Query psy7896
Match_columns 718
No_of_seqs 522 out of 2883
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 21:36:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1370|consensus 100.0 5E-142 1E-146 1095.7 35.0 424 1-718 10-434 (434)
2 COG0499 SAM1 S-adenosylhomocys 100.0 7E-132 1E-136 1042.4 36.6 413 1-710 7-420 (420)
3 PLN02494 adenosylhomocysteinas 100.0 1E-121 2E-126 1012.4 43.1 461 1-718 8-477 (477)
4 PTZ00075 Adenosylhomocysteinas 100.0 1E-120 2E-125 1006.3 42.6 461 1-718 7-476 (476)
5 PRK05476 S-adenosyl-L-homocyst 100.0 1E-107 3E-112 898.1 40.2 416 1-712 10-425 (425)
6 TIGR00936 ahcY adenosylhomocys 100.0 3E-107 6E-112 891.1 38.5 406 8-710 1-406 (406)
7 cd00401 AdoHcyase S-adenosyl-L 100.0 1E-100 3E-105 840.4 38.9 413 4-710 1-413 (413)
8 PF05221 AdoHcyase: S-adenosyl 100.0 9.4E-92 2E-96 722.1 20.8 183 1-246 5-187 (268)
9 PF05221 AdoHcyase: S-adenosyl 100.0 7.4E-47 1.6E-51 389.7 11.5 217 498-717 2-268 (268)
10 COG0499 SAM1 S-adenosylhomocys 100.0 4.3E-45 9.3E-50 385.8 11.2 174 497-691 3-177 (420)
11 PLN02494 adenosylhomocysteinas 100.0 8.6E-43 1.9E-47 385.9 13.6 136 496-635 3-140 (477)
12 KOG1370|consensus 100.0 1.5E-42 3.3E-47 358.8 8.4 178 496-691 5-182 (434)
13 PTZ00075 Adenosylhomocysteinas 100.0 8.5E-42 1.8E-46 378.8 12.9 137 497-635 3-140 (476)
14 cd00401 AdoHcyase S-adenosyl-L 100.0 6.7E-38 1.4E-42 345.0 13.0 128 504-634 1-128 (413)
15 PRK05476 S-adenosyl-L-homocyst 100.0 1.6E-37 3.5E-42 342.9 12.5 133 497-634 6-138 (425)
16 TIGR00936 ahcY adenosylhomocys 100.0 1.1E-36 2.3E-41 334.6 13.0 121 508-634 1-121 (406)
17 PF00670 AdoHcyase_NAD: S-aden 100.0 7.3E-34 1.6E-38 276.2 11.4 135 247-460 1-135 (162)
18 COG1052 LdhA Lactate dehydroge 99.9 3.6E-25 7.8E-30 238.0 17.2 223 268-499 66-296 (324)
19 COG0111 SerA Phosphoglycerate 99.9 9.1E-25 2E-29 235.0 15.5 215 269-498 67-289 (324)
20 PRK15438 erythronate-4-phospha 99.9 5.8E-23 1.3E-27 224.8 19.7 259 270-568 57-374 (378)
21 PRK15409 bifunctional glyoxyla 99.9 1.2E-22 2.5E-27 218.8 17.5 217 269-497 67-291 (323)
22 KOG0068|consensus 99.9 5.3E-23 1.2E-27 217.0 14.3 171 271-448 70-248 (406)
23 PRK00257 erythronate-4-phospha 99.9 3.7E-22 7.9E-27 218.9 20.2 263 271-566 58-380 (381)
24 PRK08410 2-hydroxyacid dehydro 99.9 1.4E-22 3.1E-27 217.0 16.0 218 269-499 64-291 (311)
25 PRK06487 glycerate dehydrogena 99.9 8E-22 1.7E-26 211.8 15.5 214 269-497 67-290 (317)
26 PF02826 2-Hacid_dh_C: D-isome 99.9 9.1E-22 2E-26 194.5 14.4 149 338-493 26-178 (178)
27 PLN02306 hydroxypyruvate reduc 99.9 1.3E-21 2.8E-26 215.1 16.3 216 270-497 88-326 (386)
28 PRK06932 glycerate dehydrogena 99.9 1.7E-21 3.8E-26 209.0 15.9 218 269-498 66-293 (314)
29 PRK11790 D-3-phosphoglycerate 99.9 1.1E-21 2.5E-26 217.3 13.5 168 269-448 76-251 (409)
30 TIGR01327 PGDH D-3-phosphoglyc 99.9 2.3E-20 5.1E-25 212.8 22.4 171 270-448 64-241 (525)
31 PRK13243 glyoxylate reductase; 99.9 1.4E-20 2.9E-25 203.6 18.0 218 269-499 68-296 (333)
32 PLN02928 oxidoreductase family 99.9 1E-20 2.2E-25 205.7 17.0 214 269-497 83-317 (347)
33 PRK07574 formate dehydrogenase 99.8 1.2E-20 2.7E-25 207.2 14.8 211 269-499 115-341 (385)
34 PRK13581 D-3-phosphoglycerate 99.8 1.1E-19 2.4E-24 207.3 21.1 172 269-448 65-242 (526)
35 PLN03139 formate dehydrogenase 99.8 3.3E-20 7.2E-25 203.8 14.7 211 269-499 122-348 (386)
36 KOG0069|consensus 99.8 2E-19 4.4E-24 193.0 14.6 209 268-498 84-308 (336)
37 PRK12480 D-lactate dehydrogena 99.8 2.6E-18 5.6E-23 185.7 15.0 221 269-498 70-303 (330)
38 PRK06436 glycerate dehydrogena 99.8 3E-18 6.4E-23 183.3 13.4 100 342-448 116-221 (303)
39 PRK15469 ghrA bifunctional gly 99.8 3.6E-18 7.7E-23 183.4 13.3 147 342-496 130-280 (312)
40 PRK08605 D-lactate dehydrogena 99.8 8.1E-18 1.8E-22 182.0 15.6 213 270-497 71-304 (332)
41 TIGR02853 spore_dpaA dipicolin 99.3 2.5E-11 5.4E-16 129.3 14.9 109 343-452 146-257 (287)
42 PRK13403 ketol-acid reductoiso 99.2 5.8E-11 1.2E-15 127.7 8.7 95 344-438 12-109 (335)
43 PRK08306 dipicolinate synthase 99.0 3.2E-09 6.8E-14 113.7 14.4 104 343-447 147-253 (296)
44 KOG0067|consensus 98.7 4.2E-08 9.1E-13 106.1 7.8 207 269-500 96-321 (435)
45 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 1.7E-07 3.7E-12 95.1 9.0 94 342-437 22-117 (200)
46 PRK14189 bifunctional 5,10-met 98.5 2.4E-07 5.2E-12 98.8 9.3 81 341-437 151-232 (285)
47 PRK05479 ketol-acid reductoiso 98.5 1.8E-07 3.8E-12 101.8 8.2 93 344-437 13-109 (330)
48 TIGR00518 alaDH alanine dehydr 98.5 3.8E-07 8.2E-12 100.7 9.7 91 346-436 165-268 (370)
49 PRK09424 pntA NAD(P) transhydr 98.5 1.3E-06 2.7E-11 100.1 14.1 162 268-436 85-286 (509)
50 PF07991 IlvN: Acetohydroxy ac 98.5 2.1E-07 4.5E-12 91.4 6.6 91 346-436 2-96 (165)
51 TIGR00561 pntA NAD(P) transhyd 98.5 1.7E-06 3.8E-11 98.9 15.0 162 268-436 84-285 (511)
52 TIGR00465 ilvC ketol-acid redu 98.4 1E-06 2.2E-11 95.4 9.7 111 346-460 1-118 (314)
53 PRK14194 bifunctional 5,10-met 98.4 1.2E-06 2.5E-11 94.2 9.5 80 341-436 152-232 (301)
54 PRK14175 bifunctional 5,10-met 98.4 1.3E-06 2.7E-11 93.4 9.6 81 341-437 151-232 (286)
55 PRK05225 ketol-acid reductoiso 98.4 3.5E-07 7.6E-12 102.4 5.3 94 344-437 32-133 (487)
56 PF03446 NAD_binding_2: NAD bi 98.4 1E-06 2.2E-11 86.1 7.6 90 349-438 2-97 (163)
57 PF02882 THF_DHG_CYH_C: Tetrah 98.3 3.3E-06 7.2E-11 83.2 9.4 81 341-437 29-110 (160)
58 cd01080 NAD_bind_m-THF_DH_Cycl 98.3 4.4E-06 9.4E-11 82.9 9.6 79 343-437 39-118 (168)
59 PRK10792 bifunctional 5,10-met 98.2 5E-06 1.1E-10 88.8 10.5 80 341-436 152-232 (285)
60 PRK14191 bifunctional 5,10-met 98.2 3.7E-06 8E-11 89.8 9.2 80 341-436 150-230 (285)
61 PRK14192 bifunctional 5,10-met 98.2 5E-06 1.1E-10 88.9 10.0 81 342-438 153-234 (283)
62 PRK14176 bifunctional 5,10-met 98.2 4.5E-06 9.8E-11 89.2 9.4 80 341-436 157-237 (287)
63 cd05212 NAD_bind_m-THF_DH_Cycl 98.2 7.6E-06 1.6E-10 79.0 9.7 82 341-438 21-103 (140)
64 cd01079 NAD_bind_m-THF_DH NAD 98.2 6.2E-06 1.3E-10 83.5 9.4 92 343-437 57-158 (197)
65 PF01262 AlaDh_PNT_C: Alanine 98.1 7E-06 1.5E-10 80.8 8.4 93 344-436 16-140 (168)
66 PRK14179 bifunctional 5,10-met 98.1 7.9E-06 1.7E-10 87.3 9.3 81 341-437 151-232 (284)
67 PRK11559 garR tartronate semia 98.1 7.7E-06 1.7E-10 86.8 9.2 90 349-438 3-99 (296)
68 PRK14170 bifunctional 5,10-met 98.1 7.9E-06 1.7E-10 87.2 9.1 81 341-437 150-231 (284)
69 PRK14188 bifunctional 5,10-met 98.1 7.8E-06 1.7E-10 87.9 8.8 79 342-437 152-232 (296)
70 PRK14190 bifunctional 5,10-met 98.1 9.3E-06 2E-10 86.7 9.3 81 341-437 151-232 (284)
71 TIGR01505 tartro_sem_red 2-hyd 98.1 7.4E-06 1.6E-10 87.0 8.4 89 350-438 1-96 (291)
72 PRK14169 bifunctional 5,10-met 98.1 1.3E-05 2.8E-10 85.5 9.5 81 341-437 149-230 (282)
73 PRK14178 bifunctional 5,10-met 98.1 1E-05 2.2E-10 86.2 8.7 80 341-436 145-225 (279)
74 PRK14166 bifunctional 5,10-met 98.1 1.2E-05 2.7E-10 85.7 9.1 80 341-436 150-230 (282)
75 PRK14183 bifunctional 5,10-met 98.1 1.3E-05 2.8E-10 85.5 9.1 80 341-436 150-230 (281)
76 PRK14177 bifunctional 5,10-met 98.1 1.3E-05 2.9E-10 85.5 9.1 80 341-436 152-232 (284)
77 PLN02712 arogenate dehydrogena 98.1 8.7E-06 1.9E-10 96.3 8.5 104 342-447 363-471 (667)
78 PLN02256 arogenate dehydrogena 98.1 6.9E-05 1.5E-09 80.9 14.6 101 346-448 34-139 (304)
79 cd05191 NAD_bind_amino_acid_DH 98.1 2.2E-05 4.7E-10 69.0 8.9 68 343-435 18-86 (86)
80 PRK14186 bifunctional 5,10-met 98.0 1.6E-05 3.4E-10 85.5 9.5 81 341-437 151-232 (297)
81 PRK14171 bifunctional 5,10-met 98.0 1.4E-05 3E-10 85.5 9.0 80 341-436 152-232 (288)
82 PRK14187 bifunctional 5,10-met 98.0 1.6E-05 3.5E-10 85.2 9.4 80 341-436 153-233 (294)
83 PRK14172 bifunctional 5,10-met 98.0 1.7E-05 3.8E-10 84.4 9.5 81 341-437 151-232 (278)
84 PRK14173 bifunctional 5,10-met 98.0 1.7E-05 3.7E-10 84.8 9.4 81 341-437 148-229 (287)
85 PLN02516 methylenetetrahydrofo 98.0 1.6E-05 3.4E-10 85.5 9.1 81 341-437 160-241 (299)
86 PRK14180 bifunctional 5,10-met 98.0 1.8E-05 3.9E-10 84.5 9.2 80 341-436 151-231 (282)
87 PRK12779 putative bifunctional 98.0 1.4E-05 3E-10 97.9 9.5 113 267-379 304-478 (944)
88 PLN02897 tetrahydrofolate dehy 98.0 1.6E-05 3.5E-10 86.6 8.9 81 341-437 207-288 (345)
89 PLN02616 tetrahydrofolate dehy 98.0 1.6E-05 3.6E-10 87.0 8.9 81 341-437 224-305 (364)
90 PRK14182 bifunctional 5,10-met 98.0 1.8E-05 4E-10 84.4 9.1 80 341-436 150-230 (282)
91 PRK14181 bifunctional 5,10-met 98.0 2.4E-05 5.2E-10 83.7 9.4 81 341-437 146-231 (287)
92 PRK14193 bifunctional 5,10-met 98.0 2.5E-05 5.5E-10 83.4 9.3 81 341-437 151-234 (284)
93 PRK12490 6-phosphogluconate de 98.0 2.9E-05 6.2E-10 83.2 9.3 88 350-438 2-97 (299)
94 PRK15461 NADH-dependent gamma- 97.9 2.6E-05 5.6E-10 83.5 8.9 90 349-438 2-98 (296)
95 PRK14184 bifunctional 5,10-met 97.9 3E-05 6.5E-10 82.9 9.0 80 341-436 150-234 (286)
96 PRK14185 bifunctional 5,10-met 97.9 3.5E-05 7.7E-10 82.6 9.3 80 341-436 150-234 (293)
97 COG0686 Ald Alanine dehydrogen 97.9 2E-05 4.3E-10 84.4 7.2 90 346-436 166-269 (371)
98 PRK14168 bifunctional 5,10-met 97.9 3.5E-05 7.6E-10 82.8 9.2 80 341-436 154-238 (297)
99 PRK14167 bifunctional 5,10-met 97.9 3.7E-05 8.1E-10 82.6 9.3 80 341-436 150-234 (297)
100 PRK12491 pyrroline-5-carboxyla 97.9 8.5E-05 1.8E-09 78.9 12.0 97 349-448 3-107 (272)
101 TIGR01035 hemA glutamyl-tRNA r 97.9 2.9E-05 6.3E-10 87.2 8.7 98 345-443 177-284 (417)
102 PF01488 Shikimate_DH: Shikima 97.9 2.6E-05 5.6E-10 74.2 6.8 93 345-437 9-111 (135)
103 cd01065 NAD_bind_Shikimate_DH 97.9 4.7E-05 1E-09 72.6 8.6 96 343-438 14-119 (155)
104 COG2084 MmsB 3-hydroxyisobutyr 97.9 3.5E-05 7.5E-10 82.5 7.9 90 349-438 1-98 (286)
105 PRK14174 bifunctional 5,10-met 97.8 5.4E-05 1.2E-09 81.4 9.1 81 341-437 152-237 (295)
106 COG0190 FolD 5,10-methylene-te 97.8 4.8E-05 1E-09 80.9 8.3 81 341-437 149-230 (283)
107 PRK09599 6-phosphogluconate de 97.8 7.2E-05 1.6E-09 80.1 9.4 89 349-438 1-97 (301)
108 PRK00045 hemA glutamyl-tRNA re 97.8 5.6E-05 1.2E-09 85.0 8.5 93 345-437 179-282 (423)
109 COG0059 IlvC Ketol-acid reduct 97.8 5.3E-05 1.2E-09 81.0 7.6 90 345-434 15-108 (338)
110 PRK07417 arogenate dehydrogena 97.8 4.4E-05 9.6E-10 80.9 7.1 90 349-438 1-94 (279)
111 PLN02545 3-hydroxybutyryl-CoA 97.7 0.00031 6.7E-09 74.9 12.8 89 349-437 5-122 (295)
112 PLN02712 arogenate dehydrogena 97.7 8.2E-05 1.8E-09 88.2 8.4 91 347-438 51-146 (667)
113 PRK07502 cyclohexadienyl dehyd 97.7 0.0001 2.2E-09 79.1 8.2 91 348-438 6-103 (307)
114 PF03807 F420_oxidored: NADP o 97.7 9.1E-05 2E-09 65.4 6.4 85 350-435 1-94 (96)
115 cd01076 NAD_bind_1_Glu_DH NAD( 97.7 0.00011 2.3E-09 76.3 7.9 84 343-427 26-129 (227)
116 COG0345 ProC Pyrroline-5-carbo 97.7 0.00043 9.4E-09 73.5 12.2 107 349-460 2-119 (266)
117 PRK08655 prephenate dehydrogen 97.6 0.00074 1.6E-08 76.5 14.8 89 349-438 1-95 (437)
118 PRK12831 putative oxidoreducta 97.6 0.00016 3.4E-09 82.3 9.1 37 266-302 137-173 (464)
119 PRK14618 NAD(P)H-dependent gly 97.6 0.00016 3.6E-09 78.1 8.8 88 348-437 4-106 (328)
120 PRK15059 tartronate semialdehy 97.6 0.00016 3.6E-09 77.4 8.6 88 350-438 2-96 (292)
121 PRK14619 NAD(P)H-dependent gly 97.6 0.00015 3.1E-09 78.1 8.2 79 347-437 3-84 (308)
122 PRK06545 prephenate dehydrogen 97.6 0.00013 2.9E-09 80.2 7.8 90 349-438 1-98 (359)
123 PLN00203 glutamyl-tRNA reducta 97.6 0.00022 4.8E-09 82.3 9.1 93 345-437 263-371 (519)
124 TIGR01316 gltA glutamate synth 97.5 0.0003 6.5E-09 79.5 9.5 116 266-381 130-305 (449)
125 cd05311 NAD_bind_2_malic_enz N 97.5 0.00075 1.6E-08 70.0 11.3 94 343-437 20-130 (226)
126 PRK06928 pyrroline-5-carboxyla 97.5 0.0012 2.5E-08 70.3 12.8 97 349-448 2-108 (277)
127 PRK14982 acyl-ACP reductase; P 97.5 0.00046 1E-08 75.7 9.8 95 341-438 148-249 (340)
128 TIGR00872 gnd_rel 6-phosphoglu 97.5 0.0002 4.4E-09 76.7 7.0 89 349-438 1-96 (298)
129 PRK11880 pyrroline-5-carboxyla 97.5 0.00081 1.7E-08 70.4 11.3 66 349-414 3-73 (267)
130 PRK08507 prephenate dehydrogen 97.5 0.00025 5.5E-09 74.9 7.6 87 349-437 1-93 (275)
131 PRK09260 3-hydroxybutyryl-CoA 97.5 0.00023 4.9E-09 75.7 7.3 89 349-437 2-120 (288)
132 cd05213 NAD_bind_Glutamyl_tRNA 97.5 0.00045 9.7E-09 74.7 9.6 92 346-437 176-275 (311)
133 PRK11199 tyrA bifunctional cho 97.5 0.0012 2.5E-08 73.4 12.9 78 347-438 97-178 (374)
134 TIGR01692 HIBADH 3-hydroxyisob 97.5 0.00025 5.3E-09 75.5 7.2 85 353-437 1-92 (288)
135 PLN02688 pyrroline-5-carboxyla 97.4 0.00039 8.5E-09 72.7 8.2 89 349-437 1-97 (266)
136 PRK12778 putative bifunctional 97.4 0.00039 8.4E-09 83.6 9.1 114 267-380 429-603 (752)
137 PRK07340 ornithine cyclodeamin 97.4 0.00082 1.8E-08 72.6 10.2 99 346-448 123-233 (304)
138 PRK12775 putative trifunctiona 97.4 0.0005 1.1E-08 85.2 9.6 111 267-377 428-601 (1006)
139 PRK09853 putative selenate red 97.4 0.00053 1.1E-08 84.3 9.4 115 267-381 537-703 (1019)
140 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.00071 1.5E-08 69.8 8.9 85 343-428 18-121 (217)
141 cd01078 NAD_bind_H4MPT_DH NADP 97.3 0.00085 1.8E-08 67.1 9.1 96 343-438 23-132 (194)
142 COG0373 HemA Glutamyl-tRNA red 97.3 0.00097 2.1E-08 74.8 10.1 93 345-437 175-276 (414)
143 PRK13302 putative L-aspartate 97.3 0.00049 1.1E-08 73.1 7.0 90 347-437 5-100 (271)
144 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.00052 1.1E-08 72.5 7.1 96 342-438 32-157 (254)
145 PRK07066 3-hydroxybutyryl-CoA 97.3 0.0005 1.1E-08 75.0 7.1 97 349-448 8-129 (321)
146 PRK07634 pyrroline-5-carboxyla 97.3 0.0025 5.4E-08 65.7 11.9 89 347-437 3-101 (245)
147 TIGR01470 cysG_Nterm siroheme 97.3 0.00045 9.7E-09 70.6 6.2 92 344-436 5-101 (205)
148 PRK08818 prephenate dehydrogen 97.3 0.0036 7.8E-08 69.6 13.6 84 347-441 3-94 (370)
149 PLN02858 fructose-bisphosphate 97.3 0.0007 1.5E-08 86.2 9.0 92 347-438 323-421 (1378)
150 TIGR03026 NDP-sugDHase nucleot 97.3 0.00073 1.6E-08 75.6 8.2 89 349-437 1-122 (411)
151 PRK07530 3-hydroxybutyryl-CoA 97.2 0.00071 1.5E-08 72.0 7.6 88 349-437 5-122 (292)
152 PRK08618 ornithine cyclodeamin 97.2 0.0018 4E-08 70.4 10.7 99 347-448 126-237 (325)
153 PRK12769 putative oxidoreducta 97.2 0.0011 2.4E-08 78.5 9.6 37 267-303 325-361 (654)
154 PRK00094 gpsA NAD(P)H-dependen 97.2 0.0008 1.7E-08 72.0 7.6 89 349-437 2-107 (325)
155 PF13241 NAD_binding_7: Putati 97.2 0.00025 5.3E-09 64.5 3.1 88 344-436 3-92 (103)
156 PLN02350 phosphogluconate dehy 97.2 0.00075 1.6E-08 77.5 7.7 88 350-438 8-110 (493)
157 PLN02858 fructose-bisphosphate 97.2 0.00081 1.8E-08 85.6 8.7 92 347-438 3-101 (1378)
158 TIGR03315 Se_ygfK putative sel 97.2 0.0011 2.5E-08 81.7 9.4 115 267-381 535-701 (1012)
159 PRK09414 glutamate dehydrogena 97.2 0.00083 1.8E-08 76.1 7.6 91 342-433 226-341 (445)
160 PRK07679 pyrroline-5-carboxyla 97.2 0.0018 3.9E-08 68.7 9.7 91 347-437 2-101 (279)
161 PRK06476 pyrroline-5-carboxyla 97.2 0.0014 3.1E-08 68.5 8.7 86 350-437 2-95 (258)
162 PF01210 NAD_Gly3P_dh_N: NAD-d 97.1 0.001 2.2E-08 64.9 6.8 88 350-437 1-105 (157)
163 PRK12814 putative NADPH-depend 97.1 0.0015 3.2E-08 77.5 9.5 114 267-380 191-356 (652)
164 PLN02477 glutamate dehydrogena 97.1 0.0011 2.5E-08 74.4 8.0 87 342-429 200-306 (410)
165 COG2085 Predicted dinucleotide 97.1 0.0016 3.4E-08 67.0 8.0 88 349-437 2-95 (211)
166 PTZ00142 6-phosphogluconate de 97.1 0.00093 2E-08 76.4 7.1 89 349-438 2-104 (470)
167 PRK06718 precorrin-2 dehydroge 97.1 0.00097 2.1E-08 68.0 6.5 91 344-436 6-101 (202)
168 TIGR02371 ala_DH_arch alanine 97.1 0.0027 5.8E-08 69.3 10.3 99 347-448 127-238 (325)
169 PF10727 Rossmann-like: Rossma 97.1 0.00057 1.2E-08 65.0 4.4 89 348-437 10-106 (127)
170 PRK11749 dihydropyrimidine deh 97.1 0.0019 4.2E-08 73.0 9.4 114 267-380 138-306 (457)
171 PRK14031 glutamate dehydrogena 97.1 0.0015 3.2E-08 74.1 8.2 93 342-435 222-342 (444)
172 PRK12810 gltD glutamate syntha 97.1 0.0019 4.2E-08 73.5 9.2 37 267-303 141-177 (471)
173 PRK14806 bifunctional cyclohex 97.1 0.0012 2.7E-08 78.9 8.0 90 349-438 4-100 (735)
174 TIGR01546 GAPDH-II_archae glyc 97.0 0.0023 5E-08 70.2 9.2 84 351-434 1-107 (333)
175 PRK00258 aroE shikimate 5-dehy 97.0 0.0017 3.6E-08 69.1 7.8 71 343-413 118-195 (278)
176 COG0287 TyrA Prephenate dehydr 97.0 0.0013 2.8E-08 70.5 6.9 99 348-448 3-110 (279)
177 PRK12809 putative oxidoreducta 97.0 0.0023 4.9E-08 75.8 9.5 37 267-303 308-344 (639)
178 COG0334 GdhA Glutamate dehydro 97.0 0.0018 4E-08 72.1 8.1 95 342-438 201-315 (411)
179 TIGR01317 GOGAT_sm_gam glutama 97.0 0.003 6.6E-08 72.3 9.8 36 267-302 141-176 (485)
180 PF00208 ELFV_dehydrog: Glutam 97.0 0.0013 2.9E-08 69.0 6.3 91 344-435 28-146 (244)
181 PRK06141 ornithine cyclodeamin 97.0 0.0039 8.4E-08 67.6 10.0 99 347-448 124-235 (314)
182 PRK13940 glutamyl-tRNA reducta 97.0 0.0025 5.5E-08 71.8 8.8 91 345-437 178-275 (414)
183 PRK07680 late competence prote 96.9 0.0018 3.9E-08 68.3 7.3 96 350-448 2-106 (273)
184 PRK08293 3-hydroxybutyryl-CoA 96.9 0.0024 5.1E-08 68.0 8.2 88 349-436 4-122 (287)
185 TIGR01318 gltD_gamma_fam gluta 96.9 0.0033 7.1E-08 71.7 9.6 37 267-303 139-175 (467)
186 PRK11064 wecC UDP-N-acetyl-D-m 96.9 0.0022 4.8E-08 72.1 7.9 88 349-437 4-121 (415)
187 PRK06129 3-hydroxyacyl-CoA deh 96.9 0.0027 5.9E-08 68.3 8.2 65 349-413 3-92 (308)
188 PRK07531 bifunctional 3-hydrox 96.9 0.0027 5.8E-08 73.0 8.6 88 349-436 5-117 (495)
189 PF02423 OCD_Mu_crystall: Orni 96.9 0.0038 8.3E-08 67.7 9.1 98 348-448 128-240 (313)
190 PRK14030 glutamate dehydrogena 96.9 0.0027 5.9E-08 71.9 8.2 89 343-432 223-340 (445)
191 PRK07819 3-hydroxybutyryl-CoA 96.8 0.0033 7.1E-08 67.3 8.2 87 349-437 6-123 (286)
192 PTZ00079 NADP-specific glutama 96.8 0.0028 6E-08 71.9 7.9 94 342-436 231-353 (454)
193 PRK08306 dipicolinate synthase 96.8 0.037 8E-07 59.7 16.3 102 347-453 1-117 (296)
194 PRK06035 3-hydroxyacyl-CoA deh 96.8 0.0036 7.9E-08 66.7 8.5 96 349-448 4-131 (291)
195 PRK06130 3-hydroxybutyryl-CoA 96.8 0.0033 7.2E-08 67.4 8.1 88 349-436 5-117 (311)
196 PRK12549 shikimate 5-dehydroge 96.8 0.0073 1.6E-07 64.7 10.6 68 345-412 124-201 (284)
197 TIGR02992 ectoine_eutC ectoine 96.8 0.0073 1.6E-07 65.9 10.7 99 347-448 128-240 (326)
198 TIGR00873 gnd 6-phosphoglucona 96.8 0.0032 7E-08 72.0 8.2 86 351-437 2-100 (467)
199 PRK08268 3-hydroxy-acyl-CoA de 96.8 0.0019 4E-08 74.6 6.3 89 349-438 8-126 (507)
200 PRK06719 precorrin-2 dehydroge 96.8 0.0033 7.2E-08 61.7 7.1 89 343-434 8-99 (157)
201 PLN02852 ferredoxin-NADP+ redu 96.8 0.0039 8.4E-08 71.8 8.6 38 267-304 24-63 (491)
202 PRK15182 Vi polysaccharide bio 96.7 0.0033 7.1E-08 71.1 7.7 89 348-438 6-123 (425)
203 PRK00779 ornithine carbamoyltr 96.7 0.04 8.7E-07 59.8 15.7 169 250-447 83-279 (304)
204 COG0569 TrkA K+ transport syst 96.7 0.0021 4.5E-08 66.6 5.5 66 349-414 1-77 (225)
205 PRK06046 alanine dehydrogenase 96.7 0.0081 1.8E-07 65.5 10.3 97 348-448 129-239 (326)
206 PLN02527 aspartate carbamoyltr 96.7 0.049 1.1E-06 59.2 16.0 170 249-447 80-278 (306)
207 TIGR00658 orni_carb_tr ornithi 96.7 0.041 8.8E-07 59.7 15.3 185 229-448 64-279 (304)
208 COG1064 AdhP Zn-dependent alco 96.7 0.0045 9.9E-08 67.9 7.8 89 347-437 166-261 (339)
209 PRK05808 3-hydroxybutyryl-CoA 96.7 0.0045 9.8E-08 65.6 7.6 87 349-436 4-120 (282)
210 KOG0409|consensus 96.7 0.0036 7.8E-08 67.3 6.7 67 347-413 34-101 (327)
211 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.6 0.005 1.1E-07 71.1 8.2 89 349-438 6-124 (503)
212 TIGR01915 npdG NADPH-dependent 96.6 0.0044 9.6E-08 63.5 7.0 88 349-437 1-103 (219)
213 PRK00856 pyrB aspartate carbam 96.6 0.044 9.6E-07 59.5 14.8 170 250-448 85-277 (305)
214 TIGR00670 asp_carb_tr aspartat 96.6 0.048 1E-06 59.1 15.1 171 249-448 79-276 (301)
215 PRK06522 2-dehydropantoate 2-r 96.6 0.0082 1.8E-07 63.5 8.8 86 349-437 1-102 (304)
216 PRK09880 L-idonate 5-dehydroge 96.6 0.0063 1.4E-07 65.8 8.0 91 346-437 168-268 (343)
217 PRK15057 UDP-glucose 6-dehydro 96.6 0.0077 1.7E-07 67.4 8.8 88 349-437 1-119 (388)
218 PTZ00431 pyrroline carboxylate 96.5 0.023 5E-07 59.8 11.7 61 347-413 2-67 (260)
219 COG1063 Tdh Threonine dehydrog 96.5 0.0059 1.3E-07 67.0 7.4 91 347-438 168-272 (350)
220 TIGR00507 aroE shikimate 5-deh 96.5 0.0093 2E-07 63.1 8.4 94 345-438 114-217 (270)
221 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.0037 8.1E-08 62.5 5.1 95 350-448 1-124 (180)
222 PRK06823 ornithine cyclodeamin 96.5 0.013 2.8E-07 63.9 9.6 100 347-449 127-239 (315)
223 PRK01713 ornithine carbamoyltr 96.4 0.065 1.4E-06 59.0 15.0 161 249-437 85-277 (334)
224 PRK12771 putative glutamate sy 96.4 0.011 2.5E-07 68.8 9.0 37 266-302 134-170 (564)
225 cd08230 glucose_DH Glucose deh 96.3 0.0079 1.7E-07 65.2 7.2 91 346-437 171-271 (355)
226 PRK13304 L-aspartate dehydroge 96.3 0.0074 1.6E-07 63.9 6.6 66 349-414 2-72 (265)
227 TIGR01202 bchC 2-desacetyl-2-h 96.3 0.0064 1.4E-07 65.0 6.2 89 346-437 143-233 (308)
228 PRK03515 ornithine carbamoyltr 96.3 0.081 1.8E-06 58.3 14.8 161 249-437 84-277 (336)
229 COG0493 GltD NADPH-dependent g 96.3 0.013 2.8E-07 67.0 8.8 112 266-377 120-292 (457)
230 KOG2380|consensus 96.3 0.0062 1.4E-07 66.3 5.9 100 347-448 51-155 (480)
231 PRK09310 aroDE bifunctional 3- 96.3 0.015 3.3E-07 66.7 9.4 71 343-413 327-400 (477)
232 PRK06407 ornithine cyclodeamin 96.3 0.023 4.9E-07 61.6 10.2 100 347-449 116-229 (301)
233 PRK03369 murD UDP-N-acetylmura 96.3 0.011 2.3E-07 68.0 8.1 67 346-412 10-79 (488)
234 TIGR02354 thiF_fam2 thiamine b 96.3 0.0064 1.4E-07 62.0 5.6 92 345-436 18-146 (200)
235 PRK02102 ornithine carbamoyltr 96.3 0.11 2.3E-06 57.3 15.4 160 249-437 85-275 (331)
236 PRK08229 2-dehydropantoate 2-r 96.3 0.011 2.4E-07 64.0 7.7 87 349-436 3-108 (341)
237 TIGR03316 ygeW probable carbam 96.3 0.11 2.4E-06 57.7 15.5 176 228-436 66-314 (357)
238 TIGR01724 hmd_rel H2-forming N 96.3 0.017 3.6E-07 63.1 8.9 78 360-438 32-119 (341)
239 PF02254 TrkA_N: TrkA-N domain 96.2 0.01 2.2E-07 54.0 6.2 63 351-413 1-72 (116)
240 PRK12562 ornithine carbamoyltr 96.2 0.11 2.4E-06 57.2 15.3 162 249-437 84-277 (334)
241 PLN02342 ornithine carbamoyltr 96.2 0.12 2.7E-06 57.1 15.7 170 249-447 124-321 (348)
242 PRK02255 putrescine carbamoylt 96.2 0.1 2.3E-06 57.5 14.9 186 229-447 67-286 (338)
243 PRK07251 pyridine nucleotide-d 96.2 0.025 5.5E-07 63.5 10.5 35 347-381 156-190 (438)
244 PRK07589 ornithine cyclodeamin 96.2 0.027 5.8E-07 62.2 10.4 99 347-448 128-241 (346)
245 PF00185 OTCace: Aspartate/orn 96.2 0.057 1.2E-06 53.1 11.5 102 347-448 1-135 (158)
246 COG2423 Predicted ornithine cy 96.2 0.027 5.9E-07 61.8 10.1 100 347-449 129-242 (330)
247 PRK08291 ectoine utilization p 96.1 0.03 6.6E-07 61.1 10.3 99 347-448 131-243 (330)
248 COG1712 Predicted dinucleotide 96.1 0.012 2.6E-07 61.1 6.7 89 349-438 1-96 (255)
249 cd05312 NAD_bind_1_malic_enz N 96.1 0.031 6.8E-07 59.9 10.0 106 342-447 19-154 (279)
250 COG0111 SerA Phosphoglycerate 96.1 0.02 4.3E-07 62.7 8.6 204 230-494 89-310 (324)
251 PRK01710 murD UDP-N-acetylmura 96.1 0.015 3.2E-07 66.1 8.0 67 346-412 12-86 (458)
252 PRK13814 pyrB aspartate carbam 96.1 0.12 2.6E-06 56.4 14.6 184 229-447 70-278 (310)
253 PRK12921 2-dehydropantoate 2-r 96.1 0.019 4.2E-07 60.9 8.3 87 349-436 1-103 (305)
254 PRK13984 putative oxidoreducta 96.1 0.018 3.9E-07 67.6 8.7 38 266-303 280-317 (604)
255 PRK04284 ornithine carbamoyltr 96.0 0.17 3.8E-06 55.6 15.2 159 250-436 85-275 (332)
256 PRK03659 glutathione-regulated 96.0 0.013 2.7E-07 69.1 6.9 103 348-452 400-513 (601)
257 cd00762 NAD_bind_malic_enz NAD 95.9 0.043 9.4E-07 58.1 9.9 106 342-447 19-155 (254)
258 COG3288 PntA NAD/NADP transhyd 95.9 0.0099 2.1E-07 64.1 5.2 94 343-436 159-282 (356)
259 TIGR03366 HpnZ_proposed putati 95.9 0.023 5E-07 59.7 8.0 89 347-436 120-219 (280)
260 PRK03562 glutathione-regulated 95.9 0.013 2.9E-07 69.2 6.8 103 348-452 400-513 (621)
261 KOG0023|consensus 95.9 0.019 4.1E-07 62.4 7.2 90 347-437 181-281 (360)
262 PRK15317 alkyl hydroperoxide r 95.9 0.056 1.2E-06 62.4 11.5 37 346-382 349-385 (517)
263 PRK11891 aspartate carbamoyltr 95.8 0.23 5.1E-06 56.4 15.9 171 249-446 166-371 (429)
264 COG0771 MurD UDP-N-acetylmuram 95.8 0.016 3.5E-07 65.9 6.7 67 346-412 5-78 (448)
265 PRK00676 hemA glutamyl-tRNA re 95.8 0.031 6.7E-07 61.6 8.6 88 345-437 171-263 (338)
266 PRK04523 N-acetylornithine car 95.7 0.67 1.4E-05 51.2 18.6 169 250-448 90-309 (335)
267 PTZ00117 malate dehydrogenase; 95.7 0.051 1.1E-06 59.2 9.9 90 346-436 3-123 (319)
268 COG2072 TrkA Predicted flavopr 95.7 0.033 7.1E-07 63.3 8.8 39 344-382 171-209 (443)
269 PLN02586 probable cinnamyl alc 95.7 0.031 6.7E-07 61.3 8.3 91 346-437 182-280 (360)
270 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.018 4E-07 57.9 6.0 88 349-437 1-122 (185)
271 TIGR01292 TRX_reduct thioredox 95.7 0.031 6.7E-07 58.2 7.9 36 346-381 139-174 (300)
272 PRK12862 malic enzyme; Reviewe 95.7 0.045 9.7E-07 66.2 10.1 103 342-447 187-304 (763)
273 PRK12861 malic enzyme; Reviewe 95.7 0.042 9.2E-07 66.2 9.7 103 342-447 183-300 (764)
274 COG1648 CysG Siroheme synthase 95.7 0.016 3.4E-07 59.8 5.3 91 344-436 8-104 (210)
275 PRK00066 ldh L-lactate dehydro 95.6 0.05 1.1E-06 59.3 9.4 92 346-437 4-124 (315)
276 PRK06199 ornithine cyclodeamin 95.6 0.054 1.2E-06 60.6 9.8 96 347-447 154-269 (379)
277 TIGR01921 DAP-DH diaminopimela 95.6 0.032 6.8E-07 61.1 7.8 85 349-434 4-90 (324)
278 PRK05562 precorrin-2 dehydroge 95.6 0.017 3.7E-07 60.1 5.4 91 343-434 20-115 (223)
279 TIGR01809 Shik-DH-AROM shikima 95.6 0.048 1E-06 58.4 8.9 69 345-413 122-200 (282)
280 TIGR03201 dearomat_had 6-hydro 95.6 0.028 6E-07 61.0 7.1 92 346-438 165-275 (349)
281 PRK07200 aspartate/ornithine c 95.5 0.45 9.7E-06 53.7 16.6 120 294-436 154-331 (395)
282 PRK07232 bifunctional malic en 95.5 0.076 1.6E-06 64.1 11.0 105 342-447 179-296 (752)
283 COG0026 PurK Phosphoribosylami 95.5 0.034 7.3E-07 61.5 7.4 77 348-427 1-83 (375)
284 TIGR01424 gluta_reduc_2 glutat 95.5 0.08 1.7E-06 59.8 10.7 35 347-381 165-199 (446)
285 cd08237 ribitol-5-phosphate_DH 95.5 0.039 8.4E-07 59.9 7.8 89 347-437 163-258 (341)
286 cd05291 HicDH_like L-2-hydroxy 95.5 0.026 5.6E-07 60.9 6.4 87 349-436 1-118 (306)
287 PLN02740 Alcohol dehydrogenase 95.5 0.037 8E-07 60.9 7.7 91 346-437 197-302 (381)
288 TIGR02853 spore_dpaA dipicolin 95.5 0.06 1.3E-06 57.9 9.0 63 246-308 128-190 (287)
289 PRK10669 putative cation:proto 95.4 0.025 5.4E-07 65.9 6.6 102 349-452 418-530 (558)
290 TIGR01421 gluta_reduc_1 glutat 95.4 0.072 1.6E-06 60.4 10.1 34 348-381 166-199 (450)
291 TIGR03143 AhpF_homolog putativ 95.4 0.04 8.7E-07 64.3 8.2 36 346-381 141-176 (555)
292 PRK12770 putative glutamate sy 95.4 0.025 5.5E-07 61.7 6.2 38 266-303 15-52 (352)
293 PRK14106 murD UDP-N-acetylmura 95.4 0.042 9E-07 61.9 8.1 68 345-412 2-77 (450)
294 PRK12548 shikimate 5-dehydroge 95.4 0.095 2.1E-06 56.3 10.4 37 345-381 123-160 (289)
295 PRK01390 murD UDP-N-acetylmura 95.4 0.033 7.2E-07 63.1 7.3 66 346-411 7-73 (460)
296 PF03949 Malic_M: Malic enzyme 95.4 0.058 1.3E-06 57.3 8.4 107 342-448 19-156 (255)
297 COG5322 Predicted dehydrogenas 95.4 0.033 7.2E-07 59.3 6.5 95 341-438 160-264 (351)
298 PRK12557 H(2)-dependent methyl 95.4 0.066 1.4E-06 59.1 9.2 78 360-438 32-119 (342)
299 TIGR02356 adenyl_thiF thiazole 95.4 0.022 4.9E-07 57.9 5.2 37 345-381 18-55 (202)
300 PRK05249 soluble pyridine nucl 95.3 0.077 1.7E-06 59.9 9.9 35 347-381 174-208 (461)
301 PF01408 GFO_IDH_MocA: Oxidore 95.3 0.047 1E-06 49.7 6.7 64 350-413 2-72 (120)
302 PRK06370 mercuric reductase; V 95.3 0.096 2.1E-06 59.4 10.6 35 347-381 170-204 (463)
303 TIGR02822 adh_fam_2 zinc-bindi 95.3 0.04 8.7E-07 59.5 7.2 90 346-436 164-255 (329)
304 PRK10637 cysG siroheme synthas 95.3 0.038 8.2E-07 63.1 7.3 92 344-436 8-104 (457)
305 PRK12749 quinate/shikimate deh 95.3 0.15 3.2E-06 55.0 11.4 39 344-382 120-159 (288)
306 PLN02178 cinnamyl-alcohol dehy 95.3 0.053 1.1E-06 60.0 8.2 90 347-437 178-275 (375)
307 PRK13301 putative L-aspartate 95.2 0.05 1.1E-06 58.0 7.3 87 349-437 3-97 (267)
308 COG0540 PyrB Aspartate carbamo 95.2 0.24 5.2E-06 53.8 12.5 183 228-444 70-283 (316)
309 KOG0024|consensus 95.2 0.041 8.9E-07 60.0 6.8 101 343-444 165-282 (354)
310 TIGR03140 AhpF alkyl hydropero 95.2 0.057 1.2E-06 62.4 8.5 35 347-381 351-385 (515)
311 cd08239 THR_DH_like L-threonin 95.2 0.04 8.7E-07 59.0 6.8 91 346-437 162-264 (339)
312 PRK14804 ornithine carbamoyltr 95.2 0.58 1.3E-05 51.1 15.6 152 270-447 98-284 (311)
313 cd08281 liver_ADH_like1 Zinc-d 95.2 0.047 1E-06 59.7 7.4 90 347-437 191-292 (371)
314 PRK09754 phenylpropionate diox 95.2 0.046 1E-06 60.6 7.3 35 347-381 143-177 (396)
315 PRK07574 formate dehydrogenase 95.2 0.043 9.3E-07 61.5 7.0 190 266-513 189-381 (385)
316 PTZ00082 L-lactate dehydrogena 95.2 0.1 2.2E-06 57.1 9.7 66 346-412 4-83 (321)
317 PRK00683 murD UDP-N-acetylmura 95.2 0.052 1.1E-06 60.9 7.7 66 347-413 2-69 (418)
318 TIGR03451 mycoS_dep_FDH mycoth 95.2 0.052 1.1E-06 59.0 7.6 91 346-437 175-278 (358)
319 PRK06249 2-dehydropantoate 2-r 95.1 0.081 1.8E-06 57.1 8.9 88 348-437 5-108 (313)
320 PRK02472 murD UDP-N-acetylmura 95.1 0.053 1.1E-06 61.0 7.8 67 345-411 2-76 (447)
321 PRK06116 glutathione reductase 95.1 0.11 2.5E-06 58.5 10.4 34 348-381 167-200 (450)
322 PRK00141 murD UDP-N-acetylmura 95.1 0.053 1.1E-06 62.0 7.8 68 345-412 12-83 (473)
323 PRK12475 thiamine/molybdopteri 95.1 0.029 6.2E-07 61.8 5.3 37 345-381 21-58 (338)
324 PRK00421 murC UDP-N-acetylmura 95.1 0.054 1.2E-06 61.5 7.7 67 346-412 5-75 (461)
325 PRK09496 trkA potassium transp 95.1 0.039 8.5E-07 61.9 6.4 65 349-413 1-75 (453)
326 COG0281 SfcA Malic enzyme [Ene 95.0 0.11 2.4E-06 58.4 9.7 105 341-448 192-313 (432)
327 PRK04690 murD UDP-N-acetylmura 95.0 0.046 1E-06 62.4 6.9 67 346-412 6-78 (468)
328 KOG4230|consensus 95.0 0.054 1.2E-06 62.4 7.2 78 343-436 157-235 (935)
329 COG0169 AroE Shikimate 5-dehyd 95.0 0.13 2.9E-06 55.4 9.8 68 345-412 123-199 (283)
330 PRK08010 pyridine nucleotide-d 94.9 0.14 3.1E-06 57.6 10.4 35 347-381 157-191 (441)
331 PRK10262 thioredoxin reductase 94.9 0.076 1.7E-06 57.0 7.8 36 346-381 144-179 (321)
332 PRK06019 phosphoribosylaminoim 94.8 0.076 1.6E-06 58.8 7.9 78 348-428 2-85 (372)
333 KOG0399|consensus 94.8 0.051 1.1E-06 66.7 6.7 124 256-382 1771-1959(2142)
334 COG1748 LYS9 Saccharopine dehy 94.8 0.054 1.2E-06 60.7 6.6 87 349-437 2-101 (389)
335 cd05292 LDH_2 A subgroup of L- 94.8 0.04 8.7E-07 59.6 5.4 64 349-413 1-77 (308)
336 PF00056 Ldh_1_N: lactate/mala 94.8 0.023 5.1E-07 54.7 3.2 65 349-413 1-79 (141)
337 PRK05976 dihydrolipoamide dehy 94.8 0.088 1.9E-06 59.9 8.4 34 348-381 180-213 (472)
338 PF00899 ThiF: ThiF family; I 94.7 0.027 5.8E-07 53.3 3.4 36 348-383 2-38 (135)
339 PRK15116 sulfur acceptor prote 94.6 0.061 1.3E-06 57.5 6.2 38 345-382 27-65 (268)
340 PRK04308 murD UDP-N-acetylmura 94.6 0.1 2.2E-06 59.0 8.2 68 345-412 2-76 (445)
341 PRK03806 murD UDP-N-acetylmura 94.6 0.15 3.3E-06 57.4 9.6 67 346-412 4-74 (438)
342 COG1052 LdhA Lactate dehydroge 94.6 0.13 2.8E-06 56.4 8.8 195 225-477 84-300 (324)
343 PRK06912 acoL dihydrolipoamide 94.6 0.11 2.4E-06 58.9 8.5 34 348-381 170-203 (458)
344 TIGR02825 B4_12hDH leukotriene 94.6 0.1 2.2E-06 55.7 7.7 90 346-437 137-239 (325)
345 PRK04148 hypothetical protein; 94.6 0.068 1.5E-06 51.6 5.7 40 347-387 16-55 (134)
346 PRK06416 dihydrolipoamide dehy 94.5 0.18 3.9E-06 57.0 10.1 34 348-381 172-205 (462)
347 PRK04965 NADH:flavorubredoxin 94.5 0.16 3.5E-06 55.8 9.5 35 347-381 140-174 (377)
348 PRK02006 murD UDP-N-acetylmura 94.5 0.085 1.8E-06 60.6 7.5 67 346-412 5-78 (498)
349 PLN02827 Alcohol dehydrogenase 94.5 0.097 2.1E-06 57.8 7.7 91 346-437 192-297 (378)
350 PRK01438 murD UDP-N-acetylmura 94.5 0.083 1.8E-06 60.1 7.4 70 343-412 11-87 (480)
351 PRK12439 NAD(P)H-dependent gly 94.5 0.079 1.7E-06 58.1 6.9 88 349-437 8-113 (341)
352 TIGR02818 adh_III_F_hyde S-(hy 94.5 0.089 1.9E-06 57.7 7.3 90 346-436 184-288 (368)
353 cd00757 ThiF_MoeB_HesA_family 94.5 0.053 1.1E-06 56.1 5.1 38 345-382 18-56 (228)
354 PRK14805 ornithine carbamoyltr 94.4 0.9 2E-05 49.5 14.6 169 249-448 77-276 (302)
355 PLN02546 glutathione reductase 94.4 0.12 2.6E-06 60.6 8.3 35 347-381 251-285 (558)
356 PLN02514 cinnamyl-alcohol dehy 94.4 0.11 2.4E-06 56.7 7.7 91 346-437 179-277 (357)
357 PRK08192 aspartate carbamoyltr 94.3 0.85 1.9E-05 50.4 14.4 175 249-448 84-292 (338)
358 KOG0022|consensus 94.3 0.13 2.7E-06 56.2 7.6 96 346-442 191-303 (375)
359 PRK10309 galactitol-1-phosphat 94.3 0.11 2.4E-06 56.1 7.4 91 346-437 159-262 (347)
360 TIGR01350 lipoamide_DH dihydro 94.3 0.14 3E-06 57.8 8.5 35 347-381 169-203 (461)
361 PRK14620 NAD(P)H-dependent gly 94.3 0.11 2.4E-06 56.2 7.3 88 350-437 2-108 (326)
362 PRK08644 thiamine biosynthesis 94.2 0.065 1.4E-06 55.1 5.1 37 345-381 25-62 (212)
363 PRK09564 coenzyme A disulfide 94.2 0.17 3.7E-06 56.7 8.8 35 347-381 148-182 (444)
364 TIGR02374 nitri_red_nirB nitri 94.1 0.14 3E-06 62.4 8.4 36 347-382 139-174 (785)
365 TIGR01763 MalateDH_bact malate 94.0 0.11 2.4E-06 56.3 6.8 88 349-437 2-120 (305)
366 TIGR02053 MerA mercuric reduct 94.0 0.24 5.3E-06 56.1 9.8 34 348-381 166-199 (463)
367 PRK01368 murD UDP-N-acetylmura 94.0 0.12 2.7E-06 58.9 7.5 65 347-412 5-72 (454)
368 TIGR02819 fdhA_non_GSH formald 94.0 0.18 3.8E-06 56.3 8.4 91 346-437 184-301 (393)
369 PRK14989 nitrite reductase sub 94.0 0.18 3.9E-06 62.0 9.1 36 347-382 144-179 (847)
370 PLN03154 putative allyl alcoho 94.0 0.16 3.4E-06 55.5 7.8 90 346-437 157-260 (348)
371 cd08301 alcohol_DH_plants Plan 93.9 0.15 3.3E-06 55.6 7.7 91 346-437 186-291 (369)
372 PRK09496 trkA potassium transp 93.9 0.11 2.3E-06 58.5 6.6 69 345-413 228-307 (453)
373 PRK04207 glyceraldehyde-3-phos 93.9 0.22 4.8E-06 54.9 8.9 66 349-414 2-89 (341)
374 PRK07688 thiamine/molybdopteri 93.9 0.075 1.6E-06 58.5 5.2 37 345-381 21-58 (339)
375 cd08277 liver_alcohol_DH_like 93.9 0.16 3.4E-06 55.5 7.7 92 345-437 182-288 (365)
376 cd05293 LDH_1 A subgroup of L- 93.9 0.36 7.8E-06 52.6 10.2 88 349-437 4-122 (312)
377 PRK03803 murD UDP-N-acetylmura 93.8 0.17 3.7E-06 57.2 8.0 66 347-412 5-77 (448)
378 PF00070 Pyr_redox: Pyridine n 93.8 0.12 2.5E-06 44.5 5.2 33 350-382 1-33 (80)
379 cd08300 alcohol_DH_class_III c 93.8 0.17 3.8E-06 55.3 7.8 91 346-437 185-290 (368)
380 PF03720 UDPG_MGDP_dh_C: UDP-g 93.8 0.3 6.5E-06 44.7 8.1 73 360-434 19-100 (106)
381 cd08293 PTGR2 Prostaglandin re 93.8 0.2 4.4E-06 53.6 8.2 87 348-436 155-255 (345)
382 PRK05690 molybdopterin biosynt 93.8 0.091 2E-06 55.2 5.3 39 344-382 28-67 (245)
383 KOG0089|consensus 93.8 0.14 3E-06 54.6 6.5 92 340-437 158-250 (309)
384 PRK14027 quinate/shikimate deh 93.8 0.24 5.3E-06 53.3 8.6 40 345-384 124-164 (283)
385 PF02826 2-Hacid_dh_C: D-isome 93.8 0.069 1.5E-06 53.1 4.2 43 264-306 31-73 (178)
386 PRK00048 dihydrodipicolinate r 93.8 0.1 2.3E-06 55.0 5.7 64 349-412 2-69 (257)
387 TIGR01470 cysG_Nterm siroheme 93.7 0.2 4.2E-06 51.4 7.5 95 265-378 5-101 (205)
388 cd00755 YgdL_like Family of ac 93.7 0.11 2.4E-06 54.3 5.6 38 345-382 8-46 (231)
389 PRK12769 putative oxidoreducta 93.7 0.22 4.8E-06 59.2 8.9 37 346-382 325-361 (654)
390 PRK08223 hypothetical protein; 93.6 0.11 2.4E-06 56.0 5.7 38 345-382 24-62 (287)
391 COG0677 WecC UDP-N-acetyl-D-ma 93.6 0.12 2.5E-06 57.9 5.9 88 349-436 10-129 (436)
392 COG1023 Gnd Predicted 6-phosph 93.6 0.1 2.2E-06 54.9 5.2 89 349-438 1-97 (300)
393 cd05188 MDR Medium chain reduc 93.5 0.31 6.7E-06 49.3 8.6 92 346-438 133-235 (271)
394 cd00300 LDH_like L-lactate deh 93.5 0.28 6E-06 53.0 8.7 85 351-436 1-116 (300)
395 TIGR03026 NDP-sugDHase nucleot 93.5 0.27 5.9E-06 55.2 8.9 85 345-433 310-408 (411)
396 TIGR02355 moeB molybdopterin s 93.5 0.1 2.3E-06 54.7 5.1 39 345-383 21-60 (240)
397 cd01075 NAD_bind_Leu_Phe_Val_D 93.5 0.11 2.3E-06 53.1 5.0 42 264-305 23-64 (200)
398 PRK12809 putative oxidoreducta 93.4 0.24 5.1E-06 58.9 8.6 37 346-382 308-344 (639)
399 PRK08762 molybdopterin biosynt 93.3 0.11 2.3E-06 57.9 5.2 37 345-381 132-169 (376)
400 PRK06223 malate dehydrogenase; 93.3 0.19 4.2E-06 53.9 7.0 63 349-412 3-79 (307)
401 PRK15438 erythronate-4-phospha 93.3 0.092 2E-06 58.8 4.6 69 228-300 79-147 (378)
402 cd08255 2-desacetyl-2-hydroxye 93.3 0.2 4.4E-06 51.8 6.8 91 346-437 96-192 (277)
403 PTZ00345 glycerol-3-phosphate 93.2 0.22 4.8E-06 55.5 7.5 88 348-437 11-131 (365)
404 TIGR01318 gltD_gamma_fam gluta 93.2 0.28 6.1E-06 56.1 8.5 36 346-381 139-174 (467)
405 TIGR03376 glycerol3P_DH glycer 93.2 0.25 5.5E-06 54.5 7.8 88 350-437 1-118 (342)
406 PRK05086 malate dehydrogenase; 93.2 0.4 8.8E-06 52.2 9.2 88 349-436 1-119 (312)
407 PRK02705 murD UDP-N-acetylmura 93.1 0.72 1.6E-05 52.2 11.5 33 350-382 2-34 (459)
408 COG1004 Ugd Predicted UDP-gluc 93.1 0.32 7E-06 54.5 8.4 66 346-413 308-386 (414)
409 TIGR01161 purK phosphoribosyla 93.1 0.21 4.6E-06 54.6 7.0 61 350-410 1-67 (352)
410 PRK12550 shikimate 5-dehydroge 93.1 0.46 9.9E-06 50.9 9.4 63 348-412 122-187 (272)
411 cd08296 CAD_like Cinnamyl alco 93.1 0.34 7.4E-06 52.0 8.5 90 347-437 163-261 (333)
412 PLN02948 phosphoribosylaminoim 93.1 0.28 6E-06 57.9 8.3 67 346-412 20-92 (577)
413 cd00650 LDH_MDH_like NAD-depen 93.1 0.31 6.8E-06 51.3 8.0 62 351-412 1-79 (263)
414 TIGR01087 murD UDP-N-acetylmur 92.8 0.26 5.6E-06 55.4 7.4 63 350-412 1-71 (433)
415 cd08295 double_bond_reductase_ 92.8 0.33 7.1E-06 52.2 7.9 90 346-437 150-253 (338)
416 PF02558 ApbA: Ketopantoate re 92.8 0.17 3.7E-06 48.2 5.0 31 351-381 1-31 (151)
417 cd01339 LDH-like_MDH L-lactate 92.8 0.44 9.6E-06 51.2 8.8 61 351-412 1-75 (300)
418 PRK05600 thiamine biosynthesis 92.7 0.17 3.7E-06 56.4 5.7 37 345-381 38-75 (370)
419 PLN02353 probable UDP-glucose 92.7 0.26 5.6E-06 56.8 7.3 89 349-437 2-129 (473)
420 PLN02520 bifunctional 3-dehydr 92.7 0.25 5.4E-06 57.6 7.2 40 344-383 375-414 (529)
421 TIGR02437 FadB fatty oxidation 92.7 0.25 5.5E-06 59.6 7.4 96 349-448 314-438 (714)
422 PF00107 ADH_zinc_N: Zinc-bind 92.6 0.098 2.1E-06 48.1 3.1 80 358-438 1-92 (130)
423 PRK08300 acetaldehyde dehydrog 92.6 0.34 7.3E-06 52.8 7.6 85 348-434 4-100 (302)
424 PRK11730 fadB multifunctional 92.6 0.24 5.2E-06 59.8 7.2 87 349-436 314-429 (715)
425 smart00859 Semialdhyde_dh Semi 92.6 0.2 4.3E-06 46.4 5.2 87 350-436 1-100 (122)
426 PRK11579 putative oxidoreducta 92.6 0.32 7E-06 53.1 7.6 64 349-413 5-74 (346)
427 cd05297 GH4_alpha_glucosidase_ 92.6 0.81 1.8E-05 51.9 10.9 64 350-413 2-84 (423)
428 PRK10083 putative oxidoreducta 92.6 0.33 7.2E-06 51.8 7.5 91 346-437 159-261 (339)
429 COG0540 PyrB Aspartate carbamo 92.5 1.6 3.5E-05 47.6 12.4 65 525-592 147-213 (316)
430 PF04016 DUF364: Domain of unk 92.5 0.27 6E-06 47.9 6.1 99 346-451 9-110 (147)
431 COG1004 Ugd Predicted UDP-gluc 92.5 0.29 6.2E-06 54.9 6.9 88 349-436 1-121 (414)
432 cd08299 alcohol_DH_class_I_II_ 92.4 0.44 9.5E-06 52.5 8.3 93 345-437 188-294 (373)
433 PRK05597 molybdopterin biosynt 92.4 0.19 4E-06 55.8 5.3 37 345-381 25-62 (355)
434 PRK13303 L-aspartate dehydroge 92.3 0.42 9E-06 50.8 7.7 86 349-435 2-94 (265)
435 cd08233 butanediol_DH_like (2R 92.3 0.47 1E-05 51.2 8.3 91 346-437 171-274 (351)
436 COG1062 AdhC Zn-dependent alco 92.3 0.72 1.6E-05 51.0 9.6 99 345-444 183-296 (366)
437 cd08234 threonine_DH_like L-th 92.3 0.24 5.2E-06 52.6 5.9 92 346-438 158-260 (334)
438 COG0240 GpsA Glycerol-3-phosph 92.2 0.41 8.9E-06 52.6 7.7 87 349-437 2-107 (329)
439 PRK00257 erythronate-4-phospha 92.2 0.15 3.2E-06 57.2 4.3 69 228-300 79-147 (381)
440 PF00070 Pyr_redox: Pyridine n 92.2 0.13 2.8E-06 44.1 3.2 34 271-304 1-34 (80)
441 TIGR02440 FadJ fatty oxidation 92.2 0.2 4.4E-06 60.3 5.8 85 349-434 305-419 (699)
442 cd08285 NADP_ADH NADP(H)-depen 92.2 0.47 1E-05 51.2 8.1 92 346-438 165-269 (351)
443 cd05283 CAD1 Cinnamyl alcohol 92.2 0.55 1.2E-05 50.5 8.6 91 346-437 168-265 (337)
444 cd08294 leukotriene_B4_DH_like 92.1 0.47 1E-05 50.2 7.9 89 346-436 142-242 (329)
445 PRK12742 oxidoreductase; Provi 92.1 0.72 1.6E-05 46.4 8.9 35 345-379 3-38 (237)
446 KOG0068|consensus 92.1 0.21 4.6E-06 54.9 5.2 36 265-300 142-177 (406)
447 cd01487 E1_ThiF_like E1_ThiF_l 92.1 0.49 1.1E-05 47.2 7.5 32 350-381 1-33 (174)
448 PRK11064 wecC UDP-N-acetyl-D-m 92.0 0.56 1.2E-05 53.0 8.8 71 343-414 315-397 (415)
449 cd08278 benzyl_alcohol_DH Benz 92.0 0.58 1.3E-05 51.1 8.7 91 346-437 185-287 (365)
450 PRK12771 putative glutamate sy 92.0 0.33 7.1E-06 56.7 7.1 37 345-381 134-170 (564)
451 PF03435 Saccharop_dh: Sacchar 92.0 0.29 6.4E-06 54.1 6.5 63 351-413 1-77 (386)
452 PLN03139 formate dehydrogenase 92.0 6.3 0.00014 44.5 16.9 81 365-455 69-149 (386)
453 cd01336 MDH_cytoplasmic_cytoso 92.0 0.59 1.3E-05 51.2 8.7 88 349-436 3-129 (325)
454 cd08291 ETR_like_1 2-enoyl thi 92.0 0.7 1.5E-05 49.3 9.1 89 347-437 142-244 (324)
455 PRK13529 malate dehydrogenase; 92.0 0.82 1.8E-05 53.6 10.1 105 342-446 289-430 (563)
456 TIGR02441 fa_ox_alpha_mit fatt 91.9 0.25 5.4E-06 59.9 6.2 87 349-436 336-452 (737)
457 PF01113 DapB_N: Dihydrodipico 91.9 0.32 7E-06 45.7 5.7 62 350-411 2-75 (124)
458 PLN03129 NADP-dependent malic 91.9 0.64 1.4E-05 54.6 9.1 105 342-446 315-449 (581)
459 PF13460 NAD_binding_10: NADH( 91.9 0.48 1E-05 46.0 7.0 60 351-412 1-69 (183)
460 COG0078 ArgF Ornithine carbamo 91.8 2.4 5.3E-05 46.2 12.7 171 247-446 81-283 (310)
461 PRK03815 murD UDP-N-acetylmura 91.8 0.41 8.9E-06 53.9 7.3 61 349-412 1-63 (401)
462 cd08231 MDR_TM0436_like Hypoth 91.8 0.45 9.7E-06 51.6 7.4 90 347-437 177-282 (361)
463 PRK09424 pntA NAD(P) transhydr 91.6 0.28 6.2E-06 56.9 5.9 46 267-312 163-208 (509)
464 PRK12814 putative NADPH-depend 91.6 0.58 1.3E-05 55.9 8.6 36 346-381 191-226 (652)
465 cd08242 MDR_like Medium chain 91.5 0.41 8.8E-06 50.7 6.6 90 346-436 154-246 (319)
466 PRK05472 redox-sensing transcr 91.5 0.26 5.7E-06 50.4 5.0 66 347-413 83-156 (213)
467 PTZ00325 malate dehydrogenase; 91.5 0.25 5.5E-06 54.1 5.1 67 346-413 6-86 (321)
468 PLN00106 malate dehydrogenase 91.5 0.25 5.4E-06 54.2 5.0 91 347-437 17-137 (323)
469 cd08270 MDR4 Medium chain dehy 91.4 0.65 1.4E-05 48.5 8.0 89 347-437 132-224 (305)
470 TIGR01758 MDH_euk_cyt malate d 91.4 0.5 1.1E-05 51.8 7.3 87 350-436 1-126 (324)
471 PRK11154 fadJ multifunctional 91.3 0.39 8.5E-06 57.9 7.0 96 349-448 310-435 (708)
472 PRK07411 hypothetical protein; 91.3 0.27 5.8E-06 55.2 5.2 37 345-381 35-72 (390)
473 cd08289 MDR_yhfp_like Yhfp put 91.3 0.66 1.4E-05 49.0 7.9 88 347-436 146-244 (326)
474 PRK04148 hypothetical protein; 91.2 2.7 5.8E-05 40.7 11.2 37 268-305 16-52 (134)
475 PLN02602 lactate dehydrogenase 91.2 0.5 1.1E-05 52.4 7.1 87 349-436 38-155 (350)
476 cd08292 ETR_like_2 2-enoyl thi 91.2 0.93 2E-05 47.7 8.9 89 346-436 138-239 (324)
477 PRK08410 2-hydroxyacid dehydro 91.2 0.19 4E-06 54.7 3.6 187 228-477 84-295 (311)
478 PRK14851 hypothetical protein; 91.0 0.29 6.2E-06 58.8 5.4 37 345-381 40-77 (679)
479 PRK07878 molybdopterin biosynt 91.0 0.3 6.5E-06 54.8 5.2 37 345-381 39-76 (392)
480 COG3634 AhpF Alkyl hydroperoxi 90.9 0.38 8.3E-06 53.2 5.6 40 343-382 349-388 (520)
481 KOG0024|consensus 90.9 0.33 7.1E-06 53.2 5.1 47 257-305 160-207 (354)
482 TIGR01372 soxA sarcosine oxida 90.9 0.4 8.7E-06 59.9 6.6 36 269-304 163-198 (985)
483 PRK04663 murD UDP-N-acetylmura 90.9 0.8 1.7E-05 51.8 8.5 67 346-412 4-77 (438)
484 PF02153 PDH: Prephenate dehyd 90.8 0.87 1.9E-05 48.1 8.2 77 363-439 1-83 (258)
485 cd00704 MDH Malate dehydrogena 90.8 0.31 6.8E-06 53.4 5.0 87 350-436 2-127 (323)
486 cd08269 Zn_ADH9 Alcohol dehydr 90.7 0.69 1.5E-05 48.3 7.3 91 346-437 128-231 (312)
487 TIGR01772 MDH_euk_gproteo mala 90.6 0.59 1.3E-05 51.1 6.9 88 350-437 1-118 (312)
488 cd08245 CAD Cinnamyl alcohol d 90.5 0.65 1.4E-05 49.3 7.1 90 346-436 161-257 (330)
489 cd08284 FDH_like_2 Glutathione 90.5 0.75 1.6E-05 49.2 7.5 92 346-438 166-269 (344)
490 TIGR01850 argC N-acetyl-gamma- 90.4 0.65 1.4E-05 51.3 7.1 85 349-435 1-99 (346)
491 PRK12480 D-lactate dehydrogena 90.4 0.32 6.9E-06 53.4 4.6 89 214-303 77-180 (330)
492 PRK05708 2-dehydropantoate 2-r 90.4 0.47 1E-05 51.2 5.9 86 349-435 3-104 (305)
493 TIGR02964 xanthine_xdhC xanthi 90.4 0.75 1.6E-05 48.6 7.2 34 349-382 101-134 (246)
494 PF07991 IlvN: Acetohydroxy ac 90.4 0.25 5.4E-06 49.3 3.4 50 267-316 2-52 (165)
495 PRK07877 hypothetical protein; 90.4 0.31 6.7E-06 58.8 4.8 36 345-381 104-141 (722)
496 PF01118 Semialdhyde_dh: Semia 90.3 0.22 4.7E-06 46.4 2.8 85 350-436 1-98 (121)
497 cd08246 crotonyl_coA_red croto 90.2 0.73 1.6E-05 50.7 7.3 89 346-436 192-316 (393)
498 PRK05562 precorrin-2 dehydroge 90.2 1.4 3E-05 46.1 8.9 94 266-378 22-117 (223)
499 PRK06444 prephenate dehydrogen 90.2 0.48 1E-05 48.5 5.4 62 349-439 1-63 (197)
500 PRK14573 bifunctional D-alanyl 90.0 0.69 1.5E-05 56.6 7.5 64 349-412 5-72 (809)
No 1
>KOG1370|consensus
Probab=100.00 E-value=4.7e-142 Score=1095.70 Aligned_cols=424 Identities=79% Similarity=1.227 Sum_probs=405.6
Q ss_pred CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA 80 (718)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~ 80 (718)
++||++|+||||+|+.||+|||+||++|++|+++|||||+||++|+|||+|||||||||.++||||+|+|||+||||||+
T Consensus 10 v~~i~~aafGRkeieiAE~eMPglma~r~r~~~skPlkgArI~GClH~tvqTAVLiETLv~LGAev~WssCNIfSTQdha 89 (434)
T KOG1370|consen 10 VKDISQAAFGRKEIEIAENEMPGLMALRKRYGPSKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHA 89 (434)
T ss_pred eeechhhhhchhhhhhhhhhcchHHHHHHHhccCCCCCCCeeeeeeeeehhHHHHHHHHHHhCceeeeeecceecchhHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896 81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM 160 (718)
Q Consensus 81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~ 160 (718)
||||++.|+|||||+|||+|||||||++++.. +++|||||+|||||+|+++|+|||+++..|+|+||||||||||||+|
T Consensus 90 AAAiA~~g~Pvfawkget~ee~~wcie~~~~~-~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGVH~Lykm 168 (434)
T KOG1370|consen 90 AAAIAEAGVPVFAWKGETEEEYWWCIERCLNK-DGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGVHNLYKM 168 (434)
T ss_pred HHHHHhcCCceeeeccccchhhhhhhhhhhcc-CCCCcceeecCCCchhhhhhhhhHHHHhhhcccchhhhhhHHHHHHH
Confidence 99999999999999999999999999999984 66677999999999999999999999999999999999996666666
Q ss_pred HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896 161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240 (718)
Q Consensus 161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~ 240 (718)
+++| +|.+|+||||||+
T Consensus 169 ~k~G---------------------------------------------------------------~L~VPAiNVNDSV 185 (434)
T KOG1370|consen 169 SKNG---------------------------------------------------------------KLKVPAINVNDSV 185 (434)
T ss_pred HhCC---------------------------------------------------------------ceecceeeccchh
Confidence 6555 5555666666677
Q ss_pred ccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHH
Q psy7896 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA 320 (718)
Q Consensus 241 ~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~ 320 (718)
+|++|||.|||+||++|||+|+|++|++||.++|+|||.+|+++|
T Consensus 186 TKsKFDnLygcreSl~DgikraTDvM~aGKv~Vv~GYGdVGKgCa----------------------------------- 230 (434)
T KOG1370|consen 186 TKSKFDNLYGCRESLLDGIKRATDVMIAGKVAVVCGYGDVGKGCA----------------------------------- 230 (434)
T ss_pred hhhhccccccchhhhhhhhhhhhhheecccEEEEeccCccchhHH-----------------------------------
Confidence 788899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHH
Q psy7896 321 ALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA 400 (718)
Q Consensus 321 ~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel 400 (718)
+.|++||++|+++++||+.+++|.|+||++++|+|+
T Consensus 231 --------------------------------------------qaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea 266 (434)
T KOG1370|consen 231 --------------------------------------------QALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEA 266 (434)
T ss_pred --------------------------------------------HHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHh
Confidence 778899999999999999999999999999999999
Q ss_pred hccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcc
Q psy7896 401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNS 480 (718)
Q Consensus 401 l~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~ 480 (718)
++++|||+++||++++|..+||.+||+++|++|+||+|.|||+.+|+...+++..++|+|
T Consensus 267 ~~e~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~Qv-------------------- 326 (434)
T KOG1370|consen 267 IREVDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQV-------------------- 326 (434)
T ss_pred hhcCCEEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeeccccc--------------------
Confidence 999999999999999999999999999999999999999999999999989999999999
Q ss_pred cccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHH
Q psy7896 481 LFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 560 (718)
Q Consensus 481 ~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~ 560 (718)
T Consensus 327 -------------------------------------------------------------------------------- 326 (434)
T KOG1370|consen 327 -------------------------------------------------------------------------------- 326 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCC
Q psy7896 561 ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHP 640 (718)
Q Consensus 561 ~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~ 640 (718)
|.++|++|-+||+...|+|+||+|++|||
T Consensus 327 ---------------------------------------------------D~~~~~~gr~iIlLAeGRLvNL~Catghp 355 (434)
T KOG1370|consen 327 ---------------------------------------------------DRYILPNGKHIILLAEGRLVNLGCATGHP 355 (434)
T ss_pred ---------------------------------------------------ceeeccCCcEEEEEecCceeecccccCCC
Confidence 55678999999999999999999999999
Q ss_pred cceechhHHhHHHHHHHHHhcc-CCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCCCCC
Q psy7896 641 SFVMSNSFTNQVLAQIELWTKH-SQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718 (718)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (718)
|||||+|||||||||||||+++ ++|+.|||.|||+|||+||.+||.+||++|||||++|++|||++.+||||||||||
T Consensus 356 SFvmS~sftnQvlAqIeLwt~p~~kY~~~V~~LPKklDE~VA~lHL~kl~~kLTkLt~~Qa~YlG~~~~gPfKpdhYRY 434 (434)
T KOG1370|consen 356 SFVMSNSFTNQVLAQIELWTAPEGKYKVGVYVLPKKLDEYVASLHLGKLGAKLTKLTDKQAKYLGLSKDGPFKPDHYRY 434 (434)
T ss_pred ceEEecchHHHHHHHHHHhcCCCCccccceEecchhhHHHHHHhhhhhhchhhhhhhHHHHHhcCCCcCCCCCCCCCCC
Confidence 9999999999999999999999 79999999999999999999999999999999999999999999999999999999
No 2
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=100.00 E-value=6.7e-132 Score=1042.44 Aligned_cols=413 Identities=62% Similarity=0.923 Sum_probs=402.2
Q ss_pred CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA 80 (718)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~ 80 (718)
++||+||+|||++|+||++|||+||++|++|+.+|||||.||++|+|||.|||+|++||+++||||+|++||||||||||
T Consensus 7 v~Disla~~Gr~~i~wAe~~MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplSTqD~v 86 (420)
T COG0499 7 VKDISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLSTQDDV 86 (420)
T ss_pred ecchhhhhhhhHHHHHHHhhChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCcccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHH
Q psy7896 81 AAAIAAR-GVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYK 159 (718)
Q Consensus 81 aaal~~~-gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~ 159 (718)
||||++. |||||||||||.+|||||++++|+| +| |||+|||||++.++|+++|++++.|+|++||||||
T Consensus 87 aaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~---~p-~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTG------ 156 (420)
T COG0499 87 AAALAAKEGIPVFAWKGETLEEYYEAIDQVLDW---EP-NIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTG------ 156 (420)
T ss_pred HHHHhhccCceEEEEcCCCHHHHHHHHHHHhCc---CC-CEEEecCcceeeeeecccHHHHHHhcCCCcccchH------
Confidence 9999766 9999999999999999999999976 45 99999999999999999999999999999999999
Q ss_pred HHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCC
Q psy7896 160 MFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDS 239 (718)
Q Consensus 160 ~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds 239 (718)
|+|||+|.+.|.|+||+||||||
T Consensus 157 ---------------------------------------------------------V~RL~am~~~G~L~fPai~VNDs 179 (420)
T COG0499 157 ---------------------------------------------------------VHRLRAMEKDGVLKFPAINVNDS 179 (420)
T ss_pred ---------------------------------------------------------HHHHHHHHhcCCcccceEeecch
Confidence 77888888889999999999999
Q ss_pred cccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHH
Q psy7896 240 VTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV 319 (718)
Q Consensus 240 ~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i 319 (718)
.+|++|||+|||+||++|||+|+||++++||+++|+||||||+++|
T Consensus 180 ~tK~~FDNrYGtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A---------------------------------- 225 (420)
T COG0499 180 VTKSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIA---------------------------------- 225 (420)
T ss_pred hhhcccccccccchhHHHHHHhhhceeecCceEEEecccccchHHH----------------------------------
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHH
Q psy7896 320 AALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEE 399 (718)
Q Consensus 320 ~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Lee 399 (718)
++|+++||+|+|++.||+++++|.|+||++++++|
T Consensus 226 ---------------------------------------------~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~ 260 (420)
T COG0499 226 ---------------------------------------------MRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEE 260 (420)
T ss_pred ---------------------------------------------HHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHH
Confidence 89999999999999999999999999999999999
Q ss_pred HhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhc
Q psy7896 400 AAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCN 479 (718)
Q Consensus 400 ll~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~ 479 (718)
+.+.+|||+++||++++|+.+||..||+|+|++|+||||+|||+++|++.++++.+++|+|
T Consensus 261 Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V------------------- 321 (420)
T COG0499 261 AAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQV------------------- 321 (420)
T ss_pred hhhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCc-------------------
Confidence 9999999999999999999999999999999999999999999999998888999999999
Q ss_pred ccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHH
Q psy7896 480 SLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETL 559 (718)
Q Consensus 480 ~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l 559 (718)
T Consensus 322 -------------------------------------------------------------------------------- 321 (420)
T COG0499 322 -------------------------------------------------------------------------------- 321 (420)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCC
Q psy7896 560 LELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGH 639 (718)
Q Consensus 560 ~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~ 639 (718)
+.+.++||-.+++...|+|+||+||+||
T Consensus 322 ----------------------------------------------------~ey~l~~Gkri~llaeGRLvNLa~a~GH 349 (420)
T COG0499 322 ----------------------------------------------------DEYELPDGKRIILLAEGRLVNLAAATGH 349 (420)
T ss_pred ----------------------------------------------------eEEEcCCCCEEEEEecceeeeeccCCCC
Confidence 4556799999999999999999999999
Q ss_pred CcceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q psy7896 640 PSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP 710 (718)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (718)
||||||+||+||+|||++||+++++|+++||+||++||++||++||++||++||+||++|++||++|.+||
T Consensus 350 Ps~VMd~SFanQaLa~~~L~~n~~~~~~~Vy~lP~~lD~~VArl~L~~~G~~i~~Lt~eQ~~Yl~~w~~Gt 420 (420)
T COG0499 350 PSEVMDMSFANQALAQIYLVKNHGKLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEGT 420 (420)
