKTPE 208
>pdb|1LSS|A Chain A, Ktn Mja218 Crystal Structure In Complex With Nad+
pdb|1LSS|B Chain B, Ktn Mja218 Crystal Structure In Complex With Nad+
pdb|1LSS|C Chain C, Ktn Mja218 Crystal Structure In Complex With Nad+
pdb|1LSS|D Chain D, Ktn Mja218 Crystal Structure In Complex With Nad+
Length = 140
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP---------INALQASMEGYEVTTME 398
G ++AG G VG A+SL G +++ +ID I+AL + + ++ T+E
Sbjct: 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLE 63
Query: 399 EAA-KEGGIFVTTTGCKDI 416
+A ++ +++ TG +++
Sbjct: 64 DAGIEDADMYIAVTGKEEV 82
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM--- 397
+ D LAGK V G G+V + L G+++I+T+I+ A+Q +++ + T +
Sbjct: 166 FGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINE-EAVQRAVDAFGATAVGIN 224
Query: 398 EEAAKEGGIFV 408
E ++E IF
Sbjct: 225 EIYSQEADIFA 235
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
LAGK + G+G +G G +V+ +I I +A + ++EE K
Sbjct: 140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKAVSLEELLKNSD 198
Query: 406 IF----VTTTGCKDIIRGEHFLQMRDDAIVCN 433
+ + K II F M+D+ I+ N
Sbjct: 199 VISLHVTVSKDAKPIIDYPQFELMKDNVIIVN 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,163,754
Number of Sequences: 62578
Number of extensions: 796773
Number of successful extensions: 2383
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2235
Number of HSP's gapped (non-prelim): 132
length of query: 718
length of database: 14,973,337
effective HSP length: 106
effective length of query: 612
effective length of database: 8,340,069
effective search space: 5104122228
effective search space used: 5104122228
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)