T ss_pred cHHHhhhhHHHHHHHHHHHHhcccccCCceeeCcHHHHHHHHHHHHHHhCceeeecCHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN02494 adenosylhomocysteinase
Probab=100.00 E-value=9.8e-122 Score=1012.44 Aligned_cols=461 Identities=60% Similarity=0.959 Sum_probs=415.9
Q ss_pred CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA 80 (718)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~ 80 (718)
|+||+||++|+++|+||++|||+|+++|++|.++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||||||
T Consensus 8 v~d~~la~~G~~~i~wa~~~mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~sTqd~v 87 (477)
T PLN02494 8 VKDMSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHA 87 (477)
T ss_pred ecchhhhHHHHHHHHHHHHhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCccchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhh-hcccCCCcccchh----HH
Q psy7896 81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFL-SEIRGISEETTTG----VH 155 (718)
Q Consensus 81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~-~~~~g~~eet~~g----~~ 155 (718)
||||++.||+||||+|||.+|||||++++|+|+|+.+|++|+||||||+.++|++..-.. ....|..++..++ .+
T Consensus 88 aaal~~~gi~vfa~~g~~~~ey~~~~~~~l~~~~~~~p~~i~DDG~dl~~~~h~~~~~e~~~~~~~~~~~~~~~~~~~~~ 167 (477)
T PLN02494 88 AAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFEKDGTLPDPTSTDNAEFK 167 (477)
T ss_pred HHHHHhCCceEEEecCCCHHHHHHHHHHHHcCCCCCCCCEEEeCCchHHHHHHhchhhhhcccccccCCCCCCcccHHHH
Confidence 999999999999999999999999999999998787789999999999999997521000 0012333333332 24
Q ss_pred hHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEE
Q psy7896 156 NLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235 (718)
Q Consensus 156 ~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~ 235 (718)
.|+++++... ...+++|+.+.++++|++|+|+||++||++|.++|+|+|||++
T Consensus 168 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~ 220 (477)
T PLN02494 168 IVLTIIKDGL---------------------------KVDPKKYHKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAIN 220 (477)
T ss_pred HHHHHHHHHH---------------------------hhCcchhhHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEE
Confidence 5555554321 1234678999999999999999999999999999999999999
Q ss_pred ecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhh
Q psy7896 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL 315 (718)
Q Consensus 236 v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L 315 (718)
||||++|++|||+|||+||++|+|+|+|+++
T Consensus 221 vnds~~K~~fDn~yGtgqS~~d~i~r~t~i~------------------------------------------------- 251 (477)
T PLN02494 221 VNDSVTKSKFDNLYGCRHSLPDGLMRATDVM------------------------------------------------- 251 (477)
T ss_pred EcChhhhhhhhccccccccHHHHHHHhcCCc-------------------------------------------------
Confidence 9999999999999999999999999987744
Q ss_pred hHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec
Q psy7896 316 DEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT 395 (718)
Q Consensus 316 ~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~ 395 (718)
+.||+|+|+|+|.||+.+|+++++|||+|++++++|.+..++.++|+.++
T Consensus 252 ------------------------------LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv 301 (477)
T PLN02494 252 ------------------------------IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL 301 (477)
T ss_pred ------------------------------cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec
Confidence 35677777777778888889999999999999999988778888999988
Q ss_pred CHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccc-cceeeecCCcccCccccchhhHHH
Q psy7896 396 TMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA-VEKVNVKPQVSPTSRTKHLTTEAL 474 (718)
Q Consensus 396 ~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~-l~~~~v~P~V~v~s~e~~~~~eal 474 (718)
+++++++.+|+|+++++++++|+.++|+.||+|++|+|+||++.|||.++|.+.. +.+.+++|++
T Consensus 302 ~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~v-------------- 367 (477)
T PLN02494 302 TLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQT-------------- 367 (477)
T ss_pred cHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCc--------------
Confidence 9999999999999999999999999999999999999999998899999998864 7777788877
Q ss_pred HhhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHH
Q psy7896 475 LATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAV 554 (718)
Q Consensus 475 ~n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~ 554 (718)
T Consensus 368 -------------------------------------------------------------------------------- 367 (477)
T PLN02494 368 -------------------------------------------------------------------------------- 367 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC-CCeEEEecCCccccc
Q psy7896 555 LIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN-GNHIILLAEGRLVNL 633 (718)
Q Consensus 555 L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~-~~~~i~ddggdl~~~ 633 (718)
+.+.++| |..+++...|+|||+
T Consensus 368 ---------------------------------------------------------d~y~~~d~g~~i~ll~eGrlvNl 390 (477)
T PLN02494 368 ---------------------------------------------------------DRWVFPDTGSGIIVLAEGRLMNL 390 (477)
T ss_pred ---------------------------------------------------------eEEEcCCCCCEEEEEeCCccccc
Confidence 3334577 999999999999999
Q ss_pred cccCCCCcceechhHHhHHHHHHHHHhc--cCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCC
Q psy7896 634 GCAMGHPSFVMSNSFTNQVLAQIELWTK--HSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPY 711 (718)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (718)
+|++|||++|||+||+||+|++++||++ +.+|+++||.||+++|++||++||++||++||+||++|++||+++.+|||
T Consensus 391 ~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~~~~~~~v~~lP~~~D~~vA~~~L~~~g~~~~~lt~~Q~~yl~~~~~gp~ 470 (477)
T PLN02494 391 GCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYINVPVEGPY 470 (477)
T ss_pred cCCCCCCcceeeHHHHHHHHHHHHHHhcccccccCCCcEECCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCCcCCCC
Confidence 9999999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy7896 712 KPDHYRY 718 (718)
Q Consensus 712 ~~~~~~~ 718 (718)
||+||||
T Consensus 471 k~~~y~y 477 (477)
T PLN02494 471 KPAHYRY 477 (477)
T ss_pred CccccCC
Confidence 9999999
No 4
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=100.00 E-value=1.1e-120 Score=1006.29 Aligned_cols=461 Identities=67% Similarity=1.055 Sum_probs=416.0
Q ss_pred CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA 80 (718)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~ 80 (718)
|+||+||++||++|+||++|||+||++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||||||
T Consensus 7 v~d~~la~~G~~~i~wa~~~mP~L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqD~~ 86 (476)
T PTZ00075 7 VKDISLAEFGRKEIELAENEMPGLMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCSCNIFSTQDHA 86 (476)
T ss_pred eccchhhhHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCCccccHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC-CeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhCh-hhhhcccCCCcccchh----H
Q psy7896 81 AAAIAARG-VAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYP-QFLSEIRGISEETTTG----V 154 (718)
Q Consensus 81 aaal~~~g-v~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~-~~~~~~~g~~eet~~g----~ 154 (718)
||||++.| |+||||||||.+|||||++++|+|+++++||+|+||||||+.++|++.. +...+-.|...+...+ .
T Consensus 87 aaal~~~g~i~vfa~~g~t~eey~~~~~~~l~~~~~~~p~~i~DdG~dl~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~ 166 (476)
T PTZ00075 87 AAAIAKAGSVPVFAWKGETLEEYWWCTEQALKWPNGDGPNLIVDDGGDATLLVHEGVKAEKLYEEKGILPDPLDPSNEDE 166 (476)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHhccCCCCCCEEEECCcHHHHHHHhhhHhhhccccccccCCCcccccHHH
Confidence 99999999 9999999999999999999999998887779999999999999994321 0000111222222211 2
Q ss_pred HhHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEE
Q psy7896 155 HNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAI 234 (718)
Q Consensus 155 ~~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~ 234 (718)
+-|+++++. .+...++.|+.+.++++|++|+|||||+|||+|+++|+|+|||+
T Consensus 167 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~ 219 (476)
T PTZ00075 167 KCLLTVLKK---------------------------LLTKNPDKWTNLVKKIVGVSEETTTGVHRLYKMLKKGELLFPAI 219 (476)
T ss_pred HHHHHHHhh---------------------------hhhcCchhhhhhhhccEeeeecchHHHHHHHHHHHCCCCCceEE
Confidence 223333331 22233467899999999999999999999999999999999999
Q ss_pred EecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhh
Q psy7896 235 NVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE 314 (718)
Q Consensus 235 ~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~ 314 (718)
||||+.+|+.|||.|||++|++|++.|.++
T Consensus 220 nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~-------------------------------------------------- 249 (476)
T PTZ00075 220 NVNDSVTKSKFDNIYGCRHSLIDGIFRATD-------------------------------------------------- 249 (476)
T ss_pred EeCCcchHHHHHHHHHHHHHHHHHHHHhcC--------------------------------------------------
Confidence 999999999999999999999999998532
Q ss_pred hhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee
Q psy7896 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV 394 (718)
Q Consensus 315 L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v 394 (718)
..+.||+|+|+|+|+||+.+|++|++|||+|++++++|.+..++.++|+.+
T Consensus 250 -----------------------------~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~ 300 (476)
T PTZ00075 250 -----------------------------VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV 300 (476)
T ss_pred -----------------------------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee
Confidence 246789999999999999999999999999999999998887777889999
Q ss_pred cCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccc-cceeeecCCcccCccccchhhHH
Q psy7896 395 TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA-VEKVNVKPQVSPTSRTKHLTTEA 473 (718)
Q Consensus 395 ~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~-l~~~~v~P~V~v~s~e~~~~~ea 473 (718)
++++++++.+|||+++++++++|+.++|++||+|++|+|+||++.|+++++|.... +++.+++|++
T Consensus 301 ~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~vdv~evep~v------------- 367 (476)
T PTZ00075 301 VTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQV------------- 367 (476)
T ss_pred ccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCCceeecccCCC-------------
Confidence 99999999999999999999999999999999999999999999999999998754 7888888887
Q ss_pred HHhhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHH
Q psy7896 474 LLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTA 553 (718)
Q Consensus 474 l~n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta 553 (718)
T Consensus 368 -------------------------------------------------------------------------------- 367 (476)
T PTZ00075 368 -------------------------------------------------------------------------------- 367 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccc
Q psy7896 554 VLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNL 633 (718)
Q Consensus 554 ~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~ 633 (718)
+.++++||..|++...|+|||+
T Consensus 368 ----------------------------------------------------------~~~~~~~g~~i~llaeGrlvNl 389 (476)
T PTZ00075 368 ----------------------------------------------------------DRYTFPDGKGIILLAEGRLVNL 389 (476)
T ss_pred ----------------------------------------------------------CeEEeCCCCEEEEEeCCCcccc
Confidence 3456789999999999999999
Q ss_pred cccCCCCcceechhHHhHHHHHHHHHhccC--CCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCC
Q psy7896 634 GCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPY 711 (718)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (718)
+|++|||+||||+||+||+|||++||+++. +|+++||.||++||++||++||++||++||+||++|++|||++.+|||
T Consensus 390 ~~~~GhP~~vMd~sfa~Q~la~~~l~~~~~~~~~~~~v~~lp~~~d~~vA~~~L~~~g~~~~~lt~~q~~yl~~~~~gp~ 469 (476)
T PTZ00075 390 GCATGHPSFVMSNSFTNQVLAQIELWENRDTGKYPNGVYKLPKELDEKVARLHLKKLGAKLTKLTDKQAEYIGVPVDGPY 469 (476)
T ss_pred CCCCCCCeeEeeHHHHHHHHHHHHHHhccCccccCCceEECCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy7896 712 KPDHYRY 718 (718)
Q Consensus 712 ~~~~~~~ 718 (718)
||+||||
T Consensus 470 k~~~y~y 476 (476)
T PTZ00075 470 KSDHYRY 476 (476)
T ss_pred CccccCC
Confidence 9999999
No 5
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=100.00 E-value=1.3e-107 Score=898.12 Aligned_cols=416 Identities=67% Similarity=1.033 Sum_probs=393.7
Q ss_pred CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA 80 (718)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~ 80 (718)
|+||+||++|+++|+||+++||+|+++|++|+++|||+|+||++|+|||+||++|++||+++||||+|++||||||||||
T Consensus 10 ~~d~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~v 89 (425)
T PRK05476 10 VADISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDV 89 (425)
T ss_pred ecchhhhhhhhHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896 81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM 160 (718)
Q Consensus 81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~ 160 (718)
||+|++.||+||||+|+|.+|||||++++| ++++| ++|+||||||+.++|+++|+++++++|++||||||
T Consensus 90 aaaL~~~gi~v~a~~~~~~~ey~~~~~~~l--~~~~p-~iiiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttG------- 159 (425)
T PRK05476 90 AAALAAAGIPVFAWKGETLEEYWECIERAL--DGHGP-NMILDDGGDLTLLVHTERPELLANIKGVTEETTTG------- 159 (425)
T ss_pred HHHHHHCCceEEecCCCCHHHHHHHHHHHh--cCCCC-CEEEecccHHHHHHHHHhhHhHhccEeeeecchHH-------
Confidence 999999999999999999999999999998 34455 99999999999999999999999999998888888
Q ss_pred HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896 161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240 (718)
Q Consensus 161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~ 240 (718)
++||++|.++|+|+|||||||||.
T Consensus 160 --------------------------------------------------------v~rl~~~~~~~~l~~Pv~~vn~s~ 183 (425)
T PRK05476 160 --------------------------------------------------------VHRLYAMAKDGALKFPAINVNDSV 183 (425)
T ss_pred --------------------------------------------------------HHHHHHHHHcCCCCCCEEecCCcc
Confidence 788888888999999999999999
Q ss_pred ccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHH
Q psy7896 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA 320 (718)
Q Consensus 241 ~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~ 320 (718)
+|++|||+|||+||+++++.++++.
T Consensus 184 ~K~~~dn~~gt~~s~~~ai~rat~~------------------------------------------------------- 208 (425)
T PRK05476 184 TKSKFDNRYGTGESLLDGIKRATNV------------------------------------------------------- 208 (425)
T ss_pred cCccccccHHHHhhhHHHHHHhccC-------------------------------------------------------
Confidence 9999999999999999999986542
Q ss_pred HHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHH
Q psy7896 321 ALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA 400 (718)
Q Consensus 321 ~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel 400 (718)
.+.|++|+|+|+|.||+.+|++|+++|++|+++|++|.+..++.++|+.+.+++++
T Consensus 209 ------------------------~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~ea 264 (425)
T PRK05476 209 ------------------------LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEA 264 (425)
T ss_pred ------------------------CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHH
Confidence 24577888888888888888999999999999999999888888889998899999
Q ss_pred hccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcc
Q psy7896 401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNS 480 (718)
Q Consensus 401 l~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~ 480 (718)
++.+|+|++++|++++|+.++|..||+|++++|+||++.|+|+++|.+.+.++.+++|+|
T Consensus 265 l~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v-------------------- 324 (425)
T PRK05476 265 AELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQV-------------------- 324 (425)
T ss_pred HhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCc--------------------
Confidence 999999999999999999999999999999999999999999999998767788889988
Q ss_pred cccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHH
Q psy7896 481 LFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 560 (718)
Q Consensus 481 ~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~ 560 (718)
T Consensus 325 -------------------------------------------------------------------------------- 324 (425)
T PRK05476 325 -------------------------------------------------------------------------------- 324 (425)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCC
Q psy7896 561 ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHP 640 (718)
Q Consensus 561 ~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~ 640 (718)
+.+.++||-.+++...|+|+|++|++|||
T Consensus 325 ---------------------------------------------------~~y~~~~g~~i~lLa~GrlvNl~~~~ghp 353 (425)
T PRK05476 325 ---------------------------------------------------DEYTLPDGKRIILLAEGRLVNLGAATGHP 353 (425)
T ss_pred ---------------------------------------------------eEEEeCCCCEEEEEeCCcccccCCCCCCc
Confidence 44567899999999999999999999999
Q ss_pred cceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCC
Q psy7896 641 SFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYK 712 (718)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (718)
++|||+||++|+|++++||+++++|++|||.||+++|++||++||++||++||+||++|++||++|.+||||
T Consensus 354 ~~vmd~sfa~q~l~~~~l~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~~ 425 (425)
T PRK05476 354 SEVMDMSFANQALAQIELFTNRGKLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQAEYIGVWVEGPFK 425 (425)
T ss_pred ceeeCHHHHHHHHHHHHHHhccCcCCCCeEECCHHHHHHHHHHHHHHcCCccccCCHHHHHHcCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=100.00 E-value=2.8e-107 Score=891.07 Aligned_cols=406 Identities=59% Similarity=0.892 Sum_probs=380.9
Q ss_pred HhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHHHHHHHhC
Q psy7896 8 EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAAR 87 (718)
Q Consensus 8 ~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~aaal~~~ 87 (718)
++|+++|+||+++||+|+++|++|.++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||||||||+|++.
T Consensus 1 ~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~ 80 (406)
T TIGR00936 1 AEGRKKIEWAEREMPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKA 80 (406)
T ss_pred CccHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHHHhhcccC
Q psy7896 88 GVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLG 167 (718)
Q Consensus 88 gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~~~~~~l~ 167 (718)
||+||||+|+|++|||||++++|+ .+| ++|+||||||+.++|+++|+++++++|++||||||
T Consensus 81 gi~v~a~~~~~~~ey~~~~~~~l~---~~p-~~iiDdGgdl~~~~~~~~~~~~~~~~G~~EeTttG-------------- 142 (406)
T TIGR00936 81 GIPVFAWRGETNEEYYWAIEQVLD---HEP-NIIIDDGADLIFLLHTERPELLEKIIGGSEETTTG-------------- 142 (406)
T ss_pred CceEEEecCCCHHHHHHHHHHHhc---CCC-CEEEecccHHHHHHHHhhhhhhhccEEEeecchHH--------------
Confidence 999999999999999999999995 466 99999999999999999999999998888888888
Q ss_pred CCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCcccccccc
Q psy7896 168 VPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDN 247 (718)
Q Consensus 168 ~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~~K~~fd~ 247 (718)
++||++|.++|+|+|||||||||++|++|||
T Consensus 143 -------------------------------------------------v~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn 173 (406)
T TIGR00936 143 -------------------------------------------------VIRLRAMEAEGVLKFPAINVNDAYTKSLFDN 173 (406)
T ss_pred -------------------------------------------------HHHHHHHHHcCCCCCcEEEecchhhchhhhc
Confidence 7888888889999999999999999999999
Q ss_pred cccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896 248 LYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHL 327 (718)
Q Consensus 248 ~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~l 327 (718)
+|||+||+++++.|+++++
T Consensus 174 ~yg~g~s~~~~i~r~t~~~------------------------------------------------------------- 192 (406)
T TIGR00936 174 RYGTGQSTIDGILRATNLL------------------------------------------------------------- 192 (406)
T ss_pred ccccchhHHHHHHHhcCCC-------------------------------------------------------------
Confidence 9999999999999976643
Q ss_pred cccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEE
Q psy7896 328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIF 407 (718)
Q Consensus 328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiI 407 (718)
+.|++|+|+|+|.||+.+|++++++|++|+++|+||.+..++.++|+.+.+++++++.+|+|
T Consensus 193 ------------------l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV 254 (406)
T TIGR00936 193 ------------------IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF 254 (406)
T ss_pred ------------------CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence 35667777777777777779999999999999999988888888999999999999999999
Q ss_pred EEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccccccc
Q psy7896 408 VTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLV 487 (718)
Q Consensus 408 i~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv 487 (718)
++++|++++|+.++|..||+|++++|+||++.|||.++|.+.+.++.+++|++
T Consensus 255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v--------------------------- 307 (406)
T TIGR00936 255 ITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQV--------------------------- 307 (406)
T ss_pred EECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccce---------------------------
Confidence 99999999999999999999999999999998999999988666666777777
Q ss_pred ccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEE
Q psy7896 488 NTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQ 567 (718)
Q Consensus 488 ~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~ 567 (718)
T Consensus 308 -------------------------------------------------------------------------------- 307 (406)
T TIGR00936 308 -------------------------------------------------------------------------------- 307 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcceechh
Q psy7896 568 WSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNS 647 (718)
Q Consensus 568 ~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~~~~~ 647 (718)
+.+.++||..+++.+.|+|+|++|++|||++|||+|
T Consensus 308 --------------------------------------------~~~~~~~g~~i~ll~~GrlvNl~~~~ghp~~vmd~s 343 (406)
T TIGR00936 308 --------------------------------------------DEYILKDGRRIYLLAEGRLVNLAAAEGHPSEVMDMS 343 (406)
T ss_pred --------------------------------------------EEEEeCCCCEEEEEeCCceecccCCCCCcceeeCHH
Confidence 334568899999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q psy7896 648 FTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP 710 (718)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (718)
|++|+|++++||+++.+|++|||.||+++|++||++||++||++||+||++|++||++|.+||
T Consensus 344 fa~q~la~~~l~~~~~~~~~~v~~lp~~~d~~va~~~l~~~g~~~~~lt~~q~~y~~~~~~g~ 406 (406)
T TIGR00936 344 FANQALAAEYLWKNHDKLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQKEYLGSWEEGT 406 (406)
T ss_pred HHHHHHHHHHHHhcccccCCCeEECCHHHHHHHHHHHHHHcCceeccCCHHHHHHhcCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 7
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=100.00 E-value=1.4e-100 Score=840.42 Aligned_cols=413 Identities=80% Similarity=1.229 Sum_probs=374.3
Q ss_pred ccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHHHHH
Q psy7896 4 IKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAA 83 (718)
Q Consensus 4 ~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~aaa 83 (718)
++||++|+++|+||++|||+|+++|++|.++|||+|+||++|+|||+|||+|++||+++||||+||+||||||||||||+
T Consensus 1 ~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~ 80 (413)
T cd00401 1 ISLAAFGRKEIEIAENEMPGLMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAA 80 (413)
T ss_pred CCchhhhhHHHHHHHHHCHHHHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHHHhh
Q psy7896 84 IAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKE 163 (718)
Q Consensus 84 l~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~~~~ 163 (718)
|++.||+||||+|+|.+|||||++++|+|++++| ++|+||||||+.++|+++|+++++++|++||||||
T Consensus 81 l~~~gi~v~a~~~~~~~~y~~~~~~~l~~~~~~p-~~i~DdGg~~~~~~~~~~~~~~~~~~G~~EeTttG---------- 149 (413)
T cd00401 81 IAAAGIPVFAWKGETLEEYWWCIEQALKFPDGEP-NMILDDGGDLTLLIHKKHPELLPGIRGISEETTTG---------- 149 (413)
T ss_pred HHhcCceEEEEcCCCHHHHHHHHHHHHhccCCCC-cEEEecchHHHHHHHhhhhhhhhccEEEeecchHH----------
Confidence 9999999999999999999999999999988876 99999999999999999999999888888888888
Q ss_pred cccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCcccc
Q psy7896 164 NKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKS 243 (718)
Q Consensus 164 ~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~~K~ 243 (718)
++||++|.++|+|+|||++||||++|+
T Consensus 150 -----------------------------------------------------v~rl~~~~~~~~l~~Pv~~vnds~~K~ 176 (413)
T cd00401 150 -----------------------------------------------------VHRLYKMEKEGKLKFPAINVNDSVTKS 176 (413)
T ss_pred -----------------------------------------------------HHHHHHHHHCCCCCCCEEEecchhhcc
Confidence 789999988999999999999999999
Q ss_pred cccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHH
Q psy7896 244 KFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH 323 (718)
Q Consensus 244 ~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~ 323 (718)
+|||+|||+||+++++.|.++..+
T Consensus 177 ~~dn~~g~g~s~~~~i~r~t~~~l-------------------------------------------------------- 200 (413)
T cd00401 177 KFDNLYGCRESLIDGIKRATDVMI-------------------------------------------------------- 200 (413)
T ss_pred cccccchhchhhHHHHHHhcCCCC--------------------------------------------------------
Confidence 999999999999999999776444
Q ss_pred HHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhcc
Q psy7896 324 LEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKE 403 (718)
Q Consensus 324 l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~ 403 (718)
.|++|+|+|+|.||+.+|+.++++|++|+++|++|.+...+.+.|+.+++++++++.
T Consensus 201 -----------------------~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~ 257 (413)
T cd00401 201 -----------------------AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKE 257 (413)
T ss_pred -----------------------CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcC
Confidence 455666666666666667899999999999999998887888889988888999999
Q ss_pred CcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccc
Q psy7896 404 GGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFK 483 (718)
Q Consensus 404 aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~ 483 (718)
+|+|+.++|+.++|+.++++.||+|++++|+|+++.++|.+.|....++....++++
T Consensus 258 aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~~----------------------- 314 (413)
T cd00401 258 GDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQV----------------------- 314 (413)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCCc-----------------------
Confidence 999999999999999999999999999999999988999988776433333333332
Q ss_pred ccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcC
Q psy7896 484 YSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELG 563 (718)
Q Consensus 484 ~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~G 563 (718)
T Consensus 315 -------------------------------------------------------------------------------- 314 (413)
T cd00401 315 -------------------------------------------------------------------------------- 314 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcce
Q psy7896 564 AEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFV 643 (718)
Q Consensus 564 A~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~ 643 (718)
....++||.-+.+-..|.++|+.|+.|||++|
T Consensus 315 ------------------------------------------------~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~v 346 (413)
T cd00401 315 ------------------------------------------------DRYELPDGRRIILLAEGRLVNLGCATGHPSFV 346 (413)
T ss_pred ------------------------------------------------ceEEcCCcchhhhhhCcCCCCCcccCCCccce
Confidence 11123444445555678999999999999999
Q ss_pred echhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q psy7896 644 MSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP 710 (718)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (718)
||+||++|+++++++|+++++++++||.+|+++|++||++||++||++||+||++|++||++|.+||
T Consensus 347 md~sf~~q~l~a~~l~~~~~~~~~kV~~~p~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~ 413 (413)
T cd00401 347 MSNSFTNQVLAQIELWTNRDKYEVGVYFLPKKLDEEVARLHLGKLGVKLTKLTDKQAEYLGVPVEGP 413 (413)
T ss_pred echhHHHHHHHHHHHHhcCCcCCCcEEECCHHHHHHHHHHHHHhcCceeccCCHHHHHHhcCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 8
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=100.00 E-value=9.4e-92 Score=722.09 Aligned_cols=183 Identities=62% Similarity=0.926 Sum_probs=161.1
Q ss_pred CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896 1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA 80 (718)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~ 80 (718)
|+||+||++|+++|+||+++||+||++|++|+++|||+|+||++|||||+|||+|++||+++||||+|||||||||||||
T Consensus 5 VkDi~LA~~G~~~i~wa~~~MPvL~~lr~~~~~~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdv 84 (268)
T PF05221_consen 5 VKDISLAESGRKKIEWAERHMPVLMALRERFEAEKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDV 84 (268)
T ss_dssp ES-GGGHHHHHHHHHHHHHT-HHHHHHHHHHTTT-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT--HHH
T ss_pred ccCccHhHHHHHHHHHHHhhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCcccchHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896 81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM 160 (718)
Q Consensus 81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~ 160 (718)
||||++.||+||||+|+|.+||||||+++|.|.++.+|++|+||||||++++|++||+++++++|+|||||||
T Consensus 85 aAAL~~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~~~~~l~~~i~G~sEETTTG------- 157 (268)
T PF05221_consen 85 AAALAEEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHTKRPELLSGIIGGSEETTTG------- 157 (268)
T ss_dssp HHHHHHTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHHHHHHHHHT-SEEEE-SHHH-------
T ss_pred HHHhccCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHHHHHHHhhhhheEEeccccccc-------
Confidence 9999999999999999999999999999999987666699999999999999999999999999999999999
Q ss_pred HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896 161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240 (718)
Q Consensus 161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~ 240 (718)
|+||++|.++|+|.||||+||||.
T Consensus 158 --------------------------------------------------------v~rL~am~~~g~L~~PviavNDa~ 181 (268)
T PF05221_consen 158 --------------------------------------------------------VHRLRAMEKEGKLKFPVIAVNDAV 181 (268)
T ss_dssp --------------------------------------------------------HHHHHHHHHTT---SEEEESTTSH
T ss_pred --------------------------------------------------------chhhhhhhhhcccCCCeeEecchh
Confidence 778888888899999999999999
Q ss_pred cccccc
Q psy7896 241 TKSKFD 246 (718)
Q Consensus 241 ~K~~fd 246 (718)
+|++||
T Consensus 182 tK~~FD 187 (268)
T PF05221_consen 182 TKHLFD 187 (268)
T ss_dssp HHHTTH
T ss_pred hHhhcC
Confidence 999754
No 9
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=100.00 E-value=7.4e-47 Score=389.74 Aligned_cols=217 Identities=59% Similarity=0.890 Sum_probs=180.9
Q ss_pred cccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCch
Q psy7896 498 VHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQ 577 (718)
Q Consensus 498 ~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstq 577 (718)
.|.|+|++|+++|+++|+||++|||+|+.||++|..+|||+|+||++|||||+|||+|+++|+++||+|+||||||||||
T Consensus 2 ~y~VkDi~LA~~G~~~i~wa~~~MPvL~~lr~~~~~~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQ 81 (268)
T PF05221_consen 2 DYKVKDISLAESGRKKIEWAERHMPVLMALRERFEAEKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQ 81 (268)
T ss_dssp EEBES-GGGHHHHHHHHHHHHHT-HHHHHHHHHHTTT-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT--
T ss_pred CCcccCccHhHHHHHHHHHHHhhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCcccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecC-CCCeEEEecCCccccccc---------------------
Q psy7896 578 DHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLP-NGNHIILLAEGRLVNLGC--------------------- 635 (718)
Q Consensus 578 d~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~-~~~~~i~ddggdl~~~~~--------------------- 635 (718)
|||||||++.||+||||||||.|||||||+++|+ +.| .+|+|||||||||+++.-
T Consensus 82 DdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L~---~~~~~~P~~iiDDG~Dl~~~lh~~~~~l~~~i~G~sEETTTGv 158 (268)
T PF05221_consen 82 DDVAAALAEEGIPVFAWKGETDEEYWWCIEKALS---WEDDHGPNLIIDDGGDLVNLLHTKRPELLSGIIGGSEETTTGV 158 (268)
T ss_dssp HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCHS---ESTTCE-SEEEESSSHHHHHHHHHHHHHHHT-SEEEE-SHHHH
T ss_pred hHHHHHhccCCceEEEeCCCCHHHHHHHHHHHhc---CCCCCCcceeecchHHHHHHHHHHHHhhhhheEEecccccccc
Confidence 9999999999999999999999999999999994 122 379999999999987431
Q ss_pred -------cCC-------------------CCcceechhHHhHHHHHHHHHhcc--CCCCCceeeCChhhHHHHHHHhhhh
Q psy7896 636 -------AMG-------------------HPSFVMSNSFTNQVLAQIELWTKH--SQYPVGVYMLPKKLDEEVAALHLEH 687 (718)
Q Consensus 636 -------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (718)
..| ||+||||+||+||+|||++||+++ ++|++|||.||++||++||++||++
T Consensus 159 ~rL~am~~~g~L~~PviavNDa~tK~~FDHP~eVMd~SFa~QaLa~~~L~~~~~~~~~~~~V~~lP~~lDe~VA~~kL~~ 238 (268)
T PF05221_consen 159 HRLRAMEKEGKLKFPVIAVNDAVTKHLFDHPSEVMDMSFANQALAQIYLWKNPNSGKLEPGVYPLPKELDEEVARLKLKS 238 (268)
T ss_dssp HHHHHHHHTT---SEEEESTTSHHHHTTHS-HHHHHHHHHHHHHHHHHHHHTGTTGGSTSSEEE--HHHHHHHHHHHHGG
T ss_pred hhhhhhhhhcccCCCeeEecchhhHhhcCCchhhhhhHhHHHHHHHHHHHhCcCccccCCCEEECCccchHHHHHHHHHH
Confidence 123 999999999999999999999999 8999999999999999999999999
Q ss_pred cCcccccCCHHHHhhcCCCCCCCCCCCCCC
Q psy7896 688 LGVKLTKLTEDQAKYLGLPIEGPYKPDHYR 717 (718)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (718)
|||+||+||++|++||++|.+|||||||||
T Consensus 239 lGi~id~Lt~eQ~~YL~~~~~GP~k~~~yr 268 (268)
T PF05221_consen 239 LGIKIDKLTEEQAEYLGSWQEGPFKPDHYR 268 (268)
T ss_dssp GT-------HHHHHHHTS-TTS-SS-TT--
T ss_pred cCCccccCCHHHHHHcCCCCCCCCCccccC
Confidence 999999999999999999999999999998
No 10
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-45 Score=385.79 Aligned_cols=174 Identities=47% Similarity=0.645 Sum_probs=151.5
Q ss_pred ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896 497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST 576 (718)
Q Consensus 497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst 576 (718)
..|.|+|++|+++|+++|+||++|||+|++||++|..+|||||+||++|||||+|||+|++||+++||||+|+|||||||
T Consensus 3 ~~y~v~Disla~~Gr~~i~wAe~~MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplST 82 (420)
T COG0499 3 QDYKVKDISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLST 82 (420)
T ss_pred ccceecchhhhhhhhHHHHHHHhhChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhc-CceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcceechhHHhHHHHH
Q psy7896 577 QDHAAAAIAAR-GVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQ 655 (718)
Q Consensus 577 qd~vaaal~~~-gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (718)
||||||||++. |||||||||||.||||||++++|+ ..|||||||||||+.+.- .++|.+.
T Consensus 83 qD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~------~~p~iiiDDG~D~~~~vh-~~~~~l~------------ 143 (420)
T COG0499 83 QDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLD------WEPNIIIDDGGDLTKLVH-LERPELL------------ 143 (420)
T ss_pred cHHHHHHHhhccCceEEEEcCCCHHHHHHHHHHHhC------cCCCEEEecCcceeeeee-cccHHHH------------
Confidence 99999999755 999999999999999999999984 458999999999988763 4466543
Q ss_pred HHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcc
Q psy7896 656 IELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVK 691 (718)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (718)
-.++--.++...||++|..--.+ ..|..+.++|+
T Consensus 144 ~~i~G~tEETTTGV~RL~am~~~--G~L~fPai~VN 177 (420)
T COG0499 144 DAIKGGTEETTTGVHRLRAMEKD--GVLKFPAINVN 177 (420)
T ss_pred HHhcCCCcccchHHHHHHHHHhc--CCcccceEeec
Confidence 33444556788999988654433 45566666553
No 11
>PLN02494 adenosylhomocysteinase
Probab=100.00 E-value=8.6e-43 Score=385.86 Aligned_cols=136 Identities=55% Similarity=0.809 Sum_probs=129.3
Q ss_pred cccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCC
Q psy7896 496 LLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFS 575 (718)
Q Consensus 496 ~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~npls 575 (718)
...|.|+|++|+++|+++|+||++|||+|+.||++|..+|||+|+||++|||||+|||+|+++|+++||+|+||||||||
T Consensus 3 ~~~~~v~d~~la~~G~~~i~wa~~~mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~s 82 (477)
T PLN02494 3 GREYKVKDMSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS 82 (477)
T ss_pred CcceeecchhhhHHHHHHHHHHHHhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC--CCeEEEecCCccccccc
Q psy7896 576 TQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN--GNHIILLAEGRLVNLGC 635 (718)
Q Consensus 576 tqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~--~~~~i~ddggdl~~~~~ 635 (718)
|||||||||++.||+||||||||.||||||++++|+ |+| +|+||+||||||+++.-
T Consensus 83 Tqd~vaaal~~~gi~vfa~~g~~~~ey~~~~~~~l~----~~~~~~p~~i~DDG~dl~~~~h 140 (477)
T PLN02494 83 TQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALD----WGPGGGPDLIVDDGGDATLLIH 140 (477)
T ss_pred chHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHHc----CCCCCCCCEEEeCCchHHHHHH
Confidence 999999999999999999999999999999999995 333 49999999999988764
No 12
>KOG1370|consensus
Probab=100.00 E-value=1.5e-42 Score=358.82 Aligned_cols=178 Identities=55% Similarity=0.803 Sum_probs=157.5
Q ss_pred cccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCC
Q psy7896 496 LLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFS 575 (718)
Q Consensus 496 ~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~npls 575 (718)
...|.++||+++.+||+.|+.|+++||+||.+|++|..+|||+|+||++|+|+|++||+|+|||.+|||||+|+|||+||
T Consensus 5 ~~~ykv~~i~~aafGRkeieiAE~eMPglma~r~r~~~skPlkgArI~GClH~tvqTAVLiETLv~LGAev~WssCNIfS 84 (434)
T KOG1370|consen 5 SSNYKVKDISQAAFGRKEIEIAENEMPGLMALRKRYGPSKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFS 84 (434)
T ss_pred CCCceeeechhhhhchhhhhhhhhhcchHHHHHHHhccCCCCCCCeeeeeeeeehhHHHHHHHHHHhCceeeeeecceec
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcceechhHHhHHHHH
Q psy7896 576 TQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQ 655 (718)
Q Consensus 576 tqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (718)
|||++|||+|+.|+|||||+|||+|||||||+++|..+ ...|+||+|||||+++|.-.. ||. .+..
T Consensus 85 TQdhaAAAiA~~g~Pvfawkget~ee~~wcie~~~~~~---g~~~nmIlDdggd~t~l~h~k-yp~----------~~~~ 150 (434)
T KOG1370|consen 85 TQDHAAAAIAEAGVPVFAWKGETEEEYWWCIERCLNKD---GWQPNMILDDGGDLTHLVHEK-YPQ----------MFKK 150 (434)
T ss_pred chhHHHHHHHhcCCceeeeccccchhhhhhhhhhhccC---CCCcceeecCCCchhhhhhhh-hHH----------HHhh
Confidence 99999999999999999999999999999999999532 234799999999999998543 553 3333
Q ss_pred HHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcc
Q psy7896 656 IELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVK 691 (718)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (718)
|.-. .++...|||.|.+-..+ ..|+.++++|+
T Consensus 151 i~Gi--seEttTGVH~Lykm~k~--G~L~VPAiNVN 182 (434)
T KOG1370|consen 151 IRGI--SEETTTGVHNLYKMSKN--GKLKVPAINVN 182 (434)
T ss_pred hccc--chhhhhhHHHHHHHHhC--Cceecceeecc
Confidence 3333 34567899999988877 77888888885
No 13
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=100.00 E-value=8.5e-42 Score=378.78 Aligned_cols=137 Identities=65% Similarity=0.937 Sum_probs=128.4
Q ss_pred ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896 497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST 576 (718)
Q Consensus 497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst 576 (718)
..|.|+|++|+++|+++|+||+++||+|++||++|..+|||+|+||++|||||+|||+|+++|+++||+|+|||||||||
T Consensus 3 ~~~~v~d~~la~~G~~~i~wa~~~mP~L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~st 82 (476)
T PTZ00075 3 TDYKVKDISLAEFGRKEIELAENEMPGLMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCSCNIFST 82 (476)
T ss_pred cceeeccchhhhHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCCcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcC-ceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccc
Q psy7896 577 QDHAAAAIAARG-VAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGC 635 (718)
Q Consensus 577 qd~vaaal~~~g-i~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~ 635 (718)
||||||||++.| |+||||||||.||||||++++|+.. -..+||||+||||||+.+.-
T Consensus 83 qD~~aaal~~~g~i~vfa~~g~t~eey~~~~~~~l~~~--~~~~p~~i~DdG~dl~~~~~ 140 (476)
T PTZ00075 83 QDHAAAAIAKAGSVPVFAWKGETLEEYWWCTEQALKWP--NGDGPNLIVDDGGDATLLVH 140 (476)
T ss_pred ccHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHhcc--CCCCCCEEEECCcHHHHHHH
Confidence 999999999988 9999999999999999999999520 02369999999999997663
No 14
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=100.00 E-value=6.7e-38 Score=345.04 Aligned_cols=128 Identities=71% Similarity=1.049 Sum_probs=122.5
Q ss_pred hhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCchHHHHHH
Q psy7896 504 IKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAA 583 (718)
Q Consensus 504 ~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaa 583 (718)
++|+++|+++|+||++|||+|+.||++|..+|||+|+||++|+|+|+|||+|+++|+++||+|+||+|||||||||||||
T Consensus 1 ~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~ 80 (413)
T cd00401 1 ISLAAFGRKEIEIAENEMPGLMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAA 80 (413)
T ss_pred CCchhhhhHHHHHHHHHCHHHHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcccccc
Q psy7896 584 IAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLG 634 (718)
Q Consensus 584 l~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~ 634 (718)
|++.||+||||+|+|.||||||++++|+. .+++|++|+||||||+.+.
T Consensus 81 l~~~gi~v~a~~~~~~~~y~~~~~~~l~~---~~~~p~~i~DdGg~~~~~~ 128 (413)
T cd00401 81 IAAAGIPVFAWKGETLEEYWWCIEQALKF---PDGEPNMILDDGGDLTLLI 128 (413)
T ss_pred HHhcCceEEEEcCCCHHHHHHHHHHHHhc---cCCCCcEEEecchHHHHHH
Confidence 99999999999999999999999999953 1457999999999999865
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=100.00 E-value=1.6e-37 Score=342.87 Aligned_cols=133 Identities=62% Similarity=0.931 Sum_probs=127.9
Q ss_pred ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896 497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST 576 (718)
Q Consensus 497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst 576 (718)
..|.|+|++|+++|+++|+||+++||+|+.||++|..+|||+|+||++|+|||+|||+|+++|+++||+|+||+||||||
T Consensus 6 ~~~~~~d~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~St 85 (425)
T PRK05476 6 TDYKVADISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFST 85 (425)
T ss_pred CceeecchhhhhhhhHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcccccc
Q psy7896 577 QDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLG 634 (718)
Q Consensus 577 qd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~ 634 (718)
||||||||++.||+||||+|+|.||||||++++|+ +.+|++|+||||||+.+.
T Consensus 86 qd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~-----~~~p~iiiDdGgdl~~~~ 138 (425)
T PRK05476 86 QDDVAAALAAAGIPVFAWKGETLEEYWECIERALD-----GHGPNMILDDGGDLTLLV 138 (425)
T ss_pred CHHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhc-----CCCCCEEEecccHHHHHH
Confidence 99999999999999999999999999999999981 467899999999999855
No 16
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=100.00 E-value=1.1e-36 Score=334.62 Aligned_cols=121 Identities=56% Similarity=0.867 Sum_probs=117.1
Q ss_pred ccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhc
Q psy7896 508 EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAAR 587 (718)
Q Consensus 508 ~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~ 587 (718)
++|+++|+||+++||+|+.||++|.++|||+|+||++|+|||+|||+|+++|+++||+|+||+||||||||||||||++.
T Consensus 1 ~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~ 80 (406)
T TIGR00936 1 AEGRKKIEWAEREMPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKA 80 (406)
T ss_pred CccHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcccccc
Q psy7896 588 GVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLG 634 (718)
Q Consensus 588 gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~ 634 (718)
||+||||+|+|+|||||||+++| +..|++|+||||||+++.
T Consensus 81 gi~v~a~~~~~~~ey~~~~~~~l------~~~p~~iiDdGgdl~~~~ 121 (406)
T TIGR00936 81 GIPVFAWRGETNEEYYWAIEQVL------DHEPNIIIDDGADLIFLL 121 (406)
T ss_pred CceEEEecCCCHHHHHHHHHHHh------cCCCCEEEecccHHHHHH
Confidence 99999999999999999999999 357899999999999865
No 17
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=100.00 E-value=7.3e-34 Score=276.20 Aligned_cols=135 Identities=63% Similarity=0.969 Sum_probs=115.4
Q ss_pred ccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy7896 247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH 326 (718)
Q Consensus 247 ~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~ 326 (718)
|+|||+||++|+|+|+|+++++||+++|+|||+||+++|
T Consensus 1 N~yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A----------------------------------------- 39 (162)
T PF00670_consen 1 NRYGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIA----------------------------------------- 39 (162)
T ss_dssp HHHHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHH-----------------------------------------
T ss_pred CccccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHH-----------------------------------------
Confidence 789999999999999999998888888888888777777
Q ss_pred hcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcE
Q psy7896 327 LGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGI 406 (718)
Q Consensus 327 lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDi 406 (718)
+.|+++|++|+|+|+||.++++|.++||++.+++++++++|+
T Consensus 40 --------------------------------------~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi 81 (162)
T PF00670_consen 40 --------------------------------------RALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADI 81 (162)
T ss_dssp --------------------------------------HHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SE
T ss_pred --------------------------------------HHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCE
Confidence 888999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCc
Q psy7896 407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460 (718)
Q Consensus 407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V 460 (718)
|+++||++++|+.++|++||+|++|+|+||+|.|||+++|.+.++++.+++|++
T Consensus 82 ~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v 135 (162)
T PF00670_consen 82 FVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRPQV 135 (162)
T ss_dssp EEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTE
T ss_pred EEECCCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCCCe
Confidence 999999999999999999999999999999999999999999888999999988
No 18
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.93 E-value=3.6e-25 Score=238.00 Aligned_cols=223 Identities=17% Similarity=0.138 Sum_probs=156.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh--hhhhc
Q psy7896 268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ--AKYLD 343 (718)
Q Consensus 268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~--~~~~g 343 (718)
.-|.|+..|.|....++. +++++|+.|+.+..-....+..++-+ +.+.|++...+-. ++.++|..+. ....+
T Consensus 66 ~LKlIa~~~~G~D~vDl~-aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~---~r~g~w~~~~~~~~~~~ 141 (324)
T COG1052 66 GLKLIATRSAGYDNVDLE-AAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRR---VREGNWSLSGGPDPLLG 141 (324)
T ss_pred CcEEEEEeccccCcccHH-HHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHH---HhcCcccccCCcccccc
Confidence 456677776666666665 66999999998765444444443334 3445655333311 2222332221 22558
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCH
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRG 419 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~ 419 (718)
.+++|||+||||+|+||+++|+++++|||+|++|++.|.+. .....++.+.+++|++++||||+++ ..|+|+||+
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~ 220 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE-AEKELGARYVDLDELLAESDIISLHCPLTPETRHLINA 220 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH-HHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence 89999999999999999999999999999999999887622 2233447777899999999999986 358999999
Q ss_pred HHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896 420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH 499 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y 499 (718)
+.|++||+|++|||+|||. -+|.++|.+..-+........|||+.|...+.+++.+..+. +|++.|||.++.+...
T Consensus 221 ~~l~~mk~ga~lVNtaRG~-~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~---~~vvltPHia~at~ea 296 (324)
T COG1052 221 EELAKMKPGAILVNTARGG-LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNF---PNVVLTPHIASATEEA 296 (324)
T ss_pred HHHHhCCCCeEEEECCCcc-ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCC---CCEEEccccccccHHH
Confidence 9999999999999999996 58877766642222222345566666665555555443222 6799999988776444
No 19
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.92 E-value=9.1e-25 Score=234.98 Aligned_cols=215 Identities=16% Similarity=0.118 Sum_probs=148.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhh--hhHHHHHHHHHHhcccccccchhh-hhhhccc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--LDEEVAALHLEHLGVKLTKLTEDQ-AKYLDIM 345 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~--L~r~i~~~~l~~lgv~~~~~~~~~-~~~~g~e 345 (718)
-|-|...|.|...++.. +++.+|+.|++++....+.++.++-++. +.|++...+-.. +...|+ ..+.|.+
T Consensus 67 Lk~I~~~g~Gvd~id~~-~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~------~~g~W~~~~~~g~e 139 (324)
T COG0111 67 LKAIGRAGAGVDNIDLE-AATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQ------RRGEWDRKAFRGTE 139 (324)
T ss_pred ceEEEEccccccccCHH-HHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHH------HcCCcccccccccc
Confidence 34455555555555544 6788899999888777777666666643 345443332111 122233 3567889
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEH 421 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~ 421 (718)
|.||||||||+|+||+.+|++|++|||+|++||+...+.......++.+.+|++++++||||+++ ..|+|||+++.
T Consensus 140 l~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~ 219 (324)
T COG0111 140 LAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEE 219 (324)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHH
Confidence 99999999999999999999999999999999774444333333455677899999999999986 46899999999
Q ss_pred HhcCCCCeEEEEcCCCCccccHHHHhccccceeeec-CCcccCccccchhhHHHHhhhcccccccccccccCCccccc
Q psy7896 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVK-PQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLV 498 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~-P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~ 498 (718)
|++||+|++|||+|||. -+|.++|.+. ++...+. ..+||++.|..- +..+.+-.+|++.|||.++.+..
T Consensus 220 ~a~MK~gailIN~aRG~-vVde~aL~~A-L~~G~i~gA~lDVf~~EPl~------~~~pL~~~pnV~~TPHia~~T~e 289 (324)
T COG0111 220 LAKMKPGAILINAARGG-VVDEDALLAA-LDSGKIAGAALDVFEEEPLP------ADSPLWDLPNVILTPHIGGSTDE 289 (324)
T ss_pred HhhCCCCeEEEECCCcc-eecHHHHHHH-HHcCCcceEEecCCCCCCCC------CCChhhcCCCeEECCcccccCHH
Confidence 99999999999999996 4777766653 1222221 333343333211 11233344889999997766543
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.90 E-value=5.8e-23 Score=224.79 Aligned_cols=259 Identities=16% Similarity=0.107 Sum_probs=167.9
Q ss_pred cEEEEEecCCCChhHH--HHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896 270 KVAVVAGYGDVGKGCA--QSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA 347 (718)
Q Consensus 270 k~vvViGyG~vG~~~A--~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~ 347 (718)
.++..||.-.+|.+.. .+++++|+.|+.+.......+..++-+..+ .+. +..+.+|.
T Consensus 57 ~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL----------~l~-----------r~~g~~L~ 115 (378)
T PRK15438 57 KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLL----------MLA-----------ERDGFSLH 115 (378)
T ss_pred CCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHH----------HHh-----------ccCCCCcC
Confidence 4455555544554442 367899999997654444333333333221 111 11367899
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC---C-----CCCCcCH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT---G-----CKDIIRG 419 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at---g-----t~~lI~~ 419 (718)
||||||||+|+||+.+|++|++|||+|++||+. +... .....+.++++++++||||++++ . |.|+|++
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~--~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~ 191 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP--RADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE 191 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc--cccc--ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH
Confidence 999999999999999999999999999999742 2111 12234679999999999999862 2 8899999
Q ss_pred HHHhcCCCCeEEEEcCCCCccccHHHHhc---------cccceeeecCC--------c-ccCccccchhhHHHHh-----
Q psy7896 420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDK---------NAVEKVNVKPQ--------V-SPTSRTKHLTTEALLA----- 476 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~---------~~l~~~~v~P~--------V-~v~s~e~~~~~eal~n----- 476 (718)
+.|++||+|++|||+|||. .+|.++|.+ .++|+++.+|. + ..|||.+.++.|...+
T Consensus 192 ~~l~~mk~gailIN~aRG~-vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~~~~~~~~ 270 (378)
T PRK15438 192 KLIRSLKPGAILINACRGA-VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGKARGTTQV 270 (378)
T ss_pred HHHhcCCCCcEEEECCCch-hcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHHHHHHHHH
Confidence 9999999999999999996 477666553 14688888773 2 3678888776555432
Q ss_pred ------hhcccccccccccccC---C-----c----------cccccccc-c-hhhcccchhhhHHHHhcChHHHHHHHH
Q psy7896 477 ------TCNSLFKYSLVNTIHE---A-----P----------TLLVHLST-D-IKLAEWGRKTIIMAENEMPGLMALRRK 530 (718)
Q Consensus 477 ------~~~~~~~~nlv~~~h~---~-----a----------~~~~Y~i~-D-~~La~~G~~kI~wa~~~MP~L~~Lr~~ 530 (718)
..+.........++.. . . ....|+++ | ..|-... ..-..|+.|||+
T Consensus 271 ~~~l~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~~yd~~~dd~~~r~~~--------~~~~~Fd~lRk~ 342 (378)
T PRK15438 271 FEAYSKFIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVA--------GIPGEFDKLRKN 342 (378)
T ss_pred HHHHHHHHcCccccchhccCCcccccccccCCcCCHHHHHHHHHHhCChHhHHHHHHHhc--------cCccHHHHHhhc
Confidence 1111100111111110 0 0 01456664 2 3331111 133479999999
Q ss_pred hcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEe
Q psy7896 531 YGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQW 568 (718)
Q Consensus 531 f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~ 568 (718)
|..+++|++.++. .. .+.....|.++|+++..
T Consensus 343 y~~rre~~~~~~~-----~~-~~~~~~~~~~lg~~~~~ 374 (378)
T PRK15438 343 YLERREWSSLYVI-----CD-DASAASLLCKLGFNAVH 374 (378)
T ss_pred CCccccccceeec-----CC-chHHHHHHHHcCccccc
Confidence 9999999999993 11 23445688999998643
No 21
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.89 E-value=1.2e-22 Score=218.82 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=142.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchh-hhhhhccc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTED-QAKYLDIM 345 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~-~~~~~g~e 345 (718)
-|-|...|.|..+.+.. +++++|+.|+.+.......+..++-++ .+.|++...+- .++.+.|... ...+.|.+
T Consensus 67 Lk~I~~~g~G~d~id~~-~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~---~~~~g~w~~~~~~~~~g~~ 142 (323)
T PRK15409 67 LRAASTISVGYDNFDVD-ALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAE---RVKAGEWTASIGPDWFGTD 142 (323)
T ss_pred CeEEEECceecccccHH-HHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHH---HHHcCCCcccCccccccCC
Confidence 34455555555555554 678999999987654444444444443 44565533321 1112223211 11235789
Q ss_pred ccCcEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGE 420 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e 420 (718)
|.||||||||+|+||+.+|++++ +|||+|+++++.+... .....|....++++++++||+|+++ +.|+|+|+++
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~ 221 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAE 221 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHH
Confidence 99999999999999999999998 9999999997654222 1223466778999999999999986 4689999999
Q ss_pred HHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccc
Q psy7896 421 HFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLL 497 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~ 497 (718)
.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++. -.+|++.|||.++.+.
T Consensus 222 ~l~~mk~ga~lIN~aRG~-vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~------~~~nvilTPHia~~t~ 291 (323)
T PRK15409 222 QFAKMKSSAIFINAGRGP-VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLL------SLPNVVAVPHIGSATH 291 (323)
T ss_pred HHhcCCCCeEEEECCCcc-ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhh------cCCCEEEcCcCCCCcH
Confidence 999999999999999996 477776665321111112234444443221112222 2389999999776543
No 22
>KOG0068|consensus
Probab=99.89 E-value=5.3e-23 Score=216.96 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=131.7
Q ss_pred EEEEEecCCCChhH--HHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896 271 VAVVAGYGDVGKGC--AQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML 346 (718)
Q Consensus 271 ~vvViGyG~vG~~~--A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL 346 (718)
+++++|.-.+|.+. ..++.++|+-|..++....+++..+.-|+ .+.|++.... .....-.|.+..++|.+|
T Consensus 70 ~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~-----~s~k~g~wnr~~~~G~el 144 (406)
T KOG0068|consen 70 GLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQAS-----ASMKEGKWNRVKYLGWEL 144 (406)
T ss_pred CeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhh-----eeeecCceeecceeeeEE
Confidence 34445443333333 13569999999988888887777766664 3456553332 222223445677889999
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHF 422 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l 422 (718)
.|||+||+|+|+||+.+|++++++||+|+.||+-+. ..++...|+++++++|++..||||+++ +.|.++++.+.|
T Consensus 145 ~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tf 223 (406)
T KOG0068|consen 145 RGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETF 223 (406)
T ss_pred eccEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHH
Confidence 999999999999999999999999999999965432 234456799999999999999999986 468999999999
Q ss_pred hcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 423 LQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
++||+|+++||++||. -+|.++|.+
T Consensus 224 A~mKkGVriIN~aRGG-vVDe~ALv~ 248 (406)
T KOG0068|consen 224 AKMKKGVRIINVARGG-VVDEPALVR 248 (406)
T ss_pred HHhhCCcEEEEecCCc-eechHHHHH
Confidence 9999999999999996 588776655
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.89 E-value=3.7e-22 Score=218.95 Aligned_cols=263 Identities=16% Similarity=0.154 Sum_probs=166.1
Q ss_pred EEEEEecCCCChhH--HHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccC
Q psy7896 271 VAVVAGYGDVGKGC--AQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348 (718)
Q Consensus 271 ~vvViGyG~vG~~~--A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~G 348 (718)
++..|+.-.+|.+. ..+++++|+.|+.+.......+..++-+..+ .+. +..+.++.|
T Consensus 58 ~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL----------~l~-----------r~~g~~l~g 116 (381)
T PRK00257 58 RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLL----------TLA-----------EREGVDLAE 116 (381)
T ss_pred CCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHH----------HHh-----------cccCCCcCc
Confidence 34444444444443 2367999999997654333333332222211 111 124678999
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc---C-----CCCCCcCHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT---T-----GCKDIIRGE 420 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a---t-----gt~~lI~~e 420 (718)
|||||||+|+||+.+|+++++||++|++||+.... ...+..+.+++|++++||+|+++ | .|+|+|+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~----~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~ 192 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQE----AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA 192 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccc----cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH
Confidence 99999999999999999999999999999753221 11234567999999999999986 2 378999999
Q ss_pred HHhcCCCCeEEEEcCCCCccccHHHHhc---------cccceeeecCC---------cccCccccchhhHHHHhh-----
Q psy7896 421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK---------NAVEKVNVKPQ---------VSPTSRTKHLTTEALLAT----- 477 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~---------~~l~~~~v~P~---------V~v~s~e~~~~~eal~n~----- 477 (718)
.|++||+|++|||+|||. .+|.++|.+ .++|+++.+|. +..|||.+.++.|...+.
T Consensus 193 ~l~~mk~gailIN~aRG~-vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~~r~~~~~~ 271 (381)
T PRK00257 193 FLASLRPGAWLINASRGA-VVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGKARGTAQIY 271 (381)
T ss_pred HHhcCCCCeEEEECCCCc-ccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHHHHHHHHHH
Confidence 999999999999999996 477666553 13688877664 346788887765543331
Q ss_pred ------hcccccccccccccCC----------c---------cccccccc-c-hhhcccchhhhHHHHhcChHHHHHHHH
Q psy7896 478 ------CNSLFKYSLVNTIHEA----------P---------TLLVHLST-D-IKLAEWGRKTIIMAENEMPGLMALRRK 530 (718)
Q Consensus 478 ------~~~~~~~nlv~~~h~~----------a---------~~~~Y~i~-D-~~La~~G~~kI~wa~~~MP~L~~Lr~~ 530 (718)
.+.....++..++... . ....|+++ | ..|-..-... ....-..|+.|||+
T Consensus 272 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yd~~~dd~~~r~~~~~~---~~~~~~~Fd~lRk~ 348 (381)
T PRK00257 272 QALCRFFGIPARVSLTDLLPPPWLAQIDLDASADPAWALATLCRAVYDPRRDDAAFRRSLTGD---VAQQRAAFDALRKH 348 (381)
T ss_pred HHHHHHHcCCCccchhccCCCccccccccccCCCCHHHHHHHHHHhCChHHHHHHHHHhhccc---cccchhHHHHHHhc
Confidence 1111111222221100 0 01456664 2 3331110000 01133479999999
Q ss_pred hcccccCCceEEEeeecchhhHHHHHHHHHHcCCeE
Q psy7896 531 YGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEV 566 (718)
Q Consensus 531 f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v 566 (718)
|+.+++|++.++.. +...+.....|.++|+++
T Consensus 349 y~~rre~~~~~~~~----~~~~~~~~~~~~~lg~~~ 380 (381)
T PRK00257 349 YPLRREIEGLRVRL----TGESPELAQLVRALGAQL 380 (381)
T ss_pred CCccccccceeeec----cCCchHHHHHHHHcCCcc
Confidence 99999999998832 112234456888899864
No 24
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.89 E-value=1.4e-22 Score=217.03 Aligned_cols=218 Identities=19% Similarity=0.154 Sum_probs=143.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh----hhh
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA----KYL 342 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~----~~~ 342 (718)
-|-|...|.|....+.. +++++|+.|+.+.......+..++-+ +.+.|++....-. ++.+.|..... ...
T Consensus 64 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~---~~~g~w~~~~~~~~~~~~ 139 (311)
T PRK08410 64 LKLICITATGTNNVDIE-YAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY---VKSGEYSESPIFTHISRP 139 (311)
T ss_pred CeEEEEcccccccccHH-HHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH---HHcCCCCcCCCccccCcc
Confidence 34555556665555554 67899999998765444444444444 4445655332211 11122221100 012
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcC
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIR 418 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~ 418 (718)
+.+|.||||||||+|+||+.+|+++++|||+|++||+.+.. ...++..+++++++++||+|+++ ..|+|+|+
T Consensus 140 ~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~----~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 140 LGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN----KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc----cccCceeecHHHHhhcCCEEEEeCCCCchhhcccC
Confidence 57899999999999999999999999999999999865422 12467778999999999999986 46899999
Q ss_pred HHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccccc
Q psy7896 419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLV 498 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~ 498 (718)
++.|++||+|++|||+|||. -+|.++|.+.. +...+...+||++.|..-...++.+. ...+|++.|||.+..+..
T Consensus 216 ~~~~~~Mk~~a~lIN~aRG~-vVDe~AL~~AL-~~g~i~AaLDV~~~EP~~~~~pL~~~---~~~~NvilTPH~a~~t~e 290 (311)
T PRK08410 216 YKELKLLKDGAILINVGRGG-IVNEKDLAKAL-DEKDIYAGLDVLEKEPMEKNHPLLSI---KNKEKLLITPHIAWASKE 290 (311)
T ss_pred HHHHHhCCCCeEEEECCCcc-ccCHHHHHHHH-HcCCeEEEEecCCCCCCCCCChhhcc---CCCCCEEECCccccCCHH
Confidence 99999999999999999996 57877776532 22222234555555532111112110 012699999998766543
Q ss_pred c
Q psy7896 499 H 499 (718)
Q Consensus 499 Y 499 (718)
.
T Consensus 291 ~ 291 (311)
T PRK08410 291 A 291 (311)
T ss_pred H
Confidence 3
No 25
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.87 E-value=8e-22 Score=211.81 Aligned_cols=214 Identities=16% Similarity=0.116 Sum_probs=136.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh----hhhh
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ----AKYL 342 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~----~~~~ 342 (718)
-|-|...|.|....+.. .++++|+.|+.+.......+..++-+ +.+.|++...+-. .+.+.|..+. ..+.
T Consensus 67 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~W~~~~~~~~~~~~ 142 (317)
T PRK06487 67 LKLILVAATGTNNVDLA-AARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQA---VAAGRWQQSSQFCLLDFP 142 (317)
T ss_pred CeEEEEcCccccccCHH-HHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHH---HHcCCCccCcccccccCc
Confidence 34555556665555554 67899999998765443444433334 3444554333211 1112222111 1123
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcC
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIR 418 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~ 418 (718)
+.+|.||||||||+|+||+.+|+++++|||+|+++++.+.. .....++++|++++||+|+++ +.|+|+|+
T Consensus 143 ~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 143 IVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------ccccccCHHHHHHhCCEEEECCCCChHHhcCcC
Confidence 57899999999999999999999999999999999864321 123456899999999999986 46899999
Q ss_pred HHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccc
Q psy7896 419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLL 497 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~ 497 (718)
++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++.+ .-.+|++.|||.+..+.
T Consensus 217 ~~~~~~mk~ga~lIN~aRG~-vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~----~~~pnvilTPHia~~t~ 290 (317)
T PRK06487 217 ARELALMKPGALLINTARGG-LVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLA----PDIPRLIVTPHSAWGSR 290 (317)
T ss_pred HHHHhcCCCCeEEEECCCcc-ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhh----cCCCCEEECCccccCCH
Confidence 99999999999999999996 4777666553111111112233333332111011111 01379999999876543
No 26
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.87 E-value=9.1e-22 Score=194.48 Aligned_cols=149 Identities=20% Similarity=0.252 Sum_probs=105.9
Q ss_pred hhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCC
Q psy7896 338 QAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGC 413 (718)
Q Consensus 338 ~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt 413 (718)
.....+.++.|+||||||+|+||+.+|+++++|||+|+++|+.+.........++...+++|++++||+|+++ ..|
T Consensus 26 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 26 RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTT
T ss_pred CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhcccccc
Confidence 3455689999999999999999999999999999999999988765443445678889999999999999986 458
Q ss_pred CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCC
Q psy7896 414 KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEA 493 (718)
Q Consensus 414 ~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~ 493 (718)
+++|+++.|++||+|++|||+|||. -+|.++|.+..-+.....-.+||++.|..-...++ +-.+|++.|||.+
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~-~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l------~~~~nvi~TPH~a 178 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGE-LVDEDALLDALESGKIAGAALDVFEPEPLPADSPL------WDLPNVILTPHIA 178 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGG-GB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHH------HTSTTEEEESS-T
T ss_pred ceeeeeeeeeccccceEEEeccchh-hhhhhHHHHHHhhccCceEEEECCCCCCCCCCChH------HcCCCEEEeCccC
Confidence 8999999999999999999999996 57766665421111111122333333321111223 2348999999964
No 27
>PLN02306 hydroxypyruvate reductase
Probab=99.87 E-value=1.3e-21 Score=215.14 Aligned_cols=216 Identities=14% Similarity=0.109 Sum_probs=140.5
Q ss_pred cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh-hhhcccc
Q psy7896 270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA-KYLDIML 346 (718)
Q Consensus 270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~-~~~g~eL 346 (718)
|.+...|.|....+.. +++++|+.|+.+.......+..++-+ +.+.|++...+-. ++.+.|..|.. ...|.+|
T Consensus 88 k~I~~~~~G~D~iD~~-aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~---~~~g~w~~~~~~~~~g~~L 163 (386)
T PLN02306 88 KAFSNMAVGYNNVDVE-AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF---MRAGLYEGWLPHLFVGNLL 163 (386)
T ss_pred eEEEECCcccccccHH-HHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH---HHcCCCccccccccCCcCC
Confidence 5566666666666655 56899999998765444444444444 4445655332211 11122322332 2357899
Q ss_pred cCcEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHH--hhcC------------ce-ecCHHHHhccCcEEEEc
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQA--SMEG------------YE-VTTMEEAAKEGGIFVTT 410 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a--~~~G------------~~-v~~Leell~~aDiIi~a 410 (718)
.||||||||+|+||+.+|++++ +|||+|++||+.+...... ...| +. ..+++|++++||||+++
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh 243 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLH 243 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEe
Confidence 9999999999999999999985 9999999998765322111 0111 12 35899999999999985
Q ss_pred ----CCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccc
Q psy7896 411 ----TGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSL 486 (718)
Q Consensus 411 ----tgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nl 486 (718)
..|+|+|+++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|.. ..+++.+ .+|+
T Consensus 244 ~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~-lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~------~pNV 315 (386)
T PLN02306 244 PVLDKTTYHLINKERLALMKKEAVLVNASRGP-VIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLAD------MKNA 315 (386)
T ss_pred CCCChhhhhhcCHHHHHhCCCCeEEEECCCcc-ccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhh------CCCE
Confidence 4689999999999999999999999996 47766665431111111223344444421 1112222 3799
Q ss_pred cccccCCcccc
Q psy7896 487 VNTIHEAPTLL 497 (718)
Q Consensus 487 v~~~h~~a~~~ 497 (718)
+.|||.++.+.
T Consensus 316 ilTPHiag~T~ 326 (386)
T PLN02306 316 VVVPHIASASK 326 (386)
T ss_pred EECCccccCcH
Confidence 99999876543
No 28
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.87 E-value=1.7e-21 Score=208.98 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=136.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh----hhhh
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ----AKYL 342 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~----~~~~ 342 (718)
-|-|...|.|..+.+.. .++++|+.|+.+.......+..++-+ +.+.|++...+-.. +.+.|.... ..+.
T Consensus 66 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~---~~~~W~~~~~~~~~~~~ 141 (314)
T PRK06932 66 LKLIAITATGTNNVDLV-AAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQ---LSDRWATCKQFCYFDYP 141 (314)
T ss_pred CeEEEEecccccccCHH-HHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHH---HcCCCCcCccccccCCc
Confidence 45566666666655554 66899999998765444444444334 34445543322111 112221110 0123
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcC
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIR 418 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~ 418 (718)
+.+|.||||||||+|+||+.+|+++++|||+|+++++.+... . .....+++|++++||||+++ ..|+|+|+
T Consensus 142 ~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~---~--~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~ 216 (314)
T PRK06932 142 ITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV---C--REGYTPFEEVLKQADIVTLHCPLTETTQNLIN 216 (314)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc---c--ccccCCHHHHHHhCCEEEEcCCCChHHhcccC
Confidence 568999999999999999999999999999999997543211 1 12356899999999999986 45899999
Q ss_pred HHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccccc
Q psy7896 419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLV 498 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~ 498 (718)
++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++.+. ..-.+|++.|||.+..+..
T Consensus 217 ~~~l~~mk~ga~lIN~aRG~-~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~--~~~~pnvilTPHia~~t~e 293 (314)
T PRK06932 217 AETLALMKPTAFLINTGRGP-LVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQA--AKRLPNLLITPHIAWASDS 293 (314)
T ss_pred HHHHHhCCCCeEEEECCCcc-ccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHh--hcCCCCEEECCccccCcHH
Confidence 99999999999999999996 47776665531111111122333333311001111100 0013799999998766433
No 29
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.86 E-value=1.1e-21 Score=217.28 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=118.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh-hhhccc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA-KYLDIM 345 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~-~~~g~e 345 (718)
-|-|...|.|....+.. +++++|+.|+.+.......+..++-+ +.+.|++....-. ++.+ .|.+ .+.+.+
T Consensus 76 Lk~I~~~~~G~d~id~~-~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~---~~~g---~w~~~~~~~~~ 148 (409)
T PRK11790 76 LVAIGCFCIGTNQVDLD-AAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK---AHRG---GWNKSAAGSFE 148 (409)
T ss_pred CeEEEECceecccccHH-HHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH---HHcC---cccccccCccc
Confidence 34455555555555554 66899999998654444444433334 3445654332211 1111 2222 235789
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTT----TGCKDIIRGE 420 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~a----tgt~~lI~~e 420 (718)
|.||||||||+|+||+.+|+++++|||+|++||+.+... ..++. +.+++|++++||+|+++ ..|+|+|+++
T Consensus 149 L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~ 224 (409)
T PRK11790 149 VRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE 224 (409)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence 999999999999999999999999999999998654321 12333 45899999999999986 3589999999
Q ss_pred HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
.|++||+|++|||+|||. -+|.++|.+
T Consensus 225 ~l~~mk~ga~lIN~aRG~-~vde~aL~~ 251 (409)
T PRK11790 225 ELALMKPGAILINASRGT-VVDIDALAD 251 (409)
T ss_pred HHhcCCCCeEEEECCCCc-ccCHHHHHH
Confidence 999999999999999996 477666654
No 30
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.86 E-value=2.3e-20 Score=212.77 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=120.6
Q ss_pred cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896 270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA 347 (718)
Q Consensus 270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~ 347 (718)
|-|...|.|....+.. +++++|+.|+.+.......+..++-+ +.+.|++...+-. .+.+.|. +..+.|.+|.
T Consensus 64 k~I~~~~~G~d~id~~-~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~W~--~~~~~g~~l~ 137 (525)
T TIGR01327 64 KVIGRAGVGVDNIDIE-AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADAS---LKEGEWD--RKAFMGTELY 137 (525)
T ss_pred eEEEECCcccchhcHH-HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHH---HHcCCcc--ccccCccccC
Confidence 4444445555444444 67899999998765444444444334 3445655333211 1111221 2235688999
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTT----TGCKDIIRGEHF 422 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~a----tgt~~lI~~e~l 422 (718)
||||||||+|+||+.+|++|++|||+|++||+.... ..+...|+... +++|++++||+|+++ ..|+++|+++.|
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l 216 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEEL 216 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHH
Confidence 999999999999999999999999999999864322 12233466654 799999999999986 358999999999
Q ss_pred hcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 423 LQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
++||+|++|||+|||. -+|.++|.+
T Consensus 217 ~~mk~ga~lIN~aRG~-~vde~aL~~ 241 (525)
T TIGR01327 217 AKMKKGVIIVNCARGG-IIDEAALYE 241 (525)
T ss_pred hcCCCCeEEEEcCCCc-eeCHHHHHH
Confidence 9999999999999996 477666554
No 31
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.85 E-value=1.4e-20 Score=203.59 Aligned_cols=218 Identities=15% Similarity=0.089 Sum_probs=144.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccch----hhh-hh
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTE----DQA-KY 341 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~----~~~-~~ 341 (718)
-|-|...|.|....+.. +++++|+.|+.+.......+..++-+ +.+.|++....-.. +.+.|.. +.. .+
T Consensus 68 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~---~~g~W~~~~~~~~~~~~ 143 (333)
T PRK13243 68 LRIVANYAVGYDNIDVE-EATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFV---RSGEWKRRGVAWHPLMF 143 (333)
T ss_pred CeEEEecCccccccCHH-HHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHH---HcCCCCccccccccccc
Confidence 35555556666555554 67899999998655444444444444 34446553332111 1122211 111 23
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCc
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDII 417 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI 417 (718)
.|.+|.||||||||+|+||+.+|++|++|||+|++||+.+... .....|....++++++++||+|+++. .|+++|
T Consensus 144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 144 LGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMI 222 (333)
T ss_pred cccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhcc
Confidence 5789999999999999999999999999999999999876433 22334666779999999999999873 478999
Q ss_pred CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccc
Q psy7896 418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLL 497 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~ 497 (718)
+++.|+.||+|++|||+|||. .+|.++|.+..-+.......+||++.|... ..++ +-.+|++.|||.+..+.
T Consensus 223 ~~~~~~~mk~ga~lIN~aRg~-~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL------~~~~nvilTPHia~~t~ 294 (333)
T PRK13243 223 NEERLKLMKPTAILVNTARGK-VVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEEL------FSLKNVVLAPHIGSATF 294 (333)
T ss_pred CHHHHhcCCCCeEEEECcCch-hcCHHHHHHHHHcCCeEEEEeccCCCCCCC-Cchh------hcCCCEEECCcCCcCHH
Confidence 999999999999999999996 477766655321111112234444444221 1122 23379999999887654
Q ss_pred cc
Q psy7896 498 VH 499 (718)
Q Consensus 498 ~Y 499 (718)
..
T Consensus 295 e~ 296 (333)
T PRK13243 295 EA 296 (333)
T ss_pred HH
Confidence 33
No 32
>PLN02928 oxidoreductase family protein
Probab=99.85 E-value=1e-20 Score=205.69 Aligned_cols=214 Identities=17% Similarity=0.130 Sum_probs=134.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc---hhhhhhh--hhhhhhhHHHHHHHHHHhcccccccchhhhhhhc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP---INALQAS--MEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLD 343 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp---~r~v~Av--aeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g 343 (718)
-|-|...|.|..+.+.. .++++|+.|+.+.... ...+..+ +..+.+.|++....-. .+. ..|. ...+
T Consensus 83 Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~---~~~---~~w~-~~~~ 154 (347)
T PLN02928 83 MKLIMQFGVGLEGVDVD-AATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQIS---LKA---RRLG-EPIG 154 (347)
T ss_pred ceEEEECCcccCcCcHH-HHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHH---HHc---CCcc-cccc
Confidence 34555556665555554 6688999998765321 1122222 2233444544222110 011 1122 1346
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH------------hhcCceecCHHHHhccCcEEEEc-
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA------------SMEGYEVTTMEEAAKEGGIFVTT- 410 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a------------~~~G~~v~~Leell~~aDiIi~a- 410 (718)
.+|.||||||||+|+||+.+|++|++|||+|++|++........ ...+....+++|++++||+|+++
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 78999999999999999999999999999999998753221111 01122567899999999999986
Q ss_pred ---CCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccccccc
Q psy7896 411 ---TGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLV 487 (718)
Q Consensus 411 ---tgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv 487 (718)
..|+++|+++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++ +-.+|++
T Consensus 235 Plt~~T~~li~~~~l~~Mk~ga~lINvaRG~-lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL------~~~~nvi 307 (347)
T PLN02928 235 TLTKETAGIVNDEFLSSMKKGALLVNIARGG-LLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPI------LKHPNVI 307 (347)
T ss_pred CCChHhhcccCHHHHhcCCCCeEEEECCCcc-ccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChh------hcCCCEE
Confidence 4589999999999999999999999996 47777666531111111123333333321111122 2238999
Q ss_pred ccccCCcccc
Q psy7896 488 NTIHEAPTLL 497 (718)
Q Consensus 488 ~~~h~~a~~~ 497 (718)
.|||.+..+.
T Consensus 308 iTPHia~~t~ 317 (347)
T PLN02928 308 ITPHVAGVTE 317 (347)
T ss_pred ECCcCCCChH
Confidence 9999876543
No 33
>PRK07574 formate dehydrogenase; Provisional
Probab=99.84 E-value=1.2e-20 Score=207.23 Aligned_cols=211 Identities=12% Similarity=0.060 Sum_probs=139.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML 346 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL 346 (718)
-|-|...|.|...++.. +++++|+.|+.+.......+...+-+ +.+.|++...+-.. +.+.|........+.+|
T Consensus 115 LK~I~~~g~G~D~id~~-aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~---~~g~W~~~~~~~~~~~L 190 (385)
T PRK07574 115 LKLAITAGIGSDHVDLQ-AASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQA---VEGGWNIADCVSRSYDL 190 (385)
T ss_pred CcEEEECCcccccccHH-HHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHH---HhCCCCcccccccceec
Confidence 34555555555555554 56899999998755444444433333 44456553332111 11122111111246789
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEc----CCCCCCcCHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTT----TGCKDIIRGEH 421 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~a----tgt~~lI~~e~ 421 (718)
.||||||||+|+||+.+|++|++|||+|+++|+.+.........|.. ..+++|++++||+|+++ ..|+++|+++.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~ 270 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADV 270 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHH
Confidence 99999999999999999999999999999998765332222233544 46899999999999986 34789999999
Q ss_pred HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccC
Q psy7896 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHE 492 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~ 492 (718)
|++||+|++|||+|||. .+|.++|.+. ++|++..+|.. ...++ +-.+|++.|||.
T Consensus 271 l~~mk~ga~lIN~aRG~-iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp---------~d~pL------~~~pNvilTPHi 334 (385)
T PRK07574 271 LSRMKRGSYLVNTARGK-IVDRDAVVRALESGHLAGYAGDVWFPQPAP---------ADHPW------RTMPRNGMTPHI 334 (385)
T ss_pred HhcCCCCcEEEECCCCc-hhhHHHHHHHHHhCCccEEEEecCCCCCCC---------CCChH------HhCCCeEECCcc
Confidence 99999999999999996 4676665542 24555544422 11112 223789999997
Q ss_pred Ccccccc
Q psy7896 493 APTLLVH 499 (718)
Q Consensus 493 ~a~~~~Y 499 (718)
+..+...
T Consensus 335 ag~T~e~ 341 (385)
T PRK07574 335 SGTTLSA 341 (385)
T ss_pred ccCcHHH
Confidence 7664433
No 34
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.83 E-value=1.1e-19 Score=207.32 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=122.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML 346 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL 346 (718)
-|-|...|.|..+.+.. +++++|+.|+.+.......+..++-+ +.+.|++...+-. .+.+.|. +..+.+.+|
T Consensus 65 Lk~I~~~~~G~d~id~~-~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~---~~~g~W~--~~~~~g~~l 138 (526)
T PRK13581 65 LKVIGRAGVGVDNVDVP-AATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHAS---LKAGKWE--RKKFMGVEL 138 (526)
T ss_pred CeEEEECCcccccccHH-HHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHH---HHcCCCC--ccCcccccc
Confidence 34445555555555544 66899999998764444444433334 4445655333211 1112221 123568899
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHF 422 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l 422 (718)
.||||||||+|+||+.+|+++++|||+|++||+.+... .+...|+...+++|++++||+|+++ ..|+++|+++.|
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l 217 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPE-RAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEEL 217 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh-HHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHH
Confidence 99999999999999999999999999999998754322 2234577777999999999999986 357899999999
Q ss_pred hcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 423 LQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
++||+|++|||+|||. -+|.++|.+
T Consensus 218 ~~mk~ga~lIN~aRG~-~vde~aL~~ 242 (526)
T PRK13581 218 AKMKPGVRIINCARGG-IIDEAALAE 242 (526)
T ss_pred hcCCCCeEEEECCCCc-eeCHHHHHH
Confidence 9999999999999996 467666544
No 35
>PLN03139 formate dehydrogenase; Provisional
Probab=99.83 E-value=3.3e-20 Score=203.79 Aligned_cols=211 Identities=12% Similarity=0.073 Sum_probs=139.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML 346 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL 346 (718)
-|-|...|.|....+.. +++++|+.|+.+.......+..++-+ +.+.|++...+-.. +.+.|........+.+|
T Consensus 122 LK~I~~~g~G~D~iDl~-aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~---~~g~W~~~~~~~~~~~L 197 (386)
T PLN03139 122 LELLLTAGIGSDHIDLP-AAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQV---VSGEWNVAGIAYRAYDL 197 (386)
T ss_pred ccEEEECCccccccCHH-HHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHH---HhCCCccccccCCCcCC
Confidence 34455555555544444 56889999997654444444433333 34445543332111 11222111112346899
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEc----CCCCCCcCHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTT----TGCKDIIRGEH 421 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~a----tgt~~lI~~e~ 421 (718)
.||||||||+|+||+.+|++|++|||+|++||+.+.........|+.. .++++++++||+|+++ ..|+++|+++.
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 277 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKER 277 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHH
Confidence 999999999999999999999999999999987654332222345544 4899999999999986 34789999999
Q ss_pred HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccC
Q psy7896 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHE 492 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~ 492 (718)
|+.||+|++|||+|||. .+|.++|.+. ++|++..+|.- ...+.+..+|++.|||.
T Consensus 278 l~~mk~ga~lIN~aRG~-iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp---------------~d~pL~~~pNvilTPHi 341 (386)
T PLN03139 278 IAKMKKGVLIVNNARGA-IMDTQAVADACSSGHIGGYGGDVWYPQPAP---------------KDHPWRYMPNHAMTPHI 341 (386)
T ss_pred HhhCCCCeEEEECCCCc-hhhHHHHHHHHHcCCceEEEEcCCCCCCCC---------------CCChhhcCCCeEEcccc
Confidence 99999999999999996 4676665542 24555554432 11112233799999998
Q ss_pred Ccccccc
Q psy7896 493 APTLLVH 499 (718)
Q Consensus 493 ~a~~~~Y 499 (718)
+..+...
T Consensus 342 ag~t~~~ 348 (386)
T PLN03139 342 SGTTIDA 348 (386)
T ss_pred cccCHHH
Confidence 7765443
No 36
>KOG0069|consensus
Probab=99.81 E-value=2e-19 Score=192.99 Aligned_cols=209 Identities=19% Similarity=0.148 Sum_probs=147.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh-hhhcc
Q psy7896 268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA-KYLDI 344 (718)
Q Consensus 268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~-~~~g~ 344 (718)
..|.++..|.|-..+++. +++++|++|+.+.......++..+.+ +.+.|+....+-... .++| .|.. ...|.
T Consensus 84 ~lK~i~t~~vG~D~vDl~-a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~---~g~w-~~~~~~~~g~ 158 (336)
T KOG0069|consen 84 NLKLIVTMSVGYDHVDLE-AARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVR---NGGW-GWAGGWPLGY 158 (336)
T ss_pred CeeEEEEeecccchhhHH-HHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhh---cCCc-cccCCccccc
Confidence 347777777777666665 67999999998876666655544443 344454433321111 1122 1122 23478
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGE 420 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e 420 (718)
.+.||||||+|+|+||+.+|++|++||+.+.++.+.+.+..++...+.+..++++++++||+||++ ..|+|+||++
T Consensus 159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~ 238 (336)
T KOG0069|consen 159 DLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKK 238 (336)
T ss_pred cccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHH
Confidence 899999999999999999999999999878887776665555545555678999999999999986 3578999999
Q ss_pred HHhcCCCCeEEEEcCCCCccccHH----HHhcc-----ccceeeecCCcccCccccchhhHHHHhhhccccccccccccc
Q psy7896 421 HFLQMRDDAIVCNIGHFDCEIQVS----WLDKN-----AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIH 491 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd~Eid~~----aL~~~-----~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h 491 (718)
.|++||+|++|||+|||. -+|.+ +|.+. ++|+++.+|.+ .+.++.. .|++.+||
T Consensus 239 ~~~~mk~g~vlVN~aRG~-iide~~l~eaL~sG~i~~aGlDVf~~EP~~----------~~~l~~~------dnvv~~PH 301 (336)
T KOG0069|consen 239 FIEKMKDGAVLVNTARGA-IIDEEALVEALKSGKIAGAGLDVFEPEPPV----------DHPLLTL------DNVVILPH 301 (336)
T ss_pred HHHhcCCCeEEEeccccc-cccHHHHHHHHhcCCcccccccccCCCCCC----------Ccchhcc------cceeEecc
Confidence 999999999999999996 35544 45442 46777777744 2222222 67889999
Q ss_pred CCccccc
Q psy7896 492 EAPTLLV 498 (718)
Q Consensus 492 ~~a~~~~ 498 (718)
.+.++..
T Consensus 302 igs~t~~ 308 (336)
T KOG0069|consen 302 IGSATLE 308 (336)
T ss_pred cccCcHH
Confidence 8766533
No 37
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.77 E-value=2.6e-18 Score=185.71 Aligned_cols=221 Identities=13% Similarity=0.045 Sum_probs=139.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML 346 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL 346 (718)
-|-|...|.|....+.. .++++|+.|+.+.......+..++-+ +.+.|++....-. ++.+.|. |.....+.+|
T Consensus 70 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~~~~~-w~~~~~~~~l 144 (330)
T PRK12480 70 IKQIAQRTAGFDMYDLD-LAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERR---VQAHDFT-WQAEIMSKPV 144 (330)
T ss_pred ceEEEecccccchhhHH-HHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHH---HHhCCcc-cccccCcccc
Confidence 34555566666666554 66889999998765444444444434 4445665332211 1111121 2223457899
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCC----CCCCcCHHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTG----CKDIIRGEHF 422 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atg----t~~lI~~e~l 422 (718)
+|++|||||+|+||+.+|++|++||++|++||+++....... ....++++++++||+|+++.. |.++++++.|
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~---~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFL---TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhh---hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHH
Confidence 999999999999999999999999999999998764322110 123479999999999998732 5689999999
Q ss_pred hcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHH-------HhhhcccccccccccccCCcc
Q psy7896 423 LQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEAL-------LATCNSLFKYSLVNTIHEAPT 495 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal-------~n~~~~~~~~nlv~~~h~~a~ 495 (718)
+.||+|++|||+|||. .+|.++|.+..-+.......+||++.|...+.++. ......+-.+|++.|||.+..
T Consensus 222 ~~mk~gavlIN~aRG~-~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~ 300 (330)
T PRK12480 222 DHVKKGAILVNAARGA-VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFF 300 (330)
T ss_pred hcCCCCcEEEEcCCcc-ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCccccc
Confidence 9999999999999996 57776665531111111223344444432111000 000012233799999998766
Q ss_pred ccc
Q psy7896 496 LLV 498 (718)
Q Consensus 496 ~~~ 498 (718)
+..
T Consensus 301 t~~ 303 (330)
T PRK12480 301 SDE 303 (330)
T ss_pred HHH
Confidence 533
No 38
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.76 E-value=3e-18 Score=183.29 Aligned_cols=100 Identities=17% Similarity=0.274 Sum_probs=85.6
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc--eecCHHHHhccCcEEEEc----CCCCC
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--EVTTMEEAAKEGGIFVTT----TGCKD 415 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~--~v~~Leell~~aDiIi~a----tgt~~ 415 (718)
.+.+|.||||||||+|+||+.+|+++++|||+|+++++.+.. .|. ...++++++++||+|+++ +.|++
T Consensus 116 ~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 116 PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 467999999999999999999999999999999999876432 122 146899999999999986 45899
Q ss_pred CcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
+|+++.|++||+|++|||+|||. -+|.++|.+
T Consensus 190 li~~~~l~~mk~ga~lIN~sRG~-~vd~~aL~~ 221 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARAD-VVDKNDMLN 221 (303)
T ss_pred CcCHHHHhcCCCCeEEEECCCcc-ccCHHHHHH
Confidence 99999999999999999999996 467666654
No 39
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.76 E-value=3.6e-18 Score=183.37 Aligned_cols=147 Identities=14% Similarity=-0.005 Sum_probs=103.6
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCc
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDII 417 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI 417 (718)
.+.+++||||||||+|+||+.+|++|++|||+|+++++.+..... ........++++++++||+|+++ +.|+++|
T Consensus 130 ~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~-~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li 208 (312)
T PRK15469 130 PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG-VQSFAGREELSAFLSQTRVLINLLPNTPETVGII 208 (312)
T ss_pred CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-ceeecccccHHHHHhcCCEEEECCCCCHHHHHHh
Confidence 356899999999999999999999999999999999876532111 01112345899999999999986 3478999
Q ss_pred CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccc
Q psy7896 418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTL 496 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~ 496 (718)
+++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|.. ......+..+|++.|||.+..+
T Consensus 209 ~~~~l~~mk~ga~lIN~aRG~-vVde~aL~~aL~~g~i~gaalDVf~~EPl------~~~~pl~~~~nvi~TPHiag~t 280 (312)
T PRK15469 209 NQQLLEQLPDGAYLLNLARGV-HVVEDDLLAALDSGKVKGAMLDVFSREPL------PPESPLWQHPRVAITPHVAAVT 280 (312)
T ss_pred HHHHHhcCCCCcEEEECCCcc-ccCHHHHHHHHhcCCeeeEEecCCCCCCC------CCCChhhcCCCeEECCcCCCCc
Confidence 999999999999999999996 47776665531111111122334333321 1111223348999999977654
No 40
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.76 E-value=8.1e-18 Score=181.95 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=138.8
Q ss_pred cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896 270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA 347 (718)
Q Consensus 270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~ 347 (718)
|-|...|.|..+.+.. +++++|+.|+.+.......+..++-+ +.+.|++...+-.. +.+.|. |.....+.+|.
T Consensus 71 k~I~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~---~~~~~~-~~~~~~~~~l~ 145 (332)
T PRK08605 71 KQIAQRSAGFDTYDLE-LATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKV---REHDFR-WEPPILSRSIK 145 (332)
T ss_pred eEEEEcccccchhhHH-HHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHH---HhCCcc-cccccccceeC
Confidence 4455566666666655 67899999998765444444444444 34445543322111 111121 22334578999
Q ss_pred CcEEEEEecChhHHHHHHHH-HhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSL-RLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTT----GCKDIIRGEH 421 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l-~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~at----gt~~lI~~e~ 421 (718)
|++|||||+|+||+.+|++| ++||++|+++|+++..... .+... .++++++++||+|+++. .++++++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~ 222 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADL 222 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHH
Confidence 99999999999999999999 7999999999877643321 22333 48999999999999863 4688999999
Q ss_pred HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCcccc----chhhHHHHhhhcccccccccc
Q psy7896 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTK----HLTTEALLATCNSLFKYSLVN 488 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~----~~~~eal~n~~~~~~~~nlv~ 488 (718)
++.||+|++|||+|||. .+|.++|.+. ++|+++.+|.+.+..+.. ....+++ +-.+|++.
T Consensus 223 l~~mk~gailIN~sRG~-~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L------~~~~nvil 295 (332)
T PRK08605 223 FKHFKKGAVFVNCARGS-LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESL------INREDVIL 295 (332)
T ss_pred HhcCCCCcEEEECCCCc-ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHH------hcCCCEEE
Confidence 99999999999999996 5776665542 245555554221111100 0011112 22379999
Q ss_pred cccCCcccc
Q psy7896 489 TIHEAPTLL 497 (718)
Q Consensus 489 ~~h~~a~~~ 497 (718)
|||.+..+.
T Consensus 296 TPHia~~t~ 304 (332)
T PRK08605 296 TPHIAFYTD 304 (332)
T ss_pred CCcccccHH
Confidence 999876643
No 41
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.31 E-value=2.5e-11 Score=129.30 Aligned_cols=109 Identities=17% Similarity=0.313 Sum_probs=89.4
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec---CHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT---TMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~---~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+++|++++|+|+|+||+.+|+.|+++|++|+++++++.+...+...|+... +++++++++|+|+.+++. .++++
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-~ii~~ 224 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-LVLTA 224 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-HHhCH
Confidence 56899999999999999999999999999999999988755433333455433 467789999999998765 48899
Q ss_pred HHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896 420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE 452 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~ 452 (718)
+.++.||++++++|++....+.|.++.++.+..
T Consensus 225 ~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~ 257 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIK 257 (287)
T ss_pred HHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCE
Confidence 999999999999999998777888766665543
No 42
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.17 E-value=5.8e-11 Score=127.73 Aligned_cols=95 Identities=25% Similarity=0.334 Sum_probs=80.3
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC---CCCCCcCHH
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT---GCKDIIRGE 420 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at---gt~~lI~~e 420 (718)
..|+||||||||+|+||+++|++|+++|++|+++++.+.....+...|+.+.+++|+++.||+|+++. .++++++.+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence 46899999999999999999999999999999997543332334456888889999999999999874 457889989
Q ss_pred HHhcCCCCeEEEEcCCCC
Q psy7896 421 HFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd 438 (718)
.++.||+|++|+..-.|+
T Consensus 92 il~~MK~GaiL~f~hgfn 109 (335)
T PRK13403 92 VEENLREGQMLLFSHGFN 109 (335)
T ss_pred HHhcCCCCCEEEECCCcc
Confidence 999999999999876654
No 43
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.03 E-value=3.2e-09 Score=113.71 Aligned_cols=104 Identities=17% Similarity=0.280 Sum_probs=84.8
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec---CHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT---TMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~---~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+..+.|++|+|+|+|.+|+.+++.|+++|++|+++++++....++...|+... ++.+.++++|+|+.+++. .++++
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-~~i~~ 225 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-LVLTK 225 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-hhhhH
Confidence 46788999999999999999999999999999999998765444555676654 456788999999998764 57899
Q ss_pred HHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896 420 EHFLQMRDDAIVCNIGHFDCEIQVSWLD 447 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~ 447 (718)
+.++.|+++++++|++......|.++-+
T Consensus 226 ~~l~~~~~g~vIIDla~~pggtd~~~a~ 253 (296)
T PRK08306 226 EVLSKMPPEALIIDLASKPGGTDFEYAE 253 (296)
T ss_pred HHHHcCCCCcEEEEEccCCCCcCeeehh
Confidence 9999999999999998755445554333
No 44
>KOG0067|consensus
Probab=98.66 E-value=4.2e-08 Score=106.12 Aligned_cols=207 Identities=18% Similarity=0.156 Sum_probs=130.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccc---------ccc--chh
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKL---------TKL--TED 337 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~---------~~~--~~~ 337 (718)
-+.++-||+|....++- ++...|+-|+....+....+...... +++.+-++. +.+ ...
T Consensus 96 lRv~~rig~g~dn~dik-aAseL~iavC~ip~~~Ve~~a~stl~----------hIl~l~rrntw~cq~l~eg~~~q~~~ 164 (435)
T KOG0067|consen 96 LRVIVRIGSGYDNIDIK-AASELGIAVCNIPSDAVEETADSTLC----------HILNLYRRNTWLCQALREGTCTQGLE 164 (435)
T ss_pred hceeeeeccccchhhhh-hhhhheeeeecccchhHHHHHHHHHH----------HHHhhhcccchhhhhhcccceeechh
Confidence 45566688888877774 56788888876554444332222111 122111111 011 001
Q ss_pred hhh---hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEc---
Q psy7896 338 QAK---YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTT--- 410 (718)
Q Consensus 338 ~~~---~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~a--- 410 (718)
+.. .....++|.++|++|+|++|++++.++++||-.|+.||..-..-++ ...|++ +-++.+++-++|.++.+
T Consensus 165 q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~-~~lg~~rVytlqd~~~~sd~~S~hc~~ 243 (435)
T KOG0067|consen 165 QVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGID-KSLGLQRVYTLQDLLYQSDCVSLHCNL 243 (435)
T ss_pred hhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhh-hhcccceecccchhhhhccceeeeccc
Confidence 111 1134578999999999999999999999999999999644322222 223444 44799999999999986
Q ss_pred -CCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccccccccc
Q psy7896 411 -TGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNT 489 (718)
Q Consensus 411 -tgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~ 489 (718)
..++++|+.-.+.+|+.|++++|++|+. -+|.++|... ++...++-.- ++ .+.+-++.+ .+|.+++
T Consensus 244 ~~~~h~lin~~tikqm~qGaflvnta~gg-lvdekaLaqa-Lk~G~i~~aa-~~----~~~~~~l~d------~pn~ic~ 310 (435)
T KOG0067|consen 244 NEHNHELINDFTIKQMRQGAFLVNTARGG-LVDEKALAQA-LKSGRIRGAA-PR----SFKQGPLKD------APNLICT 310 (435)
T ss_pred CcccccccccccceeecccceEeeecccc-cCChHHHHhh-hccCceeccc-Cc----ccccccccC------CCCCCCC
Confidence 4578899999999999999999999985 5787777764 3333332110 00 122222222 2788888
Q ss_pred ccCCccccccc
Q psy7896 490 IHEAPTLLVHL 500 (718)
Q Consensus 490 ~h~~a~~~~Y~ 500 (718)
+|..+.....+
T Consensus 311 ~~ta~~~e~~~ 321 (435)
T KOG0067|consen 311 PHTAWYSEAAS 321 (435)
T ss_pred cccchhhHHHH
Confidence 88776654443
No 45
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.58 E-value=1.7e-07 Score=95.05 Aligned_cols=94 Identities=23% Similarity=0.306 Sum_probs=73.4
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-CceecCHHHHhc-cCcEEEEcCCCCCCcCH
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-GYEVTTMEEAAK-EGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-G~~v~~Leell~-~aDiIi~atgt~~lI~~ 419 (718)
.+.+++||+++|+|+|++|+.+|+.|..+|++|+++|+++.+..+.... |....+.++++. ++|+++.++.. ++|+.
T Consensus 22 ~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~-~~I~~ 100 (200)
T cd01075 22 GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALG-GVIND 100 (200)
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccc-cccCH
Confidence 4678999999999999999999999999999999999887543332222 556667777765 79999977553 69999
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.++.|+.. +++--+.+
T Consensus 101 ~~~~~l~~~-~v~~~AN~ 117 (200)
T cd01075 101 DTIPQLKAK-AIAGAANN 117 (200)
T ss_pred HHHHHcCCC-EEEECCcC
Confidence 999999865 44444443
No 46
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.54 E-value=2.4e-07 Score=98.78 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=71.6
Q ss_pred hhcccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||.|.+ |+.+|.+|...|+.|++++.. ..++.+.+++||||++++|..++|+.
T Consensus 151 ~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV~avG~~~~i~~ 217 (285)
T PRK14189 151 SIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVVAAVGKRNVLTA 217 (285)
T ss_pred HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEEEcCCCcCccCH
Confidence 4567899999999999998 999999999999999998532 23678899999999999999999997
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.+|+|+++||+|..
T Consensus 218 ---~~ik~gavVIDVGin 232 (285)
T PRK14189 218 ---DMVKPGATVIDVGMN 232 (285)
T ss_pred ---HHcCCCCEEEEcccc
Confidence 668999999999963
No 47
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.53 E-value=1.8e-07 Score=101.78 Aligned_cols=93 Identities=26% Similarity=0.359 Sum_probs=73.3
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-HHHhhcCceecCHHHHhccCcEEEEcCCC---CCCcCH
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-LQASMEGYEVTTMEEAAKEGGIFVTTTGC---KDIIRG 419 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-l~a~~~G~~v~~Leell~~aDiIi~atgt---~~lI~~ 419 (718)
..|+||+|||||+|++|+++|+.|+.+|++|+++++.+.+. ..+...|+.+.+.++++++||+|+++... ..+++.
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHH
Confidence 35789999999999999999999999999999887654332 23445688888999999999999997542 345555
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.+..|++|++|+ .++|
T Consensus 93 ~I~~~Lk~g~iL~-~a~G 109 (330)
T PRK05479 93 EIEPNLKEGAALA-FAHG 109 (330)
T ss_pred HHHhcCCCCCEEE-ECCC
Confidence 6677899999884 4444
No 48
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.50 E-value=3.8e-07 Score=100.71 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=73.0
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCcee-------cCHHHHhccCcEEEEcC---C--
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEV-------TTMEEAAKEGGIFVTTT---G-- 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v-------~~Leell~~aDiIi~at---g-- 412 (718)
+.+++|+|||+|.+|+.+++.|+++|++|+++|+++.+..... ..|..+ ..+.+.++++|+|++++ +
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 5778999999999999999999999999999998876533221 122211 24677889999999875 3
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
+..+|+++.++.||++++++|+|-
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEec
Confidence 356799999999999999999984
No 49
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.49 E-value=1.3e-06 Score=100.12 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=105.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHH-------HHHHHHHhcccccccchhhhh
Q psy7896 268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV-------AALHLEHLGVKLTKLTEDQAK 340 (718)
Q Consensus 268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i-------~~~~l~~lgv~~~~~~~~~~~ 340 (718)
.|+.+.-.=+-.-+....+.|.++|+.+.-+|.-|.-...-..+.+...-++ ++.+ ++++.+... ..
T Consensus 85 ~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~aa~--~~~~~~~g~----~t 158 (509)
T PRK09424 85 EGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIEAAH--EFGRFFTGQ----IT 158 (509)
T ss_pred CCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHHHHH--HhcccCCCc----ee
Confidence 4544444444445788889999999999888876631111122222221111 1111 011111100 00
Q ss_pred hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--CH---------------------
Q psy7896 341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--TM--------------------- 397 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--~L--------------------- 397 (718)
. .....|.+|.|+|.|.||...++.++.+|++|+++|.+|.+..++...|..+. +.
T Consensus 159 a-aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 159 A-AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred c-cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 0 11456999999999999999999999999999999999987666655665522 10
Q ss_pred -----HHHhccCcEEEEcCCCC-----CCcCHHHHhcCCCCeEEEEcCC
Q psy7896 398 -----EEAAKEGGIFVTTTGCK-----DIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 398 -----eell~~aDiIi~atgt~-----~lI~~e~l~~MK~gAiLIN~GR 436 (718)
.+.++.+|+++.+++.. .+|.++.++.||+|++++++|-
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 11125799999998753 3778999999999999999986
No 50
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.49 E-value=2.1e-07 Score=91.44 Aligned_cols=91 Identities=26% Similarity=0.321 Sum_probs=67.8
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc-cHHHHhhcCceecCHHHHhccCcEEEEcCCC---CCCcCHHH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI-NALQASMEGYEVTTMEEAAKEGGIFVTTTGC---KDIIRGEH 421 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~-~al~a~~~G~~v~~Leell~~aDiIi~atgt---~~lI~~e~ 421 (718)
|++|+|.|||||..|++.|..||.-|.+|++..+... ....|..+||++.+.+|+++.+|+|++.+.. ..+..++.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I 81 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEEI 81 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHHH
Confidence 6899999999999999999999999999999876555 4456778999999999999999999987542 33455566
Q ss_pred HhcCCCCeEEEEcCC
Q psy7896 422 FLQMRDDAIVCNIGH 436 (718)
Q Consensus 422 l~~MK~gAiLIN~GR 436 (718)
...||+|..|+-.--
T Consensus 82 ~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 82 APNLKPGATLVFAHG 96 (165)
T ss_dssp HHHS-TT-EEEESSS
T ss_pred HhhCCCCCEEEeCCc
Confidence 679999998885433
No 51
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.49 E-value=1.7e-06 Score=98.86 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=103.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHH-------HHHHHHHhcccccccchhhhh
Q psy7896 268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV-------AALHLEHLGVKLTKLTEDQAK 340 (718)
Q Consensus 268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i-------~~~~l~~lgv~~~~~~~~~~~ 340 (718)
.|+.+.-.=+-.-+....+.|.++++.+.-+|.-|.-...-..+.+...-++ ++.+ ++++.+... ..
T Consensus 84 ~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~--~lgr~~~g~----~t 157 (511)
T TIGR00561 84 AGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAH--EFGRFFTGQ----IT 157 (511)
T ss_pred CCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHH--HhhhhcCCc----ee
Confidence 3444433333334677788999999888888866621111112222211111 1111 111111100 00
Q ss_pred hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecC------------------------
Q psy7896 341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTT------------------------ 396 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~------------------------ 396 (718)
- ...+.+.+|.|+|+|.+|...++.++++|++|+++|.++.+...+...|..+..
T Consensus 158 a-ag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 158 A-AGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred c-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHH
Confidence 0 014567999999999999999999999999999999888765444444544311
Q ss_pred ----HHHHhccCcEEEEcC---C--CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 397 ----MEEAAKEGGIFVTTT---G--CKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 397 ----Leell~~aDiIi~at---g--t~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
+.+.++++|+++++. | .+.+++++.++.||+|+++||++-
T Consensus 237 ~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 345578899999875 4 445899999999999999999975
No 52
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.39 E-value=1e-06 Score=95.36 Aligned_cols=111 Identities=24% Similarity=0.352 Sum_probs=78.4
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecC-CccHHHHhhcCceecCHHHHhccCcEEEEcCCCC---CCcCHHH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID-PINALQASMEGYEVTTMEEAAKEGGIFVTTTGCK---DIIRGEH 421 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~d-p~~al~a~~~G~~v~~Leell~~aDiIi~atgt~---~lI~~e~ 421 (718)
|+||+|+|||+|++|+++|+.|+..|.+|+++++. +.....+...|+.+.+..+++++||+|+++.... ..+.++.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei 80 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEI 80 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHH
Confidence 57999999999999999999999999998876543 2222333356888888899999999999986543 2233445
Q ss_pred HhcCCCCeEEEEcCCCCccccHHHHhc---cccceeeecCCc
Q psy7896 422 FLQMRDDAIVCNIGHFDCEIQVSWLDK---NAVEKVNVKPQV 460 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd~Eid~~aL~~---~~l~~~~v~P~V 460 (718)
...|+++. ++.+++| +++..+.. ...++..+.||.
T Consensus 81 ~~~l~~g~-iVs~aaG---~~i~~~~~~~~~~~~VvrvmPn~ 118 (314)
T TIGR00465 81 QPLLKEGK-TLGFSHG---FNIHFVQIVPPKDVDVVMVAPKG 118 (314)
T ss_pred HhhCCCCc-EEEEeCC---ccHhhccccCCCCCcEEEECCCC
Confidence 56788886 6667776 23333332 234566677776
No 53
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=1.2e-06 Score=94.20 Aligned_cols=80 Identities=28% Similarity=0.294 Sum_probs=71.0
Q ss_pred hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|+|||.| .+|+.+|.+|...|+.|+++++.. .++.+++++||+|+++.|..+.+..
T Consensus 152 ~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------~~l~e~~~~ADIVIsavg~~~~v~~ 218 (301)
T PRK14194 152 DTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------TDAKALCRQADIVVAAVGRPRLIDA 218 (301)
T ss_pred HhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhcCCEEEEecCChhcccH
Confidence 34778999999999997 899999999999999999997543 1678899999999999999999997
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
.. +|+|+++|++|.
T Consensus 219 ~~---ik~GaiVIDvgi 232 (301)
T PRK14194 219 DW---LKPGAVVIDVGI 232 (301)
T ss_pred hh---ccCCcEEEEecc
Confidence 65 899999999995
No 54
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.37 E-value=1.3e-06 Score=93.44 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=71.5
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||.|. +|+.+|..|...|++|++++... .++.+.+++||+|+.++|..++|++
T Consensus 151 ~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVIsAvg~p~~i~~ 217 (286)
T PRK14175 151 HADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIVSAVGKPGLVTK 217 (286)
T ss_pred HcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEEECCCCCcccCH
Confidence 346689999999999999 99999999999999999997532 2578899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+. +|+|+++|++|..
T Consensus 218 ~~---vk~gavVIDvGi~ 232 (286)
T PRK14175 218 DV---VKEGAVIIDVGNT 232 (286)
T ss_pred HH---cCCCcEEEEcCCC
Confidence 64 6999999999974
No 55
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.36 E-value=3.5e-07 Score=102.35 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=74.2
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEE------EecCCccHHHHhhcCceecCHHHHhccCcEEEEcCC--CCC
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV------TEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTG--CKD 415 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv------~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atg--t~~ 415 (718)
..|+||||+|||||.||++-|..++..|.+|++ +|.+......+..+|+.+.+++|++++||+|+..+. .++
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~ 111 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHS 111 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHH
Confidence 468999999999999999888888888998884 332233333455679999999999999999998633 256
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg 437 (718)
.+..+.+..||+|+.|.=.--|
T Consensus 112 ~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 112 DVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred HHHHHHHhhCCCCCEEEecCCc
Confidence 6778889999999999865433
No 56
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.35 E-value=1e-06 Score=86.11 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=66.1
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----C-cCHHHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----I-IRGEHF 422 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----l-I~~e~l 422 (718)
++||+||+|++|+.+|++|...|.+|.+||++|.+.......|.. ..++.|+++.+|+|+++..+.. + ...+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999988765555555665 4589999999999998754311 1 111256
Q ss_pred hcCCCCeEEEEcCCCC
Q psy7896 423 LQMRDDAIVCNIGHFD 438 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd 438 (718)
+.+++|.++||++-.+
T Consensus 82 ~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTIS 97 (163)
T ss_dssp GGS-TTEEEEE-SS--
T ss_pred hccccceEEEecCCcc
Confidence 7899999999998854
No 57
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.28 E-value=3.3e-06 Score=83.16 Aligned_cols=81 Identities=28% Similarity=0.448 Sum_probs=61.2
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+. +|+.++.+|...|+.|++++... .++.+.+++||+|+.+.|..++|..
T Consensus 29 ~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~~~~ADIVVsa~G~~~~i~~ 95 (160)
T PF02882_consen 29 YYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEITRRADIVVSAVGKPNLIKA 95 (160)
T ss_dssp HTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHHHTTSSEEEE-SSSTT-B-G
T ss_pred hcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------CcccceeeeccEEeeeecccccccc
Confidence 356789999999999997 89999999999999999986532 3578889999999999999999987
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+ .+|+|+++||+|..
T Consensus 96 ~---~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 96 D---WIKPGAVVIDVGIN 110 (160)
T ss_dssp G---GS-TTEEEEE--CE
T ss_pred c---cccCCcEEEecCCc
Confidence 6 45999999999874
No 58
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.25 E-value=4.4e-06 Score=82.90 Aligned_cols=79 Identities=28% Similarity=0.427 Sum_probs=68.6
Q ss_pred cccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896 343 DIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421 (718)
Q Consensus 343 g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~ 421 (718)
..++.||+|.|||.|.+ |..+|+.|...|++|+++++.. .++.+.++++|+||++++..++|+.+.
T Consensus 39 ~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~~ii~~~~ 105 (168)
T cd01080 39 GIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKPGLVKGDM 105 (168)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCCceecHHH
Confidence 35799999999999985 9999999999999999987642 256788999999999999888999875
Q ss_pred HhcCCCCeEEEEcCCC
Q psy7896 422 FLQMRDDAIVCNIGHF 437 (718)
Q Consensus 422 l~~MK~gAiLIN~GRg 437 (718)
++++.++|++|.-
T Consensus 106 ---~~~~~viIDla~p 118 (168)
T cd01080 106 ---VKPGAVVIDVGIN 118 (168)
T ss_pred ---ccCCeEEEEccCC
Confidence 5889999999985
No 59
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=5e-06 Score=88.77 Aligned_cols=80 Identities=26% Similarity=0.341 Sum_probs=70.6
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||++.|||.|+ +|+.+|.+|...|+.|++++... .++.+.+++|||++.+.|..++|..
T Consensus 152 ~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvi~avG~p~~v~~ 218 (285)
T PRK10792 152 RYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHHVRNADLLVVAVGKPGFIPG 218 (285)
T ss_pred HcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHHHhhCCEEEEcCCCcccccH
Confidence 346789999999999999 89999999999999999996431 3688899999999999999999997
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+.+|+|+++|++|-
T Consensus 219 ---~~vk~gavVIDvGi 232 (285)
T PRK10792 219 ---EWIKPGAIVIDVGI 232 (285)
T ss_pred ---HHcCCCcEEEEccc
Confidence 45699999999993
No 60
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=3.7e-06 Score=89.76 Aligned_cols=80 Identities=26% Similarity=0.321 Sum_probs=70.6
Q ss_pred hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||.| .+|+.+|.+|...||.|++++... .++.+.+++||+++.++|..++++.
T Consensus 150 ~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~AvG~p~~i~~ 216 (285)
T PRK14191 150 HYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCVGVGKPDLIKA 216 (285)
T ss_pred HhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEEecCCCCcCCH
Confidence 34678999999999999 789999999999999999985422 2467889999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+.+ |+|+++|++|.
T Consensus 217 ~~v---k~GavVIDvGi 230 (285)
T PRK14191 217 SMV---KKGAVVVDIGI 230 (285)
T ss_pred HHc---CCCcEEEEeec
Confidence 766 99999999996
No 61
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=5e-06 Score=88.88 Aligned_cols=81 Identities=28% Similarity=0.414 Sum_probs=69.8
Q ss_pred hcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHH
Q psy7896 342 LDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGE 420 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e 420 (718)
.+.++.||+|.|||.|. +|+.+|..|...|++|+++++. ..++.+.++++|+||.++|..+.|+.+
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~-------------t~~L~~~~~~aDIvI~AtG~~~~v~~~ 219 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR-------------TQNLPELVKQADIIVGAVGKPELIKKD 219 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC-------------chhHHHHhccCCEEEEccCCCCcCCHH
Confidence 46789999999999998 9999999999999999999752 125677789999999999988888875
Q ss_pred HHhcCCCCeEEEEcCCCC
Q psy7896 421 HFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd 438 (718)
. +|+|++++++|...
T Consensus 220 ~---lk~gavViDvg~n~ 234 (283)
T PRK14192 220 W---IKQGAVVVDAGFHP 234 (283)
T ss_pred H---cCCCCEEEEEEEee
Confidence 4 79999999998653
No 62
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=4.5e-06 Score=89.15 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=70.9
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||.|+ +|+.+|.+|...||.|++++... .++.+..++||+++.+.|..++|+.
T Consensus 157 ~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvv~AvG~p~~i~~ 223 (287)
T PRK14176 157 EYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT-------------DDLKKYTLDADILVVATGVKHLIKA 223 (287)
T ss_pred HcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC-------------CCHHHHHhhCCEEEEccCCccccCH
Confidence 346789999999999999 89999999999999999996421 3578889999999999999999987
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+ .+|+|+++|++|.
T Consensus 224 ~---~vk~gavVIDvGi 237 (287)
T PRK14176 224 D---MVKEGAVIFDVGI 237 (287)
T ss_pred H---HcCCCcEEEEecc
Confidence 6 6799999999996
No 63
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.20 E-value=7.6e-06 Score=78.98 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=71.0
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|+|-+. +|+.+|.+|...|+.|++++.+. .++++.+++||+|+++++..++|+.
T Consensus 21 ~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvsAtg~~~~i~~ 87 (140)
T cd05212 21 KEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVVGSPKPEKVPT 87 (140)
T ss_pred HcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCCCCccCH
Confidence 347889999999999998 69999999999999999997532 2678889999999999998899997
Q ss_pred HHHhcCCCCeEEEEcCCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRgd 438 (718)
+. +|+|++++++|..-
T Consensus 88 ~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 88 EW---IKPGATVINCSPTK 103 (140)
T ss_pred HH---cCCCCEEEEcCCCc
Confidence 54 69999999998753
No 64
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.20 E-value=6.2e-06 Score=83.50 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=71.6
Q ss_pred cccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCcee---cC----HHHHhccCcEEEEcCCC
Q psy7896 343 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEV---TT----MEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 343 g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v---~~----Leell~~aDiIi~atgt 413 (718)
+.++.||+|.|||-++ +|+-+|.+|...||.|+++|++....... ....... .+ +.+.+++|||||.+.|.
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 5689999999999998 69999999999999999997654322110 0000111 13 67899999999999999
Q ss_pred CCC-cCHHHHhcCCCCeEEEEcCCC
Q psy7896 414 KDI-IRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~l-I~~e~l~~MK~gAiLIN~GRg 437 (718)
.++ |+.+. .|+|+++||+|-.
T Consensus 137 ~~~~i~~d~---ik~GavVIDVGi~ 158 (197)
T cd01079 137 PNYKVPTEL---LKDGAICINFASI 158 (197)
T ss_pred CCCccCHHH---cCCCcEEEEcCCC
Confidence 998 89765 4899999999975
No 65
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.14 E-value=7e-06 Score=80.76 Aligned_cols=93 Identities=23% Similarity=0.326 Sum_probs=67.2
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc---ee------------------------cC
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY---EV------------------------TT 396 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~---~v------------------------~~ 396 (718)
..+...+|.|+|.|++|+..++.|.++|++|++.|..+....+....+. .+ ..
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3567799999999999999999999999999999987754322221221 12 13
Q ss_pred HHHHhccCcEEEEc-----CCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 397 MEEAAKEGGIFVTT-----TGCKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 397 Leell~~aDiIi~a-----tgt~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
+.+.++.+|+|+.+ .....+|+++.++.||++.++++++-
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 56788899999874 34567999999999999999999864
No 66
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.14 E-value=7.9e-06 Score=87.28 Aligned_cols=81 Identities=30% Similarity=0.382 Sum_probs=70.5
Q ss_pred hhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|+|||. |.+|+.+|.+|...|+.|+++... ..++.+.+++||+|+++.|..+++..
T Consensus 151 ~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~avg~~~~v~~ 217 (284)
T PRK14179 151 EYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVVAIGRGHFVTK 217 (284)
T ss_pred HhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEEecCccccCCH
Confidence 3577899999999999 889999999999999999998321 12678899999999999999999997
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+. +|+|+++|++|-.
T Consensus 218 ~~---ik~GavVIDvgin 232 (284)
T PRK14179 218 EF---VKEGAVVIDVGMN 232 (284)
T ss_pred HH---ccCCcEEEEecce
Confidence 54 8999999999863
No 67
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.13 E-value=7.7e-06 Score=86.85 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=70.2
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCcC--HHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DIIR--GEH 421 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI~--~e~ 421 (718)
++|||||+|.+|..+|+.+...|.+|+++|+++.+.......|... .+.+++++++|+|+++..+. .++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5799999999999999999999999999998876544444455544 46889999999999875432 2232 224
Q ss_pred HhcCCCCeEEEEcCCCC
Q psy7896 422 FLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd 438 (718)
+..++++.+++|++...
T Consensus 83 ~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIA 99 (296)
T ss_pred hhcCCCCcEEEECCCCC
Confidence 56789999999999875
No 68
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=7.9e-06 Score=87.20 Aligned_cols=81 Identities=30% Similarity=0.385 Sum_probs=71.0
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+-+|.+|...|+.|++++... .++.+.+++|||++.+.|..++|+.
T Consensus 150 ~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~~~~i~~ 216 (284)
T PRK14170 150 STGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT-------------KDLPQVAKEADILVVATGLAKFVKK 216 (284)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCH
Confidence 457899999999999998 69999999999999999985421 3588899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.+ |+|+++|++|..
T Consensus 217 ~~v---k~GavVIDvGin 231 (284)
T PRK14170 217 DYI---KPGAIVIDVGMD 231 (284)
T ss_pred HHc---CCCCEEEEccCc
Confidence 654 899999999964
No 69
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=7.8e-06 Score=87.88 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=69.1
Q ss_pred hcccccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEe-cCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 342 LDIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTE-IDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 342 ~g~eL~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d-~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
.+.++.||+|+||| .|.+|+.+|++|..-|+.|++++ +.+ ++++++++||+|+++++..+.+..
T Consensus 152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~~~~ADIVIsavg~~~~v~~ 217 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAVCRRADILVAAVGRPEMVKG 217 (296)
T ss_pred hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhhcch
Confidence 46689999999999 89999999999999999999995 322 478889999999999999888886
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
.. +|+|+++|++|-.
T Consensus 218 ~~---lk~GavVIDvGin 232 (296)
T PRK14188 218 DW---IKPGATVIDVGIN 232 (296)
T ss_pred he---ecCCCEEEEcCCc
Confidence 54 8999999999874
No 70
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=9.3e-06 Score=86.74 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=71.6
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+. +|+.+|.+|...|+.|++++... .++.+.+++||+++.++|..++|+.
T Consensus 151 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-------------~~l~~~~~~ADIvI~AvG~p~~i~~ 217 (284)
T PRK14190 151 EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-------------KNLAELTKQADILIVAVGKPKLITA 217 (284)
T ss_pred HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCCcCCH
Confidence 456789999999999998 69999999999999999986421 3688899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.+ |+|+++|++|..
T Consensus 218 ~~i---k~gavVIDvGi~ 232 (284)
T PRK14190 218 DMV---KEGAVVIDVGVN 232 (284)
T ss_pred HHc---CCCCEEEEeecc
Confidence 776 899999999974
No 71
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.11 E-value=7.4e-06 Score=86.97 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=69.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCC----CCc-C-HHHH
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCK----DII-R-GEHF 422 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~----~lI-~-~e~l 422 (718)
+|||||+|.+|+.+|+.+...|.+|+++|+++.+.......|.. ..+.+++++++|+|+++..+. .++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999988654443444543 457889999999999975432 122 2 2245
Q ss_pred hcCCCCeEEEEcCCCC
Q psy7896 423 LQMRDDAIVCNIGHFD 438 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd 438 (718)
..++++.++||++...
T Consensus 81 ~~~~~g~iivd~st~~ 96 (291)
T TIGR01505 81 EGAKPGKTLVDMSSIS 96 (291)
T ss_pred hcCCCCCEEEECCCCC
Confidence 6789999999998864
No 72
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=1.3e-05 Score=85.53 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=70.8
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+.+|.+|...|+.|++++... .++.+.+++|||++.+.|..++|+.
T Consensus 149 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~p~~i~~ 215 (282)
T PRK14169 149 AYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQLTKEADILVVAVGVPHFIGA 215 (282)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence 457789999999999998 69999999999999999985422 3588899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+. .|+|+++|++|--
T Consensus 216 ~~---vk~GavVIDvGin 230 (282)
T PRK14169 216 DA---VKPGAVVIDVGIS 230 (282)
T ss_pred HH---cCCCcEEEEeecc
Confidence 65 5899999999963
No 73
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=1e-05 Score=86.17 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=70.8
Q ss_pred hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|+|.+ .+|+.+|.++..+|+.|+++..+. .++.+.+++||+++.+.|..++|++
T Consensus 145 ~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~Avgk~~lv~~ 211 (279)
T PRK14178 145 EYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVSAAGKAGFITP 211 (279)
T ss_pred HcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEECCCcccccCH
Confidence 34678999999999999 789999999999999999986532 3578899999999999998899998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+.+ |+|+++|++|-
T Consensus 212 ~~v---k~GavVIDVgi 225 (279)
T PRK14178 212 DMV---KPGATVIDVGI 225 (279)
T ss_pred HHc---CCCcEEEEeec
Confidence 875 99999999985
No 74
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=1.2e-05 Score=85.67 Aligned_cols=80 Identities=26% Similarity=0.497 Sum_probs=70.4
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+. +|+.+|.+|...|+.|++++... .++.+..++|||++.+.|..++|+.
T Consensus 150 ~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~~~~ADIvIsAvGkp~~i~~ 216 (282)
T PRK14166 150 AYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAGCVNLLRS 216 (282)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCCCcCccCH
Confidence 357789999999999998 69999999999999999986432 3588899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+. .|+|+++|++|-
T Consensus 217 ~~---vk~GavVIDvGi 230 (282)
T PRK14166 217 DM---VKEGVIVVDVGI 230 (282)
T ss_pred HH---cCCCCEEEEecc
Confidence 65 589999999994
No 75
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=1.3e-05 Score=85.51 Aligned_cols=80 Identities=26% Similarity=0.323 Sum_probs=69.7
Q ss_pred hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+ .+|+.+|.+|...||.|++++... .++.+.+++||+++.++|..++|+.
T Consensus 150 ~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-------------~~l~~~~~~ADIvV~AvGkp~~i~~ 216 (281)
T PRK14183 150 EYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT-------------KDLKAHTKKADIVIVGVGKPNLITE 216 (281)
T ss_pred HcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCcccccCH
Confidence 45678999999999999 589999999999999999985321 3578899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+.+ |+|+++|++|-
T Consensus 217 ~~v---k~gavvIDvGi 230 (281)
T PRK14183 217 DMV---KEGAIVIDIGI 230 (281)
T ss_pred HHc---CCCcEEEEeec
Confidence 654 89999999994
No 76
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=1.3e-05 Score=85.52 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=70.5
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+. +|+.+|.+|...||.|++++... .++.+..++|||++.+.|..++|+.
T Consensus 152 ~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~~~~ADIvIsAvGk~~~i~~ 218 (284)
T PRK14177 152 EYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSIVRQADIIVGAVGKPEFIKA 218 (284)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEeCCCcCccCH
Confidence 346789999999999998 69999999999999999996422 3678889999999999999999997
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+. .|+|+++|++|-
T Consensus 219 ~~---ik~gavVIDvGi 232 (284)
T PRK14177 219 DW---ISEGAVLLDAGY 232 (284)
T ss_pred HH---cCCCCEEEEecC
Confidence 65 489999999996
No 77
>PLN02712 arogenate dehydrogenase
Probab=98.06 E-value=8.7e-06 Score=96.34 Aligned_cols=104 Identities=11% Similarity=0.173 Sum_probs=77.2
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhc-cCcEEEEcCCC---CCC
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAK-EGGIFVTTTGC---KDI 416 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~-~aDiIi~atgt---~~l 416 (718)
.+.++.+++|||||+|.||+.+|+.++.+|.+|+++++++.. ..+...|.. ..++++++. .+|+|++++.. ..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 467889999999999999999999999999999999987542 223345654 347888876 58999998653 334
Q ss_pred cCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD 447 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~ 447 (718)
+..-....||+++++++++... ....+.+.
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~ 471 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVK-EFPRNLFL 471 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCcc-HHHHHHHH
Confidence 4433334699999999999875 33344444
No 78
>PLN02256 arogenate dehydrogenase
Probab=98.05 E-value=6.9e-05 Score=80.91 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=72.2
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHh-ccCcEEEEcCCCC---CCcCHH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAA-KEGGIFVTTTGCK---DIIRGE 420 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell-~~aDiIi~atgt~---~lI~~e 420 (718)
-.+++|+|||+|.+|..+|+.++..|.+|+++++++.. ..+...|+.. .+.++++ ..+|+|++++... .++..-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhh
Confidence 36789999999999999999999999999999887632 2233345543 4677876 4799999987643 233321
Q ss_pred HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
....+++++++++++.... ...+.+.+
T Consensus 113 ~~~~l~~~~iviDv~SvK~-~~~~~~~~ 139 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKE-FPKNLLLQ 139 (304)
T ss_pred hhhccCCCCEEEecCCchH-HHHHHHHH
Confidence 1445789999999999642 33445544
No 79
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.05 E-value=2.2e-05 Score=68.97 Aligned_cols=68 Identities=32% Similarity=0.453 Sum_probs=60.1
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhC-CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~f-Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~ 421 (718)
+..+.+++++|+|.|.+|+.+++.+... +.+|.++++ |+++.+++..+.+.+++
T Consensus 18 ~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~~~~~~~~~ 72 (86)
T cd05191 18 NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPAGVPVLEEA 72 (86)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCCCCCchHHH
Confidence 3568999999999999999999999998 568888854 99999999888999888
Q ss_pred HhcCCCCeEEEEcC
Q psy7896 422 FLQMRDDAIVCNIG 435 (718)
Q Consensus 422 l~~MK~gAiLIN~G 435 (718)
++.|+++.++++++
T Consensus 73 ~~~~~~~~~v~~~a 86 (86)
T cd05191 73 TAKINEGAVVIDLA 86 (86)
T ss_pred HHhcCCCCEEEecC
Confidence 99999999999863
No 80
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=1.6e-05 Score=85.45 Aligned_cols=81 Identities=28% Similarity=0.388 Sum_probs=70.7
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+.+|.+|...||.|++++... .++.+.+++||||+.+.|..++|+.
T Consensus 151 ~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~ 217 (297)
T PRK14186 151 SQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT-------------QDLASITREADILVAAAGRPNLIGA 217 (297)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence 456789999999999998 69999999999999999985321 3688899999999999999999997
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+. .|+|+++|++|-.
T Consensus 218 ~~---ik~gavVIDvGin 232 (297)
T PRK14186 218 EM---VKPGAVVVDVGIH 232 (297)
T ss_pred HH---cCCCCEEEEeccc
Confidence 65 4899999999964
No 81
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=1.4e-05 Score=85.52 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=70.1
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+.+|.+|...||.|++++.. ..++.+.+++|||++.+.|..++|+.
T Consensus 152 ~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~~~~ADIvV~AvGkp~~i~~ 218 (288)
T PRK14171 152 KYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSITSKADIVVAAIGSPLKLTA 218 (288)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCCCCccCH
Confidence 346789999999999998 6999999999999999998642 13688899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+. .|+|+++|++|-
T Consensus 219 ~~---vk~GavVIDvGi 232 (288)
T PRK14171 219 EY---FNPESIVIDVGI 232 (288)
T ss_pred HH---cCCCCEEEEeec
Confidence 65 489999999994
No 82
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=1.6e-05 Score=85.22 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=70.6
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+.+|.+|...||.|++++... .++.+.+++|||++.+.|..++|+.
T Consensus 153 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~~~~ADIvVsAvGkp~~i~~ 219 (294)
T PRK14187 153 TITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADYCSKADILVAAVGIPNFVKY 219 (294)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence 356789999999999998 69999999999999999986432 3578899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+.+ |+|+++|++|-
T Consensus 220 ~~i---k~gaiVIDVGi 233 (294)
T PRK14187 220 SWI---KKGAIVIDVGI 233 (294)
T ss_pred HHc---CCCCEEEEecc
Confidence 665 89999999985
No 83
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=1.7e-05 Score=84.41 Aligned_cols=81 Identities=31% Similarity=0.422 Sum_probs=70.7
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+. +|+.+|.+|...||.|++++... .++.+..++|||++.+.|..++|+.
T Consensus 151 ~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~ 217 (278)
T PRK14172 151 SLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT-------------KNLKEVCKKADILVVAIGRPKFIDE 217 (278)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCCCcCccCH
Confidence 346789999999999998 69999999999999999996421 3688899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+. .|+|+++|++|-.
T Consensus 218 ~~---ik~gavVIDvGin 232 (278)
T PRK14172 218 EY---VKEGAIVIDVGTS 232 (278)
T ss_pred HH---cCCCcEEEEeecc
Confidence 66 5899999999853
No 84
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=1.7e-05 Score=84.80 Aligned_cols=81 Identities=27% Similarity=0.357 Sum_probs=70.9
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+. +|+-+|.+|...|+.|++++... .++.+.+++|||++.+.|..++++.
T Consensus 148 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~ 214 (287)
T PRK14173 148 HYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAVTRRADVLVVAVGRPHLITP 214 (287)
T ss_pred HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCH
Confidence 457789999999999998 69999999999999999985422 3578899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.+ |+|+++|++|.-
T Consensus 215 ~~v---k~GavVIDVGin 229 (287)
T PRK14173 215 EMV---RPGAVVVDVGIN 229 (287)
T ss_pred HHc---CCCCEEEEccCc
Confidence 665 999999999974
No 85
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=98.03 E-value=1.6e-05 Score=85.50 Aligned_cols=81 Identities=26% Similarity=0.346 Sum_probs=70.8
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+-+|.+|...||.|++++.. ..++.+.+++||||+.+.|..++|+.
T Consensus 160 ~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv~AvGk~~~i~~ 226 (299)
T PLN02516 160 RSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVIAAAGQAMMIKG 226 (299)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCccCH
Confidence 347789999999999998 6999999999999999999642 13588899999999999999999997
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+. .|+|+++|++|-.
T Consensus 227 ~~---vk~gavVIDvGin 241 (299)
T PLN02516 227 DW---IKPGAAVIDVGTN 241 (299)
T ss_pred HH---cCCCCEEEEeecc
Confidence 65 4899999999963
No 86
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=1.8e-05 Score=84.50 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=70.1
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-+. +|+.+|.+|...||.|++++... .++.+.+++||+++.+.|..++|+.
T Consensus 151 ~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~~k~ADIvIsAvGkp~~i~~ 217 (282)
T PRK14180 151 EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGKPNFITA 217 (282)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHhhhcCEEEEccCCcCcCCH
Confidence 357789999999999998 69999999999999999985421 3678889999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+. .|+|+++|++|-
T Consensus 218 ~~---vk~gavVIDvGi 231 (282)
T PRK14180 218 DM---VKEGAVVIDVGI 231 (282)
T ss_pred HH---cCCCcEEEEecc
Confidence 55 589999999986
No 87
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.02 E-value=1.4e-05 Score=97.95 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=79.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh--hhhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASMEGYELDEEV---AALHLEHLGVKLTKL------- 334 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v--~AvaeGf~L~r~i---~~~~l~~lgv~~~~~------- 334 (718)
..||+|+|||.||.|+++|+.|++.|+.|+|+|..+.... .--...|++++++ +...+..+|+++...
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~di 383 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTA 383 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEE
Confidence 4699999999999999999999999999999997653221 1112246666554 344555667664211
Q ss_pred --ch---------------hhhh-----------------hh-------c---------ccccCcEEEEEecChhHHHHH
Q psy7896 335 --TE---------------DQAK-----------------YL-------D---------IMLAGKVAVVAGYGDVGKGCA 364 (718)
Q Consensus 335 --~~---------------~~~~-----------------~~-------g---------~eL~GktVGIIG~G~IG~~vA 364 (718)
.. ++.+ +. + ....||+|.|||.|++|..+|
T Consensus 384 t~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A 463 (944)
T PRK12779 384 TLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAA 463 (944)
T ss_pred eHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHH
Confidence 00 0000 00 0 023689999999999999999
Q ss_pred HHHHhCCCEEEEEec
Q psy7896 365 QSLRLFGSRVIVTEI 379 (718)
Q Consensus 365 ~~l~~fGa~Viv~d~ 379 (718)
+.+..+|++|++..+
T Consensus 464 ~ta~R~Ga~Vtlv~r 478 (944)
T PRK12779 464 RTAKRLGGNVTIVYR 478 (944)
T ss_pred HHHHHcCCEEEEEEe
Confidence 999999999988654
No 88
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.02 E-value=1.6e-05 Score=86.65 Aligned_cols=81 Identities=23% Similarity=0.376 Sum_probs=70.9
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+-+|.+|...||.|+++.... .++.+..++|||+|.+.|..++|+.
T Consensus 207 ~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~~~~ADIvIsAvGkp~~v~~ 273 (345)
T PLN02897 207 RSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQITRKADIVIAAAGIPNLVRG 273 (345)
T ss_pred HhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence 457899999999999998 69999999999999999985422 3578899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.+ |+|+++|++|--
T Consensus 274 d~v---k~GavVIDVGin 288 (345)
T PLN02897 274 SWL---KPGAVVIDVGTT 288 (345)
T ss_pred HHc---CCCCEEEEcccc
Confidence 654 899999999963
No 89
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.01 E-value=1.6e-05 Score=87.03 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=71.0
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+-+|.+|...||.|++++.. ..++.+.+++|||||.+.|..++|+.
T Consensus 224 ~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------T~nl~~~~r~ADIVIsAvGkp~~i~~ 290 (364)
T PLN02616 224 RYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITREADIIISAVGQPNMVRG 290 (364)
T ss_pred HhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCcCCH
Confidence 457889999999999998 6999999999999999998542 13688899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+. .|+|+++|++|--
T Consensus 291 d~---vK~GAvVIDVGIn 305 (364)
T PLN02616 291 SW---IKPGAVVIDVGIN 305 (364)
T ss_pred HH---cCCCCEEEecccc
Confidence 65 4899999999863
No 90
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=1.8e-05 Score=84.36 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=70.1
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.++.||+|.|||-++ +|+.+|.+|...|+.|++++... .++.+.+++|||++.+.|..++|+.
T Consensus 150 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~~~~ADIvI~AvGk~~~i~~ 216 (282)
T PRK14182 150 EARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGEVGRADILVAAIGKAELVKG 216 (282)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCH
Confidence 346789999999999998 69999999999999999985421 3578899999999999999999998
Q ss_pred HHHhcCCCCeEEEEcCC
Q psy7896 420 EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GR 436 (718)
+.+ |+|+++|++|-
T Consensus 217 ~~i---k~gaiVIDvGi 230 (282)
T PRK14182 217 AWV---KEGAVVIDVGM 230 (282)
T ss_pred HHc---CCCCEEEEeec
Confidence 654 89999999995
No 91
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=2.4e-05 Score=83.69 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=70.0
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~ 415 (718)
+.+.++.||+|.|||-+. +|+-+|.+|... ++.|++++... .++.+.+++|||++.+.|..+
T Consensus 146 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T-------------~~l~~~~~~ADIvV~AvG~p~ 212 (287)
T PRK14181 146 YYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS-------------ENLTEILKTADIIIAAIGVPL 212 (287)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcC
Confidence 457789999999999998 699999999888 89999985421 368889999999999999999
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg 437 (718)
+|+.+. .|+|+++||+|-.
T Consensus 213 ~i~~~~---ik~GavVIDvGin 231 (287)
T PRK14181 213 FIKEEM---IAEKAVIVDVGTS 231 (287)
T ss_pred ccCHHH---cCCCCEEEEeccc
Confidence 999865 4899999999963
No 92
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=2.5e-05 Score=83.44 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=70.6
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHh--CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCc
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRL--FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDII 417 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~--fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI 417 (718)
+.+.++.||++.|||-+. +|+-+|.+|.. .|+.|++++... .++.+.+++||+++.+.|..++|
T Consensus 151 ~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T-------------~~l~~~~k~ADIvV~AvGkp~~i 217 (284)
T PRK14193 151 RYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT-------------RDLAAHTRRADIIVAAAGVAHLV 217 (284)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC-------------CCHHHHHHhCCEEEEecCCcCcc
Confidence 457789999999999998 69999999987 799999986432 36888999999999999999999
Q ss_pred CHHHHhcCCCCeEEEEcCCC
Q psy7896 418 RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRg 437 (718)
+.+.+ |+|+++|++|..
T Consensus 218 ~~~~i---k~GavVIDvGin 234 (284)
T PRK14193 218 TADMV---KPGAAVLDVGVS 234 (284)
T ss_pred CHHHc---CCCCEEEEcccc
Confidence 98665 899999999964
No 93
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.95 E-value=2.9e-05 Score=83.19 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhcc---CcEEEEcCCCC----CCcCHHH
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKE---GGIFVTTTGCK----DIIRGEH 421 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~---aDiIi~atgt~----~lI~~e~ 421 (718)
+|||||+|++|+.+|+.+...|.+|+++|+++.+.......|... .+.++++++ +|+|+++..+. .++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 699999999999999999999999999999876544444456554 478888876 58999876553 233 345
Q ss_pred HhcCCCCeEEEEcCCCC
Q psy7896 422 FLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd 438 (718)
+..+++|.++||++...
T Consensus 81 ~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSR 97 (299)
T ss_pred hccCCCCCEEEECCCCC
Confidence 66789999999998864
No 94
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.95 E-value=2.6e-05 Score=83.49 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=70.2
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----CcC--HHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----IIR--GEH 421 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI~--~e~ 421 (718)
++|+|||+|++|..+|+.+...|.+|++||+++.+..+....|.. ..+..++++++|+|+++..+.. ++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 379999999999999999999999999999988765444444543 4578899999999998855432 222 123
Q ss_pred HhcCCCCeEEEEcCCCC
Q psy7896 422 FLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd 438 (718)
+..++++.++||++.++
T Consensus 82 ~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 82 CEGLSRDALVIDMSTIH 98 (296)
T ss_pred hhcCCCCCEEEECCCCC
Confidence 55689999999999975
No 95
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=3e-05 Score=82.94 Aligned_cols=80 Identities=25% Similarity=0.360 Sum_probs=70.6
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHh----CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRL----FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~----fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~ 415 (718)
+.+.++.||++.|||-++ +|+-+|.+|.. .||.|++++.+. .++.+.+++||+++.+.|.++
T Consensus 150 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~ADIVI~AvG~p~ 216 (286)
T PRK14184 150 RYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREADFLFVAIGRPR 216 (286)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCC
Confidence 357789999999999998 69999999988 899999986432 358889999999999999999
Q ss_pred CcCHHHHhcCCCCeEEEEcCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GR 436 (718)
+|+.+.+ |+|+++|++|-
T Consensus 217 li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 217 FVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred cCCHHHc---CCCCEEEEeee
Confidence 9998777 99999999985
No 96
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=3.5e-05 Score=82.64 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=69.0
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~ 415 (718)
+.+.++.||+|.|||-++ +|+.+|.+|... ++.|+++.... .++.+.+++|||++.+.|..+
T Consensus 150 ~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~~~~ADIvIsAvGkp~ 216 (293)
T PRK14185 150 RYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKECLEADIIIAALGQPE 216 (293)
T ss_pred HhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHHHhhCCEEEEccCCcC
Confidence 346789999999999998 699999999876 79999985432 368889999999999999999
Q ss_pred CcCHHHHhcCCCCeEEEEcCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GR 436 (718)
+|+.+. .|+|+++|++|-
T Consensus 217 ~i~~~~---vk~gavVIDvGi 234 (293)
T PRK14185 217 FVKADM---VKEGAVVIDVGT 234 (293)
T ss_pred ccCHHH---cCCCCEEEEecC
Confidence 999754 599999999996
No 97
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.92 E-value=2e-05 Score=84.41 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=71.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--HHHhhcCcee-------cCHHHHhccCcEEEEc---CC-
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYEV-------TTMEEAAKEGGIFVTT---TG- 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l~a~~~G~~v-------~~Leell~~aDiIi~a---tg- 412 (718)
....+|.|||+|-+|...|+.+.++|++|++.|.++.+. +... .+.++ ..+++.++++|++|.+ +|
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~-f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL-FGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh-hCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 456789999999999999999999999999999876542 2222 23332 2478889999999964 33
Q ss_pred -CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 413 -CKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 413 -t~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
.+.++.++++++||+|+++|+++-
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEEE
Confidence 567999999999999999999864
No 98
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=3.5e-05 Score=82.83 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=69.2
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~ 415 (718)
+.+.++.||+|.|||-++ +|+.+|.+|... ++.|+++.... .++.+.+++|||||.++|..+
T Consensus 154 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T-------------~~l~~~~~~ADIvVsAvGkp~ 220 (297)
T PRK14168 154 RSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS-------------KNLARHCQRADILIVAAGVPN 220 (297)
T ss_pred HhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC-------------cCHHHHHhhCCEEEEecCCcC
Confidence 357889999999999998 699999999877 79999985421 357888999999999999999
Q ss_pred CcCHHHHhcCCCCeEEEEcCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GR 436 (718)
+|+.+. .|+|+++||+|.
T Consensus 221 ~i~~~~---ik~gavVIDvGi 238 (297)
T PRK14168 221 LVKPEW---IKPGATVIDVGV 238 (297)
T ss_pred ccCHHH---cCCCCEEEecCC
Confidence 999865 489999999985
No 99
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=3.7e-05 Score=82.65 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=68.8
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~ 415 (718)
+.+.++.||+|.|||-++ +|+.+|.+|... ++.|++++... .++.+..++|||++.+.|..+
T Consensus 150 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~~l~~~~~~ADIvIsAvGkp~ 216 (297)
T PRK14167 150 AAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT-------------DDLAAKTRRADIVVAAAGVPE 216 (297)
T ss_pred HhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcC
Confidence 446789999999999998 699999999766 89999985422 357889999999999999999
Q ss_pred CcCHHHHhcCCCCeEEEEcCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GR 436 (718)
+|+.+. .|+|+++|++|-
T Consensus 217 ~i~~~~---ik~gaiVIDvGi 234 (297)
T PRK14167 217 LIDGSM---LSEGATVIDVGI 234 (297)
T ss_pred ccCHHH---cCCCCEEEEccc
Confidence 999854 589999999995
No 100
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.92 E-value=8.5e-05 Score=78.90 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=68.7
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC----EEEEEecCCccHHHHh-hcCcee-cCHHHHhccCcEEEEcCCCCCCcC--HH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS----RVIVTEIDPINALQAS-MEGYEV-TTMEEAAKEGGIFVTTTGCKDIIR--GE 420 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa----~Viv~d~dp~~al~a~-~~G~~v-~~Leell~~aDiIi~atgt~~lI~--~e 420 (718)
++|||||+|++|.++++.+..-|. +|+++++++.+..... ..|... .+..+++++||+|+++.....+.+ .+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~ 82 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQ 82 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHH
Confidence 579999999999999999987764 6999988775543332 246544 467788999999999866433321 12
Q ss_pred HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
.-..++++.++|.+.-| ++++.|.+
T Consensus 83 l~~~~~~~~lvISi~AG---i~i~~l~~ 107 (272)
T PRK12491 83 IKDQIKNDVIVVTIAAG---KSIKSTEN 107 (272)
T ss_pred HHHhhcCCcEEEEeCCC---CcHHHHHH
Confidence 22345788899998876 55666655
No 101
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.91 E-value=2.9e-05 Score=87.17 Aligned_cols=98 Identities=23% Similarity=0.311 Sum_probs=73.5
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHH-HhhcCcee---cCHHHHhccCcEEEEcCCC-CCCcC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQ-ASMEGYEV---TTMEEAAKEGGIFVTTTGC-KDIIR 418 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~-a~~~G~~v---~~Leell~~aDiIi~atgt-~~lI~ 418 (718)
.+.|++|+|||+|.||+.+++.|+..| .+|+++++++.++.. +...|... .++.+++..+|+|+++|+. ..+++
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~ 256 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVS 256 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEc
Confidence 478999999999999999999999999 689999988765432 22223222 3566778899999999864 55789
Q ss_pred HHHHhcCC----CCeEEEEcCCCCccccH
Q psy7896 419 GEHFLQMR----DDAIVCNIGHFDCEIQV 443 (718)
Q Consensus 419 ~e~l~~MK----~gAiLIN~GRgd~Eid~ 443 (718)
.+.++.+. ...++++.+.. .++|.
T Consensus 257 ~e~l~~~~~~~~~~~~viDla~P-rdid~ 284 (417)
T TIGR01035 257 KEDVERALRERTRPLFIIDIAVP-RDVDP 284 (417)
T ss_pred HHHHHHHHhcCCCCeEEEEeCCC-CCCCh
Confidence 88887652 34699999853 34554
No 102
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.89 E-value=2.6e-05 Score=74.21 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=70.4
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHH--hh--cCceec---CHHHHhccCcEEEEcCCC-CC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQA--SM--EGYEVT---TMEEAAKEGGIFVTTTGC-KD 415 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a--~~--~G~~v~---~Leell~~aDiIi~atgt-~~ 415 (718)
+++|+++.|||.|.+|+.++..|...|++ |+++++++.++.+. .. ..+.+. ++.+.+.++|+|+.+|+. ..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 78999999999999999999999999996 99999887654321 11 123333 455668899999998764 34
Q ss_pred CcCHHHHhcCCCCe-EEEEcCCC
Q psy7896 416 IIRGEHFLQMRDDA-IVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~gA-iLIN~GRg 437 (718)
.++++.++..++.. ++++.|.-
T Consensus 89 ~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 89 IITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp SSTHHHHTTTCHHCSEEEES-SS
T ss_pred ccCHHHHHHHHhhhhceeccccC
Confidence 78988888776655 89998864
No 103
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.88 E-value=4.7e-05 Score=72.61 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=68.8
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHh-hcC-----ceecCHHHHhccCcEEEEcCCCCC
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQAS-MEG-----YEVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~-~~G-----~~v~~Leell~~aDiIi~atgt~~ 415 (718)
+.++.+++++|+|+|.+|+.+++.+...| .+|.++++++.+..+.. ..+ ....+.+++++++|+|+++++...
T Consensus 14 ~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 14 GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGM 93 (155)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCC
Confidence 44578999999999999999999999886 78999998875433211 112 234577788899999999865532
Q ss_pred C-cCHHH--HhcCCCCeEEEEcCCCC
Q psy7896 416 I-IRGEH--FLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 416 l-I~~e~--l~~MK~gAiLIN~GRgd 438 (718)
. +.... ...++++.++++++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~D~~~~~ 119 (155)
T cd01065 94 KPGDELPLPPSLLKPGGVVYDVVYNP 119 (155)
T ss_pred CCCCCCCCCHHHcCCCCEEEEcCcCC
Confidence 1 11111 13468999999998754
No 104
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.86 E-value=3.5e-05 Score=82.52 Aligned_cols=90 Identities=22% Similarity=0.254 Sum_probs=71.0
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-HhhcCcee-cCHHHHhccCcEEEEcCCC-C---CCcC--HH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-ASMEGYEV-TTMEEAAKEGGIFVTTTGC-K---DIIR--GE 420 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-a~~~G~~v-~~Leell~~aDiIi~atgt-~---~lI~--~e 420 (718)
.+|++||+|..|..+|++|..-|..|.+||++|.++.+ ....|... .+..|+++.+|+|+++-.+ . .++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999987433 33446554 4678999999999987332 1 1222 34
Q ss_pred HHhcCCCCeEEEEcCCCC
Q psy7896 421 HFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd 438 (718)
.++.||+|.++|+++-.+
T Consensus 81 ~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 81 LLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred hhhcCCCCCEEEECCCCC
Confidence 578899999999998854
No 105
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.85 E-value=5.4e-05 Score=81.40 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=69.8
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHh----CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRL----FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~----fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~ 415 (718)
+.+.++.||+|.|||-+. +|+.+|.+|.. .|+.|+++.... .++.+++++||++|.+.|..+
T Consensus 152 ~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~ADIvI~Avg~~~ 218 (295)
T PRK14174 152 RYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQADILIAAIGKAR 218 (295)
T ss_pred HhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCccC
Confidence 346789999999999998 69999999976 689999986432 257889999999999999989
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg 437 (718)
+|+.+.+ |+|+++|++|-.
T Consensus 219 li~~~~v---k~GavVIDVgi~ 237 (295)
T PRK14174 219 FITADMV---KPGAVVIDVGIN 237 (295)
T ss_pred ccCHHHc---CCCCEEEEeecc
Confidence 9998887 999999999853
No 106
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.83 E-value=4.8e-05 Score=80.88 Aligned_cols=81 Identities=27% Similarity=0.338 Sum_probs=70.6
Q ss_pred hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
+.+.+++||++.|||-++ +|+-++.+|...++.|++++... .++.+..++|||++.+.|-.++|++
T Consensus 149 ~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~~k~ADIvv~AvG~p~~i~~ 215 (283)
T COG0190 149 EYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASITKNADIVVVAVGKPHFIKA 215 (283)
T ss_pred HhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHHhhhCCEEEEecCCcccccc
Confidence 456789999999999999 59999999999999999996532 3678889999999999999999996
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+ ..|+|+++|++|--
T Consensus 216 d---~vk~gavVIDVGin 230 (283)
T COG0190 216 D---MVKPGAVVIDVGIN 230 (283)
T ss_pred c---cccCCCEEEecCCc
Confidence 4 45999999999863
No 107
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.81 E-value=7.2e-05 Score=80.14 Aligned_cols=89 Identities=19% Similarity=0.145 Sum_probs=69.1
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhcc---CcEEEEcCCCC----CCcCHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKE---GGIFVTTTGCK----DIIRGE 420 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~---aDiIi~atgt~----~lI~~e 420 (718)
++|||||+|.+|+.+|+.|...|.+|.++|+++.+.......|..+. +.+++++. +|+|+++..+. .++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 37999999999999999999999999999998865544444566554 68888875 68888875443 233 34
Q ss_pred HHhcCCCCeEEEEcCCCC
Q psy7896 421 HFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd 438 (718)
....++++.++||++...
T Consensus 80 l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred HHhhCCCCCEEEeCCCCC
Confidence 567789999999998864
No 108
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.79 E-value=5.6e-05 Score=84.98 Aligned_cols=93 Identities=25% Similarity=0.290 Sum_probs=71.6
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-HhhcCceec---CHHHHhccCcEEEEcCCCC-CCcC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-ASMEGYEVT---TMEEAAKEGGIFVTTTGCK-DIIR 418 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a~~~G~~v~---~Leell~~aDiIi~atgt~-~lI~ 418 (718)
.+.|++|+|||.|.||+.+++.++..|+ +|+++++++.++.. +...|..+. ++.+.+.++|+|+++|+.. .+++
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIG 258 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence 4789999999999999999999999998 79999988765432 222233333 3556788999999998754 5788
Q ss_pred HHHHhcC-----CCCeEEEEcCCC
Q psy7896 419 GEHFLQM-----RDDAIVCNIGHF 437 (718)
Q Consensus 419 ~e~l~~M-----K~gAiLIN~GRg 437 (718)
.+.++.+ +.+.++++.+..
T Consensus 259 ~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 259 KGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred HHHHHHHHhhccCCCeEEEEeCCC
Confidence 8888765 356899999863
No 109
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.78 E-value=5.3e-05 Score=80.98 Aligned_cols=90 Identities=28% Similarity=0.357 Sum_probs=71.3
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEec-CCccHHHHhhcCceecCHHHHhccCcEEEEcCCC---CCCcCHH
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYEVTTMEEAAKEGGIFVTTTGC---KDIIRGE 420 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~-dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt---~~lI~~e 420 (718)
-|+||+|+|||||.-|.+=|..||.-|.+|++--+ .......|..+||.+.+.+|+++.+|+|...+.. ..+..++
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~ 94 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKE 94 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHH
Confidence 47999999999999999999999999999888433 2233455778999999999999999999876442 2344445
Q ss_pred HHhcCCCCeEEEEc
Q psy7896 421 HFLQMRDDAIVCNI 434 (718)
Q Consensus 421 ~l~~MK~gAiLIN~ 434 (718)
--..||.|+.|.-.
T Consensus 95 I~p~Lk~G~aL~Fa 108 (338)
T COG0059 95 IAPNLKEGAALGFA 108 (338)
T ss_pred hhhhhcCCceEEec
Confidence 56789999966643
No 110
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.78 E-value=4.4e-05 Score=80.90 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=66.0
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--ecCHHHHhccCcEEEEcCCCCCCc--CHHHHhc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--VTTMEEAAKEGGIFVTTTGCKDII--RGEHFLQ 424 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--v~~Leell~~aDiIi~atgt~~lI--~~e~l~~ 424 (718)
++|+|||+|.||..+|..++..|.+|+++|+++.....+...|.. ..+..+.++++|+|++++....+. -++....
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~ 80 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA 80 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999887654444444431 222235688999999987643221 1334456
Q ss_pred CCCCeEEEEcCCCC
Q psy7896 425 MRDDAIVCNIGHFD 438 (718)
Q Consensus 425 MK~gAiLIN~GRgd 438 (718)
+++++++.++|...
T Consensus 81 l~~~~ii~d~~Svk 94 (279)
T PRK07417 81 LPPEAIVTDVGSVK 94 (279)
T ss_pred CCCCcEEEeCcchH
Confidence 78999999998864
No 111
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.74 E-value=0.00031 Score=74.91 Aligned_cols=89 Identities=24% Similarity=0.249 Sum_probs=62.7
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-----------HhhcC-------------ceecCHHHHhccC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-----------ASMEG-------------YEVTTMEEAAKEG 404 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-----------a~~~G-------------~~v~~Leell~~a 404 (718)
++|+|||.|.+|..+|+.+...|.+|+++|+++..... ....| ..+.+-.+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999988754211 11111 2233333568999
Q ss_pred cEEEEcCC-C---CCCcCHHHHhcCCCCeEEE-EcCCC
Q psy7896 405 GIFVTTTG-C---KDIIRGEHFLQMRDDAIVC-NIGHF 437 (718)
Q Consensus 405 DiIi~atg-t---~~lI~~e~l~~MK~gAiLI-N~GRg 437 (718)
|+|+.+.. . +..+-.+..+.++++++|+ |++..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 99999743 2 2233334445689999886 88774
No 112
>PLN02712 arogenate dehydrogenase
Probab=97.70 E-value=8.2e-05 Score=88.23 Aligned_cols=91 Identities=11% Similarity=0.222 Sum_probs=67.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHh-ccCcEEEEcCCC---CCCcCHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAA-KEGGIFVTTTGC---KDIIRGEH 421 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell-~~aDiIi~atgt---~~lI~~e~ 421 (718)
+.++|||||+|+||+.+|+.++..|.+|+++++++... .+...|.. ..++++++ +++|+|++++.. ..++..-.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~ 129 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-AARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP 129 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence 45789999999999999999999999999998764332 33344554 34678865 569999998653 33344322
Q ss_pred HhcCCCCeEEEEcCCCC
Q psy7896 422 FLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd 438 (718)
+..|+++++++|++...
T Consensus 130 ~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 130 LQRLKRNTLFVDVLSVK 146 (667)
T ss_pred hhcCCCCeEEEECCCCc
Confidence 35689999999998754
No 113
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.69 E-value=0.0001 Score=79.10 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=67.8
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCc---eecCHHHHhccCcEEEEcCCCCCC--cCHH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGY---EVTTMEEAAKEGGIFVTTTGCKDI--IRGE 420 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~---~v~~Leell~~aDiIi~atgt~~l--I~~e 420 (718)
-++|+|||+|.||..+|+.++..|. +|+++++++.....+...|. ...+.+++++++|+|++++..... +-.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~ 85 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE 85 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence 4689999999999999999998884 89999988764433434453 234678889999999998765322 2223
Q ss_pred HHhcCCCCeEEEEcCCCC
Q psy7896 421 HFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd 438 (718)
....++++.+++++|...
T Consensus 86 l~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 86 IAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred HHhhCCCCCEEEeCccch
Confidence 345689999999998754
No 114
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.68 E-value=9.1e-05 Score=65.41 Aligned_cols=85 Identities=24% Similarity=0.343 Sum_probs=59.6
Q ss_pred EEEEEecChhHHHHHHHHHhCC---CEEEE-EecCCccHHHH-hhcCceec--CHHHHhccCcEEEEcCCCCCC--cCHH
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFG---SRVIV-TEIDPINALQA-SMEGYEVT--TMEEAAKEGGIFVTTTGCKDI--IRGE 420 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fG---a~Viv-~d~dp~~al~a-~~~G~~v~--~Leell~~aDiIi~atgt~~l--I~~e 420 (718)
||||||+|++|.++++.+...| .+|++ ++++|.+..+. ...+..+. +..|+++++|+|+++.....+ +-.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHH
Confidence 6899999999999999999999 89995 48888765433 23444433 689999999999998654333 1111
Q ss_pred HHhcCCCCeEEEEcC
Q psy7896 421 HFLQMRDDAIVCNIG 435 (718)
Q Consensus 421 ~l~~MK~gAiLIN~G 435 (718)
+....++.++|.+.
T Consensus 81 -i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 81 -IPHLLKGKLVISIA 94 (96)
T ss_dssp -HHHHHTTSEEEEES
T ss_pred -HhhccCCCEEEEeC
Confidence 14455677777654
No 115
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.68 E-value=0.00011 Score=76.33 Aligned_cols=84 Identities=26% Similarity=0.347 Sum_probs=60.8
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEec----------CCccHHHHh-hcC-------ceecCHHHHh-c
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEI----------DPINALQAS-MEG-------YEVTTMEEAA-K 402 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~----------dp~~al~a~-~~G-------~~v~~Leell-~ 402 (718)
+.++.|++|.|+|+|+||+.+|+.|..+|++|+ +.|. |+....... ..| ....+.++++ .
T Consensus 26 ~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~ 105 (227)
T cd01076 26 GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL 105 (227)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee
Confidence 467899999999999999999999999999999 6665 332222111 112 1223445554 3
Q ss_pred cCcEEEEcCCCCCCcCHHHHhcCCC
Q psy7896 403 EGGIFVTTTGCKDIIRGEHFLQMRD 427 (718)
Q Consensus 403 ~aDiIi~atgt~~lI~~e~l~~MK~ 427 (718)
++||++.|+.+ +.|+.+...+++-
T Consensus 106 ~~Dvlip~a~~-~~i~~~~~~~l~a 129 (227)
T cd01076 106 DCDILIPAALE-NQITADNADRIKA 129 (227)
T ss_pred cccEEEecCcc-CccCHHHHhhcee
Confidence 78999998744 7899999999983
No 116
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00043 Score=73.53 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=76.0
Q ss_pred cEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHH-HHhhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINAL-QASMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHF 422 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al-~a~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l 422 (718)
++||+||+|++|++++.-+..-| .+|+++++++.+.. .+...|.. ..+-.++..++|+|+++.....+ .+.+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~--~~vl 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDL--EEVL 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhH--HHHH
Confidence 57999999999999999999888 58999988776543 23334444 45667889999999998654332 3566
Q ss_pred hcCC---CCeEEEEcCCCCccccHHHHhcc--ccceeeecCCc
Q psy7896 423 LQMR---DDAIVCNIGHFDCEIQVSWLDKN--AVEKVNVKPQV 460 (718)
Q Consensus 423 ~~MK---~gAiLIN~GRgd~Eid~~aL~~~--~l~~~~v~P~V 460 (718)
+.+| ++.++|.+.-| +..+.|+.. ......+.||.
T Consensus 80 ~~l~~~~~~~lvISiaAG---v~~~~l~~~l~~~~vvR~MPNt 119 (266)
T COG0345 80 SKLKPLTKDKLVISIAAG---VSIETLERLLGGLRVVRVMPNT 119 (266)
T ss_pred HHhhcccCCCEEEEEeCC---CCHHHHHHHcCCCceEEeCCCh
Confidence 7776 68888888776 445555542 23455555665
No 117
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.65 E-value=0.00074 Score=76.47 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=67.4
Q ss_pred cEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhhcCcee-cCHHHHhccCcEEEEcCCCCC---CcCHHHH
Q psy7896 349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASMEGYEV-TTMEEAAKEGGIFVTTTGCKD---IIRGEHF 422 (718)
Q Consensus 349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~~G~~v-~~Leell~~aDiIi~atgt~~---lI~~e~l 422 (718)
++|+||| +|.+|..+|+.++..|.+|+++++++.... .+...|..+ .+..++++++|+|++++.... ++ .+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl-~~l~ 79 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI-KEVA 79 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH-HHHH
Confidence 4799998 899999999999999999999998875432 233345543 367888999999999865432 22 2334
Q ss_pred hcCCCCeEEEEcCCCC
Q psy7896 423 LQMRDDAIVCNIGHFD 438 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd 438 (718)
..+++++++++++...
T Consensus 80 ~~l~~~~iViDvsSvK 95 (437)
T PRK08655 80 PHVKEGSLLMDVTSVK 95 (437)
T ss_pred hhCCCCCEEEEccccc
Confidence 5689999999999753
No 118
>PRK12831 putative oxidoreductase; Provisional
Probab=97.63 E-value=0.00016 Score=82.30 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=33.7
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp 302 (718)
...+++++|||.|+.|+.+|..|+++|+.|+++|..+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 3578999999999999999999999999999999644
No 119
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=0.00016 Score=78.12 Aligned_cols=88 Identities=20% Similarity=0.113 Sum_probs=68.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--------C------c-eecCHHHHhccCcEEEEcCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME--------G------Y-EVTTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--------G------~-~v~~Leell~~aDiIi~atg 412 (718)
.++|+|||.|.+|..+|..|...|.+|+++++++......... | . ...+++++++.+|+|+++..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4689999999999999999999999999999876532211111 3 2 23478888999999999876
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
+..+ .+.++.++++.+++++..|
T Consensus 84 ~~~~--~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 84 SKAL--RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred hHHH--HHHHHhcCcCCEEEEEeec
Confidence 6543 6677889999999998775
No 120
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.62 E-value=0.00016 Score=77.40 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=66.0
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----Cc-CH-HHH
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----II-RG-EHF 422 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI-~~-e~l 422 (718)
+|||||.|++|..+|+.+...|.+|++++++|. .......|.. ..+..++++++|+|+++..+.. ++ .. ..+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 699999999999999999999999999998874 2222334553 4578889999999998754421 22 11 135
Q ss_pred hcCCCCeEEEEcCCCC
Q psy7896 423 LQMRDDAIVCNIGHFD 438 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd 438 (718)
+.+++|.++|+++-.+
T Consensus 81 ~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 81 KASLKGKTIVDMSSIS 96 (292)
T ss_pred ccCCCCCEEEECCCCC
Confidence 5678999999998754
No 121
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.62 E-value=0.00015 Score=78.06 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=61.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcC-HHHHh--
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIR-GEHFL-- 423 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~-~e~l~-- 423 (718)
.+++|+|||.|++|+.+|+.+...|.+|.++++++. .+++++++++|+|+++.....+-. -+.+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHh
Confidence 467999999999999999999999999999987653 357788899999998865432211 02343
Q ss_pred cCCCCeEEEEcCCC
Q psy7896 424 QMRDDAIVCNIGHF 437 (718)
Q Consensus 424 ~MK~gAiLIN~GRg 437 (718)
.+++++++++++.+
T Consensus 71 ~~~~~~ivi~~s~g 84 (308)
T PRK14619 71 NLPPETIIVTATKG 84 (308)
T ss_pred cCCCCcEEEEeCCc
Confidence 47889999998764
No 122
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.60 E-value=0.00013 Score=80.20 Aligned_cols=90 Identities=20% Similarity=0.370 Sum_probs=65.6
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-----ecCHHHHhccCcEEEEcCCCCCCcCH-HHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-----VTTMEEAAKEGGIFVTTTGCKDIIRG-EHF 422 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-----v~~Leell~~aDiIi~atgt~~lI~~-e~l 422 (718)
++|+|||+|.||..+|+.++..|.+|.+++.++.........+.. ..+++++++++|+|++++....+..- +.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l 80 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAEL 80 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 579999999999999999999999999998887653222222222 24577889999999998664322110 233
Q ss_pred h--cCCCCeEEEEcCCCC
Q psy7896 423 L--QMRDDAIVCNIGHFD 438 (718)
Q Consensus 423 ~--~MK~gAiLIN~GRgd 438 (718)
. .+++++++.++|...
T Consensus 81 ~~~~l~~~~ivtDv~SvK 98 (359)
T PRK06545 81 ADLELKPGVIVTDVGSVK 98 (359)
T ss_pred hhcCCCCCcEEEeCcccc
Confidence 3 378899999998865
No 123
>PLN00203 glutamyl-tRNA reductase
Probab=97.56 E-value=0.00022 Score=82.27 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=71.3
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh--hcCc--ee---cCHHHHhccCcEEEEcCCC-CC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS--MEGY--EV---TTMEEAAKEGGIFVTTTGC-KD 415 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~--~~G~--~v---~~Leell~~aDiIi~atgt-~~ 415 (718)
++.+++|+|||.|.+|+.+++.|...|+ +|+++++++.+..... ..+. .+ .++.+++.++|+|+++|+. ..
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 5889999999999999999999999997 7999998876543222 1132 22 2456778999999998764 45
Q ss_pred CcCHHHHhcCCC-------CeEEEEcCCC
Q psy7896 416 IIRGEHFLQMRD-------DAIVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~-------gAiLIN~GRg 437 (718)
+|.++.++.|++ .-++|+.+-.
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 899999988743 2489998875
No 124
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.53 E-value=0.0003 Score=79.55 Aligned_cols=116 Identities=25% Similarity=0.273 Sum_probs=72.1
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc------
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL------ 334 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~------ 334 (718)
...+++++|||.|+.|+.+|..|+.+|..|+++|..+...-. -....+.+..++ ....+...++++...
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~ 209 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKT 209 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCc
Confidence 346899999999999999999999999999999975432100 000111222111 111222223222100
Q ss_pred --------------------chhhh--------------hhhc---------------ccccCcEEEEEecChhHHHHHH
Q psy7896 335 --------------------TEDQA--------------KYLD---------------IMLAGKVAVVAGYGDVGKGCAQ 365 (718)
Q Consensus 335 --------------------~~~~~--------------~~~g---------------~eL~GktVGIIG~G~IG~~vA~ 365 (718)
.+... .+.. ....||+|.|||.|++|..+|+
T Consensus 210 v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~ 289 (449)
T TIGR01316 210 ATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSAR 289 (449)
T ss_pred CCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHH
Confidence 00000 0000 0136799999999999999999
Q ss_pred HHHhCCCEEEEEecCC
Q psy7896 366 SLRLFGSRVIVTEIDP 381 (718)
Q Consensus 366 ~l~~fGa~Viv~d~dp 381 (718)
.+..+|++|+++.+.+
T Consensus 290 ~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 290 TALRLGAEVHCLYRRT 305 (449)
T ss_pred HHHHcCCEEEEEeecC
Confidence 9999999999876543
No 125
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.51 E-value=0.00075 Score=69.97 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=73.4
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCE---EEEEecCC----ccH-------H-HHhhcC-cee-cCHHHHhccCc
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSR---VIVTEIDP----INA-------L-QASMEG-YEV-TTMEEAAKEGG 405 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~---Viv~d~dp----~~a-------l-~a~~~G-~~v-~~Leell~~aD 405 (718)
+..++++++.|+|.|..|+.+|..+...|++ |.++|+++ .+. . -+...+ ... .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 5678999999999999999999999999985 99999883 221 0 011111 111 36778889999
Q ss_pred EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
++|.+|+ .++++.+.++.|+++.++.....-
T Consensus 100 vlIgaT~-~G~~~~~~l~~m~~~~ivf~lsnP 130 (226)
T cd05311 100 VFIGVSR-PGVVKKEMIKKMAKDPIVFALANP 130 (226)
T ss_pred EEEeCCC-CCCCCHHHHHhhCCCCEEEEeCCC
Confidence 9999988 799999999999999888877743
No 126
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.49 E-value=0.0012 Score=70.28 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=63.5
Q ss_pred cEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHHHHh--hc-Cce-ecCHHHHhccCcEEEEcCCCCCCcC--
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINALQAS--ME-GYE-VTTMEEAAKEGGIFVTTTGCKDIIR-- 418 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a~--~~-G~~-v~~Leell~~aDiIi~atgt~~lI~-- 418 (718)
.+|+|||+|++|..+++.+...| .+|.++++++....... .. +.. ..+..++++++|+|+++.....+..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 47999999999999999998887 57888887653222211 11 233 3567888999999999866543321
Q ss_pred HHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
.+....++++..+|.+.-| +..+.|.+
T Consensus 82 ~~l~~~l~~~~~ivS~~aG---i~~~~l~~ 108 (277)
T PRK06928 82 KDCAPVLTPDRHVVSIAAG---VSLDDLLE 108 (277)
T ss_pred HHHHhhcCCCCEEEEECCC---CCHHHHHH
Confidence 1111335677778877665 44445544
No 127
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.48 E-value=0.00046 Score=75.74 Aligned_cols=95 Identities=23% Similarity=0.316 Sum_probs=71.7
Q ss_pred hhcccccCcEEEEEec-ChhHHHHHHHHHh-CCC-EEEEEecCCccHHHHhhc--CceecCHHHHhccCcEEEEcCCC-C
Q psy7896 341 YLDIMLAGKVAVVAGY-GDVGKGCAQSLRL-FGS-RVIVTEIDPINALQASME--GYEVTTMEEAAKEGGIFVTTTGC-K 414 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~-G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a~~~--G~~v~~Leell~~aDiIi~atgt-~ 414 (718)
.++..+.||+|.|+|. |.||+.+++.+.. .|. +++++++++.+......+ ...+.++++++.++|+|+.+++. .
T Consensus 148 ~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 148 RLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK 227 (340)
T ss_pred HhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc
Confidence 3466899999999998 8999999999964 575 888888765543221111 12345788999999999998775 4
Q ss_pred CC-cCHHHHhcCCCCeEEEEcCCCC
Q psy7896 415 DI-IRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 415 ~l-I~~e~l~~MK~gAiLIN~GRgd 438 (718)
.+ |+.+.+ +++.++|++|+--
T Consensus 228 ~~~I~~~~l---~~~~~viDiAvPR 249 (340)
T PRK14982 228 GVEIDPETL---KKPCLMIDGGYPK 249 (340)
T ss_pred CCcCCHHHh---CCCeEEEEecCCC
Confidence 43 787654 8999999999963
No 128
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.48 E-value=0.0002 Score=76.70 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=66.1
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHH---hccCcEEEEcCCCC---CCcCHHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEA---AKEGGIFVTTTGCK---DIIRGEH 421 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leel---l~~aDiIi~atgt~---~lI~~e~ 421 (718)
++|||||+|++|..+|+.+...|.+|.++|+++.+.......|.. ..+++++ ++.+|+|+++..+. .++ .+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~-~~l 79 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVL-EEL 79 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHH-HHH
Confidence 379999999999999999999999999999988654433334432 3455554 45689999876543 223 344
Q ss_pred HhcCCCCeEEEEcCCCC
Q psy7896 422 FLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd 438 (718)
...+++|.++|+++-..
T Consensus 80 ~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSY 96 (298)
T ss_pred HhhCCCCCEEEECCCCC
Confidence 56789999999998764
No 129
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.48 E-value=0.00081 Score=70.38 Aligned_cols=66 Identities=23% Similarity=0.251 Sum_probs=50.8
Q ss_pred cEEEEEecChhHHHHHHHHHhCC---CEEEEEecCCccHHHHhh-cCcee-cCHHHHhccCcEEEEcCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFG---SRVIVTEIDPINALQASM-EGYEV-TTMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fG---a~Viv~d~dp~~al~a~~-~G~~v-~~Leell~~aDiIi~atgt~ 414 (718)
++|+|||+|+||..+++.+..-| .+|.++++++........ .|..+ .+.++++.++|+|++++...
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~ 73 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ 73 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH
Confidence 57999999999999999998888 689999988754333222 25543 46778889999999987553
No 130
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.48 E-value=0.00025 Score=74.86 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=62.5
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCc--eecCHHHHhccCcEEEEcCCCCCCcC--HHHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGY--EVTTMEEAAKEGGIFVTTTGCKDIIR--GEHF 422 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~--~v~~Leell~~aDiIi~atgt~~lI~--~e~l 422 (718)
++|+|||+|.+|..+|+.++..|. +|+++|+++.....+...|. ...+.+++. ++|+|++++....+.. .+..
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~ 79 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLL 79 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHh
Confidence 379999999999999999988774 78889888765444444554 234667765 4999999876533221 2233
Q ss_pred hcCCCCeEEEEcCCC
Q psy7896 423 LQMRDDAIVCNIGHF 437 (718)
Q Consensus 423 ~~MK~gAiLIN~GRg 437 (718)
. ++++++++++|..
T Consensus 80 ~-l~~~~iv~d~gs~ 93 (275)
T PRK08507 80 D-IKENTTIIDLGST 93 (275)
T ss_pred c-cCCCCEEEECccc
Confidence 4 7889999998774
No 131
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.48 E-value=0.00023 Score=75.74 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=63.9
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------hcC-----------------ce-ecCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------MEG-----------------YE-VTTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------~~G-----------------~~-v~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+. ..+ .. ..++++++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5799999999999999999999999999999876432211 011 11 3467889999
Q ss_pred CcEEEEcCCCCCC----cCHHHHhcCCCCeEE-EEcCCC
Q psy7896 404 GGIFVTTTGCKDI----IRGEHFLQMRDDAIV-CNIGHF 437 (718)
Q Consensus 404 aDiIi~atgt~~l----I~~e~l~~MK~gAiL-IN~GRg 437 (718)
+|+|+.+..+.-- +-.+..+.+++++++ +|++..
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~ 120 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 9999988554321 112334567889876 788774
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.48 E-value=0.00045 Score=74.69 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=66.8
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-HhhcCceecC---HHHHhccCcEEEEcCCCCCC--cC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-ASMEGYEVTT---MEEAAKEGGIFVTTTGCKDI--IR 418 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a~~~G~~v~~---Leell~~aDiIi~atgt~~l--I~ 418 (718)
+.|++|+|||.|.||+.+++.++..|+ +|+++++++.+..+ +...|..+.+ +.+.++++|+|+++|+..+. +.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~ 255 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV 255 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence 789999999999999999999998775 78999988765422 2233444433 56778899999999987665 11
Q ss_pred HHHHhcC-CCCeEEEEcCCC
Q psy7896 419 GEHFLQM-RDDAIVCNIGHF 437 (718)
Q Consensus 419 ~e~l~~M-K~gAiLIN~GRg 437 (718)
+..++.. +.+.++++.+..
T Consensus 256 ~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 256 ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHhhCCCCCeEEEEeCCC
Confidence 2223222 367899999864
No 133
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.47 E-value=0.0012 Score=73.39 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=62.3
Q ss_pred cCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC---CcCHHHH
Q psy7896 347 AGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD---IIRGEHF 422 (718)
Q Consensus 347 ~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~---lI~~e~l 422 (718)
..++|+||| .|.+|..+|+.++..|..|+++++++. .+.+++++++|+|++++.... ++ +.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~~~~aDlVilavP~~~~~~~~--~~l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDILADAGMVIVSVPIHLTEEVI--ARL 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHHHhcCCEEEEeCcHHHHHHHH--HHH
Confidence 458999999 999999999999999999999987642 245678889999999865432 23 224
Q ss_pred hcCCCCeEEEEcCCCC
Q psy7896 423 LQMRDDAIVCNIGHFD 438 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd 438 (718)
..+++|++++++|...
T Consensus 163 ~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 163 PPLPEDCILVDLTSVK 178 (374)
T ss_pred hCCCCCcEEEECCCcc
Confidence 4489999999998864
No 134
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.46 E-value=0.00025 Score=75.54 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=65.8
Q ss_pred EEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----CcC--HHHHhcC
Q psy7896 353 VAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----IIR--GEHFLQM 425 (718)
Q Consensus 353 IIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI~--~e~l~~M 425 (718)
|||+|.+|..+|+.+...|.+|+++|+++.+.......|... .+..++++++|+|+++..+.. ++. ......+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 589999999999999999999999999886544444456543 478899999999999855422 221 2345678
Q ss_pred CCCeEEEEcCCC
Q psy7896 426 RDDAIVCNIGHF 437 (718)
Q Consensus 426 K~gAiLIN~GRg 437 (718)
+++.++||++-.
T Consensus 81 ~~g~~vid~st~ 92 (288)
T TIGR01692 81 AKGSLLIDCSTI 92 (288)
T ss_pred CCCCEEEECCCC
Confidence 999999999854
No 135
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.43 E-value=0.00039 Score=72.66 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=64.0
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC----EEEEE-ecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCCCcC--HH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS----RVIVT-EIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKDIIR--GE 420 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa----~Viv~-d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~lI~--~e 420 (718)
++|||||+|++|..+++.+..-|. +|+++ ++++.+.......|... .+..++++++|+|+++.....+-. .+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 479999999999999999988887 88888 87776544444457654 467888999999999864332211 12
Q ss_pred HHhcCCCCeEEEEcCCC
Q psy7896 421 HFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRg 437 (718)
....++++.++|++.-+
T Consensus 81 l~~~~~~~~~iIs~~~g 97 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAG 97 (266)
T ss_pred HHhhcCCCCEEEEecCC
Confidence 23456788888877544
No 136
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.42 E-value=0.00039 Score=83.57 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=74.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL------- 334 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~------- 334 (718)
..|++|+|||.|+.|+++|..|+.+|..|+++|..+..... -....|++++++ +...+..+|+.+...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v 508 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTI 508 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcC
Confidence 57999999999999999999999999999999975432100 001123333322 223334444443210
Q ss_pred --ch---------------hhhh-----------------hhc--------------ccccCcEEEEEecChhHHHHHHH
Q psy7896 335 --TE---------------DQAK-----------------YLD--------------IMLAGKVAVVAGYGDVGKGCAQS 366 (718)
Q Consensus 335 --~~---------------~~~~-----------------~~g--------------~eL~GktVGIIG~G~IG~~vA~~ 366 (718)
.. +..+ +.. ....||+|.|||.|++|..+|+.
T Consensus 509 ~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~ 588 (752)
T PRK12778 509 TIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSART 588 (752)
T ss_pred CHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHH
Confidence 00 0000 000 01357999999999999999999
Q ss_pred HHhCCCE-EEEEecC
Q psy7896 367 LRLFGSR-VIVTEID 380 (718)
Q Consensus 367 l~~fGa~-Viv~d~d 380 (718)
+..+|++ |+++.+.
T Consensus 589 ~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 589 AKRLGAERVTIVYRR 603 (752)
T ss_pred HHHcCCCeEEEeeec
Confidence 9999997 9887653
No 137
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.39 E-value=0.00082 Score=72.57 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=73.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHHHh----hcCce--ecCHHHHhccCcEEEEcCCC-CCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQAS----MEGYE--VTTMEEAAKEGGIFVTTTGC-KDI 416 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a~----~~G~~--v~~Leell~~aDiIi~atgt-~~l 416 (718)
...++++|||.|.+|+..++.+.. ++. +|.++++++.++.... ..++. +.+.+++++++|+|+++|.. ..+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~Pl 202 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRTPV 202 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCCce
Confidence 367899999999999999998864 675 6999999886543211 12333 34789999999999998764 445
Q ss_pred cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
|+. .+|+|+.+.++|.. ..|+|.+.+..
T Consensus 203 ~~~----~~~~g~hi~~iGs~~p~~~El~~~~~~~ 233 (304)
T PRK07340 203 YPE----AARAGRLVVAVGAFTPDMAELAPRTVRG 233 (304)
T ss_pred eCc----cCCCCCEEEecCCCCCCcccCCHHHHhh
Confidence 653 37999999999964 46888776665
No 138
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.38 E-value=0.0005 Score=85.18 Aligned_cols=111 Identities=23% Similarity=0.341 Sum_probs=73.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh--hhhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASMEGYELDEEV---AALHLEHLGVKLTKL------- 334 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v--~AvaeGf~L~r~i---~~~~l~~lgv~~~~~------- 334 (718)
..|++|+|||.|+.|+++|..|+++|+.|+|+|..+.... ......|++++++ +...+..+|+++...
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~ 507 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTF 507 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCcc
Confidence 3689999999999999999999999999999997653321 1112234444332 334444455544210
Q ss_pred --ch----------------hhhhhh---c-----------------------------ccccCcEEEEEecChhHHHHH
Q psy7896 335 --TE----------------DQAKYL---D-----------------------------IMLAGKVAVVAGYGDVGKGCA 364 (718)
Q Consensus 335 --~~----------------~~~~~~---g-----------------------------~eL~GktVGIIG~G~IG~~vA 364 (718)
.. +..+.. | ....||+|.|||.|++|..+|
T Consensus 508 ~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A 587 (1006)
T PRK12775 508 TVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCL 587 (1006)
T ss_pred CHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHH
Confidence 00 000000 1 013589999999999999999
Q ss_pred HHHHhCCCE-EEEE
Q psy7896 365 QSLRLFGSR-VIVT 377 (718)
Q Consensus 365 ~~l~~fGa~-Viv~ 377 (718)
+.+..+|++ |++.
T Consensus 588 ~~a~rlGa~~Vtiv 601 (1006)
T PRK12775 588 RVAKRLGAPTVRCV 601 (1006)
T ss_pred HHHHHcCCCEEEEE
Confidence 999999995 6543
No 139
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.37 E-value=0.00053 Score=84.31 Aligned_cols=115 Identities=23% Similarity=0.244 Sum_probs=75.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh--hhhhhhhhhhhHHH---HHHHHHHhcccccccc------
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYELDEEV---AALHLEHLGVKLTKLT------ 335 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~--v~AvaeGf~L~r~i---~~~~l~~lgv~~~~~~------ 335 (718)
..||+|+|||.|+.|+.+|..|+++|+.|+++|..+... ......+|++++++ +...+...|+++....
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~l 616 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTV 616 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeEEEh
Confidence 579999999999999999999999999999999765421 11122344444332 2233344444432100
Q ss_pred -h---------------hhhh----------------hh-------cccccCcEEEEEecChhHHHHHHHHHhCCC--EE
Q psy7896 336 -E---------------DQAK----------------YL-------DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS--RV 374 (718)
Q Consensus 336 -~---------------~~~~----------------~~-------g~eL~GktVGIIG~G~IG~~vA~~l~~fGa--~V 374 (718)
. +... +. ...-.||+|.|||.|++|..+|+.+..+|. +|
T Consensus 617 e~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeV 696 (1019)
T PRK09853 617 EQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKV 696 (1019)
T ss_pred hhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceE
Confidence 0 0000 00 011258999999999999999999988843 78
Q ss_pred EEEecCC
Q psy7896 375 IVTEIDP 381 (718)
Q Consensus 375 iv~d~dp 381 (718)
+++.+.+
T Consensus 697 TLVyRr~ 703 (1019)
T PRK09853 697 TVVYRRT 703 (1019)
T ss_pred EEEEccC
Confidence 8876544
No 140
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.36 E-value=0.00071 Score=69.84 Aligned_cols=85 Identities=24% Similarity=0.214 Sum_probs=58.6
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCC----------ccHHHHhhc-Cce------ecCHHHHh-cc
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDP----------INALQASME-GYE------VTTMEEAA-KE 403 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp----------~~al~a~~~-G~~------v~~Leell-~~ 403 (718)
+.++.|++|.|+|+|++|+.+|+.|..+|++ |.+.|.+. ......... +.. ..+-++++ .+
T Consensus 18 ~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (217)
T cd05211 18 GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLD 97 (217)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecc
Confidence 4678999999999999999999999999996 55577766 211111111 111 11223443 37
Q ss_pred CcEEEEcCCCCCCcCHHHHhcCCCC
Q psy7896 404 GGIFVTTTGCKDIIRGEHFLQMRDD 428 (718)
Q Consensus 404 aDiIi~atgt~~lI~~e~l~~MK~g 428 (718)
+|+++.|+.. ++|+.+....++-.
T Consensus 98 ~DVlipaA~~-~~i~~~~a~~l~a~ 121 (217)
T cd05211 98 VDIFAPCALG-NVIDLENAKKLKAK 121 (217)
T ss_pred ccEEeecccc-CccChhhHhhcCcc
Confidence 8999988765 58999988888743
No 141
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.34 E-value=0.00085 Score=67.14 Aligned_cols=96 Identities=23% Similarity=0.194 Sum_probs=64.9
Q ss_pred cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----cCce-----e---cCHHHHhccCcEEE
Q psy7896 343 DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----EGYE-----V---TTMEEAAKEGGIFV 408 (718)
Q Consensus 343 g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----~G~~-----v---~~Leell~~aDiIi 408 (718)
+..++++++.|+|. |.+|+.+++.+...|++|+++.+++.+...... .+.. . .++.++++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 56789999999996 999999999999999999999877644321110 1111 1 12346788999999
Q ss_pred EcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 409 ~atgt~~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
.++..........-...+++.+++++....
T Consensus 103 ~at~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 103 AAGAAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ECCCCCceechhhhcccCceeEEEEccCCC
Confidence 887543311111222345688999887754
No 142
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.32 E-value=0.00097 Score=74.80 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=71.0
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-HhhcCceecCHHH---HhccCcEEEEcCCCC-CCcC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-ASMEGYEVTTMEE---AAKEGGIFVTTTGCK-DIIR 418 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a~~~G~~v~~Lee---ll~~aDiIi~atgt~-~lI~ 418 (718)
+|.++++.|||+|.+|..+|+.|.+.|. +|++.++...++.+ +...|..+.+++| .+.++|+|+++|+.. .+|+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence 4899999999999999999999999995 78888888776543 3345666666655 578999999988754 4677
Q ss_pred HHHHhcC-C--CCeEEEEcCCC
Q psy7896 419 GEHFLQM-R--DDAIVCNIGHF 437 (718)
Q Consensus 419 ~e~l~~M-K--~gAiLIN~GRg 437 (718)
.+.+... + +.-++|++|-.
T Consensus 255 ~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 255 REMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred HHHHHHHHhcccCeEEEEecCC
Confidence 7766433 2 22678888764
No 143
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.29 E-value=0.00049 Score=73.15 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=61.9
Q ss_pred cCcEEEEEecChhHHHHHHHHHh--CCCEEE-EEecCCccHHHH-hhcC--ceecCHHHHhccCcEEEEcCCCCCCcCHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL--FGSRVI-VTEIDPINALQA-SMEG--YEVTTMEEAAKEGGIFVTTTGCKDIIRGE 420 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~--fGa~Vi-v~d~dp~~al~a-~~~G--~~v~~Leell~~aDiIi~atgt~~lI~~e 420 (718)
...+|||||+|+||+.+++.+.. .++++. +++++|.++.+. ...| ..+.++++++.++|+|+.++++. ...+-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~e~ 83 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLRAI 83 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHHHH
Confidence 45799999999999999999875 588876 678877654322 1223 23568999999999999998764 22222
Q ss_pred HHhcCCCCeEEEEcCCC
Q psy7896 421 HFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRg 437 (718)
....++.|.-+++.+.+
T Consensus 84 ~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 84 VEPVLAAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHcCCcEEEecch
Confidence 24455666655555443
No 144
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.29 E-value=0.00052 Score=72.52 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=64.1
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEec-------CCcc--HH--------------HHhhc---Ccee
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEI-------DPIN--AL--------------QASME---GYEV 394 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~-------dp~~--al--------------~a~~~---G~~v 394 (718)
.+.+++|+||.|.|+|++|+.+|+.|..+|++|+ +.|. +-.. ++ ..... +.+.
T Consensus 32 ~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~ 111 (254)
T cd05313 32 RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY 111 (254)
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE
Confidence 3678999999999999999999999999999999 5541 1111 11 00001 2334
Q ss_pred cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcCC-CCe-EEEEcCCCC
Q psy7896 395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQMR-DDA-IVCNIGHFD 438 (718)
Q Consensus 395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~MK-~gA-iLIN~GRgd 438 (718)
.+-++++ .+|||++.|. ..+.|+.+...+++ +++ +++-.+.+.
T Consensus 112 ~~~~~~~~~~~DIliPcA-l~~~I~~~na~~i~~~~ak~I~EgAN~p 157 (254)
T cd05313 112 FEGKKPWEVPCDIAFPCA-TQNEVDAEDAKLLVKNGCKYVAEGANMP 157 (254)
T ss_pred eCCcchhcCCCcEEEecc-ccccCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 4555654 3799999874 33689999988884 344 444444443
No 145
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.28 E-value=0.0005 Score=74.96 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=66.8
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-----------hcC---------ce-ecCHHHHhccCcEE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-----------MEG---------YE-VTTMEEAAKEGGIF 407 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-----------~~G---------~~-v~~Leell~~aDiI 407 (718)
++|+|||.|.||..+|..+...|.+|+++|++|.....+. ..| .. ..+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999999875321100 011 12 34788999999999
Q ss_pred EEcCC-C---CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 408 VTTTG-C---KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 408 i~atg-t---~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
+.+.. + +..+-++..+.++++++|.....+ +....+.+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~---l~~s~la~ 129 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIASSTSG---LLPTDFYA 129 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCc---cCHHHHHH
Confidence 98733 2 223335556788999966543332 34444443
No 146
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.28 E-value=0.0025 Score=65.66 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=56.7
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCC---CE-EEEEec-CCccHHHHh-hcCce-ecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFG---SR-VIVTEI-DPINALQAS-MEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fG---a~-Viv~d~-dp~~al~a~-~~G~~-v~~Leell~~aDiIi~atgt~~lI~~ 419 (718)
..++|+|||.|++|..+++.+...| .+ ++++++ ++.+..... ..+.. ..+.+++++++|+|++++..... .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~--~ 80 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAH--E 80 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHH--H
Confidence 4578999999999999999887665 33 666765 333322221 23443 35688899999999998765422 2
Q ss_pred HHHhcCC---CCeEEEEcCCC
Q psy7896 420 EHFLQMR---DDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK---~gAiLIN~GRg 437 (718)
+.++.++ ++.++|.+.-|
T Consensus 81 ~v~~~l~~~~~~~~vis~~~g 101 (245)
T PRK07634 81 ELLAELSPLLSNQLVVTVAAG 101 (245)
T ss_pred HHHHHHHhhccCCEEEEECCC
Confidence 3333222 24466666554
No 147
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.27 E-value=0.00045 Score=70.63 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=66.4
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--C-HHHHhccCcEEEEcCCCCCCcC
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--T-MEEAAKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~-Leell~~aDiIi~atgt~~lI~ 418 (718)
.+++||+|.|||.|.+|..-++.|...|++|++++.++...++.. ..| +... + -.+.+..+|+|+.+|+.. -+|
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~-~ln 83 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE-ELN 83 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH-HHH
Confidence 368999999999999999999999999999999987665443322 222 2221 1 135577899999998874 345
Q ss_pred HHHHhcCCCCeEEEEcCC
Q psy7896 419 GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GR 436 (718)
.......+.-.++||+.-
T Consensus 84 ~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 84 RRVAHAARARGVPVNVVD 101 (205)
T ss_pred HHHHHHHHHcCCEEEECC
Confidence 556666666678888653
No 148
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.26 E-value=0.0036 Score=69.59 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=62.7
Q ss_pred cCcEEEEEec-ChhHHHHHHHHHh-CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCC---cCHHH
Q psy7896 347 AGKVAVVAGY-GDVGKGCAQSLRL-FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDI---IRGEH 421 (718)
Q Consensus 347 ~GktVGIIG~-G~IG~~vA~~l~~-fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~l---I~~e~ 421 (718)
...||+|||+ |.||..+|+.++. +|.+|+++|++. + ...+.++.++++|+|++|+.-..+ +. +.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d--------~--~~~~~~~~v~~aDlVilavPv~~~~~~l~-~l 71 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD--------P--GSLDPATLLQRADVLIFSAPIRHTAALIE-EY 71 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc--------c--ccCCHHHHhcCCCEEEEeCCHHHHHHHHH-HH
Confidence 4579999999 9999999999985 588999997631 1 123577889999999998764322 22 11
Q ss_pred H---hcCCCCeEEEEcCCCCccc
Q psy7896 422 F---LQMRDDAIVCNIGHFDCEI 441 (718)
Q Consensus 422 l---~~MK~gAiLIN~GRgd~Ei 441 (718)
. ..+|+++++.++|....++
T Consensus 72 ~~~~~~l~~~~iVtDVgSvK~~i 94 (370)
T PRK08818 72 VALAGGRAAGQLWLDVTSIKQAP 94 (370)
T ss_pred hhhhcCCCCCeEEEECCCCcHHH
Confidence 1 2379999999999976433
No 149
>PLN02858 fructose-bisphosphate aldolase
Probab=97.25 E-value=0.0007 Score=86.19 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=71.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCCCC----CCc--CH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTGCK----DII--RG 419 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atgt~----~lI--~~ 419 (718)
..++||+||+|++|..+|+.|...|.+|+++|+++.+.......|. ...+..++++++|+|+++..+. .++ ..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 4689999999999999999999999999999988765433333454 3457889999999999975532 233 22
Q ss_pred HHHhcCCCCeEEEEcCCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRgd 438 (718)
..++.|++|.++|+++-.+
T Consensus 403 g~~~~l~~g~ivVd~STvs 421 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVS 421 (1378)
T ss_pred hHHhcCCCCCEEEECCCCC
Confidence 3567889999999998754
No 150
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.25 E-value=0.00073 Score=75.59 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=64.9
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------------------hcC-cee-cCHHHHhccCcEE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------------------MEG-YEV-TTMEEAAKEGGIF 407 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------------------~~G-~~v-~~Leell~~aDiI 407 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++.+..... ..| ... .+.+++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999999999998876432111 123 222 4678889999999
Q ss_pred EEcCCCCC----------CcC--HHHHhcCCCCeEEEEcCCC
Q psy7896 408 VTTTGCKD----------IIR--GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 408 i~atgt~~----------lI~--~e~l~~MK~gAiLIN~GRg 437 (718)
+++.++.. +.. ....+.++++.++++.+-.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv 122 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV 122 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence 99866532 211 2234568999999998753
No 151
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.24 E-value=0.00071 Score=72.04 Aligned_cols=88 Identities=19% Similarity=0.276 Sum_probs=61.8
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-----------hcC-------------ce-ecCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-----------MEG-------------YE-VTTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-----------~~G-------------~~-v~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+. ..| .. ..+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998875422111 112 12 23454 5789
Q ss_pred CcEEEEcCCCC----CCcCHHHHhcCCCCeEEE-EcCCC
Q psy7896 404 GGIFVTTTGCK----DIIRGEHFLQMRDDAIVC-NIGHF 437 (718)
Q Consensus 404 aDiIi~atgt~----~lI~~e~l~~MK~gAiLI-N~GRg 437 (718)
+|+|+.+.... ..+-.+....++++++++ |++..
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 99999986442 122233445679999887 77664
No 152
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.22 E-value=0.0018 Score=70.42 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=72.4
Q ss_pred cCcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHHHh-----hcCce---ecCHHHHhccCcEEEEcCCCCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQAS-----MEGYE---VTTMEEAAKEGGIFVTTTGCKDI 416 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~a~-----~~G~~---v~~Leell~~aDiIi~atgt~~l 416 (718)
..++++|||.|.+|+..++.+. ..+. +|.++++++.+..+.. ..+.. +.+++++++++|+|+++|...+-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p 205 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP 205 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence 5789999999999998887664 5676 6888998886543211 12333 45789999999999999876554
Q ss_pred cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
+- . +.+|+|+.++.+|.. ..|+|.+.+..
T Consensus 206 ~i--~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~ 237 (325)
T PRK08618 206 VF--S-EKLKKGVHINAVGSFMPDMQELPSEAIAR 237 (325)
T ss_pred ch--H-HhcCCCcEEEecCCCCcccccCCHHHHhh
Confidence 32 2 567999999999874 35777665554
No 153
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.22 E-value=0.0011 Score=78.51 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=34.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 303 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~ 303 (718)
..|++|+|||.|+.|+.+|..|++.|..|+++|..+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999999999999997653
No 154
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.21 E-value=0.0008 Score=71.96 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=63.4
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--------------Cce-ecCHHHHhccCcEEEEcCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME--------------GYE-VTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--------------G~~-v~~Leell~~aDiIi~atgt 413 (718)
++|+|||.|.+|..+|..+..-|.+|+++++++....+.... +.. ..+.+++++.+|+|++++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999887543222222 222 34677888999999998765
Q ss_pred CCCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896 414 KDII--RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~lI--~~e~l~~MK~gAiLIN~GRg 437 (718)
..+- -.+....++++.+++++..+
T Consensus 82 ~~~~~v~~~l~~~~~~~~~vi~~~ng 107 (325)
T PRK00094 82 QALREVLKQLKPLLPPDAPIVWATKG 107 (325)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 3221 11223455788899988643
No 155
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.20 E-value=0.00025 Score=64.54 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=58.9
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--ecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--VTTMEEAAKEGGIFVTTTGCKDIIRGEH 421 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--v~~Leell~~aDiIi~atgt~~lI~~e~ 421 (718)
..++|++|.|||.|++|..-++.|...|++|+++.++. ...+ ..+. ...+++.+..+|+|+.+|++. -++.+.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-~~~~---~~i~~~~~~~~~~l~~~~lV~~at~d~-~~n~~i 77 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-EFSE---GLIQLIRREFEEDLDGADLVFAATDDP-ELNEAI 77 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-HHHH---TSCEEEESS-GGGCTTESEEEE-SS-H-HHHHHH
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-hhhh---hHHHHHhhhHHHHHhhheEEEecCCCH-HHHHHH
Confidence 36899999999999999999999999999999997664 1111 1121 224456678889999888774 345555
Q ss_pred HhcCCCCeEEEEcCC
Q psy7896 422 FLQMRDDAIVCNIGH 436 (718)
Q Consensus 422 l~~MK~gAiLIN~GR 436 (718)
....+.--+++|+.-
T Consensus 78 ~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 78 YADARARGILVNVVD 92 (103)
T ss_dssp HHHHHHTTSEEEETT
T ss_pred HHHHhhCCEEEEECC
Confidence 555565667777643
No 156
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.20 E-value=0.00075 Score=77.52 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=67.6
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh----cCc----eecCHHHHhcc---CcEEEEcCCC----C
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM----EGY----EVTTMEEAAKE---GGIFVTTTGC----K 414 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~----~G~----~v~~Leell~~---aDiIi~atgt----~ 414 (718)
+||+||+|.+|+.+|+.|..-|.+|.+||+++.+...... .|. ...+++|+++. +|+|+++-.+ .
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999998865432221 143 24578888875 9999987433 2
Q ss_pred CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 415 DIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 415 ~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
.++ ...+..|++|.++|++|...
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCC
Confidence 234 34578899999999998864
No 157
>PLN02858 fructose-bisphosphate aldolase
Probab=97.20 E-value=0.00081 Score=85.59 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=71.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----Cc-C-H
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----II-R-G 419 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI-~-~ 419 (718)
..++||+||+|++|..+|++|..-|.+|.+||+++.+.......|.. ..+..|+.+.||+|+++-.+.. ++ . .
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 46789999999999999999999999999999988765444445654 4579999999999998743322 22 2 2
Q ss_pred HHHhcCCCCeEEEEcCCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRgd 438 (718)
..++.+++|.++|+++-.+
T Consensus 83 g~~~~l~~g~iivd~STi~ 101 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTIL 101 (1378)
T ss_pred hHHhcCCCcCEEEECCCCC
Confidence 3456789999999998653
No 158
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.18 E-value=0.0011 Score=81.65 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=73.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL------- 334 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~------- 334 (718)
..+++|+|||.|+.|+++|+.|+++|+.|+++|..+..... .....|+++++. ....+..+|+++...
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d~~v 614 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTV 614 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccceEh
Confidence 35789999999999999999999999999999976532111 111223333321 223333344443100
Q ss_pred ch---------------hhh----------------hhh-------cccccCcEEEEEecChhHHHHHHHHHhC-CC-EE
Q psy7896 335 TE---------------DQA----------------KYL-------DIMLAGKVAVVAGYGDVGKGCAQSLRLF-GS-RV 374 (718)
Q Consensus 335 ~~---------------~~~----------------~~~-------g~eL~GktVGIIG~G~IG~~vA~~l~~f-Ga-~V 374 (718)
.. +.. .+. .....||+|.|||.|++|..+|+.+..+ |+ +|
T Consensus 615 e~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kV 694 (1012)
T TIGR03315 615 AELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKV 694 (1012)
T ss_pred hhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceE
Confidence 00 000 000 0123689999999999999999999877 87 68
Q ss_pred EEEecCC
Q psy7896 375 IVTEIDP 381 (718)
Q Consensus 375 iv~d~dp 381 (718)
+++.+++
T Consensus 695 tLVyRr~ 701 (1012)
T TIGR03315 695 TVVYRRT 701 (1012)
T ss_pred EEEEccC
Confidence 8876543
No 159
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.17 E-value=0.00083 Score=76.13 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=63.0
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEE-e----------cCCccHHH----------Hhhc--CceecCHH
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT-E----------IDPINALQ----------ASME--GYEVTTME 398 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~-d----------~dp~~al~----------a~~~--G~~v~~Le 398 (718)
.+.+++|+||.|.|+|+||+.+|+.|..+|++|+++ | .|+....+ .... |.+..+.+
T Consensus 226 ~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~ 305 (445)
T PRK09414 226 RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGG 305 (445)
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCc
Confidence 367899999999999999999999999999999976 6 33321111 0000 22233445
Q ss_pred HHhc-cCcEEEEcCCCCCCcCHHHHhcCC-CCeEEEE
Q psy7896 399 EAAK-EGGIFVTTTGCKDIIRGEHFLQMR-DDAIVCN 433 (718)
Q Consensus 399 ell~-~aDiIi~atgt~~lI~~e~l~~MK-~gAiLIN 433 (718)
+++. +|||++.|+. .+.|+.+....++ +++.+|-
T Consensus 306 ~i~~~d~DVliPaAl-~n~It~~~a~~i~~~~akiIv 341 (445)
T PRK09414 306 SPWSVPCDIALPCAT-QNELDEEDAKTLIANGVKAVA 341 (445)
T ss_pred cccccCCcEEEecCC-cCcCCHHHHHHHHHcCCeEEE
Confidence 5544 7999999865 3689998887773 3454443
No 160
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.16 E-value=0.0018 Score=68.66 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=63.7
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHHHH--hhcCce-ecCHHHHhccCcEEEEcCCCCCCcC-
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINALQA--SMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIR- 418 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a--~~~G~~-v~~Leell~~aDiIi~atgt~~lI~- 418 (718)
++++|+|||+|++|..+++.+..-| .+|+++++++....+. ...|.. ..+..++++++|+|+++.....+..
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v 81 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA 81 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence 4579999999999999999998877 6789998765332222 123554 3467888999999999865543311
Q ss_pred -HHHHhcCCCCeEEEEcCCC
Q psy7896 419 -GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 419 -~e~l~~MK~gAiLIN~GRg 437 (718)
.+....++++.++|.+.-+
T Consensus 82 l~~l~~~~~~~~liIs~~aG 101 (279)
T PRK07679 82 LIPFKEYIHNNQLIISLLAG 101 (279)
T ss_pred HHHHHhhcCCCCEEEEECCC
Confidence 2223446788899997443
No 161
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.15 E-value=0.0014 Score=68.52 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=59.7
Q ss_pred EEEEEecChhHHHHHHHHHhCCCE---EEEEecCCccHHHHhh-c-Ccee-cCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSR---VIVTEIDPINALQASM-E-GYEV-TTMEEAAKEGGIFVTTTGCKDIIRGEHFL 423 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~---Viv~d~dp~~al~a~~-~-G~~v-~~Leell~~aDiIi~atgt~~lI~~e~l~ 423 (718)
+|||||+|++|+.+++.+...|-. +.++++++.+..+... . |... .+..++++++|+|++++....+ .+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~--~~vl~ 79 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIA--EEVLR 79 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHH--HHHHH
Confidence 799999999999999999877743 5778777654332222 2 3443 5788899999999998764332 12222
Q ss_pred --cCCCCeEEEEcCCC
Q psy7896 424 --QMRDDAIVCNIGHF 437 (718)
Q Consensus 424 --~MK~gAiLIN~GRg 437 (718)
.++++.++|.+.-+
T Consensus 80 ~l~~~~~~~vis~~ag 95 (258)
T PRK06476 80 ALRFRPGQTVISVIAA 95 (258)
T ss_pred HhccCCCCEEEEECCC
Confidence 24678888887754
No 162
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.13 E-value=0.001 Score=64.87 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=59.7
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--HHHhh------cCc------e-ecCHHHHhccCcEEEEcCCCC
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASM------EGY------E-VTTMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l~a~~------~G~------~-v~~Leell~~aDiIi~atgt~ 414 (718)
+|+|+|.|+.|.++|..+...|.+|.++.+++... +.... .+. . ..+++++++.+|+|+++..+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999998876422 11111 111 1 247899999999999987665
Q ss_pred CC--cCHHHHhcCCCCeEEEEcCCC
Q psy7896 415 DI--IRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 415 ~l--I~~e~l~~MK~gAiLIN~GRg 437 (718)
.+ +-++....++++..++++..|
T Consensus 81 ~~~~~~~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 AHREVLEQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp GHHHHHHHHTTTSHTT-EEEETS-S
T ss_pred HHHHHHHHHhhccCCCCEEEEecCC
Confidence 43 122233455788899998766
No 163
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.12 E-value=0.0015 Score=77.53 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=70.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhcccccc--------
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTK-------- 333 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~-------- 333 (718)
..+++|+|||.|+.|+.+|..|+.+|++|+++|..+...-. .....|.+++.+ ....+..+|+++..
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 46899999999999999999999999999999976542100 000112222111 11122222222110
Q ss_pred --------c-------chhhh-----------------hhh------cccccCcEEEEEecChhHHHHHHHHHhCCC-EE
Q psy7896 334 --------L-------TEDQA-----------------KYL------DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RV 374 (718)
Q Consensus 334 --------~-------~~~~~-----------------~~~------g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~V 374 (718)
+ ..+.. .+. .....||+|.|||.|++|..+|+.+..+|+ +|
T Consensus 271 ~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~V 350 (652)
T PRK12814 271 TLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESV 350 (652)
T ss_pred CHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 0 00000 000 113468999999999999999999999998 58
Q ss_pred EEEecC
Q psy7896 375 IVTEID 380 (718)
Q Consensus 375 iv~d~d 380 (718)
+++.+.
T Consensus 351 tlv~r~ 356 (652)
T PRK12814 351 TILYRR 356 (652)
T ss_pred EEeeec
Confidence 876543
No 164
>PLN02477 glutamate dehydrogenase
Probab=97.12 E-value=0.0011 Score=74.40 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=60.5
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecC----------CccHHHHh--------hcCceecCHHHHh-
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEID----------PINALQAS--------MEGYEVTTMEEAA- 401 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~d----------p~~al~a~--------~~G~~v~~Leell- 401 (718)
.|.+++|++|.|.|+|+||+.+|+.|...|++|+ +.|.+ +....+.. ..+.+..+-++++
T Consensus 200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~ 279 (410)
T PLN02477 200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV 279 (410)
T ss_pred cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence 4678999999999999999999999999999999 66654 11111100 0122333445553
Q ss_pred ccCcEEEEcCCCCCCcCHHHHhcCCCCe
Q psy7896 402 KEGGIFVTTTGCKDIIRGEHFLQMRDDA 429 (718)
Q Consensus 402 ~~aDiIi~atgt~~lI~~e~l~~MK~gA 429 (718)
.++||++.|.- .+.|+++...++|...
T Consensus 280 ~~~DvliP~Al-~~~I~~~na~~i~ak~ 306 (410)
T PLN02477 280 EPCDVLIPAAL-GGVINKENAADVKAKF 306 (410)
T ss_pred ccccEEeeccc-cccCCHhHHHHcCCcE
Confidence 47999998752 3489999998886543
No 165
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.10 E-value=0.0016 Score=66.97 Aligned_cols=88 Identities=22% Similarity=0.156 Sum_probs=63.3
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH----hhcCceecCHHHHhccCcEEEEcCCCCCCc--CHHHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA----SMEGYEVTTMEEAAKEGGIFVTTTGCKDII--RGEHF 422 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a----~~~G~~v~~Leell~~aDiIi~atgt~~lI--~~e~l 422 (718)
++++|+|.|+||..+|+++...|.+|++-.++..+++.+ ........+.+++.+.+|+|+++..-..+. .++..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~ 81 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR 81 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence 589999999999999999999999999985444333322 222344567889999999999986544332 23333
Q ss_pred hcCCCCeEEEEcCCC
Q psy7896 423 LQMRDDAIVCNIGHF 437 (718)
Q Consensus 423 ~~MK~gAiLIN~GRg 437 (718)
..+. |.++|++...
T Consensus 82 ~~~~-~KIvID~tnp 95 (211)
T COG2085 82 DALG-GKIVIDATNP 95 (211)
T ss_pred HHhC-CeEEEecCCC
Confidence 4454 7888887664
No 166
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.09 E-value=0.00093 Score=76.38 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=66.6
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh----cCc---eecCHHHHhc---cCcEEEEc-CCC---C
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM----EGY---EVTTMEEAAK---EGGIFVTT-TGC---K 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~----~G~---~v~~Leell~---~aDiIi~a-tgt---~ 414 (718)
.+|||||+|.+|..+|+.|..-|.+|.+||+++.+..+... .|. ...+++|+++ ++|+|+++ +.. .
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 37999999999999999999999999999998875332221 143 2457889886 48977765 322 3
Q ss_pred CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 415 DIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 415 ~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
.++ .+.+..+++|.++|++|.+.
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCC
Confidence 344 34567889999999999864
No 167
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.09 E-value=0.00097 Score=68.00 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=61.4
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--CH-HHHhccCcEEEEcCCCCCCcC
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--TM-EEAAKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~L-eell~~aDiIi~atgt~~lI~ 418 (718)
.++.||+|.|||.|.+|...++.|...|++|++++++....+... ..+ .... .+ ++.+..+|+|+.+|++. -+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-elN 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RVN 84 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HHH
Confidence 468999999999999999999999999999999976654433222 222 2221 22 34577899999998874 334
Q ss_pred HHHHhcCCCCeEEEEcCC
Q psy7896 419 GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GR 436 (718)
.......+.+ +++|+.-
T Consensus 85 ~~i~~~a~~~-~lvn~~d 101 (202)
T PRK06718 85 EQVKEDLPEN-ALFNVIT 101 (202)
T ss_pred HHHHHHHHhC-CcEEECC
Confidence 3333333444 5777643
No 168
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.09 E-value=0.0027 Score=69.25 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=71.1
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-C-CCEEEEEecCCccHHH--Hh--hcCce---ecCHHHHhccCcEEEEcCCC-CCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-F-GSRVIVTEIDPINALQ--AS--MEGYE---VTTMEEAAKEGGIFVTTTGC-KDI 416 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-f-Ga~Viv~d~dp~~al~--a~--~~G~~---v~~Leell~~aDiIi~atgt-~~l 416 (718)
.-+++||||.|.+|+..++.+.. + .-+|.++++++.+... .. ..|.. +.+.+++++++|+|+++|.. ..+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~ 206 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPV 206 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcE
Confidence 35899999999999987766543 2 3479999988865422 11 22422 45799999999999998754 345
Q ss_pred cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
+..+ .+|+|+.+.++|.. ..|+|.+.+..
T Consensus 207 ~~~~---~l~~g~~v~~vGs~~p~~~Eld~~~l~~ 238 (325)
T TIGR02371 207 VKAD---WVSEGTHINAIGADAPGKQELDPEILKN 238 (325)
T ss_pred ecHH---HcCCCCEEEecCCCCcccccCCHHHHhc
Confidence 6543 56999999999953 35788766654
No 169
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.08 E-value=0.00057 Score=65.03 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=54.1
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEe-cCCccHHHHh--hcCceecCHHHHhccCcEEEEcCCCCCCcC--HHHH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE-IDPINALQAS--MEGYEVTTMEEAAKEGGIFVTTTGCKDIIR--GEHF 422 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d-~dp~~al~a~--~~G~~v~~Leell~~aDiIi~atgt~~lI~--~e~l 422 (718)
-.+|+|||.|++|..+++.|..-|..|..+. +++..+..+. ..+..+.+++|+++++|++++++....+ . .+.+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI-~~va~~L 88 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAI-AEVAEQL 88 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHH-HHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHH-HHHHHHH
Confidence 3689999999999999999999999988763 4343332222 2234566788999999999998765432 2 1234
Q ss_pred hc---CCCCeEEEEcCCC
Q psy7896 423 LQ---MRDDAIVCNIGHF 437 (718)
Q Consensus 423 ~~---MK~gAiLIN~GRg 437 (718)
.. .++|.+++-++-.
T Consensus 89 a~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 89 AQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp HCC--S-TT-EEEES-SS
T ss_pred HHhccCCCCcEEEECCCC
Confidence 33 5789999988653
No 170
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.08 E-value=0.0019 Score=73.00 Aligned_cols=114 Identities=23% Similarity=0.287 Sum_probs=70.3
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL------- 334 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~------- 334 (718)
..+++++|||.|+.|+.+|..|+.+|..|+++|..+..... -....+.+..++ ....+..+++.+...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v 217 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDI 217 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCcc
Confidence 46899999999999999999999999999999976432100 000011111111 111122222221100
Q ss_pred ----------------chhhh-----------------hhh-c-------cc-ccCcEEEEEecChhHHHHHHHHHhCCC
Q psy7896 335 ----------------TEDQA-----------------KYL-D-------IM-LAGKVAVVAGYGDVGKGCAQSLRLFGS 372 (718)
Q Consensus 335 ----------------~~~~~-----------------~~~-g-------~e-L~GktVGIIG~G~IG~~vA~~l~~fGa 372 (718)
..... .+. . .. ..|++|.|||.|.+|..+|..+..+|+
T Consensus 218 ~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~ 297 (457)
T PRK11749 218 TLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA 297 (457)
T ss_pred CHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 00000 000 0 11 258999999999999999999999999
Q ss_pred -EEEEEecC
Q psy7896 373 -RVIVTEID 380 (718)
Q Consensus 373 -~Viv~d~d 380 (718)
+|+++.+.
T Consensus 298 ~~Vtlv~~~ 306 (457)
T PRK11749 298 ESVTIVYRR 306 (457)
T ss_pred CeEEEeeec
Confidence 89988654
No 171
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.07 E-value=0.0015 Score=74.12 Aligned_cols=93 Identities=22% Similarity=0.338 Sum_probs=64.7
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEE-Ee----------cCCccH-------------HHHh--hcCceec
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV-TE----------IDPINA-------------LQAS--MEGYEVT 395 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv-~d----------~dp~~a-------------l~a~--~~G~~v~ 395 (718)
.|.+|+|+||.|.|+|++|+..|+.|..+|++|++ .| .|+... +... ..+..+.
T Consensus 222 ~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i 301 (444)
T PRK14031 222 KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV 301 (444)
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc
Confidence 36789999999999999999999999999999997 45 222110 0000 0133444
Q ss_pred CHHHHh-ccCcEEEEcCCCCCCcCHHHHhcCCC-CeEEEEcC
Q psy7896 396 TMEEAA-KEGGIFVTTTGCKDIIRGEHFLQMRD-DAIVCNIG 435 (718)
Q Consensus 396 ~Leell-~~aDiIi~atgt~~lI~~e~l~~MK~-gAiLIN~G 435 (718)
+-++++ ..|||++.|.- .+.|+.+...+++. ++.+|--|
T Consensus 302 ~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~g~~~V~Eg 342 (444)
T PRK14031 302 EGARPWGEKGDIALPSAT-QNELNGDDARQLVANGVIAVSEG 342 (444)
T ss_pred CCcccccCCCcEEeeccc-ccccCHHHHHHHHhcCCeEEECC
Confidence 555654 36999998754 36899999999866 45444443
No 172
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.06 E-value=0.0019 Score=73.46 Aligned_cols=37 Identities=32% Similarity=0.359 Sum_probs=33.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 303 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~ 303 (718)
..+++++|||.|+.|+.+|..|+++|.+|+++|..+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4688999999999999999999999999999997653
No 173
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.05 E-value=0.0012 Score=78.90 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=66.5
Q ss_pred cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHHHHhhcCce---ecCHHHHhccCcEEEEcCCCCCCcC--HHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINALQASMEGYE---VTTMEEAAKEGGIFVTTTGCKDIIR--GEH 421 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al~a~~~G~~---v~~Leell~~aDiIi~atgt~~lI~--~e~ 421 (718)
++|+|||+|.+|..+++.++..| .+|+++|+++.+...+...|.. ..+++++++++|+|++++....+.. .+.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l 83 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADL 83 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 68999999999999999999888 5899999887654444445542 3467888999999999876532211 122
Q ss_pred HhcCCCCeEEEEcCCCC
Q psy7896 422 FLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd 438 (718)
-..++++.++++++...
T Consensus 84 ~~~~~~~~ii~d~~svk 100 (735)
T PRK14806 84 KPLLSEHAIVTDVGSTK 100 (735)
T ss_pred HHhcCCCcEEEEcCCCc
Confidence 23457889999998754
No 174
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.04 E-value=0.0023 Score=70.16 Aligned_cols=84 Identities=23% Similarity=0.209 Sum_probs=61.7
Q ss_pred EEEEecChhHHHHHHHHHh-CCCEEEE-EecCCccHH-HHhhcCce------------------e-cCHHHHhccCcEEE
Q psy7896 351 AVVAGYGDVGKGCAQSLRL-FGSRVIV-TEIDPINAL-QASMEGYE------------------V-TTMEEAAKEGGIFV 408 (718)
Q Consensus 351 VGIIG~G~IG~~vA~~l~~-fGa~Viv-~d~dp~~al-~a~~~G~~------------------v-~~Leell~~aDiIi 408 (718)
|||+|||+||+.+++.+.. -+++|+. .|.+|.... -+...|+. + .++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6899999999999998764 4677665 565554211 11111221 1 25889999999999
Q ss_pred EcCC-CCCCcCHHHHhcCCCCeEEEEc
Q psy7896 409 TTTG-CKDIIRGEHFLQMRDDAIVCNI 434 (718)
Q Consensus 409 ~atg-t~~lI~~e~l~~MK~gAiLIN~ 434 (718)
.+|+ +.+..+++.+.+|+.+++|+-.
T Consensus 81 e~Tp~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 81 DATPGGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred ECCCCCCChhhHHHHHhCCcCEEEECC
Confidence 9876 5789999999999999999853
No 175
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.02 E-value=0.0017 Score=69.11 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=52.6
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhh--cC---cee-cCHHHHhccCcEEEEcCCC
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASM--EG---YEV-TTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~--~G---~~v-~~Leell~~aDiIi~atgt 413 (718)
+..+.++++.|+|.|.+|++++..|..+| .+|+++++++.++..... .. ..+ .++.+.+.++|+||.+|..
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSA 195 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcC
Confidence 45688999999999999999999999999 699999988765422111 11 122 2345677889999988653
No 176
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0013 Score=70.48 Aligned_cols=99 Identities=22% Similarity=0.283 Sum_probs=67.9
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH--HHhhcCcee---cCH-HHHhccCcEEEEcCCC---CCCcC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASMEGYEV---TTM-EEAAKEGGIFVTTTGC---KDIIR 418 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al--~a~~~G~~v---~~L-eell~~aDiIi~atgt---~~lI~ 418 (718)
-++|+|+|+|.||..+|+.++.-|..|.+++.|..... .+...|... .+. .+.++.+|+|++++.- ..++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~ 82 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLK 82 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHH
Confidence 46899999999999999999999999988877765432 222233321 222 5677889999998652 22222
Q ss_pred HHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
+....+|+|+++.+++.....+ ++++..
T Consensus 83 -~l~~~l~~g~iv~Dv~S~K~~v-~~a~~~ 110 (279)
T COG0287 83 -ELAPHLKKGAIVTDVGSVKSSV-VEAMEK 110 (279)
T ss_pred -HhcccCCCCCEEEecccccHHH-HHHHHH
Confidence 2333789999999999976332 344443
No 177
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.01 E-value=0.0023 Score=75.77 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=34.3
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 303 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~ 303 (718)
..|++++|||.|+.|+.+|..|+++|+.|+++|..+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4699999999999999999999999999999997764
No 178
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0018 Score=72.15 Aligned_cols=95 Identities=24% Similarity=0.314 Sum_probs=68.0
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc------------------cH-HHHhhcCceecCHHHHhc
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI------------------NA-LQASMEGYEVTTMEEAAK 402 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~------------------~a-l~a~~~G~~v~~Leell~ 402 (718)
.+..|+|+||.|-|+|++|+.+|+.+..+|++|++++...- +. ......|.++.+-++++.
T Consensus 201 ~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~ 280 (411)
T COG0334 201 LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLE 280 (411)
T ss_pred cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcccccccc
Confidence 45569999999999999999999999999999999764432 00 001122344555577764
Q ss_pred -cCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 403 -EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 403 -~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
+|||++.|. ..+.|+.+...++|.. +++-.+.++
T Consensus 281 ~~cDIl~PcA-~~n~I~~~na~~l~ak-~V~EgAN~P 315 (411)
T COG0334 281 VDCDILIPCA-LENVITEDNADQLKAK-IVVEGANGP 315 (411)
T ss_pred ccCcEEcccc-cccccchhhHHHhhhc-EEEeccCCC
Confidence 799998763 3357999999999888 555555554
No 179
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.96 E-value=0.003 Score=72.30 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=33.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp 302 (718)
..|++++|||.|+.|+.+|..|++.|..|++++..+
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 367899999999999999999999999999998765
No 180
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.96 E-value=0.0013 Score=69.03 Aligned_cols=91 Identities=22% Similarity=0.365 Sum_probs=64.6
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEE--------ecCCccH--HHH--hhcC-------------ceecCHH
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT--------EIDPINA--LQA--SMEG-------------YEVTTME 398 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~--------d~dp~~a--l~a--~~~G-------------~~v~~Le 398 (718)
.+++|++|.|.|+|++|+.+|+.|...|++|+.+ |++.... +.. ...| ..+.+-+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 4599999999999999999999999999998775 5444321 111 0111 1223332
Q ss_pred -HHh-ccCcEEEEcCCCCCCcCHHHHh-cCCCCeEEEEcC
Q psy7896 399 -EAA-KEGGIFVTTTGCKDIIRGEHFL-QMRDDAIVCNIG 435 (718)
Q Consensus 399 -ell-~~aDiIi~atgt~~lI~~e~l~-~MK~gAiLIN~G 435 (718)
+++ .++||++.| ...+.|+.+... .++.++.+|--|
T Consensus 108 ~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~~akiIveg 146 (244)
T PF00208_consen 108 DEILSVDCDILIPC-ALGNVINEDNAPSLIKSGAKIIVEG 146 (244)
T ss_dssp CHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHTT-SEEEES
T ss_pred cccccccccEEEEc-CCCCeeCHHHHHHHHhccCcEEEeC
Confidence 666 489999998 445789999999 999888666544
No 181
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.96 E-value=0.0039 Score=67.61 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=68.4
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-CC-CEEEEEecCCccHHHHhh----cC--ce-ecCHHHHhccCcEEEEcCCC-CCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-FG-SRVIVTEIDPINALQASM----EG--YE-VTTMEEAAKEGGIFVTTTGC-KDI 416 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-fG-a~Viv~d~dp~~al~a~~----~G--~~-v~~Leell~~aDiIi~atgt-~~l 416 (718)
..++|+|||.|..|+..++.+.. ++ -+|.++++++.+..+... .| +. +.+.+++++++|+|+++|.. ..+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~pv 203 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTEPL 203 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCCCE
Confidence 57899999999999999985543 55 479999998865432211 13 22 35788899999999987654 345
Q ss_pred cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
+.. +.+++|+.+.-+|.. ..|++.+.+..
T Consensus 204 l~~---~~l~~g~~i~~ig~~~~~~~El~~~~~~~ 235 (314)
T PRK06141 204 VRG---EWLKPGTHLDLVGNFTPDMRECDDEAIRR 235 (314)
T ss_pred ecH---HHcCCCCEEEeeCCCCcccccCCHHHHhc
Confidence 654 457999965556653 24677555443
No 182
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.95 E-value=0.0025 Score=71.77 Aligned_cols=91 Identities=10% Similarity=0.144 Sum_probs=66.8
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh-hcC-ceecC---HHHHhccCcEEEEcCCCCC-Cc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS-MEG-YEVTT---MEEAAKEGGIFVTTTGCKD-II 417 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~-~~G-~~v~~---Leell~~aDiIi~atgt~~-lI 417 (718)
.+.|++|.|||.|.+|+.+++.|...|+ +++++.+++.++.... ..+ ..+.+ +.+++.++|+||.+|+..+ +|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi 257 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIV 257 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeE
Confidence 4789999999999999999999999996 7999988876543221 112 23333 4566889999999987654 57
Q ss_pred CHHHHhcCCCCeEEEEcCCC
Q psy7896 418 RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRg 437 (718)
+.+.+. ...-++|+.+-.
T Consensus 258 ~~~~~~--~~~~~~iDLavP 275 (414)
T PRK13940 258 TCKYVG--DKPRVFIDISIP 275 (414)
T ss_pred CHHHhC--CCCeEEEEeCCC
Confidence 766543 234678888764
No 183
>PRK07680 late competence protein ComER; Validated
Probab=96.95 E-value=0.0018 Score=68.35 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=65.5
Q ss_pred EEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHHHHhh--cCcee-cCHHHHhccCcEEEEcCCCCCCcC--HH
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINALQASM--EGYEV-TTMEEAAKEGGIFVTTTGCKDIIR--GE 420 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a~~--~G~~v-~~Leell~~aDiIi~atgt~~lI~--~e 420 (718)
+|+|||+|++|..+++.+...| .+|.++++++.+...... .|... .+..++++.+|+|+++.....+.. ++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~ 81 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQK 81 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHHH
Confidence 6999999999999999998877 379999888754322221 15543 467788899999999864332211 12
Q ss_pred HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
....++++.+++.+.-+ +..+.|..
T Consensus 82 l~~~l~~~~~iis~~ag---~~~~~L~~ 106 (273)
T PRK07680 82 LAPHLTDEHCLVSITSP---ISVEQLET 106 (273)
T ss_pred HHhhcCCCCEEEEECCC---CCHHHHHH
Confidence 22356778889988754 34555554
No 184
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.95 E-value=0.0024 Score=68.02 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=61.6
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------------------------hcCce-ecCHHHHhc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------------------------MEGYE-VTTMEEAAK 402 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------------------------~~G~~-v~~Leell~ 402 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+. ..... ..+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998875321110 01222 346888899
Q ss_pred cCcEEEEcCCCC----CCcCHHHHhcCCCCeEEE-EcCC
Q psy7896 403 EGGIFVTTTGCK----DIIRGEHFLQMRDDAIVC-NIGH 436 (718)
Q Consensus 403 ~aDiIi~atgt~----~lI~~e~l~~MK~gAiLI-N~GR 436 (718)
.+|+|+.+..+. .-+-++....++++++|+ |++.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc
Confidence 999999985532 112223345678888884 5544
No 185
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.93 E-value=0.0033 Score=71.69 Aligned_cols=37 Identities=35% Similarity=0.511 Sum_probs=34.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 303 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~ 303 (718)
..|++++|||.|++|+.+|..|+.+|..|+++|..+.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4789999999999999999999999999999997763
No 186
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.91 E-value=0.0022 Score=72.14 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=62.2
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-ee--cCHHHHh---------------ccCcEEEEc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EV--TTMEEAA---------------KEGGIFVTT 410 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v--~~Leell---------------~~aDiIi~a 410 (718)
++|+|||+|.+|..+|..|...|.+|+++|+++.+... ...|. .+ ..+++++ +.+|+++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 68999999999999999999999999999998865432 22221 11 1344442 379999998
Q ss_pred CCCC----------CCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896 411 TGCK----------DII--RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 411 tgt~----------~lI--~~e~l~~MK~gAiLIN~GRg 437 (718)
.++. .+. -......+++|+++|+.+-.
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 6653 121 12334668999999998764
No 187
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.90 E-value=0.0027 Score=68.30 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=50.5
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcCc--------------eecCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEGY--------------EVTTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G~--------------~v~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+ ...|. ...++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999887532211 12231 23578889999
Q ss_pred CcEEEEcCCC
Q psy7896 404 GGIFVTTTGC 413 (718)
Q Consensus 404 aDiIi~atgt 413 (718)
+|+|+.+...
T Consensus 83 ad~Vi~avpe 92 (308)
T PRK06129 83 ADYVQESAPE 92 (308)
T ss_pred CCEEEECCcC
Confidence 9999998654
No 188
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.89 E-value=0.0027 Score=73.04 Aligned_cols=88 Identities=22% Similarity=0.189 Sum_probs=60.9
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------------------hcC-ce-ecCHHHHhccCcEE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------------------MEG-YE-VTTMEEAAKEGGIF 407 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------------------~~G-~~-v~~Leell~~aDiI 407 (718)
++|+|||.|.+|..+|..+..-|.+|+++|++|....... ..| .. ..++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999999876431110 112 22 34788999999999
Q ss_pred EEcCCCCC----CcCHHHHhcCCCCeEEEEcCC
Q psy7896 408 VTTTGCKD----IIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 408 i~atgt~~----lI~~e~l~~MK~gAiLIN~GR 436 (718)
+.+....- .+-.+.-+.++++++|+....
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTs 117 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTS 117 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 98754431 111222245688876654443
No 189
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.87 E-value=0.0038 Score=67.73 Aligned_cols=98 Identities=22% Similarity=0.246 Sum_probs=59.6
Q ss_pred CcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHH---Hhhc-Cce---ecCHHHHhccCcEEEEcCCCCC---
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQ---ASME-GYE---VTTMEEAAKEGGIFVTTTGCKD--- 415 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~---a~~~-G~~---v~~Leell~~aDiIi~atgt~~--- 415 (718)
-++++|||.|..|+.-++.+.. ++. +|.++++++.++.. .... |+. +.+.++++++||+|+++|....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P 207 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP 207 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence 4699999999999999887754 666 79999998864321 1122 443 3479999999999999876544
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
+++.+ .+|+|+.++.+|.. ..|+|.+.+..
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~~~~El~~~~~~~ 240 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTPGMRELDDELLKR 240 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SSTTBESB-HHHHHC
T ss_pred cccHH---HcCCCcEEEEecCCCCchhhcCHHHhcc
Confidence 67754 67999999999974 25777665554
No 190
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.86 E-value=0.0027 Score=71.93 Aligned_cols=89 Identities=18% Similarity=0.333 Sum_probs=62.3
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEE--------EecCCccH-----HHHh-------------h-cCceec
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV--------TEIDPINA-----LQAS-------------M-EGYEVT 395 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv--------~d~dp~~a-----l~a~-------------~-~G~~v~ 395 (718)
|.++.|+||.|.|+|++|+.+|+.|..+|++|++ +|.+-... +... . .|.+..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 6789999999999999999999999999999998 77332221 1000 0 133444
Q ss_pred CHHHHhc-cCcEEEEcCCCCCCcCHHHHhcC-CCCeEEE
Q psy7896 396 TMEEAAK-EGGIFVTTTGCKDIIRGEHFLQM-RDDAIVC 432 (718)
Q Consensus 396 ~Leell~-~aDiIi~atgt~~lI~~e~l~~M-K~gAiLI 432 (718)
+-++++. .|||++.|. ..+.|+.+...++ +.++.+|
T Consensus 303 ~~~~~~~~~cDVliPcA-l~n~I~~~na~~l~~~~ak~V 340 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-TQNELNGEDADKLIKNGVLCV 340 (445)
T ss_pred CCccceeccccEEeecc-ccccCCHHHHHHHHHcCCeEE
Confidence 4555543 699998874 3368999888888 3345444
No 191
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.85 E-value=0.0033 Score=67.33 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=60.4
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-----------HhhcCc--------------eecCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-----------ASMEGY--------------EVTTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-----------a~~~G~--------------~v~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+...|.+|+++|++|..... ....|. ...++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999998864322 122221 13356 55799
Q ss_pred CcEEEEcCCC----CCCcCHHHHhcC--CCCeEEEEcCCC
Q psy7896 404 GGIFVTTTGC----KDIIRGEHFLQM--RDDAIVCNIGHF 437 (718)
Q Consensus 404 aDiIi~atgt----~~lI~~e~l~~M--K~gAiLIN~GRg 437 (718)
+|+|+.+... +..+-. .++.+ +++++++.....
T Consensus 85 ~d~ViEav~E~~~~K~~l~~-~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFA-ELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred CCEEEEecccCHHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence 9999987432 111221 44555 789988876553
No 192
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.84 E-value=0.0028 Score=71.92 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=65.0
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecC-----C--c--cHH--------------HHhhc---Ccee
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEID-----P--I--NAL--------------QASME---GYEV 394 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~d-----p--~--~al--------------~a~~~---G~~v 394 (718)
.+.+++||||.|-|+|++|+.+|+.|..+|++|+ +.|.+ | + ..+ ..... |.++
T Consensus 231 ~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~ 310 (454)
T PTZ00079 231 LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY 310 (454)
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence 3778999999999999999999999999999998 66655 1 1 011 00001 2333
Q ss_pred cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcC-CCCeEEEEcCC
Q psy7896 395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQM-RDDAIVCNIGH 436 (718)
Q Consensus 395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~M-K~gAiLIN~GR 436 (718)
.+-++++ -.|||++.|. +.+.|+.+....+ +.++.+|-=|-
T Consensus 311 ~~~~~~~~~~cDI~iPcA-~~n~I~~~~a~~l~~~~ak~V~EgA 353 (454)
T PTZ00079 311 VPGKKPWEVPCDIAFPCA-TQNEINLEDAKLLIKNGCKLVAEGA 353 (454)
T ss_pred eCCcCcccCCccEEEecc-ccccCCHHHHHHHHHcCCeEEEecC
Confidence 3444444 3699998874 3468999888766 66776665443
No 193
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.84 E-value=0.037 Score=59.71 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=69.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEc-CCC-----------
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTT-TGC----------- 413 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~a-tgt----------- 413 (718)
.|++++|||.=.=-..++++|...|++|.++.-+. ... ...|.... +.+++++++|+++.- +++
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~-~~~--~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ-LDH--GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc-ccc--ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 37899999998888999999999999999864321 111 12366665 568889999999864 221
Q ss_pred --CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccce
Q psy7896 414 --KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEK 453 (718)
Q Consensus 414 --~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~ 453 (718)
.--++.+.++.||++..++ +|.++..++ +.+.+.++..
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~ 117 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKL 117 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeE
Confidence 1124678899999998555 577764444 4444444433
No 194
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.84 E-value=0.0036 Score=66.69 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=63.6
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH--------------hhcCc-------------ee-cCHHHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA--------------SMEGY-------------EV-TTMEEA 400 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a--------------~~~G~-------------~v-~~Leel 400 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+ ...|. .. .++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 689999999999999999999999999999887542111 00111 12 234 56
Q ss_pred hccCcEEEEcCCCCCCcCHH----HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 401 AKEGGIFVTTTGCKDIIRGE----HFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 401 l~~aDiIi~atgt~~lI~~e----~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
++++|+|+.+....--+..+ .-+.++++++++....+ +....+.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg---~~~~~la~ 131 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG---IMIAEIAT 131 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC---CCHHHHHh
Confidence 78999999986543211222 22456888988876554 34444543
No 195
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.82 E-value=0.0033 Score=67.41 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=59.2
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----cC--------------ce-ecCHHHHhccCcEEE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----EG--------------YE-VTTMEEAAKEGGIFV 408 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----~G--------------~~-v~~Leell~~aDiIi 408 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++........ .| .. ..+.+++++++|+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 68999999999999999999999999999987753211110 01 12 246778899999999
Q ss_pred EcCCCCCC----cCHHHHhcCCCCeEEE-EcCC
Q psy7896 409 TTTGCKDI----IRGEHFLQMRDDAIVC-NIGH 436 (718)
Q Consensus 409 ~atgt~~l----I~~e~l~~MK~gAiLI-N~GR 436 (718)
.+....-- +-.+.-...+++++++ |++.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg 117 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG 117 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 98654321 1112223457777764 5543
No 196
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.81 E-value=0.0073 Score=64.72 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=50.3
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh---c---Ccee---cCHHHHhccCcEEEEcCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM---E---GYEV---TTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~---~---G~~v---~~Leell~~aDiIi~atg 412 (718)
.+.+|+|.|+|.|.+|++++..|...|+ +|+++++++.++..... . ...+ .++.+.++++|+||.+|.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence 4578999999999999999999999998 79999998765432111 1 1122 234556788999998864
No 197
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.81 E-value=0.0073 Score=65.86 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=72.2
Q ss_pred cCcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHHHh-----hcCcee---cCHHHHhccCcEEEEcCCC-CC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQAS-----MEGYEV---TTMEEAAKEGGIFVTTTGC-KD 415 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~a~-----~~G~~v---~~Leell~~aDiIi~atgt-~~ 415 (718)
..++++|||.|..|+..++.+. .++. +|.++++++.++.... ..|+.+ .+++++++++|+|+++|.. ..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p 207 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP 207 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence 4689999999999999999886 4775 6999999886543211 114433 4688999999999998764 34
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
+|..+ .+|+|+.+..+|.. ..|+|.+.+..
T Consensus 208 ~i~~~---~l~~g~~i~~vg~~~p~~rEld~~~l~~ 240 (326)
T TIGR02992 208 ILHAE---WLEPGQHVTAMGSDAEHKNEIDPAVIAK 240 (326)
T ss_pred EecHH---HcCCCcEEEeeCCCCCCceecCHHHHhc
Confidence 56654 47899998888852 35677666554
No 198
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.80 E-value=0.0032 Score=72.00 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=63.5
Q ss_pred EEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc---C--c-eecCHHHHh---ccCcEEEEcCCC----CCCc
Q psy7896 351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---G--Y-EVTTMEEAA---KEGGIFVTTTGC----KDII 417 (718)
Q Consensus 351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~---G--~-~v~~Leell---~~aDiIi~atgt----~~lI 417 (718)
|||||+|.+|..+|+.+..-|.+|+++|+++.+..+.... | . ...++++++ +.+|+|+++... ..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 8999999999999999999999999999988654333222 2 2 234677766 468988876332 2334
Q ss_pred CHHHHhcCCCCeEEEEcCCC
Q psy7896 418 RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRg 437 (718)
.+.+..+++|.++|++|..
T Consensus 82 -~~l~~~L~~g~iIID~gns 100 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNS 100 (467)
T ss_pred -HHHHhhCCCCCEEEECCCc
Confidence 3455678999999999875
No 199
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.80 E-value=0.0019 Score=74.60 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=62.4
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------ce-ecCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YE-VTTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~-v~~Leell~~ 403 (718)
++|||||.|.+|..+|+.+..-|.+|+++|+++.....+ ...| .. ..++++ ++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 689999999999999999999999999999988643221 2234 12 245655 569
Q ss_pred CcEEEEcCCC----CCCcCHHHHhcCCCCeEEE-EcCCCC
Q psy7896 404 GGIFVTTTGC----KDIIRGEHFLQMRDDAIVC-NIGHFD 438 (718)
Q Consensus 404 aDiIi~atgt----~~lI~~e~l~~MK~gAiLI-N~GRgd 438 (718)
||+|+.+... +..+-.+.-..++++++++ |++..+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~ 126 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 9999987433 2222222224468999994 998754
No 200
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.79 E-value=0.0033 Score=61.69 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=57.5
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--cCHH-HHhccCcEEEEcCCCCCCcCH
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--TTME-EAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--~~Le-ell~~aDiIi~atgt~~lI~~ 419 (718)
..+|+|++|.|||.|++|...++.|...|++|++++++....+... ....+ ..++ +-+..+|+|+.+|++.. +|.
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l-~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~ 85 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKEL-PYITWKQKTFSNDDIKDAHLIYAATNQHA-VNM 85 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhc-cCcEEEecccChhcCCCceEEEECCCCHH-HHH
Confidence 3578999999999999999999999999999999964433333221 12221 1222 23677899888887643 333
Q ss_pred HHHhcCCCCeEEEEc
Q psy7896 420 EHFLQMRDDAIVCNI 434 (718)
Q Consensus 420 e~l~~MK~gAiLIN~ 434 (718)
.....-+.. .++|+
T Consensus 86 ~i~~~a~~~-~~vn~ 99 (157)
T PRK06719 86 MVKQAAHDF-QWVNV 99 (157)
T ss_pred HHHHHHHHC-CcEEE
Confidence 222222333 35664
No 201
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.78 E-value=0.0039 Score=71.77 Aligned_cols=38 Identities=29% Similarity=0.192 Sum_probs=33.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHh--cCCeEEEeecCchh
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRL--FGSRVIVTEIDPIN 304 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra--~Gv~VtV~D~dp~r 304 (718)
..+++|+|||.||.|+.+|+.|++ .|+.|+++|..|..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 467899999999999999999987 89999999987743
No 202
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.75 E-value=0.0033 Score=71.09 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=63.8
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-----------------eecCHHHHhccCcEEEEc
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-----------------EVTTMEEAAKEGGIFVTT 410 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-----------------~v~~Leell~~aDiIi~a 410 (718)
-++|+|||+|.+|..+|..+.. |.+|+++|+++.+.... ..|. ...+-.+.+++||+++++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l-~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILEL-KNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHH-HCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 3789999999999999999876 79999999998653322 2332 233334578899999988
Q ss_pred CCCC----------CCcC--HHHHhcCCCCeEEEEcCCCC
Q psy7896 411 TGCK----------DIIR--GEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 411 tgt~----------~lI~--~e~l~~MK~gAiLIN~GRgd 438 (718)
-+|. .+.. ....+.+++|.++|+.+-..
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 5543 1221 22346789999999987653
No 203
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.74 E-value=0.04 Score=59.82 Aligned_cols=169 Identities=17% Similarity=0.093 Sum_probs=111.1
Q ss_pred cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcc
Q psy7896 250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGV 329 (718)
Q Consensus 250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv 329 (718)
+-+||+.|.+.--.. . -.+.|+.. +-.-.+...++.-+++|++...+...=.|+.++-|.+-+
T Consensus 83 ~kgEsl~Dt~~~l~~-~---~D~iv~R~-~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e------------ 145 (304)
T PRK00779 83 GRGEPIEDTARVLSR-Y---VDAIMIRT-FEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYE------------ 145 (304)
T ss_pred CCCcCHHHHHHHHHH-h---CCEEEEcC-CChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHH------------
Confidence 457888876653211 1 12333332 222233445566678998887655566677777665532
Q ss_pred cccccchhhhhhhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccH---H-H--HhhcCce---ecCHHH
Q psy7896 330 KLTKLTEDQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA---L-Q--ASMEGYE---VTTMEE 399 (718)
Q Consensus 330 ~~~~~~~~~~~~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~a---l-~--a~~~G~~---v~~Lee 399 (718)
..| .+.|++|+++|- +++.+..+..+..+|++|.++-+..... . + +...|.. ..++++
T Consensus 146 -----------~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~ 213 (304)
T PRK00779 146 -----------HRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKE 213 (304)
T ss_pred -----------HhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHH
Confidence 123 478999999998 7899999999999999999985432211 1 0 2223432 358999
Q ss_pred HhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHh
Q psy7896 400 AAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLD 447 (718)
Q Consensus 400 ll~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~ 447 (718)
+++.+|+|.+.. + ...-++.+.++.+|+++++.-++- -++|++.+-+.
T Consensus 214 a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~ 279 (304)
T PRK00779 214 AVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVID 279 (304)
T ss_pred HhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHHHhC
Confidence 999999998741 1 234588899999999999999876 23577765444
No 204
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0021 Score=66.59 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=51.7
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCce--------ecCHHHH-hccCcEEEEcCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYE--------VTTMEEA-AKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~--------v~~Leel-l~~aDiIi~atgt~ 414 (718)
|++.|||+|++|+.+|+.|...|.+|+++|.|+.+..+... .+.. ...|.++ +.++|+++.+|++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 57999999999999999999999999999999977555222 2222 2246666 78899999888763
No 205
>PRK06046 alanine dehydrogenase; Validated
Probab=96.73 E-value=0.0081 Score=65.49 Aligned_cols=97 Identities=24% Similarity=0.301 Sum_probs=69.8
Q ss_pred CcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHHHhh-----cCce---ecCHHHHhccCcEEEEcCCCC-CC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQASM-----EGYE---VTTMEEAAKEGGIFVTTTGCK-DI 416 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~a~~-----~G~~---v~~Leell~~aDiIi~atgt~-~l 416 (718)
-++|+|||.|.+|+..++.+. -.+. +|.++++++.+..+... .++. +.+.+++++ +|+|+++|.+. -+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P~ 207 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKPV 207 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCcE
Confidence 579999999999999998776 3566 57778888765332111 1432 347889887 99999987653 45
Q ss_pred cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
+..+ .+|+|+.+..+|.. ..|+|.+.+..
T Consensus 208 ~~~~---~l~~g~hV~~iGs~~p~~~El~~~~~~~ 239 (326)
T PRK06046 208 VKAE---WIKEGTHINAIGADAPGKQELDPEILLR 239 (326)
T ss_pred ecHH---HcCCCCEEEecCCCCCccccCCHHHHhC
Confidence 6654 56999999999963 36788776654
No 206
>PLN02527 aspartate carbamoyltransferase
Probab=96.70 E-value=0.049 Score=59.20 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=108.3
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHL 327 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~l 327 (718)
.|.+||+.|...--... -.+.|+....-+. +...++.-.++|++.-. +...=.|+.++-|.+.+
T Consensus 80 ~~kgEs~~Dta~vls~y----~D~iviR~~~~~~-~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e---------- 144 (306)
T PLN02527 80 AAKGETLEDTIRTVEGY----SDIIVLRHFESGA-ARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQR---------- 144 (306)
T ss_pred cCCCcCHHHHHHHHHHh----CcEEEEECCChhH-HHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHH----------
Confidence 45579988765532221 2244555433333 33455666788888733 34555566666665422
Q ss_pred cccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhC-CCEEEEEecCCcc---HH--HHhhcCce---ec
Q psy7896 328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLF-GSRVIVTEIDPIN---AL--QASMEGYE---VT 395 (718)
Q Consensus 328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~f-Ga~Viv~d~dp~~---al--~a~~~G~~---v~ 395 (718)
..| .+.|++|++||-+ ++....+..+..| |++|.++-+.... .. .+...|.. ..
T Consensus 145 -------------~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 145 -------------EIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred -------------HhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 123 4889999999976 6889999988887 9999987543221 11 11223433 35
Q ss_pred CHHHHhccCcEEEEcCC----------------CCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896 396 TMEEAAKEGGIFVTTTG----------------CKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD 447 (718)
Q Consensus 396 ~Leell~~aDiIi~atg----------------t~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~ 447 (718)
+++++++.+|+|.+... ....|+.+.++..|+++++.-+.--..|++.+.+.
T Consensus 211 d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~~V~d 278 (306)
T PLN02527 211 DLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDS 278 (306)
T ss_pred CHHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccHHHhC
Confidence 89999999999998421 12458888888999999998877544577755443
No 207
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.70 E-value=0.041 Score=59.75 Aligned_cols=185 Identities=18% Similarity=0.126 Sum_probs=119.1
Q ss_pred ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896 229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 308 (718)
Q Consensus 229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A 308 (718)
|+--+++.+.+.. ..+-+||+.|.+.-.... -.+.|+.. +-.-.+...++.-+++|++...+...=.|+
T Consensus 64 LGg~~i~l~~~~s------s~~kgEsl~Dt~~vls~y----~D~iv~R~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQa 132 (304)
T TIGR00658 64 LGGHPLYLNPNDL------QLGRGESIKDTARVLSRY----VDGIMARV-YKHEDVEELAKYASVPVINGLTDLFHPCQA 132 (304)
T ss_pred cCCCEEEeCCccc------cCCCCCCHHHHHHHHHHh----CCEEEEEC-CChHHHHHHHHhCCCCEEECCCCCCChHHH
Confidence 4555666643322 124479988876532221 22344443 333334455666788999887666666677
Q ss_pred hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccH---
Q psy7896 309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA--- 384 (718)
Q Consensus 309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~a--- 384 (718)
.++-|.+.+ ..| .+.|.+|+++|- +++.+..+..+..||++|.++-+.....
T Consensus 133 L~Dl~Ti~e-----------------------~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~ 188 (304)
T TIGR00658 133 LADLLTIIE-----------------------HFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDAD 188 (304)
T ss_pred HHHHHHHHH-----------------------HhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHH
Confidence 777665432 123 388999999998 6789999999999999999985432211
Q ss_pred -H-H----HhhcCc--e-ecCHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--
Q psy7896 385 -L-Q----ASMEGY--E-VTTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF-- 437 (718)
Q Consensus 385 -l-~----a~~~G~--~-v~~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg-- 437 (718)
. + +...|. . ..+++++++.+|+|.+-. + ....++.+.++.+|+++++.-++-.
T Consensus 189 ~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~~r 268 (304)
T TIGR00658 189 IVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHR 268 (304)
T ss_pred HHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCCCC
Confidence 0 0 122342 2 368999999999998731 1 1236999999999999999988764
Q ss_pred CccccHHHHhc
Q psy7896 438 DCEIQVSWLDK 448 (718)
Q Consensus 438 d~Eid~~aL~~ 448 (718)
++|++.+-+..
T Consensus 269 g~Ei~~~V~d~ 279 (304)
T TIGR00658 269 GEEVTDEVIEG 279 (304)
T ss_pred CceeCHHHhCC
Confidence 35777654443
No 208
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.66 E-value=0.0045 Score=67.91 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=66.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--c-----CHHHHhccCcEEEEcCCCCCCcCH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--T-----TMEEAAKEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--~-----~Leell~~aDiIi~atgt~~lI~~ 419 (718)
.|++|+|+|+|-.|....+.++++|++|+++++++.+...+...|... . .++++-+.+|+++.+.+ ...++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~- 243 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLE- 243 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHH-
Confidence 599999999999999999999999999999999987765555555431 1 12233334888887766 44444
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
..++.+|.+..++-+|-.
T Consensus 244 ~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 244 PSLKALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHHHhcCCEEEEECCC
Confidence 567888888888887775
No 209
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.66 E-value=0.0045 Score=65.59 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=58.9
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-----------HHhhcC-------------ce-ecCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-----------QASMEG-------------YE-VTTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-----------~a~~~G-------------~~-v~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+...|.+|+++|++|.... .....| .. ..+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999998876431 111222 22 23444 4789
Q ss_pred CcEEEEcCCCCCC----cCHHHHhcCCCCeEE-EEcCC
Q psy7896 404 GGIFVTTTGCKDI----IRGEHFLQMRDDAIV-CNIGH 436 (718)
Q Consensus 404 aDiIi~atgt~~l----I~~e~l~~MK~gAiL-IN~GR 436 (718)
||+|+.+....-. +-++..+.++++++| .|++.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 9999988532111 222233467888888 44444
No 210
>KOG0409|consensus
Probab=96.66 E-value=0.0036 Score=67.29 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=56.7
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~atgt 413 (718)
.-++||.||+|+.|..++..|-..|.+|+|||++..+..+....|.++. +..|+.+.||+++++-++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~ 101 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPN 101 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCC
Confidence 4689999999999999999999999999999998766544445676654 688999999999997544
No 211
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.63 E-value=0.005 Score=71.10 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=61.9
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcCc--------------eecCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEGY--------------EVTTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G~--------------~v~~Leell~~ 403 (718)
++|+|||.|.+|..+|+.+...|.+|+++|+++.....+ ...|. ...++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 679999999999999999999999999999987643211 12231 1345654 569
Q ss_pred CcEEEEcCCCCCCcC----HHHHhcCCCCeEEE-EcCCCC
Q psy7896 404 GGIFVTTTGCKDIIR----GEHFLQMRDDAIVC-NIGHFD 438 (718)
Q Consensus 404 aDiIi~atgt~~lI~----~e~l~~MK~gAiLI-N~GRgd 438 (718)
||+|+.+-...--+. .+.-..++++++|+ |++..+
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~ 124 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC
Confidence 999998743321122 22234578899887 887753
No 212
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.62 E-value=0.0044 Score=63.45 Aligned_cols=88 Identities=24% Similarity=0.280 Sum_probs=59.5
Q ss_pred cEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--------cCc----eecCHHHHhccCcEEEEcCCCCC
Q psy7896 349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--------EGY----EVTTMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--------~G~----~v~~Leell~~aDiIi~atgt~~ 415 (718)
++|+||| .|++|+.+++.+...|.+|+++++++.+...... .|+ ...+..++++++|+|+++.....
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 8999999999999999999999888754321111 122 22366788999999999866543
Q ss_pred CcCH-HHHh-cCCCCeEEEEcCCC
Q psy7896 416 IIRG-EHFL-QMRDDAIVCNIGHF 437 (718)
Q Consensus 416 lI~~-e~l~-~MK~gAiLIN~GRg 437 (718)
+-.. +.+. .++ +.++|++.-+
T Consensus 81 ~~~~l~~l~~~l~-~~vvI~~~ng 103 (219)
T TIGR01915 81 VLKTLESLRDELS-GKLVISPVVP 103 (219)
T ss_pred HHHHHHHHHHhcc-CCEEEEeccC
Confidence 2110 1232 233 4788887655
No 213
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.61 E-value=0.044 Score=59.54 Aligned_cols=170 Identities=18% Similarity=0.133 Sum_probs=108.3
Q ss_pred cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896 250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHLG 328 (718)
Q Consensus 250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~lg 328 (718)
+.+||+-|.+.--.. -|-.++|+.. +--..+...++.-.++|++.-. +...=.|+.++-|.+.+
T Consensus 85 ~kgEs~~Dta~vls~---y~~D~iv~R~-~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e----------- 149 (305)
T PRK00856 85 SKGETLADTIRTLSA---MGADAIVIRH-PQSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIRE----------- 149 (305)
T ss_pred CCCcCHHHHHHHHHh---cCCCEEEEeC-CChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHH-----------
Confidence 567888776543211 2233444442 2222333445556789988743 34555566666655421
Q ss_pred ccccccchhhhhhhcccccCcEEEEEec---ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCc
Q psy7896 329 VKLTKLTEDQAKYLDIMLAGKVAVVAGY---GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405 (718)
Q Consensus 329 v~~~~~~~~~~~~~g~eL~GktVGIIG~---G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aD 405 (718)
..| .++|++|++||- +++....+..+..||++|.++-+....... ...-....+++++++.+|
T Consensus 150 ------------~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~~~~~~~d~~ea~~~aD 215 (305)
T PRK00856 150 ------------EFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MPEYGVHTDLDEVIEDAD 215 (305)
T ss_pred ------------HhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-ccceEEECCHHHHhCCCC
Confidence 123 488999999998 589999999999999999998543322111 111123468999999999
Q ss_pred EEEEcCC-----------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896 406 IFVTTTG-----------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK 448 (718)
Q Consensus 406 iIi~atg-----------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~ 448 (718)
+|.+... ....++++.++..|+++++.-+.- -..|++.+-+..
T Consensus 216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~V~d~ 277 (305)
T PRK00856 216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADG 277 (305)
T ss_pred EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHHHhCC
Confidence 9987521 123588999999999999988854 235777554443
No 214
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.60 E-value=0.048 Score=59.14 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=109.4
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHL 327 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~l 327 (718)
.|.+||+-|...--.. . -.++|+.-.. -..+...++.-+++|++.-. +...=.|++++-|.+.+
T Consensus 79 ~~kgEsi~Dta~vls~-y---~D~iviR~~~-~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e---------- 143 (301)
T TIGR00670 79 VAKGETLADTIKTLSG-Y---SDAIVIRHPL-EGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYE---------- 143 (301)
T ss_pred CCCCcCHHHHHHHHHH-h---CCEEEEECCc-hhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHH----------
Confidence 3567888776543222 1 2344444332 22334445666788888743 33445566666655421
Q ss_pred cccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhCCCEEEEEecCCcc---HH--HHhhcCce---ecC
Q psy7896 328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLFGSRVIVTEIDPIN---AL--QASMEGYE---VTT 396 (718)
Q Consensus 328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~fGa~Viv~d~dp~~---al--~a~~~G~~---v~~ 396 (718)
..| .++|++|+++|-| ++.+..+..+..||++|.++-+.... .. .+...|.. ..+
T Consensus 144 -------------~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 144 -------------EFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES 209 (301)
T ss_pred -------------HhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence 123 4889999999995 99999999999999999998543321 11 11223543 368
Q ss_pred HHHHhccCcEEEEcCC---------------CCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 397 MEEAAKEGGIFVTTTG---------------CKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 397 Leell~~aDiIi~atg---------------t~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
++++++.+|+|.+..- ...-|+.+.++..|+++++.-+.--+.|++.+-+..
T Consensus 210 ~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~V~d~ 276 (301)
T TIGR00670 210 LEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPSVDDT 276 (301)
T ss_pred HHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHHHhCC
Confidence 9999999999987421 123478888999999999887765335776554443
No 215
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.57 E-value=0.0082 Score=63.52 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=57.8
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------------cCHHHHhccCcEEEEcCCCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------------TTMEEAAKEGGIFVTTTGCKDI 416 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------------~~Leell~~aDiIi~atgt~~l 416 (718)
++|+|||.|.+|..+|..|...|.+|+++++++.........|..+ .+..++ +.+|+|++++.+..+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~ 79 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQL 79 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccH
Confidence 3699999999999999999999999999988664322222234321 234454 889999998776543
Q ss_pred cCHHHHh----cCCCCeEEEEcCCC
Q psy7896 417 IRGEHFL----QMRDDAIVCNIGHF 437 (718)
Q Consensus 417 I~~e~l~----~MK~gAiLIN~GRg 437 (718)
.+.++ .+.++..++....|
T Consensus 80 --~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 80 --PAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred --HHHHHHHhhhcCCCCEEEEecCC
Confidence 22333 34556666655443
No 216
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.56 E-value=0.0063 Score=65.78 Aligned_cols=91 Identities=16% Similarity=0.279 Sum_probs=67.6
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee-c-----CHHHHhc---cCcEEEEcCCCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV-T-----TMEEAAK---EGGIFVTTTGCKD 415 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v-~-----~Leell~---~aDiIi~atgt~~ 415 (718)
..|++|.|+|.|.||...++.++.+|+ +|++++.++.+...+...|... . ++.++.+ ..|+++-++|...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~ 247 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS 247 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence 368999999999999999999999999 5888887776544444445432 1 2344433 2699999888643
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg 437 (718)
.+ ...++.++++..++.+|..
T Consensus 248 ~~-~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 248 SI-NTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred HH-HHHHHHhhcCCEEEEEccC
Confidence 33 3578899999999999864
No 217
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.55 E-value=0.0077 Score=67.37 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=60.4
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh----------------cCcee---cCHHHHhccCcEEEE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM----------------EGYEV---TTMEEAAKEGGIFVT 409 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~----------------~G~~v---~~Leell~~aDiIi~ 409 (718)
++|+|||.|.+|..+|..+. .|.+|+++|+++.+...... .+... .+..++++++|+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 36999999999999997776 59999999998865322111 11112 235678899999999
Q ss_pred cCCCC-----CCcCH-------HHHhcCCCCeEEEEcCCC
Q psy7896 410 TTGCK-----DIIRG-------EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 410 atgt~-----~lI~~-------e~l~~MK~gAiLIN~GRg 437 (718)
+.++. +..+- +.+..+++|.++|+.+-.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv 119 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTV 119 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 86653 12221 223446889999988764
No 218
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.51 E-value=0.023 Score=59.82 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=45.3
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCC----EEEEEecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGS----RVIVTEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa----~Viv~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atgt 413 (718)
+.++|+|||+|++|.++++.+..-|. +++++++++.+ .+. ...+..++++++|+|++++..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavkp 67 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVKP 67 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeCH
Confidence 34689999999999999999987662 48888765432 122 234667788899999998554
No 219
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.50 E-value=0.0059 Score=67.04 Aligned_cols=91 Identities=23% Similarity=0.372 Sum_probs=67.6
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh-cCceec-C-HH--------HHh--ccCcEEEEcCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM-EGYEVT-T-ME--------EAA--KEGGIFVTTTG 412 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~-~G~~v~-~-Le--------ell--~~aDiIi~atg 412 (718)
.+.+|.|+|.|.||...++.++.+|+ +|++.|.++.+...|.. .|.... + .+ ++- ..+|+++.++|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 34499999999999999999999998 67788988877655543 454422 1 11 222 24899999999
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
+...+. +.++..+++..++.+|-..
T Consensus 248 ~~~~~~-~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 SPPALD-QALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CHHHHH-HHHHHhcCCCEEEEEeccC
Confidence 654333 6788999999999998764
No 220
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.47 E-value=0.0093 Score=63.09 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=61.9
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh----hcC-ceecCHHHH-hccCcEEEEcCCCC--CC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS----MEG-YEVTTMEEA-AKEGGIFVTTTGCK--DI 416 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~----~~G-~~v~~Leel-l~~aDiIi~atgt~--~l 416 (718)
...+|+++|+|.|.+|+.++..+...|++|+++++++.+..+.. ..| ....++++. +.++|+|+.+|+.. .-
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN 193 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence 45689999999999999999999999999999998875432211 112 223345543 35799999887641 11
Q ss_pred cCH-H-HHhcCCCCeEEEEcCCCC
Q psy7896 417 IRG-E-HFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 417 I~~-e-~l~~MK~gAiLIN~GRgd 438 (718)
+.. . ..+.++++.+++++...+
T Consensus 194 ~~~~~~~~~~l~~~~~v~D~~y~p 217 (270)
T TIGR00507 194 IDEPPVPAEKLKEGMVVYDMVYNP 217 (270)
T ss_pred CCCCCCCHHHcCCCCEEEEeccCC
Confidence 110 0 134567777777776543
No 221
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.46 E-value=0.0037 Score=62.49 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=57.2
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH------HH-----hhcC-------------ce-ecCHHHHhccC
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL------QA-----SMEG-------------YE-VTTMEEAAKEG 404 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al------~a-----~~~G-------------~~-v~~Leell~~a 404 (718)
+|+|||.|.+|+.+|..+...|.+|+++|+++.... +. ...| .. ..+++++. .+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999876321 00 0111 12 34677777 99
Q ss_pred cEEEEcCCCCC----CcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 405 GIFVTTTGCKD----IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 405 DiIi~atgt~~----lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
|+|+-+....- -+-++.-+.++++++|.....+ +.+..|..
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs---l~i~~la~ 124 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS---LSISELAA 124 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS---S-HHHHHT
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC---CCHHHHHh
Confidence 99998743211 1222233456788877655442 44555554
No 222
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.46 E-value=0.013 Score=63.90 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=73.1
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHH--H--hhcCcee---cCHHHHhccCcEEEEcCCC-CCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQ--A--SMEGYEV---TTMEEAAKEGGIFVTTTGC-KDI 416 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~--a--~~~G~~v---~~Leell~~aDiIi~atgt-~~l 416 (718)
.-++++|||.|..++.-++.+.. +.. +|.++++++.++.. . ...++.+ .+.+++++.||||+++|.. .-+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P~ 206 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREPL 206 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCce
Confidence 45899999999999998887653 333 79999998876432 1 1124443 4689999999999998654 446
Q ss_pred cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhcc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDKN 449 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~~ 449 (718)
|+.+ .+|+|+.+.++|.. ..|+|.+.+...
T Consensus 207 ~~~~---~l~~G~hi~~iGs~~p~~~Eld~~~l~~a 239 (315)
T PRK06823 207 LQAE---DIQPGTHITAVGADSPGKQELDAELVARA 239 (315)
T ss_pred eCHH---HcCCCcEEEecCCCCcccccCCHHHHhhC
Confidence 6654 56899999999964 367887766653
No 223
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.45 E-value=0.065 Score=58.95 Aligned_cols=161 Identities=17% Similarity=0.080 Sum_probs=104.3
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG 328 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg 328 (718)
.+.+||+.|...--.. + -.+.|+. .+---.+..+++..+++|++...+...=.|+.++-|.+.+
T Consensus 85 ~~kgEsl~DTarvls~-y---~D~iv~R-~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e----------- 148 (334)
T PRK01713 85 IGHKESMKDTARVLGR-M---YDAIEYR-GFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIE----------- 148 (334)
T ss_pred CCCCcCHHHHHHHHHH-h---CCEEEEE-cCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence 3557898776543211 1 2233343 3333334445566778999887666666677777665421
Q ss_pred ccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCccH---H-----H-HhhcCc--e-e
Q psy7896 329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPINA---L-----Q-ASMEGY--E-V 394 (718)
Q Consensus 329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~a---l-----~-a~~~G~--~-v 394 (718)
..|..+.|++|++||-+ ++.+..+..+..||++|.++-+..... . + +...|. . .
T Consensus 149 ------------~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~ 216 (334)
T PRK01713 149 ------------NCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVT 216 (334)
T ss_pred ------------HcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 12335889999999987 578888999999999999975432211 0 1 112342 2 3
Q ss_pred cCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896 395 TTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGHF 437 (718)
Q Consensus 395 ~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GRg 437 (718)
.+++++++++|+|.+.. + ....|+.+.++.. |+++++.-+.-.
T Consensus 217 ~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~ 277 (334)
T PRK01713 217 DDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPA 277 (334)
T ss_pred cCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCC
Confidence 68999999999998731 1 1234888888886 799999988754
No 224
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.36 E-value=0.011 Score=68.77 Aligned_cols=37 Identities=35% Similarity=0.428 Sum_probs=33.8
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp 302 (718)
...|++|+|+|.|++|+.+|+.|+.+|+.|+++|..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999999654
No 225
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.34 E-value=0.0079 Score=65.24 Aligned_cols=91 Identities=23% Similarity=0.188 Sum_probs=65.8
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEec---CCccHHHHhhcCceecC-----HHH--HhccCcEEEEcCCCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI---DPINALQASMEGYEVTT-----MEE--AAKEGGIFVTTTGCKD 415 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~---dp~~al~a~~~G~~v~~-----Lee--ll~~aDiIi~atgt~~ 415 (718)
..|++|.|+|.|.||..+++.++.+|++|+++++ ++.+...+...|..... ..+ .....|+++.++|...
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 250 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP 250 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH
Confidence 3689999999999999999999999999999886 34333223334544321 111 1234799999988644
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg 437 (718)
.+ .+.++.|+++..++.+|..
T Consensus 251 ~~-~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 251 LA-FEALPALAPNGVVILFGVP 271 (355)
T ss_pred HH-HHHHHHccCCcEEEEEecC
Confidence 33 4678999999999998864
No 226
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.32 E-value=0.0074 Score=63.92 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=48.2
Q ss_pred cEEEEEecChhHHHHHHHHHhC--CCE-EEEEecCCccHHHHh-hcCc-eecCHHHHhccCcEEEEcCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLF--GSR-VIVTEIDPINALQAS-MEGY-EVTTMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~f--Ga~-Viv~d~dp~~al~a~-~~G~-~v~~Leell~~aDiIi~atgt~ 414 (718)
.+|||||+|+||+.+++.+... +.+ +.++|+++.+..... ..|. .+.++++++.++|+|+.+++..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH
Confidence 4799999999999999988765 566 446888775543322 2233 3457999999999999987653
No 227
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.32 E-value=0.0064 Score=64.97 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=63.2
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCceecCHHH-HhccCcEEEEcCCCCCCcCHHHHh
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYEVTTMEE-AAKEGGIFVTTTGCKDIIRGEHFL 423 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~v~~Lee-ll~~aDiIi~atgt~~lI~~e~l~ 423 (718)
..|++|.|+|.|.||...++.++.+|++ |++++.++.+...+... .+.+-++ .-...|+++-++|....++ ..++
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--~~i~~~~~~~~g~Dvvid~~G~~~~~~-~~~~ 219 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--EVLDPEKDPRRDYRAIYDASGDPSLID-TLVR 219 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--cccChhhccCCCCCEEEECCCCHHHHH-HHHH
Confidence 3688999999999999999999999998 45566665443322221 2222222 1235799999998754443 5789
Q ss_pred cCCCCeEEEEcCCC
Q psy7896 424 QMRDDAIVCNIGHF 437 (718)
Q Consensus 424 ~MK~gAiLIN~GRg 437 (718)
.|+++..++.+|..
T Consensus 220 ~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 220 RLAKGGEIVLAGFY 233 (308)
T ss_pred hhhcCcEEEEEeec
Confidence 99999999999864
No 228
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.31 E-value=0.081 Score=58.28 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=104.5
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG 328 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg 328 (718)
.|-+||+-|.+.--.. . --++|+... --..+..+++.-+++|++...+...=.|++++-|.+.+
T Consensus 84 ~~kgEsl~Dtarvls~-y---~D~Iv~R~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e----------- 147 (336)
T PRK03515 84 IGHKESIKDTARVLGR-M---YDGIQYRGY-GQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQE----------- 147 (336)
T ss_pred CCCCCCHHHHHHHHHH-h---CcEEEEEeC-ChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence 3457888876553211 1 223344322 22233445566678999887766666777777666532
Q ss_pred ccccccchhhhhhhc-ccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCccH---H-----H-HhhcCc--e-
Q psy7896 329 VKLTKLTEDQAKYLD-IMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPINA---L-----Q-ASMEGY--E- 393 (718)
Q Consensus 329 v~~~~~~~~~~~~~g-~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~a---l-----~-a~~~G~--~- 393 (718)
..| ..+.|++|++||-+ ++.+.++..+..||++|.++-+..... . + +...|. .
T Consensus 148 ------------~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~ 215 (336)
T PRK03515 148 ------------HLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITL 215 (336)
T ss_pred ------------HhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEE
Confidence 123 35899999999986 689999999999999999975432211 1 0 112342 2
Q ss_pred ecCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896 394 VTTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGHF 437 (718)
Q Consensus 394 v~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GRg 437 (718)
..+++++++.+|+|.+.. + ....|+.+.++.. |+++++.-+.-.
T Consensus 216 ~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP~ 277 (336)
T PRK03515 216 TEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPA 277 (336)
T ss_pred EcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCCC
Confidence 357999999999998841 1 1235888888885 899999888653
No 229
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.30 E-value=0.013 Score=67.00 Aligned_cols=112 Identities=28% Similarity=0.326 Sum_probs=75.7
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh--hhhhhhhhhhhHHH---HHHHHHHhccccccc------
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYELDEEV---AALHLEHLGVKLTKL------ 334 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~--v~AvaeGf~L~r~i---~~~~l~~lgv~~~~~------ 334 (718)
...|++|+|||.||.|+.+|..|...|+.|+++++.+.-- ...-..-|.+..++ +...+...|+++...
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~ 199 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD 199 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc
Confidence 4578999999999999999999999999999998766532 11112234554433 444455556555311
Q ss_pred ---chhhh---------------------------------------hhhc-------ccccCcEEEEEecChhHHHHHH
Q psy7896 335 ---TEDQA---------------------------------------KYLD-------IMLAGKVAVVAGYGDVGKGCAQ 365 (718)
Q Consensus 335 ---~~~~~---------------------------------------~~~g-------~eL~GktVGIIG~G~IG~~vA~ 365 (718)
..... ...+ ....||+|.|||+|..+..++.
T Consensus 200 it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~ 279 (457)
T COG0493 200 ITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG 279 (457)
T ss_pred CCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHH
Confidence 00000 0001 1225699999999999999999
Q ss_pred HHHhCCC-EEEEE
Q psy7896 366 SLRLFGS-RVIVT 377 (718)
Q Consensus 366 ~l~~fGa-~Viv~ 377 (718)
.++.+|+ .|+..
T Consensus 280 t~~r~Ga~~v~~~ 292 (457)
T COG0493 280 TALRLGAKSVTCF 292 (457)
T ss_pred HHhhcCCeEEEEe
Confidence 9999999 46554
No 230
>KOG2380|consensus
Probab=96.30 E-value=0.0062 Score=66.33 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=70.5
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-eecCHHHHh-ccCcEEEEcCCCC---CCcCHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EVTTMEEAA-KEGGIFVTTTGCK---DIIRGEH 421 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v~~Leell-~~aDiIi~atgt~---~lI~~e~ 421 (718)
.-++|||||+|+.|+-.|..+...|..|+.+++......++ ..|. .+..+.+++ +++|+|..|+.-- .++..--
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~-~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatyp 129 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAE-KYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYP 129 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHH-HhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcC
Confidence 35789999999999999999999999999998765443322 2333 345677776 5799999887532 2333334
Q ss_pred HhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 422 FLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 422 l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
++++|.|++++..-... |...+++.+
T Consensus 130 fqrlrrgtlfvdvlSvK-efek~lfek 155 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVK-EFEKELFEK 155 (480)
T ss_pred chhhccceeEeeeeecc-hhHHHHHHH
Confidence 67789999999876543 444444444
No 231
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.28 E-value=0.015 Score=66.71 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=49.7
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCceecCHHHH--hccCcEEEEcCCC
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEVTTMEEA--AKEGGIFVTTTGC 413 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v~~Leel--l~~aDiIi~atgt 413 (718)
+..+.+++++|+|.|.+|++++..+...|++|+++++++.+..+.. ..+....+++++ +.++|+|+.++..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~ 400 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPP 400 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCC
Confidence 3457899999999999999999999999999999988765432211 111122333332 4577888877654
No 232
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.28 E-value=0.023 Score=61.56 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=71.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHH--Hh---hcCce---ecCHHHHhccCcEEEEcCCC-CC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQ--AS---MEGYE---VTTMEEAAKEGGIFVTTTGC-KD 415 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~--a~---~~G~~---v~~Leell~~aDiIi~atgt-~~ 415 (718)
.-++++|||.|..|+.-++.+.. +.. +|.++++++.+... +. ..|.. +.+.++++++||||+++|.. ..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P 195 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP 195 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc
Confidence 46899999999999988877754 454 69999988875322 11 12432 34799999999999998654 44
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhcc
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDKN 449 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~~ 449 (718)
+|+.+ .+|+|+-+.-+|.. ..|+|.+-+...
T Consensus 196 ~~~~~---~l~pg~hV~aiGs~~p~~~El~~~~l~~a 229 (301)
T PRK06407 196 IFNRK---YLGDEYHVNLAGSNYPNRREAEHSVLNDA 229 (301)
T ss_pred EecHH---HcCCCceEEecCCCCCCcccCCHHHHHhC
Confidence 66654 56899888888864 367887666543
No 233
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.011 Score=67.97 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=50.7
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecC---HHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTT---MEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~---Leell~~aDiIi~atg 412 (718)
+.|++|.|+|+|.+|.++++.|+..|++|+++|..+.........|..+.. ..+.++++|+|+..+|
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG 79 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG 79 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence 478999999999999999999999999999999665432222234655432 3455778999998765
No 234
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.27 E-value=0.0064 Score=62.02 Aligned_cols=92 Identities=16% Similarity=0.299 Sum_probs=62.9
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccH------------------------HHHhhcCcee-----
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA------------------------LQASMEGYEV----- 394 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~a------------------------l~a~~~G~~v----- 394 (718)
.|..++|+|+|.|.+|..+|..|...|. +++++|.|.... +........+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 4788999999999999999999999999 699998872110 0000011111
Q ss_pred ----cCHHHHhccCcEEEEcCCC---CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 395 ----TTMEEAAKEGGIFVTTTGC---KDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 395 ----~~Leell~~aDiIi~atgt---~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
.+++++++.+|+|+.++.+ +.++..+....|+...++...|-
T Consensus 98 ~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~ 146 (200)
T TIGR02354 98 KITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGL 146 (200)
T ss_pred eCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEecc
Confidence 1245577889999988654 44566666677777777775443
No 235
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.27 E-value=0.11 Score=57.28 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=104.7
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG 328 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg 328 (718)
.|-+||+.|.+.--. .--.+.|+.. +-.-.+..+++.-+++|++...+...=.|+.++-|.+-+
T Consensus 85 ~~kgEsl~Dt~rvls----~y~D~iviR~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e----------- 148 (331)
T PRK02102 85 LGKKESIEDTARVLG----RMYDGIEYRG-FKQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKE----------- 148 (331)
T ss_pred CCCCcCHHHHHHHHh----hcCCEEEEEC-CchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence 345789887654321 1123444443 323334445566778998877666666777777665422
Q ss_pred ccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCccH---H------HHhhcCce---e
Q psy7896 329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPINA---L------QASMEGYE---V 394 (718)
Q Consensus 329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~a---l------~a~~~G~~---v 394 (718)
..| .+.|++|++||-+ ++.+..+..+..||++|.++-+..... . .+...|.. .
T Consensus 149 ------------~~g-~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (331)
T PRK02102 149 ------------HFG-PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITIT 215 (331)
T ss_pred ------------HhC-CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEE
Confidence 112 4789999999997 789999999999999999975432211 0 01123433 3
Q ss_pred cCHHHHhccCcEEEEcC----C------------CCCCcCHHHHh-cCCCCeEEEEcCCC
Q psy7896 395 TTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFL-QMRDDAIVCNIGHF 437 (718)
Q Consensus 395 ~~Leell~~aDiIi~at----g------------t~~lI~~e~l~-~MK~gAiLIN~GRg 437 (718)
.+++++++.+|+|.+-. + ...-|+++.++ .+|+++++.-+.-.
T Consensus 216 ~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP~ 275 (331)
T PRK02102 216 EDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPA 275 (331)
T ss_pred cCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCCC
Confidence 57999999999998741 1 13358888888 58999999888654
No 236
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.26 E-value=0.011 Score=63.99 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=58.5
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-----------------cCHHHHhccCcEEEEcC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-----------------TTMEEAAKEGGIFVTTT 411 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-----------------~~Leell~~aDiIi~at 411 (718)
++|+|||.|.||..+|..+...|.+|+++++++.. ......|..+ .+-.+.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 57999999999999999999999999999876532 1112233221 12225678899999986
Q ss_pred CCCCCcC--HHHHhcCCCCeEEEEcCC
Q psy7896 412 GCKDIIR--GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 412 gt~~lI~--~e~l~~MK~gAiLIN~GR 436 (718)
.+..... .+....++++.+++.+.-
T Consensus 82 k~~~~~~~~~~l~~~~~~~~iii~~~n 108 (341)
T PRK08229 82 KSAATADAAAALAGHARPGAVVVSFQN 108 (341)
T ss_pred cCcchHHHHHHHHhhCCCCCEEEEeCC
Confidence 6544311 222345678888877643
No 237
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.26 E-value=0.11 Score=57.73 Aligned_cols=176 Identities=17% Similarity=0.142 Sum_probs=107.4
Q ss_pred CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCC---CChhHHHHHHh------------cC
Q psy7896 228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGD---VGKGCAQSLRL------------FG 292 (718)
Q Consensus 228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~---vG~~~A~aLra------------~G 292 (718)
.|+--++.++.+. ...|.+||+-|.+.-... =-.+.|+.... .+-.....+.+ -.
T Consensus 66 ~LGg~~i~l~~~~------s~~~kgEsl~Dtarvls~----y~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~ 135 (357)
T TIGR03316 66 LLGLHAQDLDEGK------SQIGHGETVRETAEMISF----FADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQR 135 (357)
T ss_pred HcCCcEEEeCCcc------ccCCCCCCHHHHHHHHHH----hCcEEEEeCCCccccccHHHHHHHHhhhhccccccccCC
Confidence 3455566665432 124567999876653222 12344455322 12232222333 36
Q ss_pred CeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc--cccCcEEEEEecC--------hhHHH
Q psy7896 293 SRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI--MLAGKVAVVAGYG--------DVGKG 362 (718)
Q Consensus 293 v~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~--eL~GktVGIIG~G--------~IG~~ 362 (718)
++|++...+...=.|++++-|.+.+ ..|. .++|++|+|+|.| ++.+.
T Consensus 136 vPVINa~~~~~HPtQaLaDl~Ti~e-----------------------~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~S 192 (357)
T TIGR03316 136 PPLVNLQCDIDHPTQAMADIMTLQE-----------------------KFGGIENLKGKKFAMTWAYSPSYGKPLSVPQG 192 (357)
T ss_pred CCEEECCCCCCCchHHHHHHHHHHH-----------------------HhCCccccCCCEEEEEeccccccCccchHHHH
Confidence 8898877666666777777665532 1232 3789999999853 45577
Q ss_pred HHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCce---ecCHHHHhccCcEEEEcC----C--------------
Q psy7896 363 CAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGYE---VTTMEEAAKEGGIFVTTT----G-------------- 412 (718)
Q Consensus 363 vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~~---v~~Leell~~aDiIi~at----g-------------- 412 (718)
++..+..||++|.++-+.... .. + +...|.. ..+++++++.+|+|.+.. +
T Consensus 193 l~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~ 272 (357)
T TIGR03316 193 IIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDT 272 (357)
T ss_pred HHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCeeccccccccchhcccchh
Confidence 788889999999997543221 11 1 1123433 368999999999999752 1
Q ss_pred -----------------CCCCcCHHHHhcCC-CCeEEEEcCC
Q psy7896 413 -----------------CKDIIRGEHFLQMR-DDAIVCNIGH 436 (718)
Q Consensus 413 -----------------t~~lI~~e~l~~MK-~gAiLIN~GR 436 (718)
....|+.+.++.+| +++++.-+.-
T Consensus 273 ~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP 314 (357)
T TIGR03316 273 EGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLP 314 (357)
T ss_pred hhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCCC
Confidence 02238888888998 8899888864
No 238
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.26 E-value=0.017 Score=63.07 Aligned_cols=78 Identities=24% Similarity=0.304 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCEEEEEecCCccH-----HHHhhcCceec-CHHHHhccCcEEEEcCCCCC----CcCHHHHhcCCCCe
Q psy7896 360 GKGCAQSLRLFGSRVIVTEIDPINA-----LQASMEGYEVT-TMEEAAKEGGIFVTTTGCKD----IIRGEHFLQMRDDA 429 (718)
Q Consensus 360 G~~vA~~l~~fGa~Viv~d~dp~~a-----l~a~~~G~~v~-~Leell~~aDiIi~atgt~~----lI~~e~l~~MK~gA 429 (718)
|+.+|+.|..-|..|+++|+++... ......|.... +..++++++|+|+++..+.. ++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8999999999999999998876421 11234566554 58899999999999855432 33 34678899999
Q ss_pred EEEEcCCCC
Q psy7896 430 IVCNIGHFD 438 (718)
Q Consensus 430 iLIN~GRgd 438 (718)
++||++-.+
T Consensus 111 IVID~STIs 119 (341)
T TIGR01724 111 VICNTCTVS 119 (341)
T ss_pred EEEECCCCC
Confidence 999998754
No 239
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.25 E-value=0.01 Score=54.02 Aligned_cols=63 Identities=32% Similarity=0.460 Sum_probs=44.9
Q ss_pred EEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--------CHHHH-hccCcEEEEcCCC
Q psy7896 351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--------TMEEA-AKEGGIFVTTTGC 413 (718)
Q Consensus 351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--------~Leel-l~~aDiIi~atgt 413 (718)
|.|+|+|++|+.+++.|+..+.+|+++|.+|.....+...|+.+. .+.++ +.++|.++.++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCC
Confidence 579999999999999999977799999999976655555665432 12232 4566766666543
No 240
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.23 E-value=0.11 Score=57.21 Aligned_cols=162 Identities=13% Similarity=0.057 Sum_probs=104.8
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG 328 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg 328 (718)
.|.+||+-|.+.--.. + -.++|+... ---.+-..++.-+++|++...+...=.|+.++-|.+.+
T Consensus 84 ~~kgEsl~Dtarvls~-y---~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e----------- 147 (334)
T PRK12562 84 IGHKESIKDTARVLGR-M---YDGIQYRGH-GQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQE----------- 147 (334)
T ss_pred CCCCcCHHHHHHHHHH-h---CCEEEEECC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence 4567998876653211 1 223344322 22233344556678999877666666777777665532
Q ss_pred ccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCce---e
Q psy7896 329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGYE---V 394 (718)
Q Consensus 329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~~---v 394 (718)
.+.|..+.|++|++||-+ ++.+..+..+..||++|.++-+.... .. + +...|.. .
T Consensus 148 -----------~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~ 216 (334)
T PRK12562 148 -----------HLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLT 216 (334)
T ss_pred -----------HhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEE
Confidence 111235889999999986 78999999999999999987543221 11 0 1112422 3
Q ss_pred cCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896 395 TTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGHF 437 (718)
Q Consensus 395 ~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GRg 437 (718)
.+++++++.+|+|.+.. + ...-|+.+.++.. |+++++.-+.-.
T Consensus 217 ~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~ 277 (334)
T PRK12562 217 EDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPA 277 (334)
T ss_pred cCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCC
Confidence 67999999999999842 1 1234888888885 899999988754
No 241
>PLN02342 ornithine carbamoyltransferase
Probab=96.23 E-value=0.12 Score=57.15 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=110.1
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG 328 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg 328 (718)
.+-+||+.|.+.--.. . -.+.|+....-+ .+...++.-+++|++...+...=.|++++-|.+.+
T Consensus 124 ~~kGESl~DTarvLs~-y---~D~IviR~~~~~-~~~~la~~~~vPVINA~~~~~HPtQaLaDl~Ti~e----------- 187 (348)
T PLN02342 124 LGKREETRDIARVLSR-Y---NDIIMARVFAHQ-DVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIE----------- 187 (348)
T ss_pred CCCCcCHHHHHHHHHH-h---CCEEEEeCCChH-HHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence 3457898876553211 1 234444433222 23334456678999887666666677777665432
Q ss_pred ccccccchhhhhhhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccH---H--HHhhcC---ce-ecCHH
Q psy7896 329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINA---L--QASMEG---YE-VTTME 398 (718)
Q Consensus 329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~a---l--~a~~~G---~~-v~~Le 398 (718)
..| .+.|++|++||-+ ++.+..+..+..||++|.++-+..... . .+...| +. ..+++
T Consensus 188 ------------~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~ 254 (348)
T PLN02342 188 ------------HIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPA 254 (348)
T ss_pred ------------HhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHH
Confidence 123 4889999999984 488888888999999999975433211 1 111122 33 36799
Q ss_pred HHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHh
Q psy7896 399 EAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLD 447 (718)
Q Consensus 399 ell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~ 447 (718)
++++.+|+|.+.. + ....|+.+.++.+|+++++.-++-. +.|++.+-+.
T Consensus 255 eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~eV~d 321 (348)
T PLN02342 255 EAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVME 321 (348)
T ss_pred HHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCcCCCceecHHHhC
Confidence 9999999999752 1 1246999999999999999988764 3477755444
No 242
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.21 E-value=0.1 Score=57.51 Aligned_cols=186 Identities=16% Similarity=0.060 Sum_probs=116.3
Q ss_pred ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896 229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 308 (718)
Q Consensus 229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A 308 (718)
|+--++..+.+.. ..+.+||+.|.+.-... . --++|+.. +-...+-.+++..+++|++...+...=.|+
T Consensus 67 LGg~~i~l~~~~s------s~~kgEsl~Dtarvls~-y---~D~iviR~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQa 135 (338)
T PRK02255 67 LGGHAQYLAPGQI------QLGGHESLEDTARVLSR-L---VDIIMARV-DRHQTVVELAKYATVPVINGMSDYNHPTQE 135 (338)
T ss_pred cCCeEEEeCcccc------cCCCCcCHHHHHHHHHH-h---CcEEEEec-CChHHHHHHHHhCCCCEEECCCCCCChHHH
Confidence 4445555554322 22457998876543211 1 12333332 222234445566678999877666666677
Q ss_pred hhhhhhhhHHHHHHHHHHhcccccccchhhhhhh-cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc---
Q psy7896 309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYL-DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN--- 383 (718)
Q Consensus 309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~-g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~--- 383 (718)
+++-|.+.+ .+. |..+.|++|++||- .++....+..+..||++|.++-+....
T Consensus 136 LaDl~Ti~e----------------------~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~ 193 (338)
T PRK02255 136 LGDLFTMIE----------------------HLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPE 193 (338)
T ss_pred HHHHHHHHH----------------------HhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCH
Confidence 777665422 111 23589999999998 578888899999999999998543221
Q ss_pred HH-H-----HhhcC--ce-ecCHHHHhccCcEEEEcC-----C-------------CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 384 AL-Q-----ASMEG--YE-VTTMEEAAKEGGIFVTTT-----G-------------CKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 384 al-~-----a~~~G--~~-v~~Leell~~aDiIi~at-----g-------------t~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
.. + +...| +. ..+++++++.+|||.+.. + ....|+.+.++.+|+++++.-+.-
T Consensus 194 ~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP 273 (338)
T PRK02255 194 EHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP 273 (338)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence 11 1 11224 22 368999999999998821 1 124689999999999999998875
Q ss_pred --CCccccHHHHh
Q psy7896 437 --FDCEIQVSWLD 447 (718)
Q Consensus 437 --gd~Eid~~aL~ 447 (718)
-+.|++.+-+.
T Consensus 274 ~~Rg~Eis~~V~d 286 (338)
T PRK02255 274 ATRGEEVTDEVMD 286 (338)
T ss_pred CcCCceecHHHhC
Confidence 33577755443
No 243
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.20 E-value=0.025 Score=63.48 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=32.1
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46899999999999999999999999999998754
No 244
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.19 E-value=0.027 Score=62.22 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=70.8
Q ss_pred cCcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHH--Hh--hcCce---ecCHHHHhccCcEEEEcCCCC---
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQ--AS--MEGYE---VTTMEEAAKEGGIFVTTTGCK--- 414 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~--a~--~~G~~---v~~Leell~~aDiIi~atgt~--- 414 (718)
.-++++|||.|..++.-++.+. -+.. +|.++++++.+... .. ..++. +.+.++++++||||+++|...
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~ 207 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNA 207 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCC
Confidence 3589999999999988877554 3455 69999998875321 11 12433 357999999999999987543
Q ss_pred CCcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 415 DIIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 415 ~lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
-++..+ .+|+|+.+.-+|.. ..|+|.+-+..
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs~~p~~~Eld~~~l~~ 241 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGGDCPGKTELHPDILRR 241 (346)
T ss_pred ceecHH---HcCCCcEEEecCCCCCCcccCCHHHHhc
Confidence 356654 56999999988854 35787666654
No 245
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.17 E-value=0.057 Score=53.09 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=72.3
Q ss_pred cCcEEEEEe--cChhHHHHHHHHHhCCCEEEEEecCCc--cH----H-----HHhhcCc--e-ecCHHHHhccCcEEEEc
Q psy7896 347 AGKVAVVAG--YGDVGKGCAQSLRLFGSRVIVTEIDPI--NA----L-----QASMEGY--E-VTTMEEAAKEGGIFVTT 410 (718)
Q Consensus 347 ~GktVGIIG--~G~IG~~vA~~l~~fGa~Viv~d~dp~--~a----l-----~a~~~G~--~-v~~Leell~~aDiIi~a 410 (718)
.|++|++|| .+++...++..+..||+++.++-+... .. + .+...|. . ..+++++++++|||.+.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 379999999999999999888754331 11 0 0111232 2 35899999999999874
Q ss_pred CCC---------------CCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896 411 TGC---------------KDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK 448 (718)
Q Consensus 411 tgt---------------~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~ 448 (718)
.-. ...++.+.++.+|+++++.-+.- -+.|++.+-+..
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV~~~ 135 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEVDDS 135 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHHHTS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhHhCC
Confidence 211 14699999999999999999986 346777654443
No 246
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.16 E-value=0.027 Score=61.83 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=74.6
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHHH----hhcCc----eecCHHHHhccCcEEEEcCCC-CC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQA----SMEGY----EVTTMEEAAKEGGIFVTTTGC-KD 415 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a----~~~G~----~v~~Leell~~aDiIi~atgt-~~ 415 (718)
.-++++|||.|..++.-++.++. ++. +|.+++++|...... ...+. .+.+.+++++.||||+++|.+ .-
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~P 208 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEP 208 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCC
Confidence 35789999999999999998864 566 799999988653221 12222 345789999999999998654 44
Q ss_pred CcCHHHHhcCCCCeEEEEcCC---CCccccHHHHhcc
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGH---FDCEIQVSWLDKN 449 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GR---gd~Eid~~aL~~~ 449 (718)
++.. +.+|+|+.+..+|- +..|+|.+.|...
T Consensus 209 il~~---~~l~~G~hI~aiGad~p~k~Eld~e~l~ra 242 (330)
T COG2423 209 VLKA---EWLKPGTHINAIGADAPGKRELDPEVLARA 242 (330)
T ss_pred eecH---hhcCCCcEEEecCCCCcccccCCHHHHHhc
Confidence 5655 45689999999995 3468888877764
No 247
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.13 E-value=0.03 Score=61.10 Aligned_cols=99 Identities=24% Similarity=0.214 Sum_probs=69.3
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-CC-CEEEEEecCCccHHHHh-----hcCce---ecCHHHHhccCcEEEEcCCCC-C
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-FG-SRVIVTEIDPINALQAS-----MEGYE---VTTMEEAAKEGGIFVTTTGCK-D 415 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-fG-a~Viv~d~dp~~al~a~-----~~G~~---v~~Leell~~aDiIi~atgt~-~ 415 (718)
..++++|||.|.+|+..+..+.. .+ .+|.++++++.+..... ..|.. +.+++++++++|+|+++|... .
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p 210 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP 210 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc
Confidence 46899999999999998887764 56 47999998876532211 12444 357889999999999987653 4
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK 448 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~ 448 (718)
+|..+ .+|+|+.+..+|.. ..|+|.+-+..
T Consensus 211 ~i~~~---~l~~g~~v~~vg~d~~~~rEld~~~l~~ 243 (330)
T PRK08291 211 ILKAE---WLHPGLHVTAMGSDAEHKNEIAPAVFAA 243 (330)
T ss_pred EecHH---HcCCCceEEeeCCCCCCcccCCHHHHhh
Confidence 56553 36888877666642 24677665554
No 248
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.12 E-value=0.012 Score=61.09 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=61.2
Q ss_pred cEEEEEecChhHHHHHHHHHh--CCCE-EEEEecCCccHHHHh--hcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRL--FGSR-VIVTEIDPINALQAS--MEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFL 423 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~--fGa~-Viv~d~dp~~al~a~--~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~ 423 (718)
.+|||||||.||+.+.+.++. ...+ |.+||+++.++.+.. ..+..+.+++|++++.|+++.+.+... +..-..+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~A-v~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEA-VREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHH-HHHHhHH
Confidence 379999999999999999974 3454 778999887654332 223345789999999999998876532 2222233
Q ss_pred cCCC--CeEEEEcCCCC
Q psy7896 424 QMRD--DAIVCNIGHFD 438 (718)
Q Consensus 424 ~MK~--gAiLIN~GRgd 438 (718)
.+|. +.+++.+|-..
T Consensus 80 ~L~~g~d~iV~SVGALa 96 (255)
T COG1712 80 ILKAGIDVIVMSVGALA 96 (255)
T ss_pred HHhcCCCEEEEechhcc
Confidence 4444 46677776654
No 249
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.10 E-value=0.031 Score=59.94 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=80.9
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhC----CC-------EEEEEecCCc--------cHHH--HhhcCc--eecCHH
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLF----GS-------RVIVTEIDPI--------NALQ--ASMEGY--EVTTME 398 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~f----Ga-------~Viv~d~dp~--------~al~--a~~~G~--~v~~Le 398 (718)
.|..|...+|.|+|.|.-|..+|+.+... |+ ++.++|++-. ...+ -....- ...+|.
T Consensus 19 ~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~ 98 (279)
T cd05312 19 TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLL 98 (279)
T ss_pred hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHH
Confidence 46788899999999999999999999776 87 7888776421 1111 011111 345899
Q ss_pred HHhc--cCcEEEEcCCCCCCcCHHHHhcCC---CCeEEEEcCCCCc--cccHHHHh
Q psy7896 399 EAAK--EGGIFVTTTGCKDIIRGEHFLQMR---DDAIVCNIGHFDC--EIQVSWLD 447 (718)
Q Consensus 399 ell~--~aDiIi~atgt~~lI~~e~l~~MK---~gAiLIN~GRgd~--Eid~~aL~ 447 (718)
|+++ ..|+++-+++..++|+++.++.|. +..++.-.+.-.. |+..+...
T Consensus 99 e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~ 154 (279)
T cd05312 99 EVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAY 154 (279)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHH
Confidence 9999 889999988877999999999998 8899998888654 77765443
No 250
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.10 E-value=0.02 Score=62.75 Aligned_cols=204 Identities=19% Similarity=0.219 Sum_probs=112.2
Q ss_pred cceEEEecCCcccccccccccchhhHHH------------HHhh--hcccccCCcEEEEEecCCCChhHHHHHHhcCCeE
Q psy7896 230 GVPAINVNDSVTKSKFDNLYGCRESLVD------------GLKR--ATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295 (718)
Q Consensus 230 ~~Pv~~v~ds~~K~~fd~~~G~~es~~~------------~i~r--~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~V 295 (718)
.++|.|+..+...+.-+...|.-=++.+ .|.+ ..+..+.||++.|+|+|.+|..+|..|+.+|.+|
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v 168 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKV 168 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeE
Confidence 7889999888888777766651111111 1111 2344678999999999999999999999999999
Q ss_pred EEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEE
Q psy7896 296 IVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375 (718)
Q Consensus 296 tV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi 375 (718)
..+|.-..+.......++.... +-..|+. ++|+
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~~~---------------------------------------------Ld~lL~~--sDiv 201 (324)
T COG0111 169 IGYDPYSPRERAGVDGVVGVDS---------------------------------------------LDELLAE--ADIL 201 (324)
T ss_pred EEECCCCchhhhccccceeccc---------------------------------------------HHHHHhh--CCEE
Confidence 9998844443222111111100 0022221 3344
Q ss_pred EEecCCccHHHHhhcCceecCHHHH--hccCcEEEEcCCCCCCcCHHHH-hcCCCCeEE-EEcCCCCccccHHHHhcccc
Q psy7896 376 VTEIDPINALQASMEGYEVTTMEEA--AKEGGIFVTTTGCKDIIRGEHF-LQMRDDAIV-CNIGHFDCEIQVSWLDKNAV 451 (718)
Q Consensus 376 v~d~dp~~al~a~~~G~~v~~Leel--l~~aDiIi~atgt~~lI~~e~l-~~MK~gAiL-IN~GRgd~Eid~~aL~~~~l 451 (718)
... -|... +-....+-+++ ++..-++|.+ +--.+++.+.| +.++.|.+- .-.=-++.|...+.
T Consensus 202 ~lh-~PlT~-----eT~g~i~~~~~a~MK~gailIN~-aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~------ 268 (324)
T COG0111 202 TLH-LPLTP-----ETRGLINAEELAKMKPGAILINA-ARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPAD------ 268 (324)
T ss_pred EEc-CCCCc-----chhcccCHHHHhhCCCCeEEEEC-CCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCC------
Confidence 432 12211 01112233333 4444455544 44457787764 677776543 11112222322211
Q ss_pred ceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCc
Q psy7896 452 EKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAP 494 (718)
Q Consensus 452 ~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a 494 (718)
..+--.|+|..|||.+..+.|++.+. ...+..|+..+..+.+
T Consensus 269 ~pL~~~pnV~~TPHia~~T~ea~~~~-~~~~~~~i~~~l~g~~ 310 (324)
T COG0111 269 SPLWDLPNVILTPHIGGSTDEAQERV-AEIVAENIVRYLAGGP 310 (324)
T ss_pred ChhhcCCCeEECCcccccCHHHHHHH-HHHHHHHHHHHHcCCC
Confidence 11223588989999999999887664 3334455555555544
No 251
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.015 Score=66.11 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=49.7
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-----HHHhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-----LQASMEGYEVT---TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-----l~a~~~G~~v~---~Leell~~aDiIi~atg 412 (718)
+.+++|+|+|+|..|+++|+.|+..|++|+++|.++... .+....|+.+. ...+.+.++|+|+..++
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spg 86 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPS 86 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCC
Confidence 568999999999999999999999999999999765311 11223465542 22455678999987643
No 252
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.09 E-value=0.12 Score=56.36 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=116.2
Q ss_pred ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhc--CCeEEEe-ecCchhh
Q psy7896 229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLF--GSRVIVT-EIDPINA 305 (718)
Q Consensus 229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~--Gv~VtV~-D~dp~r~ 305 (718)
|+--++.++.+.. ..|-+||+.|...--.. -+-.+.|+.. + .-+.+..+.+. .++|++. +.+...=
T Consensus 70 LGg~~~~~~~~~s------~~~kgEsl~Dtarvls~---y~~D~iv~R~-~-~~~~~~~~a~~~~~vPvINag~g~~~HP 138 (310)
T PRK13814 70 LGAMVLNPNLKIS------AISKGETLFDTIKTLEA---MGVYFFIVRH-S-ENETPEQIAKQLSSGVVINAGDGNHQHP 138 (310)
T ss_pred hCCeEEECCCccc------cCCCCCCHHHHHHHHHH---hCCCEEEEeC-C-chhHHHHHHHhCCCCCeEECCcCCCCCc
Confidence 4445666654322 24567998876543211 1212333432 2 23334344333 5888888 7777777
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEec---ChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 306 LQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGY---GDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 306 v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~---G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|+.++-|.+.+ ..| .+.|++|++||- +++....+..+..||+ +|.++-+..
T Consensus 139 tQaLaDl~Ti~e-----------------------~~g-~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~ 194 (310)
T PRK13814 139 SQALIDLMTIKQ-----------------------HKP-HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSS 194 (310)
T ss_pred hHHHHHHHHHHH-----------------------HhC-CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 778777766532 112 378999999998 5999999999999999 899875433
Q ss_pred ccHHHHhhcCce-ecCHHHHhccCcEEEEcC-------C--------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccH
Q psy7896 382 INALQASMEGYE-VTTMEEAAKEGGIFVTTT-------G--------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQV 443 (718)
Q Consensus 382 ~~al~a~~~G~~-v~~Leell~~aDiIi~at-------g--------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~ 443 (718)
....+.....+. ..+++++++.+|||.+.. . ....|+.+.++.+|+++++.-+.-. +.|++.
T Consensus 195 ~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcLP~~Rg~Ei~~ 274 (310)
T PRK13814 195 LLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINS 274 (310)
T ss_pred cCcCccccceEEEEcCHHHHhCCCCEEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECCCCCCCCCeeCH
Confidence 211111111233 357999999999999731 0 1246899999999999999988753 347765
Q ss_pred HHHh
Q psy7896 444 SWLD 447 (718)
Q Consensus 444 ~aL~ 447 (718)
+-+.
T Consensus 275 ~V~d 278 (310)
T PRK13814 275 DVAD 278 (310)
T ss_pred HHhC
Confidence 5443
No 253
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.07 E-value=0.019 Score=60.92 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=56.4
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--------------ecCHHHHhccCcEEEEcCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--------------VTTMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--------------v~~Leell~~aDiIi~atgt~ 414 (718)
++|+|||.|.+|..+|..|..-|.+|+++++ +.........|.. ..+.+++.+.+|++++++.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 3799999999999999999999999999987 4322111122322 124556668899999987654
Q ss_pred CCcC--HHHHhcCCCCeEEEEcCC
Q psy7896 415 DIIR--GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 415 ~lI~--~e~l~~MK~gAiLIN~GR 436 (718)
.+-. .+.-...+++.+++.+.-
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeC
Confidence 3311 111223456777776533
No 254
>PRK13984 putative oxidoreductase; Provisional
Probab=96.06 E-value=0.018 Score=67.58 Aligned_cols=38 Identities=26% Similarity=0.212 Sum_probs=34.3
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 303 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~ 303 (718)
...+++++|||.|+.|+.+|..|+++|+.|++++..+.
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35799999999999999999999999999999987653
No 255
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.97 E-value=0.17 Score=55.63 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=102.7
Q ss_pred cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcc
Q psy7896 250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGV 329 (718)
Q Consensus 250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv 329 (718)
+-+||+.|.+.--.. + --++|+. .+---.+..+++...++|++...+...=.|+.++-|.+-+
T Consensus 85 ~kgEsl~DTarvls~-y---~D~iviR-~~~~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e------------ 147 (332)
T PRK04284 85 GKKESTKDTARVLGG-M---YDGIEYR-GFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKE------------ 147 (332)
T ss_pred CCCcCHHHHHHHHHH-h---CCEEEEe-cCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH------------
Confidence 457888776543211 1 2233333 3333334445566678998876665666677777665422
Q ss_pred cccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---H-H----H-HhhcCc--e-ec
Q psy7896 330 KLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---A-L----Q-ASMEGY--E-VT 395 (718)
Q Consensus 330 ~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---a-l----~-a~~~G~--~-v~ 395 (718)
.+.| .+.|++|++||-+ ++.+..+..+..||++|.++-+.... . . + +...|. . ..
T Consensus 148 ----------~~~g-~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 148 ----------HLKK-PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred ----------HhcC-CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 1112 4789999999985 88999999999999999997543211 1 1 0 112342 2 35
Q ss_pred CHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcCC-CCeEEEEcCC
Q psy7896 396 TMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQMR-DDAIVCNIGH 436 (718)
Q Consensus 396 ~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~MK-~gAiLIN~GR 436 (718)
+++++++.+|+|.+.. + ....|+.+.++.+| +++++.-++-
T Consensus 217 d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP 275 (332)
T PRK04284 217 DIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLP 275 (332)
T ss_pred CHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCC
Confidence 7999999999999841 1 13358889999986 5999988875
No 256
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.96 E-value=0.013 Score=69.14 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=70.6
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----C---HHHH-hccCcEEEEcCCCC--CC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----T---MEEA-AKEGGIFVTTTGCK--DI 416 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~---Leel-l~~aDiIi~atgt~--~l 416 (718)
..+|.|+|+|++|+.+++.|...|.++++.|.||.+..++...|+.+. + ++++ ++++|.++.++++. ++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 467999999999999999999999999999999976555555665431 2 3333 56899998887653 22
Q ss_pred cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE 452 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~ 452 (718)
.-.....++.|...++--.+ ++.+.+.|.+.+.+
T Consensus 480 ~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~ 513 (601)
T PRK03659 480 KIVELCQQHFPHLHILARAR--GRVEAHELLQAGVT 513 (601)
T ss_pred HHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCC
Confidence 22233455666666665555 34455667665544
No 257
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.93 E-value=0.043 Score=58.14 Aligned_cols=106 Identities=9% Similarity=0.102 Sum_probs=81.4
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCC-----------EEEEEecCCc--------cHHH-----HhhcCceecCH
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-----------RVIVTEIDPI--------NALQ-----ASMEGYEVTTM 397 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-----------~Viv~d~dp~--------~al~-----a~~~G~~v~~L 397 (718)
.|..|...++.|+|.|.-|..+|+.+...++ ++.++|..-. ...+ ...+.-...+|
T Consensus 19 ~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L 98 (254)
T cd00762 19 TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDL 98 (254)
T ss_pred hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCH
Confidence 4678899999999999999999999988776 5777765321 1101 11122234689
Q ss_pred HHHhc--cCcEEEEcCCCCCCcCHHHHhcCC---CCeEEEEcCCCCc--cccHHHHh
Q psy7896 398 EEAAK--EGGIFVTTTGCKDIIRGEHFLQMR---DDAIVCNIGHFDC--EIQVSWLD 447 (718)
Q Consensus 398 eell~--~aDiIi~atgt~~lI~~e~l~~MK---~gAiLIN~GRgd~--Eid~~aL~ 447 (718)
.|+++ ..|+++-.++..++|+++.++.|. +..++.-.+.-.. |+..+...
T Consensus 99 ~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~ 155 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAY 155 (254)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHH
Confidence 99999 999999998888999999999999 8899998888654 77765443
No 258
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.92 E-value=0.0099 Score=64.14 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=72.4
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh--------------hcCce-ecC----------H
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS--------------MEGYE-VTT----------M 397 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~--------------~~G~~-v~~----------L 397 (718)
+....+.++.++|.|-+|...+...+.+|+-|+.+|..|....+.. ..||- .++ +
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 4456778899999999999999999999999999988876533222 12332 122 2
Q ss_pred HHHhccCcEEEEc---CC--CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 398 EEAAKEGGIFVTT---TG--CKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 398 eell~~aDiIi~a---tg--t~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
.+.+++.||||++ +| .+.+++++..+.||+|+++|+.+-
T Consensus 239 a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa 282 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAA 282 (356)
T ss_pred HHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehh
Confidence 3567899999986 34 356899999999999999999864
No 259
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.92 E-value=0.023 Score=59.74 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=65.2
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCcee-cC---HHHHh------ccCcEEEEcCCCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYEV-TT---MEEAA------KEGGIFVTTTGCKD 415 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~v-~~---Leell------~~aDiIi~atgt~~ 415 (718)
.|++|.|+|.|.||..+++.++.+|++ |++++.++.+...+...|... .+ ..+.+ +..|+++-++|...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 789999999999999999999999997 888877766543333345421 11 11211 24799999887654
Q ss_pred CcCHHHHhcCCCCeEEEEcCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GR 436 (718)
.+. ..++.++++..++.+|.
T Consensus 200 ~~~-~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 200 AVR-ACLESLDVGGTAVLAGS 219 (280)
T ss_pred HHH-HHHHHhcCCCEEEEecc
Confidence 444 46889999999999985
No 260
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.90 E-value=0.013 Score=69.20 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=68.7
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----CH---HHH-hccCcEEEEcCCCC--CC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----TM---EEA-AKEGGIFVTTTGCK--DI 416 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~L---eel-l~~aDiIi~atgt~--~l 416 (718)
..+|.|+|+|++|+.+++.|+..|.++++.|.||.+.......|+.+. +. +++ +.++|.++.++++. ++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 478999999999999999999999999999999986655555676542 22 222 45889888876652 22
Q ss_pred cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896 417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE 452 (718)
Q Consensus 417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~ 452 (718)
.-....+.+.|...++--++ +......|.+.+.+
T Consensus 480 ~i~~~ar~~~p~~~iiaRa~--d~~~~~~L~~~Gad 513 (621)
T PRK03562 480 QLVELVKEHFPHLQIIARAR--DVDHYIRLRQAGVE 513 (621)
T ss_pred HHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHCCCC
Confidence 22234455556655554333 33445566665544
No 261
>KOG0023|consensus
Probab=95.90 E-value=0.019 Score=62.42 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=58.6
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCce--ecC------HHHHhccCcEEEEcCC--CCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYE--VTT------MEEAAKEGGIFVTTTG--CKD 415 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~--v~~------Leell~~aDiIi~atg--t~~ 415 (718)
.|+.|||+|+|-+|.--.+.+++||++|++++....+..++.. .|.+ +.. ++++.+.-|.++-+.. ..+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~ 260 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEH 260 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecccc
Confidence 8999999999999999999999999999999877644433332 3321 111 2334444454443322 233
Q ss_pred CcCHHHHhcCCCCeEEEEcCCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GRg 437 (718)
-+. ..++.||.+..+|-+|--
T Consensus 261 ~~~-~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 261 ALE-PLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred chH-HHHHHhhcCCEEEEEeCc
Confidence 333 356677777777777654
No 262
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.88 E-value=0.056 Score=62.40 Aligned_cols=37 Identities=32% Similarity=0.359 Sum_probs=33.5
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
..||+|.|||.|++|..+|..|+.+|.+|++++.++.
T Consensus 349 ~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 349 FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 4789999999999999999999999999999877653
No 263
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.84 E-value=0.23 Score=56.42 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=106.9
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEee-cCchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE-IDPINALQASMEGYELDEEVAALHLEHL 327 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D-~dp~r~v~AvaeGf~L~r~i~~~~l~~l 327 (718)
.+-+||+.|...--... -.+.|+....-+ .+..+++..+++|++.- .+...=.|++++-|.+.+
T Consensus 166 ~~kGESi~DTarvLs~y----~D~IviR~~~~~-~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E---------- 230 (429)
T PRK11891 166 MAKGESIYDTSRVMSGY----VDALVIRHPEQG-SVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQR---------- 230 (429)
T ss_pred CCCCCCHHHHHHHHHHh----CCEEEEeCCchh-HHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHH----------
Confidence 34578887755432111 224444432222 44455566778888865 355555667777665432
Q ss_pred cccccccchhhhhh--hcccccCcEEEEEecC---hhHHHHHHHHHhC-CCEEEEEecCCcc---HH--HHhhcCc--e-
Q psy7896 328 GVKLTKLTEDQAKY--LDIMLAGKVAVVAGYG---DVGKGCAQSLRLF-GSRVIVTEIDPIN---AL--QASMEGY--E- 393 (718)
Q Consensus 328 gv~~~~~~~~~~~~--~g~eL~GktVGIIG~G---~IG~~vA~~l~~f-Ga~Viv~d~dp~~---al--~a~~~G~--~- 393 (718)
.+ .|..+.|++|++||-+ ++....+..+..+ |++|.++-+.... .. ++...|. .
T Consensus 231 ------------~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~ 298 (429)
T PRK11891 231 ------------EFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ 298 (429)
T ss_pred ------------HhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEE
Confidence 11 1224899999999995 8899999988776 9999997543321 11 1112243 2
Q ss_pred ecCHHHHhccCcEEEEcCC--------------CCCCcCHHHHhc-CCCCeEEEEcCCC-----CccccHHHH
Q psy7896 394 VTTMEEAAKEGGIFVTTTG--------------CKDIIRGEHFLQ-MRDDAIVCNIGHF-----DCEIQVSWL 446 (718)
Q Consensus 394 v~~Leell~~aDiIi~atg--------------t~~lI~~e~l~~-MK~gAiLIN~GRg-----d~Eid~~aL 446 (718)
+.+++++++.+|+|.+... ....|+.+.++. .|+++++.-+.-- ..|++.+-+
T Consensus 299 ~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLPr~~R~~g~EIs~eV~ 371 (429)
T PRK11891 299 TDDLAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGANDLSTDLN 371 (429)
T ss_pred EcCHHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCCCCCCCCCcEeCHHHh
Confidence 3689999999999997421 123588888888 8999999877542 256665433
No 264
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.83 E-value=0.016 Score=65.86 Aligned_cols=67 Identities=30% Similarity=0.412 Sum_probs=51.1
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH----HHHhhcCceecC---HHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA----LQASMEGYEVTT---MEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a----l~a~~~G~~v~~---Leell~~aDiIi~atg 412 (718)
+.+|+|.|+|+|.-|+++|+.|+..|++|+++|.+|... .....++..+.. ..+....+|+|+..+|
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG 78 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG 78 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC
Confidence 459999999999999999999999999999999877651 122235544432 1256778999998755
No 265
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.82 E-value=0.031 Score=61.55 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=60.0
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc---CCCC-CCcCH
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT---TGCK-DIIRG 419 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a---tgt~-~lI~~ 419 (718)
.+.||+|.|||.|.+|+.+|+.|...|+ +|+++.+..... . .++. ....-+...++|||+.+ |+.. .+++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~--~~~~-~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-P--YRTV-VREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-c--hhhh-hhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 5899999999999999999999999996 699987765320 0 0000 00011345689999986 4333 36777
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.++..++ -++++.+-.
T Consensus 247 ~~~~~~~~-r~~iDLAvP 263 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVP 263 (338)
T ss_pred HHHhhccC-cEEEEecCC
Confidence 77765443 278887764
No 266
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.74 E-value=0.67 Score=51.17 Aligned_cols=169 Identities=11% Similarity=0.004 Sum_probs=106.2
Q ss_pred cchhhHHHHHhhhcccccCCcEEEEEecCCCCh---------hHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHH
Q psy7896 250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGK---------GCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA 320 (718)
Q Consensus 250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~---------~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~ 320 (718)
+.+||+-|.+.--. .--.+.|+....-|. .+..+++.-+++|++...+ ..=.|++++-|.+-+
T Consensus 90 ~kgEsl~Dtarvls----~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaDl~Ti~e--- 161 (335)
T PRK04523 90 ETEEHIREVARVLS----RYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAHALALQE--- 161 (335)
T ss_pred CCCcCHHHHHHHHH----HhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHHHHHHHH---
Confidence 46799877654321 123345555444332 2334455567899988777 766777777666532
Q ss_pred HHHHHHhcccccccchhhhhhhcccc-cCcEEEEEecC-------hhHHHHHHHHHhCCCEEEEEecC----CccHH-H-
Q psy7896 321 ALHLEHLGVKLTKLTEDQAKYLDIML-AGKVAVVAGYG-------DVGKGCAQSLRLFGSRVIVTEID----PINAL-Q- 386 (718)
Q Consensus 321 ~~~l~~lgv~~~~~~~~~~~~~g~eL-~GktVGIIG~G-------~IG~~vA~~l~~fGa~Viv~d~d----p~~al-~- 386 (718)
..| .+ +|++|+|++.| ++.+..+..+..||++|.++-++ |.... .
T Consensus 162 --------------------~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~ 220 (335)
T PRK04523 162 --------------------HFG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDW 220 (335)
T ss_pred --------------------HhC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHH
Confidence 123 36 79999887654 68888888899999999998662 21111 0
Q ss_pred ----HhhcC--ce-ecCHHHHhccCcEEEEcC-------CC------------CCCcCHHHHhcCCCCeEEEEcCC--CC
Q psy7896 387 ----ASMEG--YE-VTTMEEAAKEGGIFVTTT-------GC------------KDIIRGEHFLQMRDDAIVCNIGH--FD 438 (718)
Q Consensus 387 ----a~~~G--~~-v~~Leell~~aDiIi~at-------gt------------~~lI~~e~l~~MK~gAiLIN~GR--gd 438 (718)
+...| +. ..+++++++.+|+|.+.. +. ...+|.+.++..+ ++++.-+.- -+
T Consensus 221 ~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~-~~i~mHcLP~~Rg 299 (335)
T PRK04523 221 AEQNAAESGGSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCLPLRRN 299 (335)
T ss_pred HHHHHHHcCCeEEEEcCHHHHhCCCCEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCCC-CCEEECCCCCCCC
Confidence 11234 22 367999999999999731 11 2348888887664 678887764 23
Q ss_pred ccccHHHHhc
Q psy7896 439 CEIQVSWLDK 448 (718)
Q Consensus 439 ~Eid~~aL~~ 448 (718)
.|++.+-+..
T Consensus 300 ~Ei~~~V~d~ 309 (335)
T PRK04523 300 VKVTDAVMDS 309 (335)
T ss_pred CeeCHHHhCC
Confidence 5777654443
No 267
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.74 E-value=0.051 Score=59.23 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=59.4
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHH-HHh-------hcC--cee---cCHHHHhccCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINAL-QAS-------MEG--YEV---TTMEEAAKEGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al-~a~-------~~G--~~v---~~Leell~~aDiIi~at 411 (718)
.+.++|+|||.|.+|..+|..+...| +++.++|+++..+. ++. ..+ ..+ .+.+ .++.||+|+.+.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45689999999999999999998777 78999998874321 010 011 111 3455 779999999875
Q ss_pred CC---CCC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896 412 GC---KDI------------IR--GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 412 gt---~~l------------I~--~e~l~~MK~gAiLIN~GR 436 (718)
+. .++ +. .+.+....+.++++|++.
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 32 211 11 123445567888888855
No 268
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.033 Score=63.35 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=35.3
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
.++.||+|+|||.|..|..++.-|...|++|+.+-+.|.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 378999999999999999999999999999999876653
No 269
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.74 E-value=0.031 Score=61.25 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=64.7
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCce-ec---C---HHHHhccCcEEEEcCCCCCCc
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYE-VT---T---MEEAAKEGGIFVTTTGCKDII 417 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~-v~---~---Leell~~aDiIi~atgt~~lI 417 (718)
-.|++|.|.|.|.||..+++.++.+|++|++++.++.+..++ ...|.. +. + +.++....|+++-++|....+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHH
Confidence 368999999999999999999999999998876655432222 233442 11 1 223333579999888864433
Q ss_pred CHHHHhcCCCCeEEEEcCCC
Q psy7896 418 RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRg 437 (718)
. +.++.++++..++.+|..
T Consensus 262 ~-~~~~~l~~~G~iv~vG~~ 280 (360)
T PLN02586 262 G-PLLGLLKVNGKLITLGLP 280 (360)
T ss_pred H-HHHHHhcCCcEEEEeCCC
Confidence 3 468899999999999863
No 270
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.74 E-value=0.018 Score=57.92 Aligned_cols=88 Identities=23% Similarity=0.173 Sum_probs=52.0
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc---------------------Ccee-cCHHHHhccCcE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---------------------GYEV-TTMEEAAKEGGI 406 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~---------------------G~~v-~~Leell~~aDi 406 (718)
++|+|||.|.+|...|..+...|.+|+.+|.++.+.. .... .+.+ .+.++.++++|+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~-~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVE-ALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHH-HHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHH-HHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 5899999999999999999999999999999875321 1111 1222 356777889999
Q ss_pred EEEcCCCC----CCcC--------HHHHhcCCCCeEEEEcCCC
Q psy7896 407 FVTTTGCK----DIIR--------GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 407 Ii~atgt~----~lI~--------~e~l~~MK~gAiLIN~GRg 437 (718)
+++|.+|. +..| ....+.++++.++|+-+-.
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 99875442 1111 1223445667777766553
No 271
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.74 E-value=0.031 Score=58.24 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=32.3
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
..|++|.|||.|.+|..+|..++..|.+|+++.+.+
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 468999999999999999999999999999987654
No 272
>PRK12862 malic enzyme; Reviewed
Probab=95.71 E-value=0.045 Score=66.24 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=82.4
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCC------------ccHHHHhhcCceecCHHHHhccCcE
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDP------------INALQASMEGYEVTTMEEAAKEGGI 406 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp------------~~al~a~~~G~~v~~Leell~~aDi 406 (718)
.|..+...+|.|.|.|.-|..+|+.+...|. +++++|+.- .+..-+.. ....+|.|+++.+|+
T Consensus 187 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~--~~~~~l~e~~~~~~v 264 (763)
T PRK12862 187 VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK--TDARTLAEVIEGADV 264 (763)
T ss_pred hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh--cccCCHHHHHcCCCE
Confidence 4678899999999999999999999999999 788887431 11111111 134589999999999
Q ss_pred EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896 407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD 447 (718)
Q Consensus 407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~ 447 (718)
++-+++ .++++++.++.|.+..++.-.+.-..|+..+...
T Consensus 265 ~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~ 304 (763)
T PRK12862 265 FLGLSA-AGVLKPEMVKKMAPRPLIFALANPTPEILPEEAR 304 (763)
T ss_pred EEEcCC-CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHH
Confidence 998877 7999999999999999999999877788775433
No 273
>PRK12861 malic enzyme; Reviewed
Probab=95.68 E-value=0.042 Score=66.21 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=82.1
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCC------------ccHHHHhhcCceecCHHHHhccCcE
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDP------------INALQASMEGYEVTTMEEAAKEGGI 406 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp------------~~al~a~~~G~~v~~Leell~~aDi 406 (718)
.|..+...+|.|.|.|.-|..+++.+...|. +++++|+.- .+..-+.. ....+|.|+++.+|+
T Consensus 183 ~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~--~~~~~L~eai~~adv 260 (764)
T PRK12861 183 VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE--TDARTLAEVIGGADV 260 (764)
T ss_pred hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh--cCCCCHHHHHhcCCE
Confidence 4678889999999999999999999999999 788887322 11111211 234589999999999
Q ss_pred EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896 407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD 447 (718)
Q Consensus 407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~ 447 (718)
++-+++ .++++++.++.|.+..|+.-.+.-..|+.++...
T Consensus 261 liG~S~-~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~ 300 (764)
T PRK12861 261 FLGLSA-GGVLKAEMLKAMAARPLILALANPTPEIFPELAH 300 (764)
T ss_pred EEEcCC-CCCCCHHHHHHhccCCEEEECCCCCccCCHHHHH
Confidence 998876 7999999999999999999998877788776443
No 274
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.67 E-value=0.016 Score=59.78 Aligned_cols=91 Identities=23% Similarity=0.216 Sum_probs=65.3
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCc-ee----cCHHHHhccCcEEEEcCCCCCCc
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGY-EV----TTMEEAAKEGGIFVTTTGCKDII 417 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~-~v----~~Leell~~aDiIi~atgt~~lI 417 (718)
..++||+|.|||.|.+|..=++.+...|++|+++-......+... ..+- .. -..++ +..+++++.+|++. -+
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~-~l 85 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE-EL 85 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH-HH
Confidence 578999999999999999999999999999999865543332221 1111 11 12223 33489998888874 56
Q ss_pred CHHHHhcCCCCeEEEEcCC
Q psy7896 418 RGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GR 436 (718)
|++.+...+.-.++||+.-
T Consensus 86 n~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 86 NERIAKAARERRILVNVVD 104 (210)
T ss_pred HHHHHHHHHHhCCceeccC
Confidence 7777777788789999755
No 275
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.65 E-value=0.05 Score=59.27 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=59.0
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHH---hhcC------ceec-CHHHHhccCcEEEEcCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQA---SMEG------YEVT-TMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a---~~~G------~~v~-~Leell~~aDiIi~atgt 413 (718)
-.+++|+|||.|+||..+|-.+...|. ++.++|++...+... ..+. ..+. +-.+.+++||+|+.+.|.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 467899999999999999999988777 799999866432111 1111 1111 223568999999987542
Q ss_pred ---CCC------------cC--HHHHhcCCCCeEEEEcCCC
Q psy7896 414 ---KDI------------IR--GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ---~~l------------I~--~e~l~~MK~gAiLIN~GRg 437 (718)
.++ +. .+.+..-.+.++++|++..
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP 124 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNP 124 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 111 11 1223333468899998853
No 276
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.64 E-value=0.054 Score=60.55 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=68.9
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-CC--CEEEEEecCCccHHH--Hh---h-cC---ce-ecCHHHHhccCcEEEEcCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-FG--SRVIVTEIDPINALQ--AS---M-EG---YE-VTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-fG--a~Viv~d~dp~~al~--a~---~-~G---~~-v~~Leell~~aDiIi~atgt 413 (718)
.-++++|||.|..++.-++.+.. +. -+|.++++++.++.. .. . .| +. +.+.++++++||||+++|..
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 35899999999999999988765 42 389999998865321 11 1 12 22 35799999999999988642
Q ss_pred -C------CCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896 414 -K------DIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD 447 (718)
Q Consensus 414 -~------~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~ 447 (718)
. -+|..+ .+|+|+.++.+|. .|+|...+.
T Consensus 234 ~~~~~s~~Pv~~~~---~lkpG~hv~~ig~--~eld~~~l~ 269 (379)
T PRK06199 234 ETGDPSTYPYVKRE---WVKPGAFLLMPAA--CRIDEGMEQ 269 (379)
T ss_pred CCCCCCcCcEecHH---HcCCCcEEecCCc--ccCCHHHHh
Confidence 2 566654 5689998888776 477755444
No 277
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.64 E-value=0.032 Score=61.14 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=56.8
Q ss_pred cEEEEEecChhHHHHHHHHHhC-CCEEEE-EecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLF-GSRVIV-TEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMR 426 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Viv-~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK 426 (718)
.+|+|||+|+||+.+++.+... ++++.. +++++..........+...+.++++.+.|++++|+++.-- -......++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-~~~~~~~L~ 82 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-IPEQAPYFA 82 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-HHHHHHHHH
Confidence 5899999999999999988765 788775 6776522222111223345677778889999998765321 233445567
Q ss_pred CCeEEEEc
Q psy7896 427 DDAIVCNI 434 (718)
Q Consensus 427 ~gAiLIN~ 434 (718)
.|.-+|.+
T Consensus 83 aG~NVV~s 90 (324)
T TIGR01921 83 QFANTVDS 90 (324)
T ss_pred cCCCEEEC
Confidence 76666665
No 278
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.62 E-value=0.017 Score=60.13 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=60.4
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--CH-HHHhccCcEEEEcCCCCCCc
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--TM-EEAAKEGGIFVTTTGCKDII 417 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~L-eell~~aDiIi~atgt~~lI 417 (718)
...++|++|.|||.|.||..=++.|..+|++|+++-++....++.. ..| +.+. +. ++-+..+++|+.+|+++ -+
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~v 98 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-KL 98 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-HH
Confidence 4567799999999999999999999999999999965544333322 111 2221 11 23457788888888764 45
Q ss_pred CHHHHhcCCCCeEEEEc
Q psy7896 418 RGEHFLQMRDDAIVCNI 434 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~ 434 (718)
|....+..+.-.+++|+
T Consensus 99 N~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 99 NNKIRKHCDRLYKLYID 115 (223)
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 55555555554455554
No 279
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.60 E-value=0.048 Score=58.39 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=50.0
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh-cC----ce-ec---CHHHHhccCcEEEEcCCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM-EG----YE-VT---TMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~-~G----~~-v~---~Leell~~aDiIi~atgt 413 (718)
.+.||++.|||.|..|++++..|..+|+ +|+++++++.++..... .+ .. +. ++.+.+.++|+||.+|.-
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 4679999999999999999999999998 79999988765432211 01 11 11 123456788999988765
No 280
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.57 E-value=0.028 Score=60.95 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=63.5
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-c--------CHHHHhc------cC----cE
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-T--------TMEEAAK------EG----GI 406 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~--------~Leell~------~a----Di 406 (718)
-.|.+|.|+|.|.||..+++.++.+|++|++++.++.+...+...|... . ++.+.++ .. |+
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~ 244 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWK 244 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCE
Confidence 3589999999999999999999999999999887776543333334321 1 1222222 12 36
Q ss_pred EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
++.++|+...+ ...++.++++..++..|...
T Consensus 245 v~d~~g~~~~~-~~~~~~l~~~G~iv~~G~~~ 275 (349)
T TIGR03201 245 IFECSGSKPGQ-ESALSLLSHGGTLVVVGYTM 275 (349)
T ss_pred EEECCCChHHH-HHHHHHHhcCCeEEEECcCC
Confidence 77787765433 24578889999999988753
No 281
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=95.55 E-value=0.45 Score=53.67 Aligned_cols=120 Identities=21% Similarity=0.194 Sum_probs=82.4
Q ss_pred eEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc--cccCcEEEEEec-----C---hhHHHH
Q psy7896 294 RVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI--MLAGKVAVVAGY-----G---DVGKGC 363 (718)
Q Consensus 294 ~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~--eL~GktVGIIG~-----G---~IG~~v 363 (718)
+|++...+...=.|++++-|.+-+ ..|. .+.|++|+|+|- | ++.+.+
T Consensus 154 PVINa~~~~~HPtQaLaDl~TI~E-----------------------~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl 210 (395)
T PRK07200 154 TLVNLQCDIDHPTQSMADLLHLIE-----------------------HFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGI 210 (395)
T ss_pred eEEECCCCCCCcHHHHHHHHHHHH-----------------------HhCCCcccCCCEEEEEeccccccCCcchHHHHH
Confidence 588877666666777777665532 1232 478999999985 5 567899
Q ss_pred HHHHHhCCCEEEEEecCCc---cHH-H-----HhhcC--ce-ecCHHHHhccCcEEEEcC----C---------------
Q psy7896 364 AQSLRLFGSRVIVTEIDPI---NAL-Q-----ASMEG--YE-VTTMEEAAKEGGIFVTTT----G--------------- 412 (718)
Q Consensus 364 A~~l~~fGa~Viv~d~dp~---~al-~-----a~~~G--~~-v~~Leell~~aDiIi~at----g--------------- 412 (718)
+..+..||++|.++-+... ... + +...| +. ..+++++++.+|+|.+.. +
T Consensus 211 ~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~ 290 (395)
T PRK07200 211 IGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAGDHE 290 (395)
T ss_pred HHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCeeecccccccccccccccch
Confidence 9999999999999754322 111 1 11234 33 358999999999999742 1
Q ss_pred ----------------CCCCcCHHHHhcCCCC-eEEEEcCC
Q psy7896 413 ----------------CKDIIRGEHFLQMRDD-AIVCNIGH 436 (718)
Q Consensus 413 ----------------t~~lI~~e~l~~MK~g-AiLIN~GR 436 (718)
...-||.+.++..|++ +++.-++-
T Consensus 291 ~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcLP 331 (395)
T PRK07200 291 GIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLP 331 (395)
T ss_pred hhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCCC
Confidence 1123788888888885 99998865
No 282
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.51 E-value=0.076 Score=64.09 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=82.4
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCCc---------cHHH-HhhcCceecCHHHHhccCcEEE
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDPI---------NALQ-ASMEGYEVTTMEEAAKEGGIFV 408 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp~---------~al~-a~~~G~~v~~Leell~~aDiIi 408 (718)
.|..+...+|.|.|.|.-|..+|+.+...|. +++++|..-. ...+ ....-....+|.|+++.+|+++
T Consensus 179 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~i 258 (752)
T PRK07232 179 VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFL 258 (752)
T ss_pred hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEE
Confidence 4678889999999999999999999999999 7888874321 1111 1111123458999999999999
Q ss_pred EcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896 409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD 447 (718)
Q Consensus 409 ~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~ 447 (718)
-+++ .++++++.++.|.+..++.-.+.-..|+..+...
T Consensus 259 G~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~ 296 (752)
T PRK07232 259 GLSA-AGVLTPEMVKSMADNPIIFALANPDPEITPEEAK 296 (752)
T ss_pred EcCC-CCCCCHHHHHHhccCCEEEecCCCCccCCHHHHH
Confidence 8876 7999999999999999999999877788875433
No 283
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.034 Score=61.51 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=53.4
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc------eecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY------EVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~------~v~~Leell~~aDiIi~atgt~~lI~~e~ 421 (718)
++||||||.|--|+.++..++.+|.+|++.|.++........+.. ....+.+++..||+|+.=-.+ ++.+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~---V~~~a 77 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFEN---VPAEA 77 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeecc---CCHHH
Confidence 479999999999999999999999999999877754321111111 122477889999998642222 44455
Q ss_pred HhcCCC
Q psy7896 422 FLQMRD 427 (718)
Q Consensus 422 l~~MK~ 427 (718)
++.+..
T Consensus 78 L~~l~~ 83 (375)
T COG0026 78 LEKLAA 83 (375)
T ss_pred HHHHHh
Confidence 555433
No 284
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.49 E-value=0.08 Score=59.82 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=31.9
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 37899999999999999999999999999987654
No 285
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.48 E-value=0.039 Score=59.89 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=62.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHh-CC-CEEEEEecCCccHHHHhhcCceecCHHHHhc--cCcEEEEcCCCC---CCcCH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRL-FG-SRVIVTEIDPINALQASMEGYEVTTMEEAAK--EGGIFVTTTGCK---DIIRG 419 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~-fG-a~Viv~d~dp~~al~a~~~G~~v~~Leell~--~aDiIi~atgt~---~lI~~ 419 (718)
.|.+|.|+|.|.||..+++.++. +| ++|+++++++.+...+...+... ..+++.. ..|+++-++|.. ..+ .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~~~~~~~-~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGRGSQSAI-N 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCCccHHHH-H
Confidence 58999999999999999999986 55 58999988876543332223222 2223322 379999888842 223 3
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.++.++++..++.+|..
T Consensus 241 ~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 241 QIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred HHHHhCcCCcEEEEEeec
Confidence 578899999999998864
No 286
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.47 E-value=0.026 Score=60.90 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=58.7
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhc--------Cc--ee--cCHHHHhccCcEEEEcCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASME--------GY--EV--TTMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~--------G~--~v--~~Leell~~aDiIi~atgt~ 414 (718)
++|+|||.|.+|+.+|..|...|. +|.++|+++.++....++ +. .+ .+. +.++.||+|+.++|..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 479999999999999999998884 799999887653211111 11 11 233 4578999999986642
Q ss_pred ---CC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896 415 ---DI------------IR--GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 415 ---~l------------I~--~e~l~~MK~gAiLIN~GR 436 (718)
++ +. .+.+.+..+.+++++++.
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 11 11 123455577889999885
No 287
>PLN02740 Alcohol dehydrogenase-like
Probab=95.46 E-value=0.037 Score=60.94 Aligned_cols=91 Identities=23% Similarity=0.375 Sum_probs=64.8
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ecC-------HHHHhc-----cCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VTT-------MEEAAK-----EGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~~-------Leell~-----~aDiIi~at 411 (718)
-.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.+ +.+.++ ..|+++.++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 468999999999999999999999999 699988777654333334532 111 222221 479999988
Q ss_pred CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896 412 GCKDIIRGEHFLQMRDD-AIVCNIGHF 437 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~g-AiLIN~GRg 437 (718)
|....+. ..+..++++ ..++.+|..
T Consensus 277 G~~~~~~-~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 277 GNVEVLR-EAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred CChHHHH-HHHHhhhcCCCEEEEEccC
Confidence 8654444 567788886 788888764
No 288
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.45 E-value=0.06 Score=57.94 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=50.9
Q ss_pred cccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896 246 DNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 308 (718)
Q Consensus 246 d~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A 308 (718)
-|...++|..+.......+..++|++++|+|+|.+|+.+|+.|+++|.+|++++.++.+...+
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~ 190 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI 190 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 345567777765555555667899999999999999999999999999999999887665443
No 289
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.45 E-value=0.025 Score=65.92 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=63.3
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----C---HHHH-hccCcEEEEcCCCC--CCc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----T---MEEA-AKEGGIFVTTTGCK--DII 417 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~---Leel-l~~aDiIi~atgt~--~lI 417 (718)
.++.|+|+|++|+.+|+.|+..|.+|++.|.|+.+..++...|+.+. + ++++ ++++|.++.++++. +..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 57899999999999999999999999999999877655555665432 2 2333 46888777665432 110
Q ss_pred CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896 418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE 452 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~ 452 (718)
-......+.+...++-..+ +.-+.+.+++.+.+
T Consensus 498 iv~~~~~~~~~~~iiar~~--~~~~~~~l~~~Gad 530 (558)
T PRK10669 498 IVASAREKRPDIEIIARAH--YDDEVAYITERGAN 530 (558)
T ss_pred HHHHHHHHCCCCeEEEEEC--CHHHHHHHHHcCCC
Confidence 1112334445555554333 22333445554433
No 290
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.44 E-value=0.072 Score=60.44 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=31.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
+++|.|||.|.||..+|..++.+|.+|+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 5899999999999999999999999999987654
No 291
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.43 E-value=0.04 Score=64.25 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=32.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
..|++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 468999999999999999999999999999988665
No 292
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.43 E-value=0.025 Score=61.71 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=34.2
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 303 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~ 303 (718)
+..+++++|||.|+.|..+|..|++.|..|++++..+.
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 45789999999999999999999999999999997654
No 293
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.042 Score=61.86 Aligned_cols=68 Identities=29% Similarity=0.385 Sum_probs=49.8
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH----H-hhcCceec---CHHHHhccCcEEEEcCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ----A-SMEGYEVT---TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~----a-~~~G~~v~---~Leell~~aDiIi~atg 412 (718)
.+.+|+|.|+|.|.+|..+|+.|...|++|+++|.++....+ . ...|..+. ..++.....|+|+.+++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence 467999999999999999999999999999999887532221 1 11243321 23456678999988755
No 294
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.42 E-value=0.095 Score=56.26 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=33.8
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp 381 (718)
.+.||++.|+|.|.+|++++..|...|++ |+++++++
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999996 99999876
No 295
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.033 Score=63.10 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=48.2
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCH-HHHhccCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM-EEAAKEGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~L-eell~~aDiIi~at 411 (718)
++|++|.|+|+|.+|+.+|+.|+..|.+|.++|..+.........|..+... .+-+.++|+||..+
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp 73 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSP 73 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECC
Confidence 6789999999999999999999999999999996543222222345544332 23356799998754
No 296
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.38 E-value=0.058 Score=57.25 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=76.3
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHhC----CC-------EEEEEecCCcc--------H--HHHhhcCce---ecCH
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLF----GS-------RVIVTEIDPIN--------A--LQASMEGYE---VTTM 397 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~f----Ga-------~Viv~d~dp~~--------a--l~a~~~G~~---v~~L 397 (718)
.|..|...++.|+|.|..|..+|+.+... |. ++.++|++..- . .......-. ..+|
T Consensus 19 ~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L 98 (255)
T PF03949_consen 19 TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSL 98 (255)
T ss_dssp HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSH
T ss_pred hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCH
Confidence 46789999999999999999999999877 87 48888764210 1 111111111 2489
Q ss_pred HHHhccC--cEEEEcCCCCCCcCHHHHhcCCC---CeEEEEcCCCCc--cccHHHHhc
Q psy7896 398 EEAAKEG--GIFVTTTGCKDIIRGEHFLQMRD---DAIVCNIGHFDC--EIQVSWLDK 448 (718)
Q Consensus 398 eell~~a--DiIi~atgt~~lI~~e~l~~MK~---gAiLIN~GRgd~--Eid~~aL~~ 448 (718)
.|+++.+ |+++-+++..++|+++.++.|.+ ..++.-.+.-.. |+..+...+
T Consensus 99 ~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~ 156 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYE 156 (255)
T ss_dssp HHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHH
T ss_pred HHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHh
Confidence 9999988 99999988899999999999988 899998888655 777765443
No 297
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.38 E-value=0.033 Score=59.26 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=67.9
Q ss_pred hhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccH-------HHHhhcCceecCHHHHhccCcEEEE-c-
Q psy7896 341 YLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA-------LQASMEGYEVTTMEEAAKEGGIFVT-T- 410 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~a-------l~a~~~G~~v~~Leell~~aDiIi~-a- 410 (718)
..|.+++..||+|+|+ |.||..+|+.+.+.+++....-+|.... +++.+.--.+++++..+.+.|+++- +
T Consensus 160 ~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs 239 (351)
T COG5322 160 QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS 239 (351)
T ss_pred HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee
Confidence 3588999999999997 8999999999999999877766554321 1122212235677777666666553 4
Q ss_pred CCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 411 TGCKDIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 411 tgt~~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
+.+-..|+.++ +|+|+.+++-|+-.
T Consensus 240 ~~~g~~I~pq~---lkpg~~ivD~g~P~ 264 (351)
T COG5322 240 MPKGVEIFPQH---LKPGCLIVDGGYPK 264 (351)
T ss_pred cCCCceechhh---ccCCeEEEcCCcCc
Confidence 34445677755 59999999999863
No 298
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=95.37 E-value=0.066 Score=59.07 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcc-----HHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----CcCHHHHhcCCCCe
Q psy7896 360 GKGCAQSLRLFGSRVIVTEIDPIN-----ALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----IIRGEHFLQMRDDA 429 (718)
Q Consensus 360 G~~vA~~l~~fGa~Viv~d~dp~~-----al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI~~e~l~~MK~gA 429 (718)
|..+|..|..-|.+|+++|+++.. .......|..+ .+..++++++|+|+++..+.. ++ ......++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 889999999999999999987742 11223456654 467888999999999866543 22 24456789999
Q ss_pred EEEEcCCCC
Q psy7896 430 IVCNIGHFD 438 (718)
Q Consensus 430 iLIN~GRgd 438 (718)
+++|++-+.
T Consensus 111 IVId~ST~~ 119 (342)
T PRK12557 111 VICNTCTVS 119 (342)
T ss_pred EEEEecCCC
Confidence 999998764
No 299
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.37 E-value=0.022 Score=57.93 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=34.2
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|.+++|.|||.|.+|..+|+.|...|. +++++|.|.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4789999999999999999999999998 899998874
No 300
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.34 E-value=0.077 Score=59.93 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=32.3
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46999999999999999999999999999998655
No 301
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.33 E-value=0.047 Score=49.74 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=47.3
Q ss_pred EEEEEecChhHHHHHHHHHhC--CCEEE-EEecCCccHHH-HhhcCce-ecCHHHHhc--cCcEEEEcCCC
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLF--GSRVI-VTEIDPINALQ-ASMEGYE-VTTMEEAAK--EGGIFVTTTGC 413 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~f--Ga~Vi-v~d~dp~~al~-a~~~G~~-v~~Leell~--~aDiIi~atgt 413 (718)
+|||||+|.+|+.....+... +.++. ++|++|.+... +...|+. +.++++++. +.|+++.+|.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 799999999999999888766 45654 57888765433 2234544 567999987 68998888766
No 302
>PRK06370 mercuric reductase; Validated
Probab=95.32 E-value=0.096 Score=59.38 Aligned_cols=35 Identities=40% Similarity=0.498 Sum_probs=32.3
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 46999999999999999999999999999998755
No 303
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.30 E-value=0.04 Score=59.54 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=65.2
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHH-HHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTME-EAAKEGGIFVTTTGCKDIIRGEHFL 423 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Le-ell~~aDiIi~atgt~~lI~~e~l~ 423 (718)
-.|.+|.|.|.|.+|...++.++.+|++|++++.++.+...+...|... .+.. +.-+..|+++.+++.... -...++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~-~~~~~~ 242 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGL-VPPALE 242 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHH-HHHHHH
Confidence 3589999999999999999999999999999888776654444556532 2211 111236777766655443 346788
Q ss_pred cCCCCeEEEEcCC
Q psy7896 424 QMRDDAIVCNIGH 436 (718)
Q Consensus 424 ~MK~gAiLIN~GR 436 (718)
.++++..++.+|.
T Consensus 243 ~l~~~G~~v~~G~ 255 (329)
T TIGR02822 243 ALDRGGVLAVAGI 255 (329)
T ss_pred hhCCCcEEEEEec
Confidence 9999999999886
No 304
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.29 E-value=0.038 Score=63.08 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=65.3
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--C-HHHHhccCcEEEEcCCCCCCcC
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--T-MEEAAKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~-Leell~~aDiIi~atgt~~lI~ 418 (718)
.+|+||+|.|||.|.++..=++.|..+|++|+++-++....+... ..| +... + .++.++.+++|+.+|+++ -+|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~-~~n 86 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD-AVN 86 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH-HHh
Confidence 578999999999999999999999999999999854433333222 122 2211 1 235577899998988775 467
Q ss_pred HHHHhcCCCCeEEEEcCC
Q psy7896 419 GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GR 436 (718)
.+.....+...+++|+.-
T Consensus 87 ~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 87 QRVSEAAEARRIFCNVVD 104 (457)
T ss_pred HHHHHHHHHcCcEEEECC
Confidence 666666667778888754
No 305
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.29 E-value=0.15 Score=54.95 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=34.1
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI 382 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~ 382 (718)
..++||++.|+|.|..+++++..+...|+ +|+++++++.
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 34678999999999999999999988997 7999998853
No 306
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.28 E-value=0.053 Score=60.00 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=63.7
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhhcCcee-c---C---HHHHhccCcEEEEcCCCCCCcC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASMEGYEV-T---T---MEEAAKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~~G~~v-~---~---Leell~~aDiIi~atgt~~lI~ 418 (718)
.|++|.|.|.|.||..+++.++.+|++|++++.++.+.. .+...|... . + +.+.....|+++.++|....+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~- 256 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHAL- 256 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHH-
Confidence 689999999999999999999999999998876543322 222334421 1 1 222333479999888765333
Q ss_pred HHHHhcCCCCeEEEEcCCC
Q psy7896 419 GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRg 437 (718)
...++.++++..++.+|..
T Consensus 257 ~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 257 LPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred HHHHHhhcCCCEEEEEccC
Confidence 3567888999999998864
No 307
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.22 E-value=0.05 Score=58.04 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=53.6
Q ss_pred cEEEEEecChhHHHHHHHHHhC---CCE-EEEEecCCccHHHHhhcCce-ecCHHHH-hccCcEEEEcCCCCCCcCHHHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLF---GSR-VIVTEIDPINALQASMEGYE-VTTMEEA-AKEGGIFVTTTGCKDIIRGEHF 422 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~f---Ga~-Viv~d~dp~~al~a~~~G~~-v~~Leel-l~~aDiIi~atgt~~lI~~e~l 422 (718)
++|||||||.||+.+++.+..- +.+ +.++++++.+..... .... +.+++++ ....|+|+.|.+.. .+.+-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~~ 80 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-GRVALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHAE 80 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-ccCcccCCHHHHhhcCCCEEEECCCHH-HHHHHHH
Confidence 5899999999999999988653 244 345666664332222 2233 3469997 57899999987653 2222233
Q ss_pred hcCCC--CeEEEEcCCC
Q psy7896 423 LQMRD--DAIVCNIGHF 437 (718)
Q Consensus 423 ~~MK~--gAiLIN~GRg 437 (718)
..++. +.++..+|-.
T Consensus 81 ~iL~~g~dlvv~SvGAL 97 (267)
T PRK13301 81 GCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHhcCCCEEEEChhHh
Confidence 44443 3444554443
No 308
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.24 Score=53.84 Aligned_cols=183 Identities=22% Similarity=0.227 Sum_probs=107.4
Q ss_pred CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEee-cCchhh
Q psy7896 228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTE-IDPINA 305 (718)
Q Consensus 228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D-~dp~r~ 305 (718)
.|+--|++++++..-+ .-|||+.|-+.-. .--|..+.|+.-...|-.-. ++.--++ +|++.- .....-
T Consensus 70 rLG~~Vv~~~~~~sSs------~KGEtL~DT~~tl---~ayg~D~iViRH~~egaa~~-~a~~~~~~pvINaGDG~~qHP 139 (316)
T COG0540 70 RLGADVVNFSDSESSS------KKGETLADTIRTL---SAYGVDAIVIRHPEEGAARL-LAEFSGVNPVINAGDGSHQHP 139 (316)
T ss_pred HcCCcEEeecCCcccc------cccccHHHHHHHH---HhhCCCEEEEeCccccHHHH-HHHhcCCCceEECCCCCCCCc
Confidence 4666778887765443 1358887766642 22345667777666554321 2222244 354421 122222
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEe---cChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 306 LQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAG---YGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 306 v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG---~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
.|+..+-|.+-+ ..|. +.|++|+|+| +|++.+..++.|..||++|.++-+...
T Consensus 140 TQ~LLDl~TI~~-----------------------~~G~-~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L 195 (316)
T COG0540 140 TQALLDLYTIRE-----------------------EFGR-LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETL 195 (316)
T ss_pred cHHHHHHHHHHH-----------------------HhCC-cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHh
Confidence 334444333211 1233 8999999999 899999999999999999999854322
Q ss_pred cH----HHHh-hcC-c-eecC-HHHHhccCcEEEEc-------CCC--------CCCcCHHHHhc-CCCCeEEEEcCC--
Q psy7896 383 NA----LQAS-MEG-Y-EVTT-MEEAAKEGGIFVTT-------TGC--------KDIIRGEHFLQ-MRDDAIVCNIGH-- 436 (718)
Q Consensus 383 ~a----l~a~-~~G-~-~v~~-Leell~~aDiIi~a-------tgt--------~~lI~~e~l~~-MK~gAiLIN~GR-- 436 (718)
.. .+.. ..| . ...+ .+|+++++||+..+ .+. .+.+.....+. +|+++++.-.+-
T Consensus 196 ~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ER~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP~Pvn 275 (316)
T COG0540 196 LPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHPLPVN 275 (316)
T ss_pred CCchhHHHHHhhcCceEEEecchhhhhccCCEEEeehhhHhhcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECCCCcc
Confidence 22 1111 122 1 2344 45599999999864 111 12244455666 999999998886
Q ss_pred CCccccHH
Q psy7896 437 FDCEIQVS 444 (718)
Q Consensus 437 gd~Eid~~ 444 (718)
-++||+.+
T Consensus 276 R~~EI~~~ 283 (316)
T COG0540 276 RVVEIASE 283 (316)
T ss_pred CCCcCchh
Confidence 34577754
No 309
>KOG0024|consensus
Probab=95.21 E-value=0.041 Score=59.97 Aligned_cols=101 Identities=23% Similarity=0.247 Sum_probs=74.2
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceec-------CHHH---Hh------ccCc
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVT-------TMEE---AA------KEGG 405 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~-------~Lee---ll------~~aD 405 (718)
+.--.|.+|.|+|.|+||......|+++|| +|+++|..+.+...|...|+++. +.++ .+ ...|
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 344579999999999999999999999999 79999988877655666777542 1222 22 2479
Q ss_pred EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHH
Q psy7896 406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVS 444 (718)
Q Consensus 406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~ 444 (718)
+.+.|+|-.-.++. .+...|.+..++-+|-+...+.++
T Consensus 245 ~~~dCsG~~~~~~a-ai~a~r~gGt~vlvg~g~~~~~fp 282 (354)
T KOG0024|consen 245 VTFDCSGAEVTIRA-AIKATRSGGTVVLVGMGAEEIQFP 282 (354)
T ss_pred eEEEccCchHHHHH-HHHHhccCCEEEEeccCCCccccC
Confidence 99999987655553 567778887777777776555544
No 310
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.21 E-value=0.057 Score=62.35 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=31.9
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.|++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 57999999999999999999999999999987544
No 311
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.20 E-value=0.04 Score=59.04 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=64.6
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ecC-----H---HHHhc--cCcEEEEcCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VTT-----M---EEAAK--EGGIFVTTTGC 413 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~~-----L---eell~--~aDiIi~atgt 413 (718)
..|.+|.|+|.|.||..+++.++.+|++ |++++.++.+...+...|.. +.+ . .++.. ..|+++.+++.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~ 241 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN 241 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC
Confidence 3589999999999999999999999999 99988766543333333432 111 1 12222 47999888876
Q ss_pred CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 414 KDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
...+ ...++.++++..++..|..
T Consensus 242 ~~~~-~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 242 TAAR-RLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred HHHH-HHHHHHhhcCCEEEEEcCC
Confidence 5332 3567889999999988864
No 312
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.17 E-value=0.58 Score=51.12 Aligned_cols=152 Identities=13% Similarity=-0.011 Sum_probs=94.3
Q ss_pred cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc-cccC
Q psy7896 270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI-MLAG 348 (718)
Q Consensus 270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~-eL~G 348 (718)
-.+.|+....-+ .+..+++.-.++|++.-.+...=.|+.++-|.+-+ +.|. .+.|
T Consensus 98 ~D~iv~R~~~~~-~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e-----------------------~~g~~~l~g 153 (311)
T PRK14804 98 VSVIMARLKKHE-DLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIAL-----------------------DSPEIPLNQ 153 (311)
T ss_pred CCEEEEeCCChH-HHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHH-----------------------HhCCCCCCC
Confidence 344455443333 34445555667888875555555667666655421 2243 5899
Q ss_pred cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc-H-----HH-HhhcC-ce-ecCHHHHhccCcEEEEcC----CC-
Q psy7896 349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN-A-----LQ-ASMEG-YE-VTTMEEAAKEGGIFVTTT----GC- 413 (718)
Q Consensus 349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~-a-----l~-a~~~G-~~-v~~Leell~~aDiIi~at----gt- 413 (718)
++|++||- +++.+..+..+..||++|.++-+.... . .+ +...| +. ..+++++++.+|+|.+-+ +.
T Consensus 154 ~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~w~~~~~~ 233 (311)
T PRK14804 154 KQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDTWLDMEFF 233 (311)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeeeeEECccc
Confidence 99999998 689999999999999999998543221 1 01 11123 33 368999999999999831 11
Q ss_pred -----------------CCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHh
Q psy7896 414 -----------------KDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLD 447 (718)
Q Consensus 414 -----------------~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~ 447 (718)
..-|+.+.++ ++++++.-++-. +.||+.+-+.
T Consensus 234 ~~~~~~~~~~~r~~~~~~y~v~~elm~--~~~~~vmH~lP~~Rg~Ei~~~V~d 284 (311)
T PRK14804 234 NDPSYADKKKQRMELMMPYQINSSLME--KTNAKVMHDMPIHAGYEITREVVL 284 (311)
T ss_pred CccchHHHHHHHHHhccCCeECHHHHh--CCCCeEeCCCCCCCCceeCHHHhC
Confidence 2246666555 346777777653 3567655443
No 313
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.17 E-value=0.047 Score=59.74 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=64.2
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----CHHHHhc-----cCcEEEEcCCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----TMEEAAK-----EGGIFVTTTGCK 414 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~Leell~-----~aDiIi~atgt~ 414 (718)
.|++|.|.|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +. ++.+.++ ..|+++.++|..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 58999999999999999999999999 699888777654333334432 11 1112111 369999888764
Q ss_pred CCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 415 DIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 415 ~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
..+. ..++.++++..++.+|..
T Consensus 271 ~~~~-~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 271 PALE-TAYEITRRGGTTVTAGLP 292 (371)
T ss_pred HHHH-HHHHHHhcCCEEEEEccC
Confidence 3333 467889999999988753
No 314
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.17 E-value=0.046 Score=60.64 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.0
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..|+.+|.+|++++..+
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999999999987654
No 315
>PRK07574 formate dehydrogenase; Provisional
Probab=95.17 E-value=0.043 Score=61.50 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=106.0
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM 345 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e 345 (718)
.+.|+++.|+|+|.+|+.+|+.|+.+|++|.++|..+.........+...
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~------------------------------ 238 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY------------------------------ 238 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee------------------------------
Confidence 47899999999999999999999999999999986542110000001000
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHH-hc
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHF-LQ 424 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l-~~ 424 (718)
+ ..+...++ .++|++.. -|....-..+-+ ..+-..++.. .+++.++.-.+++.+.+ +.
T Consensus 239 ----------~----~~l~ell~--~aDvV~l~-lPlt~~T~~li~---~~~l~~mk~g-a~lIN~aRG~iVDe~AL~~A 297 (385)
T PRK07574 239 ----------H----VSFDSLVS--VCDVVTIH-CPLHPETEHLFD---ADVLSRMKRG-SYLVNTARGKIVDRDAVVRA 297 (385)
T ss_pred ----------c----CCHHHHhh--cCCEEEEc-CCCCHHHHHHhC---HHHHhcCCCC-cEEEECCCCchhhHHHHHHH
Confidence 0 00112332 35555542 222111000000 0111223433 44455566568888886 66
Q ss_pred CCCCeEEEEcC-CCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccccc-c
Q psy7896 425 MRDDAIVCNIG-HFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLS-T 502 (718)
Q Consensus 425 MK~gAiLIN~G-Rgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y~i-~ 502 (718)
++.|-+---.. -+..|.. ... ..+...|||..++|.+..+.++..+. ...+..|+..+..+.+....|.| +
T Consensus 298 L~sG~i~GAaLDV~~~EPl----p~d--~pL~~~pNvilTPHiag~T~e~~~~~-~~~~~~ni~~~~~G~~~~~~~~~~~ 370 (385)
T PRK07574 298 LESGHLAGYAGDVWFPQPA----PAD--HPWRTMPRNGMTPHISGTTLSAQARY-AAGTREILECFFEGRPIRDEYLIVD 370 (385)
T ss_pred HHhCCccEEEEecCCCCCC----CCC--ChHHhCCCeEECCccccCcHHHHHHH-HHHHHHHHHHHHcCCCCCCCceEec
Confidence 77765432110 1112211 110 11223589999999999998887664 33455788888888777777765 4
Q ss_pred chhhcccchhh
Q psy7896 503 DIKLAEWGRKT 513 (718)
Q Consensus 503 D~~La~~G~~k 513 (718)
.-.|+-.|.++
T Consensus 371 ~~~~~~~~~~~ 381 (385)
T PRK07574 371 GGRLAGTGAHS 381 (385)
T ss_pred CCcccCccccc
Confidence 56676666544
No 316
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.17 E-value=0.1 Score=57.11 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=46.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHH-HH-------hhcC--cee---cCHHHHhccCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINAL-QA-------SMEG--YEV---TTMEEAAKEGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al-~a-------~~~G--~~v---~~Leell~~aDiIi~at 411 (718)
++.++|+|||.|.+|..+|..+...| ++|.++|+++..+. ++ ...+ ..+ .+. +.++.||+|+.+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 34579999999999999999988777 48999999886421 01 0111 122 345 5779999999864
Q ss_pred C
Q psy7896 412 G 412 (718)
Q Consensus 412 g 412 (718)
+
T Consensus 83 g 83 (321)
T PTZ00082 83 G 83 (321)
T ss_pred C
Confidence 3
No 317
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.052 Score=60.94 Aligned_cols=66 Identities=26% Similarity=0.235 Sum_probs=45.9
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH--HhhcCceecCHHHHhccCcEEEEcCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYEVTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~--a~~~G~~v~~Leell~~aDiIi~atgt 413 (718)
..++|.|||.|.+|+.+|+.|+..|.+|+++|.++..... ...+.+ ....+.+.+++|+|+.+++.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~dlvV~s~gi 69 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERY-LENAEEFPEQVDLVVRSPGI 69 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhh-cCCcHHHhcCCCEEEECCCC
Confidence 3478999999999999999999999999999976642111 011111 11233445779999987654
No 318
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.15 E-value=0.052 Score=59.03 Aligned_cols=91 Identities=20% Similarity=0.241 Sum_probs=65.1
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CHHH----Hhc--cCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TMEE----AAK--EGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Lee----ll~--~aDiIi~atg 412 (718)
-.|++|.|.|.|.||..+++.++.+|++ |++++.++.+...+...|.. +. +..+ +.. ..|+++-++|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g 254 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 3589999999999999999999999995 88887776554333334432 11 1211 222 4799999888
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
....++ ..+..++++..++.+|..
T Consensus 255 ~~~~~~-~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 255 RPETYK-QAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CHHHHH-HHHHHhccCCEEEEECCC
Confidence 654443 467888999999999864
No 319
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.15 E-value=0.081 Score=57.08 Aligned_cols=88 Identities=15% Similarity=-0.023 Sum_probs=58.3
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------------cCHHHHhccCcEEEEcCCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------------TTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------------~~Leell~~aDiIi~atgt 413 (718)
-++|+|||.|.||..+|.+|...|.+|+++.+++..+.. ..|... .+..+..+.+|+|++++..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVR--ENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHH--hCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 368999999999999999999999999999887643321 223211 1122345678999998766
Q ss_pred CCCcC--HHHHhcCCCCeEEEEcCCC
Q psy7896 414 KDIIR--GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~lI~--~e~l~~MK~gAiLIN~GRg 437 (718)
..+.. ...-..++++..++..--|
T Consensus 83 ~~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 83 TANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred CChHhHHHHHhhhcCCCCEEEEecCC
Confidence 55432 1122345667777766443
No 320
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.053 Score=60.98 Aligned_cols=67 Identities=25% Similarity=0.282 Sum_probs=47.5
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--H-H-HhhcCceec---CHHHHhcc-CcEEEEcC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--L-Q-ASMEGYEVT---TMEEAAKE-GGIFVTTT 411 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l-~-a~~~G~~v~---~Leell~~-aDiIi~at 411 (718)
++.||++.|+|.|.+|+++|+.|...|++|++.|.++... . . ....|..+. ...+++.. .|+||..+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 3679999999999999999999999999999998754321 1 1 122355432 22344444 89888764
No 321
>PRK06116 glutathione reductase; Validated
Probab=95.13 E-value=0.11 Score=58.46 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=31.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 6899999999999999999999999999987654
No 322
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.12 E-value=0.053 Score=62.02 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=50.2
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-HhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-ASMEGYEVT---TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-a~~~G~~v~---~Leell~~aDiIi~atg 412 (718)
.+.+|+|.|+|+|.+|+++|+.|...|++|+++|.++....+ ....|+.+. ...+.+.++|+||..++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spg 83 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPG 83 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCC
Confidence 578899999999999999999999999999999976543222 122365542 12345678899987643
No 323
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.10 E-value=0.029 Score=61.75 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=34.1
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|++++|.|||.|.+|..+|+.|...|. +++++|.|.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5789999999999999999999999998 888898875
No 324
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.09 E-value=0.054 Score=61.55 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=48.8
Q ss_pred ccCcEEEEEecChhHHH-HHHHHHhCCCEEEEEecCCccHHHH-hhcCceec--CHHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKG-CAQSLRLFGSRVIVTEIDPINALQA-SMEGYEVT--TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~-vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v~--~Leell~~aDiIi~atg 412 (718)
.++|+|.|+|.|..|+. +|+.|+..|++|+++|.++...... ...|+.+. .-.+.+..+|+||..++
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spg 75 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSA 75 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCC
Confidence 46789999999999999 7999999999999999766432221 12355442 12345667999987643
No 325
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.06 E-value=0.039 Score=61.91 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=49.0
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCcee--------cCHHHH-hccCcEEEEcCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYEV--------TTMEEA-AKEGGIFVTTTGC 413 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~v--------~~Leel-l~~aDiIi~atgt 413 (718)
++|.|+|+|++|+.+++.|...|.+|+++|.++........ .|+.+ ..++++ ++++|.++.++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 47999999999999999999999999999988865333222 23322 235555 7789999887665
No 326
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.04 E-value=0.11 Score=58.42 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=80.7
Q ss_pred hhcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCCcc-------------HHHHh-hcCceecCHHHHhcc
Q psy7896 341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDPIN-------------ALQAS-MEGYEVTTMEEAAKE 403 (718)
Q Consensus 341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp~~-------------al~a~-~~G~~v~~Leell~~ 403 (718)
..|..|+..+|.+.|.|.-|-++++.+++.|+ +|+++|+.-.. ...+. ..+.. .. ++.+..
T Consensus 192 ~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~-~~-~~~~~~ 269 (432)
T COG0281 192 LTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER-TL-DLALAG 269 (432)
T ss_pred HhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccc-cc-cccccC
Confidence 45788999999999999999999999999999 58888754211 11110 11111 11 557889
Q ss_pred CcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 404 GGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 404 aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
+|+++-+++. ++++++.++.|.+..++.-.+.-..|+.++...+
T Consensus 270 adv~iG~S~~-G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~ 313 (432)
T COG0281 270 ADVLIGVSGV-GAFTEEMVKEMAKHPIIFALANPTPEITPEDAKE 313 (432)
T ss_pred CCEEEEcCCC-CCcCHHHHHHhccCCEEeecCCCCccCCHHHHhh
Confidence 9999998888 9999999999999999998888777888776554
No 327
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.046 Score=62.45 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=47.3
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH---HhhcCcee---cCHHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ---ASMEGYEV---TTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~---a~~~G~~v---~~Leell~~aDiIi~atg 412 (718)
+.||+|+|+|+|+-|+++|+.|+..|++|+++|.++..... ....+... ..-++.+.+.|+||..++
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Spg 78 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPG 78 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCC
Confidence 46899999999999999999999999999999965432111 11112211 112355678999998644
No 328
>KOG4230|consensus
Probab=94.98 E-value=0.054 Score=62.42 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=67.8
Q ss_pred cccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896 343 DIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421 (718)
Q Consensus 343 g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~ 421 (718)
+..+.||+..|+|--+| |+.++.+|+...+.|+++... ..++.|.+.++|+++.+.|-++++..
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK-------------T~~lae~v~~ADIvIvAiG~PefVKg-- 221 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK-------------TRNLAEKVSRADIVIVAIGQPEFVKG-- 221 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC-------------CccHHHHhccCCEEEEEcCCcceeec--
Confidence 56789999999999985 999999999999999998532 23677888899999999999888876
Q ss_pred HhcCCCCeEEEEcCC
Q psy7896 422 FLQMRDDAIVCNIGH 436 (718)
Q Consensus 422 l~~MK~gAiLIN~GR 436 (718)
+.+|+|+++|++|-
T Consensus 222 -dWiKpGavVIDvGI 235 (935)
T KOG4230|consen 222 -DWIKPGAVVIDVGI 235 (935)
T ss_pred -ccccCCcEEEEccc
Confidence 46799999999986
No 329
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.96 E-value=0.13 Score=55.39 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=47.4
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh---h-cCc--eecCHHHH--hccCcEEEEcCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS---M-EGY--EVTTMEEA--AKEGGIFVTTTG 412 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~---~-~G~--~v~~Leel--l~~aDiIi~atg 412 (718)
...|+++.|+|.|-.+++++..|...|+ +|+++++.+.++.+.. . .+. ....+.++ ..++|+||.+|+
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp 199 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATP 199 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCC
Confidence 4579999999999999999999999996 7999998876643321 1 110 12222222 125888888764
No 330
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.93 E-value=0.14 Score=57.59 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=32.0
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46899999999999999999999999999998654
No 331
>PRK10262 thioredoxin reductase; Provisional
Probab=94.88 E-value=0.076 Score=56.95 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=32.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
..|++|.|||.|.+|..+|..+..+|.+|+++++.+
T Consensus 144 ~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 144 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 468999999999999999999999999999987654
No 332
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.84 E-value=0.076 Score=58.80 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=53.3
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---ecC---HHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---VTT---MEEAAKEGGIFVTTTGCKDIIRGEH 421 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---v~~---Leell~~aDiIi~atgt~~lI~~e~ 421 (718)
.++|||||.|..|+.+++.++.+|.+|+++|.+|........+.+. +.+ +.++++.+|+|+.-.. -++.+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e---~i~~~~ 78 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFE---NVPAEA 78 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcC---CCCHHH
Confidence 3789999999999999999999999999999876542221122221 122 5677889998854322 345566
Q ss_pred HhcCCCC
Q psy7896 422 FLQMRDD 428 (718)
Q Consensus 422 l~~MK~g 428 (718)
++.+...
T Consensus 79 l~~l~~~ 85 (372)
T PRK06019 79 LDALAAR 85 (372)
T ss_pred HHHHhcC
Confidence 6555443
No 333
>KOG0399|consensus
Probab=94.83 E-value=0.051 Score=66.70 Aligned_cols=124 Identities=27% Similarity=0.324 Sum_probs=79.9
Q ss_pred HHHHhhhc-ccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--------hhhhHHHHHHHHHH
Q psy7896 256 VDGLKRAT-DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--------YELDEEVAALHLEH 326 (718)
Q Consensus 256 ~~~i~r~t-~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--------f~L~r~i~~~~l~~ 326 (718)
.+||+.+. .....|++|+|||.||.|+.+|+.|.+.|+.|+||+...... .-++-| +-+.|++..+ ..
T Consensus 1771 ~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g-gll~ygipnmkldk~vv~rrv~ll--~~ 1847 (2142)
T KOG0399|consen 1771 EEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG-GLLMYGIPNMKLDKFVVQRRVDLL--EQ 1847 (2142)
T ss_pred HhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC-ceeeecCCccchhHHHHHHHHHHH--Hh
Confidence 45666433 345799999999999999999999999999999999654321 111112 2222333222 22
Q ss_pred hcccccccc---------hhh---------------------------------------h-------hhhcccccCcEE
Q psy7896 327 LGVKLTKLT---------EDQ---------------------------------------A-------KYLDIMLAGKVA 351 (718)
Q Consensus 327 lgv~~~~~~---------~~~---------------------------------------~-------~~~g~eL~GktV 351 (718)
-|+++-... ..+ + .......+||+|
T Consensus 1848 egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkv 1927 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKV 1927 (2142)
T ss_pred hCceEEeeccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeE
Confidence 233331100 000 0 011345689999
Q ss_pred EEEecChhHHHHHHHHHhCCCE-EEEEecCCc
Q psy7896 352 VVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPI 382 (718)
Q Consensus 352 GIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~ 382 (718)
.|||.|..|..+.-.-.+.||+ |.-++.-|.
T Consensus 1928 ivigggdtg~dcigtsvrhg~~sv~n~ellp~ 1959 (2142)
T KOG0399|consen 1928 IVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQ 1959 (2142)
T ss_pred EEECCCCccccccccchhhccceecceeecCC
Confidence 9999999999999988999995 555665444
No 334
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.81 E-value=0.054 Score=60.67 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=61.2
Q ss_pred cEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhhcC---c--------eecCHHHHhccCcEEEEcCCCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASMEG---Y--------EVTTMEEAAKEGGIFVTTTGCKDI 416 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~~G---~--------~v~~Leell~~aDiIi~atgt~~l 416 (718)
++|.|||.|.||+.+|..|..-| .+|++.++.+.+..++...+ . .+..+.+++++.|+++.+.+-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence 68999999999999999998888 89999999876654443222 1 2234678899999998763321
Q ss_pred cCHHHH-hcCCCCeEEEEcCCC
Q psy7896 417 IRGEHF-LQMRDDAIVCNIGHF 437 (718)
Q Consensus 417 I~~e~l-~~MK~gAiLIN~GRg 437 (718)
++...+ +.++.|.-.++++-.
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccC
Confidence 122333 455677777777654
No 335
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.80 E-value=0.04 Score=59.64 Aligned_cols=64 Identities=27% Similarity=0.360 Sum_probs=45.5
Q ss_pred cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHH-HH--hhcCce--------ecCHHHHhccCcEEEEcCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QA--SMEGYE--------VTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a--~~~G~~--------v~~Leell~~aDiIi~atgt 413 (718)
++|+|||.|.+|..+|..+...| .+|.++|+++.+.. ++ ..+... ..+. +.++.||+++++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 36999999999999999998888 58999998875432 11 111111 1233 568999999997553
No 336
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.79 E-value=0.023 Score=54.65 Aligned_cols=65 Identities=25% Similarity=0.260 Sum_probs=44.2
Q ss_pred cEEEEEec-ChhHHHHHHHHH--hCCCEEEEEecCCccHHH-H-----h--hcCc--e-ecCHHHHhccCcEEEEcCCC
Q psy7896 349 KVAVVAGY-GDVGKGCAQSLR--LFGSRVIVTEIDPINALQ-A-----S--MEGY--E-VTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 349 ktVGIIG~-G~IG~~vA~~l~--~fGa~Viv~d~dp~~al~-a-----~--~~G~--~-v~~Leell~~aDiIi~atgt 413 (718)
.+|+|||. |+||+.+|-.+. +++.++.++|+++.++.. + . ..+. . .....+.+++||+|+.+.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 37999999 999999999885 566689999988543211 0 0 0111 1 12456778888988887654
No 337
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.78 E-value=0.088 Score=59.89 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=31.7
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 6899999999999999999999999999998655
No 338
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.74 E-value=0.027 Score=53.28 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=31.1
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCcc
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPIN 383 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~ 383 (718)
.++|.|+|.|.+|..+|+.|...|+ +++++|.|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 5799999999999999999999999 79999877653
No 339
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.63 E-value=0.061 Score=57.50 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=34.3
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI 382 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~ 382 (718)
.|++++|.|+|.|.+|..+|..|...|. +++++|.|..
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4789999999999999999999999994 8999987754
No 340
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.1 Score=58.95 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=49.2
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-HHHhh---cCceec--C-HHHHhccCcEEEEcCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-LQASM---EGYEVT--T-MEEAAKEGGIFVTTTG 412 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-l~a~~---~G~~v~--~-Leell~~aDiIi~atg 412 (718)
++.+|++.|+|.|.+|+.+|+.|...|++|+++|..+... ..... .|+.+. . -++.+...|+||..++
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spg 76 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPG 76 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCC
Confidence 3578999999999999999999999999999998766432 11111 355431 1 2344568999998644
No 341
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.15 Score=57.38 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=48.6
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-HHHhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-LQASMEGYEVT---TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-l~a~~~G~~v~---~Leell~~aDiIi~atg 412 (718)
+.+|+|.|+|.|..|+..++.|+..|.+|++.|..+... ......|+.+. .-.+.++..|+||..++
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spg 74 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPG 74 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCC
Confidence 568999999999999999999999999999999765432 12222355442 12245677899887643
No 342
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.59 E-value=0.13 Score=56.39 Aligned_cols=195 Identities=20% Similarity=0.245 Sum_probs=111.6
Q ss_pred hcCCccceEEEecCCcccccccccccchhhHH----HHHh--------------hhcccccCCcEEEEEecCCCChhHHH
Q psy7896 225 KENKLGVPAINVNDSVTKSKFDNLYGCRESLV----DGLK--------------RATDIMLAGKVAVVAGYGDVGKGCAQ 286 (718)
Q Consensus 225 ~~g~l~~Pv~~v~ds~~K~~fd~~~G~~es~~----~~i~--------------r~t~~~~~Gk~vvViGyG~vG~~~A~ 286 (718)
...+.++-|.||.+..+.+..|...+.-=++. ++.. ...+..+.||++.|+|.|.||+.+|+
T Consensus 84 aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~ 163 (324)
T COG1052 84 AAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVAR 163 (324)
T ss_pred HHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHH
Confidence 34567889999999999888887766221111 1111 01234578999999999999999999
Q ss_pred HHHhcCCeEEEeecCchhhhhhhh-hhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHH
Q psy7896 287 SLRLFGSRVIVTEIDPINALQASM-EGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQ 365 (718)
Q Consensus 287 aLra~Gv~VtV~D~dp~r~v~Ava-eGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~ 365 (718)
.++.+|.+|..++..+........ ..|.. +-.
T Consensus 164 r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~-----------------------------------------------l~e 196 (324)
T COG1052 164 RLKGFGMKVLYYDRSPNPEAEKELGARYVD-----------------------------------------------LDE 196 (324)
T ss_pred HHhcCCCEEEEECCCCChHHHhhcCceecc-----------------------------------------------HHH
Confidence 999999999999987752211110 00100 113
Q ss_pred HHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhc-cCcEEEEcCCCCCCcCHHHH-hcCCCCeEEEEc-CCCCcccc
Q psy7896 366 SLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK-EGGIFVTTTGCKDIIRGEHF-LQMRDDAIVCNI-GHFDCEIQ 442 (718)
Q Consensus 366 ~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~-~aDiIi~atgt~~lI~~e~l-~~MK~gAiLIN~-GRgd~Eid 442 (718)
.++. +.++... -|.... -....+-+++.+ ....++..++--.+||++.+ +.++.|-+---. =.+..|..
T Consensus 197 ll~~--sDii~l~-~Plt~~-----T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~ 268 (324)
T COG1052 197 LLAE--SDIISLH-CPLTPE-----TRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPA 268 (324)
T ss_pred HHHh--CCEEEEe-CCCChH-----HhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCC
Confidence 3333 2233321 232111 112233344432 23455566776678998775 667776553211 01222332
Q ss_pred HHHHhccccceeeecCCcccCccccchhhHHHHhh
Q psy7896 443 VSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLAT 477 (718)
Q Consensus 443 ~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~ 477 (718)
. .+..+-.....|+|..+||.+..+.|+..++
T Consensus 269 ~---~d~~l~~l~~~~~vvltPHia~at~ea~~~m 300 (324)
T COG1052 269 L---FDHPLLRLDNFPNVVLTPHIASATEEARKAM 300 (324)
T ss_pred C---CChhHhhccCCCCEEEccccccccHHHHHHH
Confidence 1 0111112233477889999999998888775
No 343
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.58 E-value=0.11 Score=58.93 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=31.1
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4789999999999999999999999999987654
No 344
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.58 E-value=0.1 Score=55.75 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=63.7
Q ss_pred ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e------cCHHHHhc-----cCcEEEEcCC
Q psy7896 346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V------TTMEEAAK-----EGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v------~~Leell~-----~aDiIi~atg 412 (718)
-.|.+|.|.| .|.||+.+++.++.+|++|+++...+.+...+...|.. + .++.+.++ ..|+++-+.|
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 3689999999 59999999999999999999887665443222233432 1 12333322 3688888877
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
... + ...++.++++..+++.|..
T Consensus 217 ~~~-~-~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 217 GEF-S-NTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred HHH-H-HHHHHHhCcCcEEEEecch
Confidence 642 3 5678999999999998864
No 345
>PRK04148 hypothetical protein; Provisional
Probab=94.56 E-value=0.068 Score=51.55 Aligned_cols=40 Identities=30% Similarity=0.262 Sum_probs=35.0
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 387 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a 387 (718)
+++++.+||+| -|..+|+.|...|.+|+++|.+|.....+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a 55 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKA 55 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 57899999999 99999999999999999999998743333
No 346
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.55 E-value=0.18 Score=57.02 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=31.4
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 5899999999999999999999999999998654
No 347
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.54 E-value=0.16 Score=55.82 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=32.2
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..|...|.+|+++++.+
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 57899999999999999999999999999998655
No 348
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.54 E-value=0.085 Score=60.59 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=48.3
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc-H---HHHhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN-A---LQASMEGYEVT---TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~-a---l~a~~~G~~v~---~Leell~~aDiIi~atg 412 (718)
+.+++|.|+|.|.+|+.+|+.|+..|.+|.++|..+.. . ++....|..+. ...+.+..+|+|+..++
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~ 78 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPG 78 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCC
Confidence 57899999999999999999999999999999865532 1 22221143331 12455678999988643
No 349
>PLN02827 Alcohol dehydrogenase-like
Probab=94.53 E-value=0.097 Score=57.81 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=63.7
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at 411 (718)
-.|.+|.|+|.|.||..+++.++.+|++ |++++.++.+...+...|.. +. +..+.++ ..|+++.++
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 271 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECV 271 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence 4689999999999999999999999995 77777666543333334432 11 1222222 479999988
Q ss_pred CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896 412 GCKDIIRGEHFLQMRDD-AIVCNIGHF 437 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~g-AiLIN~GRg 437 (718)
|....+. ..+..++++ ..++..|-.
T Consensus 272 G~~~~~~-~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 272 GDTGIAT-TALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred CChHHHH-HHHHhhccCCCEEEEECCc
Confidence 8754443 568888888 888888753
No 350
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.51 E-value=0.083 Score=60.15 Aligned_cols=70 Identities=27% Similarity=0.276 Sum_probs=49.3
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH---H--HHhhcCceecC--HHHHhccCcEEEEcCC
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA---L--QASMEGYEVTT--MEEAAKEGGIFVTTTG 412 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a---l--~a~~~G~~v~~--Leell~~aDiIi~atg 412 (718)
+..+.+++|.|||.|.+|..+|+.|+..|.+|+++|..+... . .....|+.+.. -.+....+|+|+.++|
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~G 87 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPG 87 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCC
Confidence 446789999999999999999999999999999998654211 1 11234654421 1123456899988654
No 351
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.50 E-value=0.079 Score=58.10 Aligned_cols=88 Identities=18% Similarity=0.045 Sum_probs=57.7
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc---------Cc-------eecCHHHHhccCcEEEEcCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---------GY-------EVTTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~---------G~-------~v~~Leell~~aDiIi~atg 412 (718)
++|+|||.|.+|..+|..|..-| .|.++.+++......... ++ ...+++++++.+|+|++++.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 67999999999999999999888 677766665432111111 22 12367788899999999876
Q ss_pred CCCCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDII--RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI--~~e~l~~MK~gAiLIN~GRg 437 (718)
...+- -++.-..++++..++++.-|
T Consensus 87 s~~~~~vl~~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 SHGFRGVLTELAKELRPWVPVVSLVKG 113 (341)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence 54321 11222345777777777554
No 352
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=94.48 E-value=0.089 Score=57.69 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=62.6
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHh----c-cCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAA----K-EGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell----~-~aDiIi~at 411 (718)
-.|.+|.|+|.|.||...++.++.+|+ +|++++.++.+...+...|.. +. ++.+.+ . ..|+++.++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 358999999999999999999999999 799988777654333334432 11 122222 1 479999888
Q ss_pred CCCCCcCHHHHhcCCCC-eEEEEcCC
Q psy7896 412 GCKDIIRGEHFLQMRDD-AIVCNIGH 436 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~g-AiLIN~GR 436 (718)
|....+ .+.++.++++ ..++..|.
T Consensus 264 G~~~~~-~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 264 GNVNVM-RAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCHHHH-HHHHHHhhcCCCeEEEEec
Confidence 764333 3567788775 77777775
No 353
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.45 E-value=0.053 Score=56.10 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.1
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI 382 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~ 382 (718)
.|..++|.|+|+|.+|..+|+.|...|. +++++|.|..
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 5789999999999999999999999999 7888887654
No 354
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=94.40 E-value=0.9 Score=49.45 Aligned_cols=169 Identities=19% Similarity=0.095 Sum_probs=105.5
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG 328 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg 328 (718)
.|.+||+-|.+.--. .--.+.|+....-+ .+...++.-+++|++...+...=.|+.++-|.+-+
T Consensus 77 ~~kgEsl~Dt~~vls----~y~D~iviR~~~~~-~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e----------- 140 (302)
T PRK14805 77 LGKRESVADFAANLS----CWADAIVARVFSHS-TIEQLAEHGSVPVINALCDLYHPCQALADFLTLAE----------- 140 (302)
T ss_pred CCCCcCHHHHHHHHH----HhCCEEEEeCCChh-HHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence 356788887654311 11233444432222 23344555678998887766666777777665421
Q ss_pred ccccccchhhhhhhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccH---HH------HhhcCce---ec
Q psy7896 329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINA---LQ------ASMEGYE---VT 395 (718)
Q Consensus 329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~a---l~------a~~~G~~---v~ 395 (718)
..| .+.|++|++||-+ ++.+..+..+..||++|.++-+..... .. +...|.. ..
T Consensus 141 ------------~~g-~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 141 ------------QFG-DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred ------------HhC-CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 122 4899999999985 477888999999999999975432211 10 1123443 24
Q ss_pred CHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896 396 TMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK 448 (718)
Q Consensus 396 ~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~ 448 (718)
++ ++++.+|+|.+.+ + ...-|+++.++.+|+. ++.-++- -+.|++.+-+..
T Consensus 208 d~-~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~ 276 (302)
T PRK14805 208 DI-EAIEGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDG 276 (302)
T ss_pred CH-HHHCCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCC
Confidence 54 5799999999831 1 1245899999999887 7877765 235777654443
No 355
>PLN02546 glutathione reductase
Probab=94.36 E-value=0.12 Score=60.60 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=32.2
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.||..+|..+..+|.+|+++++.+
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 57999999999999999999999999999987654
No 356
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=94.36 E-value=0.11 Score=56.66 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=63.8
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCcee--c--C---HHHHhccCcEEEEcCCCCCCc
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEV--T--T---MEEAAKEGGIFVTTTGCKDII 417 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v--~--~---Leell~~aDiIi~atgt~~lI 417 (718)
..|.+|.|.|.|.||..+++.++.+|++|++++.++.+...+. ..|... . + +.++....|+++.+.|....+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 258 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPL 258 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHH
Confidence 4689999999999999999999999999988876654332221 234321 1 1 222233469998887754333
Q ss_pred CHHHHhcCCCCeEEEEcCCC
Q psy7896 418 RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRg 437 (718)
...++.++++..++.+|..
T Consensus 259 -~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 259 -EPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred -HHHHHHhccCCEEEEECCC
Confidence 3567889999999998864
No 357
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.32 E-value=0.85 Score=50.42 Aligned_cols=175 Identities=10% Similarity=0.005 Sum_probs=105.8
Q ss_pred ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHL 327 (718)
Q Consensus 249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~l 327 (718)
.|.+||+-|...--.. . -.+.|+.- +.--.+..+++...++|++.-. +...=.|++++-|.+.+ +
T Consensus 84 ~~kgEsl~Dtarvls~-y---~D~IviR~-~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e--------~- 149 (338)
T PRK08192 84 LSKGESLYDTARVLST-Y---SDVIAMRH-PDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQK--------E- 149 (338)
T ss_pred CCCCCCHHHHHHHHHH-c---CCEEEEeC-CchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHH--------H-
Confidence 3557888776543212 1 22344443 3333445555667788988754 35555677777665432 0
Q ss_pred cccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHH-hCCCEEEEEecCCcc---H-HH-HhhcCc--e-ec
Q psy7896 328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLR-LFGSRVIVTEIDPIN---A-LQ-ASMEGY--E-VT 395 (718)
Q Consensus 328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~-~fGa~Viv~d~dp~~---a-l~-a~~~G~--~-v~ 395 (718)
....|..+.|++|++||-+ ++....+..+. -+|++|.++-+.... . .+ +...|. . +.
T Consensus 150 -----------~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 150 -----------LAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred -----------hhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 0001345899999999994 77888887655 459999887543221 1 11 112243 2 35
Q ss_pred CHHHHhccCcEEEEcCC---------------CCCCcCHHHH-hcCCCCeEEEEcCCC-----CccccHHHHhc
Q psy7896 396 TMEEAAKEGGIFVTTTG---------------CKDIIRGEHF-LQMRDDAIVCNIGHF-----DCEIQVSWLDK 448 (718)
Q Consensus 396 ~Leell~~aDiIi~atg---------------t~~lI~~e~l-~~MK~gAiLIN~GRg-----d~Eid~~aL~~ 448 (718)
+++++++.+|||.+... ....++.+.+ ..+|+++++.-+.-. ..||+.+-+..
T Consensus 219 d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r~~Ei~~~V~d~ 292 (338)
T PRK08192 219 QLEGNLDKADILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSH 292 (338)
T ss_pred CHHHHHccCCEEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCCCCCCCCCCcEeCHHHhCC
Confidence 79999999999998411 1245777777 458999999888643 25777654443
No 358
>KOG0022|consensus
Probab=94.31 E-value=0.13 Score=56.15 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=67.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at 411 (718)
-.|.|+.|.|+|.+|.++++-+++.|| +++.+|.+|.+-..+...|.. +. +..|.+. ..|+-+-++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~ 270 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECI 270 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEec
Confidence 379999999999999999999999999 899999998775555555542 22 2333332 467777788
Q ss_pred CCCCCcCHHHHhcCCCC---eEEEEcCCCCcccc
Q psy7896 412 GCKDIIRGEHFLQMRDD---AIVCNIGHFDCEIQ 442 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~g---AiLIN~GRgd~Eid 442 (718)
|+..++. +.|...++| ++++-+.....++.
T Consensus 271 G~~~~m~-~al~s~h~GwG~sv~iGv~~~~~~i~ 303 (375)
T KOG0022|consen 271 GNVSTMR-AALESCHKGWGKSVVIGVAAAGQEIS 303 (375)
T ss_pred CCHHHHH-HHHHHhhcCCCeEEEEEecCCCcccc
Confidence 8876655 566666776 45555544444444
No 359
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.31 E-value=0.11 Score=56.06 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=62.2
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CHHHH---hc--cCc-EEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TMEEA---AK--EGG-IFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Leel---l~--~aD-iIi~atg 412 (718)
-.|++|.|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +. +.+++ .. ..| +++-++|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 3589999999999999999999999997 67777665443222223321 11 12222 22 246 7778888
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
....+. +.++.++++..++..|-.
T Consensus 239 ~~~~~~-~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 239 VPQTVE-LAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CHHHHH-HHHHHhhcCCEEEEEccC
Confidence 654443 577889999999988853
No 360
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.31 E-value=0.14 Score=57.81 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=32.0
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 35899999999999999999999999999998765
No 361
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.28 E-value=0.11 Score=56.25 Aligned_cols=88 Identities=8% Similarity=0.068 Sum_probs=55.9
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--HHHhh------cCc-------eecCHHHHh-ccCcEEEEcCCC
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASM------EGY-------EVTTMEEAA-KEGGIFVTTTGC 413 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l~a~~------~G~-------~v~~Leell-~~aDiIi~atgt 413 (718)
+|+|||.|.+|..+|..|..-|.+|.++++++... +.... .+. ...++++.+ ..+|+|++++..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 69999999999999999999999999998876321 11100 011 113566666 589999988765
Q ss_pred CCCcC-HHHH-h-cCCCCeEEEEcCCC
Q psy7896 414 KDIIR-GEHF-L-QMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~lI~-~e~l-~-~MK~gAiLIN~GRg 437 (718)
..+-. -+.+ . .++++..++...-|
T Consensus 82 ~~~~~~l~~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 82 QQLRTICQQLQDCHLKKNTPILICSKG 108 (326)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEcC
Confidence 44322 0112 2 44556555555433
No 362
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.18 E-value=0.065 Score=55.13 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=33.6
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|+.++|+|||.|.+|..+|+.|...|. +++++|.|.
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4789999999999999999999999999 599998874
No 363
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.16 E-value=0.17 Score=56.72 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=31.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.+++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 47899999999999999999999999999987654
No 364
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.09 E-value=0.14 Score=62.38 Aligned_cols=36 Identities=33% Similarity=0.262 Sum_probs=32.7
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
.++++.|||.|.+|..+|..|+.+|.+|++++..|.
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ 174 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG 174 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc
Confidence 478999999999999999999999999999886653
No 365
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.05 E-value=0.11 Score=56.26 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=56.7
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHH-HHh-------h---cC-cee-cCHHHHhccCcEEEEcCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINAL-QAS-------M---EG-YEV-TTMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al-~a~-------~---~G-~~v-~~Leell~~aDiIi~atgt~ 414 (718)
++|+|||.|.+|..+|..+...|. +|+++|+.+..+. ++. . .+ ... .+.++ +++||+|+++.|+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 579999999999999999988665 8999998654321 110 0 11 122 35666 78999999986532
Q ss_pred ---CC-------cCH-------HHHhcCCCCeEEEEcCCC
Q psy7896 415 ---DI-------IRG-------EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 415 ---~l-------I~~-------e~l~~MK~gAiLIN~GRg 437 (718)
+. .|. +.+....+++++++++--
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP 120 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP 120 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 11 111 223334577888887763
No 366
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.04 E-value=0.24 Score=56.07 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=31.4
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 5899999999999999999999999999998654
No 367
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.12 Score=58.85 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=43.5
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH--HHhh-cCceecCHHHHhccCcEEEEcCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASM-EGYEVTTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al--~a~~-~G~~v~~Leell~~aDiIi~atg 412 (718)
.||+|+|+|+|+-|.++++.|+. |++|+++|..+.... .... ..+.-..-.+.+.+.|+||..+|
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPg 72 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPG 72 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCC
Confidence 58999999999999999999995 999999995433211 1110 11110111345668999987644
No 368
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=94.00 E-value=0.18 Score=56.33 Aligned_cols=91 Identities=25% Similarity=0.350 Sum_probs=64.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEE-EecCCccHHHHhhcCceec------CHHH----Hh--ccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV-TEIDPINALQASMEGYEVT------TMEE----AA--KEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv-~d~dp~~al~a~~~G~~v~------~Lee----ll--~~aDiIi~atg 412 (718)
-.|++|.|.|.|.||..+++.++.+|+++++ .+.++.+...+...|.... ++.+ +. +..|+++.++|
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 4689999999999999999999999998554 5655544333333454221 2222 22 24799999988
Q ss_pred CCC--------------CcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKD--------------IIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~--------------lI~~e~l~~MK~gAiLIN~GRg 437 (718)
... .+ .+.++.++++..++.+|-.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CccccccccccccchHHHH-HHHHHHhhCCCEEEEeeec
Confidence 752 33 4568999999999999875
No 369
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.98 E-value=0.18 Score=62.00 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=32.8
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
.++++.|||.|.+|..+|..|+.+|.+|++++..|.
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 578999999999999999999999999999887653
No 370
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.96 E-value=0.16 Score=55.47 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=63.6
Q ss_pred ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCce-e------cCHHHHhc-----cCcEEEEcC
Q psy7896 346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYE-V------TTMEEAAK-----EGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~-v------~~Leell~-----~aDiIi~at 411 (718)
-.|.+|.|.|. |.||..+++.++.+|++|++++.++.+...+. ..|.. + .++.+.++ ..|+++-+.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 46899999999 99999999999999999998876654432222 23432 1 13333332 368888887
Q ss_pred CCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 412 GCKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
|.. . -...++.++++..++.+|..
T Consensus 237 G~~-~-~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 237 GGD-M-LDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred CHH-H-HHHHHHHhccCCEEEEECcc
Confidence 753 2 24678889999999988853
No 371
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=93.95 E-value=0.15 Score=55.57 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=63.0
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at 411 (718)
-.|.+|.|.|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +. ++.+.++ ..|+++-++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~ 265 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT 265 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 368999999999999999999999999 799988776554333334432 11 1222222 368888887
Q ss_pred CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896 412 GCKDIIRGEHFLQMRDD-AIVCNIGHF 437 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~g-AiLIN~GRg 437 (718)
|....+. ..+..++++ ..++..|..
T Consensus 266 G~~~~~~-~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 266 GNIDAMI-SAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CChHHHH-HHHHHhhcCCCEEEEECcC
Confidence 7543333 457788885 888888764
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.95 E-value=0.11 Score=58.48 Aligned_cols=69 Identities=28% Similarity=0.259 Sum_probs=49.4
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCcee-----cC---HHHH-hccCcEEEEcCCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYEV-----TT---MEEA-AKEGGIFVTTTGC 413 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~v-----~~---Leel-l~~aDiIi~atgt 413 (718)
.+..+++.|+|+|++|+.+++.|...|.+|+++|.+|........ .++.+ .+ |+++ +.++|.++.++++
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 356799999999999999999999999999999999864322221 23322 12 2222 4678888877654
No 373
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.93 E-value=0.22 Score=54.87 Aligned_cols=66 Identities=24% Similarity=0.309 Sum_probs=43.8
Q ss_pred cEEEEEecChhHHHHHHHHHh-CCCEEEE-EecCCccHHH-Hhhc------------------Ccee-cCHHHHhccCcE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRL-FGSRVIV-TEIDPINALQ-ASME------------------GYEV-TTMEEAAKEGGI 406 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~-fGa~Viv-~d~dp~~al~-a~~~------------------G~~v-~~Leell~~aDi 406 (718)
.+|||+|+|+||+.+++.+.. -++++.. ++.+|..... +... ++.+ .++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 379999999999999998865 4677665 4544421110 1111 2222 257788888999
Q ss_pred EEEcCCCC
Q psy7896 407 FVTTTGCK 414 (718)
Q Consensus 407 Ii~atgt~ 414 (718)
++.+|+..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99988763
No 374
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.93 E-value=0.075 Score=58.54 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=34.2
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|..++|.|||.|.+|..+|+.|...|. +++++|.|.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4788999999999999999999999999 899999875
No 375
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=93.92 E-value=0.16 Score=55.55 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=63.2
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHh-----ccCcEEEEc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAA-----KEGGIFVTT 410 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell-----~~aDiIi~a 410 (718)
...|.+|.|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|.. +. ++.+.+ ...|+++.+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 3468999999999999999999999999 798888766543333233431 11 112222 247999888
Q ss_pred CCCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896 411 TGCKDIIRGEHFLQMRDD-AIVCNIGHF 437 (718)
Q Consensus 411 tgt~~lI~~e~l~~MK~g-AiLIN~GRg 437 (718)
+|....+ .+.++.|+++ ..++.+|..
T Consensus 262 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 262 TGNADLM-NEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred CCChHHH-HHHHHhcccCCCEEEEEcCC
Confidence 8754333 3567888775 888888764
No 376
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.85 E-value=0.36 Score=52.63 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=56.3
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------cee---cCHHHHhccCcEEEEcCCC-
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YEV---TTMEEAAKEGGIFVTTTGC- 413 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~v---~~Leell~~aDiIi~atgt- 413 (718)
.+|+|||.|+||..+|-.+...|. ++.++|+++..+.. + ..+. ..+ .+.+ .+++||+|+.+.|.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence 589999999999999998865554 78899986643211 0 0111 122 2444 48999999987542
Q ss_pred --CCC------------cC--HHHHhcCCCCeEEEEcCCC
Q psy7896 414 --KDI------------IR--GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 --~~l------------I~--~e~l~~MK~gAiLIN~GRg 437 (718)
.++ +. .+.+....+.+++++++..
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 122 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP 122 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence 122 11 1334455778899998853
No 377
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.84 E-value=0.17 Score=57.17 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=46.9
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhh---cCceec---CHHHHhccCcEEEEcCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASM---EGYEVT---TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~---~G~~v~---~Leell~~aDiIi~atg 412 (718)
..-+|+|+|+|.+|+.+|+.|+..|++|+++|..+.... .... .|..+. .-.+.+.++|+||..++
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~ 77 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPG 77 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCC
Confidence 356899999999999999999999999999997653211 1121 255442 12345678999987643
No 378
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.84 E-value=0.12 Score=44.47 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.6
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
+|.|||.|.||..+|..++.+|.+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999987764
No 379
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.81 E-value=0.17 Score=55.29 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=62.3
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at 411 (718)
-.|.+|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +. ++.+.+. ..|+++.++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 358999999999999999999999999 699888776554333333432 11 1222221 378998888
Q ss_pred CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896 412 GCKDIIRGEHFLQMRDD-AIVCNIGHF 437 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~g-AiLIN~GRg 437 (718)
|....+. +.++.++++ ..++.+|..
T Consensus 265 g~~~~~~-~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 265 GNVKVMR-AALEACHKGWGTSVIIGVA 290 (368)
T ss_pred CChHHHH-HHHHhhccCCCeEEEEccC
Confidence 7643333 467778775 777777753
No 380
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=93.81 E-value=0.3 Score=44.68 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCEEEEEecCCccHHH-Hhh----cCceec-CHHHHhccCcEEEEcCCCCCC--cCHHHH-hcCCCCeE
Q psy7896 360 GKGCAQSLRLFGSRVIVTEIDPINALQ-ASM----EGYEVT-TMEEAAKEGGIFVTTTGCKDI--IRGEHF-LQMRDDAI 430 (718)
Q Consensus 360 G~~vA~~l~~fGa~Viv~d~dp~~al~-a~~----~G~~v~-~Leell~~aDiIi~atgt~~l--I~~e~l-~~MK~gAi 430 (718)
+..+++.|+..|++|.++| |..... ... .++.+. +++++++.+|.+++++..... ++-+.+ ..|+++.+
T Consensus 19 ~~~l~~~L~~~g~~V~~~D--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYD--PYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE---TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHCCCEEEEEC--CccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCE
Confidence 5678899999999999995 443222 111 356654 799999999999999876544 444444 56888899
Q ss_pred EEEc
Q psy7896 431 VCNI 434 (718)
Q Consensus 431 LIN~ 434 (718)
++++
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9886
No 381
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.80 E-value=0.2 Score=53.62 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=61.3
Q ss_pred CcEEEEEec-ChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh-cCce-e-----cCHHHHh-----ccCcEEEEcCCC
Q psy7896 348 GKVAVVAGY-GDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM-EGYE-V-----TTMEEAA-----KEGGIFVTTTGC 413 (718)
Q Consensus 348 GktVGIIG~-G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~-~G~~-v-----~~Leell-----~~aDiIi~atgt 413 (718)
|++|.|.|. |.+|+.+++.++.+|+ +|+++..++.+...+.. .|.. + .++.+.+ +..|+++.+.+.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 79988766544322211 3432 1 1233322 247888887776
Q ss_pred CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 414 KDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 414 ~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
.. + .+.++.+++++.++..|.
T Consensus 235 ~~-~-~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 235 EI-S-DTVISQMNENSHIILCGQ 255 (345)
T ss_pred HH-H-HHHHHHhccCCEEEEEee
Confidence 43 3 567889999999998874
No 382
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.78 E-value=0.091 Score=55.20 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=34.5
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI 382 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~ 382 (718)
..|+.++|+|||.|.+|..+++.|...|. +++++|.|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35789999999999999999999999998 7888887654
No 383
>KOG0089|consensus
Probab=93.78 E-value=0.14 Score=54.63 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=66.5
Q ss_pred hhhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcC
Q psy7896 340 KYLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 340 ~~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~ 418 (718)
.+.+.++.||++.|+|--+ +|+-+|.+|..-|+.+.=.+..... ....+.....++...+++||++.+.|-+++|+
T Consensus 158 ~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt---i~hr~t~~~~lk~ht~~adivi~a~g~p~li~ 234 (309)
T KOG0089|consen 158 ERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT---IFHRYTSKPQLKHHTRDADIVISAVGIPNLIT 234 (309)
T ss_pred HHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE---EEEcCCCchhHHHHHHhcceeehhcCCCcccc
Confidence 4568889999999999987 5999999999997765432211100 00011111235667789999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCC
Q psy7896 419 GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRg 437 (718)
.+ ..|+|+-++|.|--
T Consensus 235 ~d---~Ik~Ga~vidvgin 250 (309)
T KOG0089|consen 235 SD---MIKPGAAVIDVGIN 250 (309)
T ss_pred cc---eeecCceeEecCCC
Confidence 74 46999999999864
No 384
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.78 E-value=0.24 Score=53.25 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=35.2
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccH
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA 384 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~a 384 (718)
.+.||++.|+|.|-.|++++..|...|+ +|+++++++.++
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka 164 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRA 164 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHH
Confidence 3568999999999999999999999998 788999887654
No 385
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.77 E-value=0.069 Score=53.10 Aligned_cols=43 Identities=35% Similarity=0.563 Sum_probs=36.9
Q ss_pred ccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh
Q psy7896 264 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL 306 (718)
Q Consensus 264 ~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v 306 (718)
...+.|+++.|+|+|.+|+.+|+.|+.+|++|.+++..+....
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 3457899999999999999999999999999999998887553
No 386
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.76 E-value=0.1 Score=55.04 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=45.3
Q ss_pred cEEEEEec-ChhHHHHHHHHHhC-CCEEEE-EecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCC
Q psy7896 349 KVAVVAGY-GDVGKGCAQSLRLF-GSRVIV-TEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 349 ktVGIIG~-G~IG~~vA~~l~~f-Ga~Viv-~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atg 412 (718)
.+|+|+|+ |++|+.+++.+... ++++.. +|+++.........++ .+.+++++++.+|+++.++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998764 687664 7777643221111223 23578999888999997654
No 387
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.71 E-value=0.2 Score=51.42 Aligned_cols=95 Identities=26% Similarity=0.267 Sum_probs=65.8
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc
Q psy7896 265 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344 (718)
Q Consensus 265 ~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~ 344 (718)
+.+.|++++|+|.|.+|..-++.|...|..|+|++.++.........- + +..+.+..+...
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~---------------~----~i~~~~~~~~~~ 65 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQ---------------G----GITWLARCFDAD 65 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHc---------------C----CEEEEeCCCCHH
Confidence 347899999999999999999999999999999976655332211110 0 011112223334
Q ss_pred cccCcEEEEEecCh--hHHHHHHHHHhCCCEEEEEe
Q psy7896 345 MLAGKVAVVAGYGD--VGKGCAQSLRLFGSRVIVTE 378 (718)
Q Consensus 345 eL~GktVGIIG~G~--IG~~vA~~l~~fGa~Viv~d 378 (718)
.+.+..+.|+-.|. +-..+++.++..|.-|-+.|
T Consensus 66 dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 66 ILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred HhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 57788888887777 66788888888887776554
No 388
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.66 E-value=0.11 Score=54.34 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=34.1
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI 382 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~ 382 (718)
.|++++|.|+|.|.+|..+++.|...|. +++++|.|..
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 3678999999999999999999999998 8999987764
No 389
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.66 E-value=0.22 Score=59.24 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
-.|++|.|||.|..|...|..|+..|.+|+++|..+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4699999999999999999999999999999987653
No 390
>PRK08223 hypothetical protein; Validated
Probab=93.62 E-value=0.11 Score=56.02 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=34.1
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI 382 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~ 382 (718)
.|+..+|.|||+|-+|..+|..|.+.|. ++.++|.|..
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 4789999999999999999999999999 7888887754
No 391
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.59 E-value=0.12 Score=57.94 Aligned_cols=88 Identities=23% Similarity=0.225 Sum_probs=58.3
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-------------------HHhhcC-ceecCHHHHhccCcEEE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-------------------QASMEG-YEVTTMEEAAKEGGIFV 408 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-------------------~a~~~G-~~v~~Leell~~aDiIi 408 (718)
.+|+|||+|-||..+|..+...|.+|+.+|+++.+-. ++...| ++..+=-+-++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 7999999999999999999999999999999875311 122223 23322223345899999
Q ss_pred EcCCC-------CCC---cCH-HH-HhcCCCCeEEEEcCC
Q psy7896 409 TTTGC-------KDI---IRG-EH-FLQMRDDAIVCNIGH 436 (718)
Q Consensus 409 ~atgt-------~~l---I~~-e~-l~~MK~gAiLIN~GR 436 (718)
.|-.| .++ .++ +. -..||+|..+|==+-
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 87332 111 221 22 357899988776543
No 392
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.58 E-value=0.1 Score=54.91 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=62.6
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhc---cCcEEEEc--CC--CCCCcCHH
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAK---EGGIFVTT--TG--CKDIIRGE 420 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~---~aDiIi~a--tg--t~~lI~~e 420 (718)
+++|.||+|+.|..+++++..-|.+|++||++|....++..+|.. ..+++|+++ ...+|-+. .+ +..+|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 468999999999999999999999999999998755455555643 457888764 33444332 12 222222 3
Q ss_pred HHhcCCCCeEEEEcCCCC
Q psy7896 421 HFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 421 ~l~~MK~gAiLIN~GRgd 438 (718)
.-..|..|=++|+-|...
T Consensus 80 la~~L~~GDivIDGGNS~ 97 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSN 97 (300)
T ss_pred HHhhcCCCCEEEECCccc
Confidence 345778888999887653
No 393
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.55 E-value=0.31 Score=49.33 Aligned_cols=92 Identities=24% Similarity=0.304 Sum_probs=63.2
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHHH-----hccCcEEEEcCCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEEA-----AKEGGIFVTTTGCK 414 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Leel-----l~~aDiIi~atgt~ 414 (718)
..|++|.|.|.|.+|+.+++.++..|.+|++++.++.+...+...|.. +. +..+. -+..|+++.+.+..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 468999999999999999999999999999998766433222222221 11 11111 14578988876652
Q ss_pred CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 415 DIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 415 ~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
.. -...++.|+++..+++.|..+
T Consensus 213 ~~-~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 ET-LAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred HH-HHHHHHhcccCCEEEEEccCC
Confidence 22 345678899999999988753
No 394
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.54 E-value=0.28 Score=52.99 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=55.8
Q ss_pred EEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHH------HHhhc--C-cee---cCHHHHhccCcEEEEcCCC---
Q psy7896 351 AVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINAL------QASME--G-YEV---TTMEEAAKEGGIFVTTTGC--- 413 (718)
Q Consensus 351 VGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al------~a~~~--G-~~v---~~Leell~~aDiIi~atgt--- 413 (718)
|+|||.|.||..+|-.+...| .++.++|+++.+.. +.... . ..+ .+ .+.++.||+++++.|+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998878 58999998775421 11111 1 111 12 4688999999997553
Q ss_pred CCC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896 414 KDI------------IR--GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 414 ~~l------------I~--~e~l~~MK~gAiLIN~GR 436 (718)
.++ +. .+.+....+.++++|++.
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 121 11 123444557889999885
No 395
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.52 E-value=0.27 Score=55.19 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=59.3
Q ss_pred cccCcEEEEEec----------ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCCC
Q psy7896 345 MLAGKVAVVAGY----------GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 345 eL~GktVGIIG~----------G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atgt 413 (718)
.+.|++|+|+|+ ..-...+++.|...|++|.+||+.-.. .... .+ ...+++++++.+|.++++|..
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~--~~~~-~~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPE--EEVK-GLPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh--hhhh-hcccCCCHHHHHhCCCEEEEecCC
Confidence 589999999997 335789999999999999999643211 1111 11 246888999999999998876
Q ss_pred CCC--cCHHHHhc-CCCCeEEEE
Q psy7896 414 KDI--IRGEHFLQ-MRDDAIVCN 433 (718)
Q Consensus 414 ~~l--I~~e~l~~-MK~gAiLIN 433 (718)
... ++-+.+.. |+. .++++
T Consensus 387 ~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 387 DEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred HHHhccCHHHHHHhcCC-CEEEe
Confidence 433 45555544 443 45655
No 396
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.46 E-value=0.1 Score=54.68 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=34.5
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCcc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPIN 383 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~ 383 (718)
.|++++|.|+|.|.+|..+|+.|...|. +++++|.|...
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 4788999999999999999999999998 78888877643
No 397
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.45 E-value=0.11 Score=53.07 Aligned_cols=42 Identities=33% Similarity=0.443 Sum_probs=37.7
Q ss_pred ccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896 264 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA 305 (718)
Q Consensus 264 ~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~ 305 (718)
+..+.|++++|+|+|.+|..+|+.|.++|++|+++|.++.+.
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~ 64 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAV 64 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 456899999999999999999999999999999999887543
No 398
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.43 E-value=0.24 Score=58.94 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=34.0
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
-.||+|.|||.|..|...|..|+..|.+|+++|..+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3699999999999999999999999999999987763
No 399
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.32 E-value=0.11 Score=57.92 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=33.9
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|.+++|.|+|.|.+|..++..|...|. +++++|.|.
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4789999999999999999999999999 788998773
No 400
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.31 E-value=0.19 Score=53.92 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=44.1
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh--------hcCc--ee---cCHHHHhccCcEEEEcCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS--------MEGY--EV---TTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~--------~~G~--~v---~~Leell~~aDiIi~atg 412 (718)
++|+|||.|.+|..+|..+...|. +|.++|+++....... ..+. .+ .+. +.++.||+|+++.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987654 9999998775421100 0111 11 234 45789999998743
No 401
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.31 E-value=0.092 Score=58.76 Aligned_cols=69 Identities=13% Similarity=0.243 Sum_probs=55.2
Q ss_pred CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec
Q psy7896 228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300 (718)
Q Consensus 228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~ 300 (718)
+-++++.|+.........|+..+ ++=.+.|..+..+.|+++.|+|+|.+|..+|+.|+++|++|.++|.
T Consensus 79 ~~gI~v~napg~na~aVAE~~~~----~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp 147 (378)
T PRK15438 79 QAGIGFSAAPGCNAIAVVEYVFS----SLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP 147 (378)
T ss_pred HCCCEEEECCCcCchHHHHHHHH----HHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 45788999888777777666554 2223445456678999999999999999999999999999999973
No 402
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.26 E-value=0.2 Score=51.79 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=62.8
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcC-c-eecCHH-HHh--ccCcEEEEcCCCCCCcCH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEG-Y-EVTTME-EAA--KEGGIFVTTTGCKDIIRG 419 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G-~-~v~~Le-ell--~~aDiIi~atgt~~lI~~ 419 (718)
-.|.+|.|.|.|.+|+.+++.++.+|++ |++++.++.+...+...| . .+.... ... +..|+++.+.+....+ .
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~-~ 174 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPSAL-E 174 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChHHH-H
Confidence 4689999999999999999999999999 888876654433333334 1 111111 111 2478888776643332 4
Q ss_pred HHHhcCCCCeEEEEcCCC
Q psy7896 420 EHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 420 e~l~~MK~gAiLIN~GRg 437 (718)
+.++.|+++..++++|..
T Consensus 175 ~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 175 TALRLLRDRGRVVLVGWY 192 (277)
T ss_pred HHHHHhcCCcEEEEEecc
Confidence 568889999999998864
No 403
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.24 E-value=0.22 Score=55.51 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=60.0
Q ss_pred CcEEEEEecChhHHHHHHHHHhCC-------CEEEEEecCCcc-------HHHHhh------cCce-------ecCHHHH
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFG-------SRVIVTEIDPIN-------ALQASM------EGYE-------VTTMEEA 400 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fG-------a~Viv~d~dp~~-------al~a~~------~G~~-------v~~Leel 400 (718)
-++|+|||.|.=|.++|..+..-| .+|.++.+++.. .+.... .|+. ..+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999997655 799998877631 111110 1211 2468889
Q ss_pred hccCcEEEEcCCCCCCcCHHHHh------cCCCCeEEEEcCCC
Q psy7896 401 AKEGGIFVTTTGCKDIIRGEHFL------QMRDDAIVCNIGHF 437 (718)
Q Consensus 401 l~~aDiIi~atgt~~lI~~e~l~------~MK~gAiLIN~GRg 437 (718)
++.+|+|+++.....+ .+.++ .+++++++|++.-|
T Consensus 91 v~~aDiIvlAVPsq~l--~~vl~~l~~~~~l~~~~~iIS~aKG 131 (365)
T PTZ00345 91 VEDADLLIFVIPHQFL--ESVLSQIKENNNLKKHARAISLTKG 131 (365)
T ss_pred HhcCCEEEEEcChHHH--HHHHHHhccccccCCCCEEEEEeCC
Confidence 9999999998765433 12222 34557788888766
No 404
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.24 E-value=0.28 Score=56.09 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=33.5
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
-.|++|.|||.|.+|...|..|+..|.+|+++|..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 378999999999999999999999999999998765
No 405
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.18 E-value=0.25 Score=54.54 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=60.5
Q ss_pred EEEEEecChhHHHHHHHHHhCC--------CEEEEEecCC---ccH-HHHh---------hcCc-------eecCHHHHh
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFG--------SRVIVTEIDP---INA-LQAS---------MEGY-------EVTTMEEAA 401 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fG--------a~Viv~d~dp---~~a-l~a~---------~~G~-------~v~~Leell 401 (718)
+|+|||.|+-|.++|..+..-| .+|.++.+++ ... .+.. ..|+ -..++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999997756 8999997632 111 1110 0122 124788999
Q ss_pred ccCcEEEEcCCCCCCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896 402 KEGGIFVTTTGCKDII--RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 402 ~~aDiIi~atgt~~lI--~~e~l~~MK~gAiLIN~GRg 437 (718)
+.+|+|+.+..+..+- -.+.-..++++.++|++.-|
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCC
Confidence 9999999987765441 12222356888899999776
No 406
>PRK05086 malate dehydrogenase; Provisional
Probab=93.17 E-value=0.4 Score=52.19 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=55.4
Q ss_pred cEEEEEec-ChhHHHHHHHHH---hCCCEEEEEecCCccH---HHHhhcC--ce-----ecCHHHHhccCcEEEEcCCCC
Q psy7896 349 KVAVVAGY-GDVGKGCAQSLR---LFGSRVIVTEIDPINA---LQASMEG--YE-----VTTMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~-G~IG~~vA~~l~---~fGa~Viv~d~dp~~a---l~a~~~G--~~-----v~~Leell~~aDiIi~atgt~ 414 (718)
++|+|||. |.||++++..+. +++..+.++|+++... +...... .. ..++.+.++.+|+|+.+.|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998773 4556788888765431 1111101 11 125567889999999987643
Q ss_pred CC--------------cCHHH---HhcCCCCeEEEEcCC
Q psy7896 415 DI--------------IRGEH---FLQMRDDAIVCNIGH 436 (718)
Q Consensus 415 ~l--------------I~~e~---l~~MK~gAiLIN~GR 436 (718)
+- +-.+. +..-.+.+++++++-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 12222 333356778888766
No 407
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.13 E-value=0.72 Score=52.16 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=30.4
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
+|.|||.|..|+.+|+.|...|.+|+++|..+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999997654
No 408
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.12 E-value=0.32 Score=54.55 Aligned_cols=66 Identities=27% Similarity=0.294 Sum_probs=50.0
Q ss_pred ccCcEEEEEecC----------hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--Cce-ecCHHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYG----------DVGKGCAQSLRLFGSRVIVTEIDPINALQASME--GYE-VTTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G----------~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--G~~-v~~Leell~~aDiIi~atg 412 (718)
|+||||||.|+- .-...++.+|+..|++|.+|| |.....+... +.. ..+++++++.||+++++|.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYD--P~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYD--PVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEEC--chhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 999999999974 237889999999999999995 5432222211 233 3579999999999999887
Q ss_pred C
Q psy7896 413 C 413 (718)
Q Consensus 413 t 413 (718)
-
T Consensus 386 w 386 (414)
T COG1004 386 W 386 (414)
T ss_pred H
Confidence 4
No 409
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=93.12 E-value=0.21 Score=54.64 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=44.1
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc---eecC---HHHHhccCcEEEEc
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY---EVTT---MEEAAKEGGIFVTT 410 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~---~v~~---Leell~~aDiIi~a 410 (718)
||||||.|..|+.+++.++.+|.+|+++|.+|........+-+ ...+ +.++++.+|+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5899999999999999999999999999887643221111211 1123 56678899987543
No 410
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.12 E-value=0.46 Score=50.91 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=43.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh-hcCceecCHHHH-hccCcEEEEcCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS-MEGYEVTTMEEA-AKEGGIFVTTTG 412 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~-~~G~~v~~Leel-l~~aDiIi~atg 412 (718)
++++.|+|.|..+++++..|...|+ +|+++++++.++.... ..+.... +++ ...+|+||.+|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp 187 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTP 187 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCc
Confidence 5789999999999999999999998 5999999886543221 1122111 111 234788877764
No 411
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=93.08 E-value=0.34 Score=51.95 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=60.5
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh---ccCcEEEEcCCCCCCc
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA---KEGGIFVTTTGCKDII 417 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell---~~aDiIi~atgt~~lI 417 (718)
.|.+|.|.|.|.+|+.+++.++.+|++|++++.++.+...+...|.. + .++.+.+ +..|+++.+.+....+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~ 242 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAI 242 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHH
Confidence 58999999999999999999999999999987765443222223321 1 1122222 3468888765533222
Q ss_pred CHHHHhcCCCCeEEEEcCCC
Q psy7896 418 RGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 418 ~~e~l~~MK~gAiLIN~GRg 437 (718)
...+..++++..+++.|..
T Consensus 243 -~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 243 -SALVGGLAPRGKLLILGAA 261 (333)
T ss_pred -HHHHHHcccCCEEEEEecC
Confidence 3457788888888888764
No 412
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.08 E-value=0.28 Score=57.88 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=48.6
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---ecC---HHHHhccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---VTT---MEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---v~~---Leell~~aDiIi~atg 412 (718)
+..|+|||||.|..|+.+++.++.+|.+|+++|.+|........+.+. +.+ +.++++++|+++....
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 678999999999999999999999999999999877532111111111 223 4556788998866433
No 413
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.05 E-value=0.31 Score=51.32 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=44.7
Q ss_pred EEEEec-ChhHHHHHHHHHhCC----CEEEEEecCCccHHHH------h-hc--Cce---ecCHHHHhccCcEEEEcCC
Q psy7896 351 AVVAGY-GDVGKGCAQSLRLFG----SRVIVTEIDPINALQA------S-ME--GYE---VTTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 351 VGIIG~-G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a------~-~~--G~~---v~~Leell~~aDiIi~atg 412 (718)
|+|||. |.+|..+|..+...| -++.++|+++.+.... . .. ... ..++.+.+++||+|+.+.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 589999 999999999998777 6899999887542111 0 00 112 1346788999999998743
No 414
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.85 E-value=0.26 Score=55.35 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=45.1
Q ss_pred EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH----Hh--hcCceec--CHHHHhccCcEEEEcCC
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ----AS--MEGYEVT--TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~----a~--~~G~~v~--~Leell~~aDiIi~atg 412 (718)
++.|||.|.+|+++|+.|+..|.+|+++|..+..... .. ..|..+. .-.+.+..+|+||..++
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCC
Confidence 3789999999999999999999999999976542211 11 2365542 11455678999987643
No 415
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.83 E-value=0.33 Score=52.22 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=62.5
Q ss_pred ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCce--e-----cCHHHHh-----ccCcEEEEcC
Q psy7896 346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYE--V-----TTMEEAA-----KEGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~--v-----~~Leell-----~~aDiIi~at 411 (718)
-.|++|.|.|. |.+|+.+++.++.+|++|+++..++.+...... .|.. + .++.+.+ ...|+++-+.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 36899999998 999999999999999999987766544322222 3321 1 1233322 2468888877
Q ss_pred CCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 412 GCKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
|.. . -.+.++.++++..+++.|..
T Consensus 230 g~~-~-~~~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 230 GGK-M-LDAVLLNMNLHGRIAACGMI 253 (338)
T ss_pred CHH-H-HHHHHHHhccCcEEEEeccc
Confidence 753 2 24678889999999988753
No 416
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.79 E-value=0.17 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=28.9
Q ss_pred EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
|.|+|.|.||.-+|.+|+..|.+|.++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998766
No 417
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.79 E-value=0.44 Score=51.21 Aligned_cols=61 Identities=28% Similarity=0.311 Sum_probs=41.8
Q ss_pred EEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHH------H-Hh-hcC--cee---cCHHHHhccCcEEEEcCC
Q psy7896 351 AVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINAL------Q-AS-MEG--YEV---TTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 351 VGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al------~-a~-~~G--~~v---~~Leell~~aDiIi~atg 412 (718)
|+|||.|.+|..+|..+...|. +|+++|+++.... . .. ..+ ..+ .+. +.+++||+|+.+.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999998875554 9999999875421 0 00 011 111 233 45899999998644
No 418
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.73 E-value=0.17 Score=56.43 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=33.7
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|++++|.|||.|.+|..+++.|...|. +++++|.|.
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4789999999999999999999999998 899988773
No 419
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.72 E-value=0.26 Score=56.76 Aligned_cols=89 Identities=18% Similarity=0.113 Sum_probs=59.4
Q ss_pred cEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccHHHH--------------h-h--cC--cee-cCHHHHhccCcE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINALQA--------------S-M--EG--YEV-TTMEEAAKEGGI 406 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~al~a--------------~-~--~G--~~v-~~Leell~~aDi 406 (718)
++|+|||.|.+|..+|..+... |.+|+++|.++.+.... . . .+ ..+ .+.++.++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999865 68899999887542110 0 0 01 222 346778899999
Q ss_pred EEEcCCCCC---------CcC--------HHHHhcCCCCeEEEEcCCC
Q psy7896 407 FVTTTGCKD---------IIR--------GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 407 Ii~atgt~~---------lI~--------~e~l~~MK~gAiLIN~GRg 437 (718)
+++|.+|.- -.+ ++.-+.++++.++|.-+-.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv 129 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 998754331 111 1223456889999876653
No 420
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.71 E-value=0.25 Score=57.62 Aligned_cols=40 Identities=35% Similarity=0.414 Sum_probs=35.9
Q ss_pred ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896 344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN 383 (718)
Q Consensus 344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~ 383 (718)
..+.+|++.|+|.|.+|++++..|...|++|+++++++.+
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~ 414 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYER 414 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 4578999999999999999999999999999999887544
No 421
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.66 E-value=0.25 Score=59.59 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=62.3
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------cee-cCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YEV-TTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~v-~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+..-|.+|+++|+++.....+ ...| ... .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 689999999999999999999999999999887532110 0111 111 234 45789
Q ss_pred CcEEEEcC-CC---CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 404 GGIFVTTT-GC---KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 404 aDiIi~at-gt---~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
+|+|+.+. ++ +.-+-++.-+.++++++|...... +++..|.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~---l~i~~ia~ 438 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST---ISISLLAK 438 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHh
Confidence 99999873 32 212333344677999988654332 44444443
No 422
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.65 E-value=0.098 Score=48.12 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHH----HHhc--cCcEEEEcCCCCCCcCHHHHhcC
Q psy7896 358 DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTME----EAAK--EGGIFVTTTGCKDIIRGEHFLQM 425 (718)
Q Consensus 358 ~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Le----ell~--~aDiIi~atgt~~lI~~e~l~~M 425 (718)
.||..+++.++.+|++|++++.++.+...+...|... .++. ++.. ..|+++.++|+...+. ..++.+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~-~~~~~l 79 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQ-EAIKLL 79 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHH-HHHHHE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHH-HHHHHh
Confidence 3899999999999999999998886654444555321 1222 3333 4899999999654444 678899
Q ss_pred CCCeEEEEcCCCC
Q psy7896 426 RDDAIVCNIGHFD 438 (718)
Q Consensus 426 K~gAiLIN~GRgd 438 (718)
++++.++.+|-..
T Consensus 80 ~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 80 RPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEEEESSTS
T ss_pred ccCCEEEEEEccC
Confidence 9999999998864
No 423
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=92.65 E-value=0.34 Score=52.78 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=55.5
Q ss_pred CcEEEEEecChhHHHHHHHHHh-CCCEEE-EEecCCccH--HHHhhcCcee--cCHHHHhc-----cCcEEEEcCCCCCC
Q psy7896 348 GKVAVVAGYGDVGKGCAQSLRL-FGSRVI-VTEIDPINA--LQASMEGYEV--TTMEEAAK-----EGGIFVTTTGCKDI 416 (718)
Q Consensus 348 GktVGIIG~G~IG~~vA~~l~~-fGa~Vi-v~d~dp~~a--l~a~~~G~~v--~~Leell~-----~aDiIi~atgt~~l 416 (718)
..+|||||.|+||+..+..+.. -++++. ++++||... ..+...|+.. .+.++++. +.|+++.+|++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 4689999999999997776654 466755 578887542 2244456643 47899885 578899888763
Q ss_pred cCHHH-HhcCCCCeEEEEc
Q psy7896 417 IRGEH-FLQMRDDAIVCNI 434 (718)
Q Consensus 417 I~~e~-l~~MK~gAiLIN~ 434 (718)
.-.+. ....+.|..+++-
T Consensus 82 ~H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 82 AHVRHAAKLREAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHHHcCCeEEEC
Confidence 11222 2344666655544
No 424
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.64 E-value=0.24 Score=59.78 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=58.6
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-----------HhhcC-------------cee-cCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-----------ASMEG-------------YEV-TTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-----------a~~~G-------------~~v-~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+..-|.+|+++|+++..... ....| ..+ .++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999988753210 01111 111 244 45689
Q ss_pred CcEEEEc-CCC---CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 404 GGIFVTT-TGC---KDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 404 aDiIi~a-tgt---~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
||+|+.+ +++ +.-+-.+.-+.++++++|.....
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS 429 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS 429 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 9999987 332 22233334456788888765433
No 425
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=92.64 E-value=0.2 Score=46.37 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=51.9
Q ss_pred EEEEEe-cChhHHHHHHHHHhC-CCEEEEE-ecCCc--cHHHHhhcCce---ecCH--HHH-hccCcEEEEcCCCCCCcC
Q psy7896 350 VAVVAG-YGDVGKGCAQSLRLF-GSRVIVT-EIDPI--NALQASMEGYE---VTTM--EEA-AKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 350 tVGIIG-~G~IG~~vA~~l~~f-Ga~Viv~-d~dp~--~al~a~~~G~~---v~~L--eel-l~~aDiIi~atgt~~lI~ 418 (718)
+++|+| .|.+|+.++..+... +.++..+ .+++. +.......... +..+ +++ ..++|+|++++++.....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999998874 7777665 43321 11111111110 1111 222 248999999877642222
Q ss_pred H--HHHhcCCCCeEEEEcCC
Q psy7896 419 G--EHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 419 ~--e~l~~MK~gAiLIN~GR 436 (718)
. .....+++|.++|+++.
T Consensus 81 ~~~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 81 IAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHHHHhhhcCCCEEEECCc
Confidence 1 23455789999999984
No 426
>PRK11579 putative oxidoreductase; Provisional
Probab=92.62 E-value=0.32 Score=53.13 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=43.9
Q ss_pred cEEEEEecChhHHH-HHHHHHh-CCCEEE-EEecCCccHHHHhhcCc-eecCHHHHhc--cCcEEEEcCCC
Q psy7896 349 KVAVVAGYGDVGKG-CAQSLRL-FGSRVI-VTEIDPINALQASMEGY-EVTTMEEAAK--EGGIFVTTTGC 413 (718)
Q Consensus 349 ktVGIIG~G~IG~~-vA~~l~~-fGa~Vi-v~d~dp~~al~a~~~G~-~v~~Leell~--~aDiIi~atgt 413 (718)
.+|||||+|.||+. .+..++. -++++. ++|+++.+.. +...+. .+.+++++++ +.|+|+++|.+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK-ADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH-hhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 48999999999985 4565544 478876 5777764432 111122 3568999996 57999998776
No 427
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.59 E-value=0.81 Score=51.91 Aligned_cols=64 Identities=23% Similarity=0.192 Sum_probs=43.1
Q ss_pred EEEEEecChhHHHHHH---HH---HhCCCEEEEEecCCccHHHHh--------hcC----ce-ecCHHHHhccCcEEEEc
Q psy7896 350 VAVVAGYGDVGKGCAQ---SL---RLFGSRVIVTEIDPINALQAS--------MEG----YE-VTTMEEAAKEGGIFVTT 410 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~---~l---~~fGa~Viv~d~dp~~al~a~--------~~G----~~-v~~Leell~~aDiIi~a 410 (718)
+|+|||.|.+|...+- .+ ..-|.+|.++|+++.+..... ..+ +. ..++.++++.||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998554 33 334669999999985432110 011 11 34678899999999887
Q ss_pred CCC
Q psy7896 411 TGC 413 (718)
Q Consensus 411 tgt 413 (718)
.+.
T Consensus 82 i~~ 84 (423)
T cd05297 82 IQV 84 (423)
T ss_pred eEe
Confidence 543
No 428
>PRK10083 putative oxidoreductase; Provisional
Probab=92.57 E-value=0.33 Score=51.84 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=60.4
Q ss_pred ccCcEEEEEecChhHHHHHHHHHh-CCCE-EEEEecCCccHHHHhhcCce-ec-----CHHHHhc----cCcEEEEcCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRL-FGSR-VIVTEIDPINALQASMEGYE-VT-----TMEEAAK----EGGIFVTTTGC 413 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~-fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Leell~----~aDiIi~atgt 413 (718)
-.|.+|.|.|.|.+|+.+++.++. +|++ |++++.++.+...+...|.. +. ++.+.+. +.|+++.+++.
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~ 238 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH 238 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence 468999999999999999999996 6996 66677665443322233432 11 2333332 24577777764
Q ss_pred CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 414 KDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
...+ .+.++.++++..+++.|..
T Consensus 239 ~~~~-~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 239 PSIL-EEAVTLASPAARIVLMGFS 261 (339)
T ss_pred HHHH-HHHHHHhhcCCEEEEEccC
Confidence 3333 3567888999999988764
No 429
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=92.53 E-value=1.6 Score=47.64 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=53.9
Q ss_pred HHHHHHhcccccCCceEEEeeecc--hhhHHHHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEE
Q psy7896 525 MALRRKYGAQKILKGARIAGCLHM--TVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVY 592 (718)
Q Consensus 525 ~~Lr~~f~~~kpl~G~~i~~~lh~--~~~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~ 592 (718)
..|+++|.. |+|++|++|.-+ .-..-.++..|+.+||+|.++|-..|--.+++...|.+.|+.+.
T Consensus 147 ~TI~~~~G~---~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~ 213 (316)
T COG0540 147 YTIREEFGR---LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVV 213 (316)
T ss_pred HHHHHHhCC---cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEE
Confidence 456666665 999999999999 33444689999999999999999999999999999998885543
No 430
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.48 E-value=0.27 Score=47.87 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=62.5
Q ss_pred ccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCC--CCCcCHHHH
Q psy7896 346 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGC--KDIIRGEHF 422 (718)
Q Consensus 346 L~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt--~~lI~~e~l 422 (718)
..|++|++||+= + +++.++..+.+|.++|.+|....+ ...++.....++++++||+++.+-.| .+.|+ +-+
T Consensus 9 ~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~-~iL 82 (147)
T PF04016_consen 9 GPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGE-EPGDVPDEDAEEILPWADVVIITGSTLVNGTID-DIL 82 (147)
T ss_dssp TTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--S-SCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHH-HHH
T ss_pred cCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCC-CCCcCCHHHHHHHHccCCEEEEEeeeeecCCHH-HHH
Confidence 478999999962 3 678888899999999999853211 11223344678999999998764221 12333 457
Q ss_pred hcCCCCeEEEEcCCCCccccHHHHhcccc
Q psy7896 423 LQMRDDAIVCNIGHFDCEIQVSWLDKNAV 451 (718)
Q Consensus 423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~~l 451 (718)
+..+++..++=.|-.. ..-++.|.+.++
T Consensus 83 ~~~~~~~~vil~GpS~-~~~P~~l~~~Gv 110 (147)
T PF04016_consen 83 ELARNAREVILYGPSA-PLHPEALFDYGV 110 (147)
T ss_dssp HHTTTSSEEEEESCCG-GS-GGGGCCTT-
T ss_pred HhCccCCeEEEEecCc-hhhHHHHHhCCC
Confidence 7788888888888753 344445655443
No 431
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.48 E-value=0.29 Score=54.94 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=62.9
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--------------HHHh-----hcC-ce-ecCHHHHhccCcEE
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--------------LQAS-----MEG-YE-VTTMEEAAKEGGIF 407 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--------------l~a~-----~~G-~~-v~~Leell~~aDiI 407 (718)
++|.|+|.|-+|...+..+..+|.+|+.+|+|+.+- ++.. ..| .. ..+.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 579999999999999999999999999999987541 1111 112 22 24678899999999
Q ss_pred EEcCCCC----CCcC--------HHHHhcCCCCeEEEEcCC
Q psy7896 408 VTTTGCK----DIIR--------GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 408 i~atgt~----~lI~--------~e~l~~MK~gAiLIN~GR 436 (718)
++++||+ +-+| ++..+.++..+++|+=+-
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST 121 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST 121 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence 9986652 2233 223456666688888654
No 432
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=92.36 E-value=0.44 Score=52.47 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=61.4
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----C--HHHHh-----ccCcEEEEc
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----T--MEEAA-----KEGGIFVTT 410 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~--Leell-----~~aDiIi~a 410 (718)
.-.|.+|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +. + ..+.+ +..|+|+.+
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~ 267 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEV 267 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEEC
Confidence 3468999999999999999999999999 799988766543333333421 11 1 22222 247888888
Q ss_pred CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 411 TGCKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 411 tgt~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
++....+.......++++..++..|..
T Consensus 268 ~g~~~~~~~~~~~~~~~~G~~v~~g~~ 294 (373)
T cd08299 268 IGRLDTMKAALASCHEGYGVSVIVGVP 294 (373)
T ss_pred CCCcHHHHHHHHhhccCCCEEEEEccC
Confidence 776444443222334678888888864
No 433
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.35 E-value=0.19 Score=55.75 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=33.5
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|++++|.|||+|.+|..+++.|...|. +++++|.|.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4788999999999999999999999999 788888765
No 434
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=92.33 E-value=0.42 Score=50.80 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=50.9
Q ss_pred cEEEEEecChhHHHHHHHHHhC-CCEEEE-EecCCccH--HHHhhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLF-GSRVIV-TEIDPINA--LQASMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHFL 423 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Viv-~d~dp~~a--l~a~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l~ 423 (718)
.+|||||+|+||+.+++.+... ++++.. ++.+.... .+....+.. +.+++++-.+.|+++.++++... -.-...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~~~ 80 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHVVP 80 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHHHH
Confidence 4799999999999999998765 566443 33332211 111112333 45688874568999999876422 222233
Q ss_pred cCCC--CeEEEEcC
Q psy7896 424 QMRD--DAIVCNIG 435 (718)
Q Consensus 424 ~MK~--gAiLIN~G 435 (718)
.++. ..++.+++
T Consensus 81 aL~aGk~Vvi~s~~ 94 (265)
T PRK13303 81 ILKAGIDCAVISVG 94 (265)
T ss_pred HHHcCCCEEEeChH
Confidence 4444 44444554
No 435
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.31 E-value=0.47 Score=51.22 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=62.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee------cCH----HHHhc--cCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV------TTM----EEAAK--EGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v------~~L----eell~--~aDiIi~atg 412 (718)
-.|++|.|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|... .++ .++.. ..|+++.+.+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCC
Confidence 368999999999999999999999999 7888876654432222223321 112 12222 3799988876
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
....+ .+.++.|+++..++.+|..
T Consensus 251 ~~~~~-~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 251 VQATL-DTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CHHHH-HHHHHhccCCCEEEEEccC
Confidence 53333 3567889999999998864
No 436
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.31 E-value=0.72 Score=50.96 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=70.4
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-cC-----H----HHHhc-cCcEEEEcC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-TT-----M----EEAAK-EGGIFVTTT 411 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-~~-----L----eell~-~aDiIi~at 411 (718)
--.|.+|.|+|+|.||.++.+.++..|+ +++.+|.+|.+...+...|.. + .+ + .++-. -+|+.+.++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~ 262 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEcc
Confidence 3479999999999999999999999999 688899999876666655642 1 11 1 22333 689999999
Q ss_pred CCCCCcCHHHHhcCCCCeEEEEcCCC--CccccHH
Q psy7896 412 GCKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVS 444 (718)
Q Consensus 412 gt~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~ 444 (718)
|+.+.+. ..|+...++...+-+|-. ..++++.
T Consensus 263 G~~~~~~-~al~~~~~~G~~v~iGv~~~~~~i~~~ 296 (366)
T COG1062 263 GNVEVMR-QALEATHRGGTSVIIGVAGAGQEISTR 296 (366)
T ss_pred CCHHHHH-HHHHHHhcCCeEEEEecCCCCceeecC
Confidence 9877554 566666666655555543 3566543
No 437
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.28 E-value=0.24 Score=52.61 Aligned_cols=92 Identities=23% Similarity=0.210 Sum_probs=61.8
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CHH--HH--hccCcEEEEcCCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TME--EA--AKEGGIFVTTTGCK 414 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Le--el--l~~aDiIi~atgt~ 414 (718)
..|.+|.|+|.|.+|+.+++.++.+|++ |++++.++.+.......|.. +. +.. .. -+..|+++.+.+..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~ 237 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP 237 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh
Confidence 4678999999999999999999999998 77777665443222222321 11 111 11 13578988876542
Q ss_pred CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 415 DIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 415 ~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
..-.+.++.|+++..++++|..+
T Consensus 238 -~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 -KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -HHHHHHHHHHhcCCEEEEEecCC
Confidence 23345678889999999988653
No 438
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.25 E-value=0.41 Score=52.60 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=64.5
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--c------Cc------e-ecCHHHHhccCcEEEEcCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--E------GY------E-VTTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~------G~------~-v~~Leell~~aDiIi~atgt 413 (718)
++|.|||.|.=|.++|+.+..-|.+|.++-++|....+... . |. . ..++.++++.+|+|+.+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 57999999999999999999999999999877643211111 1 11 1 24689999999999998776
Q ss_pred CCCcCHHHH----hcCCCCeEEEEcCCC
Q psy7896 414 KDIIRGEHF----LQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~lI~~e~l----~~MK~gAiLIN~GRg 437 (718)
..+ .+.+ ..++++++++++.-|
T Consensus 82 ~~~--r~v~~~l~~~l~~~~~iv~~sKG 107 (329)
T COG0240 82 QAL--REVLRQLKPLLLKDAIIVSATKG 107 (329)
T ss_pred HHH--HHHHHHHhhhccCCCeEEEEecc
Confidence 544 1222 345799999999876
No 439
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.21 E-value=0.15 Score=57.23 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=53.7
Q ss_pred CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec
Q psy7896 228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300 (718)
Q Consensus 228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~ 300 (718)
+-++++.|+.........|+..+ ++=.+.|..+..+.|+++.|+|+|.+|+.+|+.|+++|++|.++|.
T Consensus 79 ~~gI~v~napg~na~aVAE~v~~----~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 79 EAGITWSSAPGCNARGVVDYVLG----SLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred HCCCEEEECCCcChHHHHHHHHH----HHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 45778888877766666665443 2233445556678999999999999999999999999999999975
No 440
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.21 E-value=0.13 Score=44.12 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=31.5
Q ss_pred EEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896 271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN 304 (718)
Q Consensus 271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r 304 (718)
+++|+|.|++|..+|..++.+|..|++++..+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999887774
No 441
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=92.19 E-value=0.2 Score=60.28 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=55.7
Q ss_pred cEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHH-----------hh-------------cCcee-cCHHHHhc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQA-----------SM-------------EGYEV-TTMEEAAK 402 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a-----------~~-------------~G~~v-~~Leell~ 402 (718)
++|+|||.|.+|..+|..+. ..|.+|+++|+++.....+ .. ....+ .++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 68999999999999999887 5899999999887421100 01 11122 234 4678
Q ss_pred cCcEEEEcC-CC---CCCcCHHHHhcCCCCeEEEEc
Q psy7896 403 EGGIFVTTT-GC---KDIIRGEHFLQMRDDAIVCNI 434 (718)
Q Consensus 403 ~aDiIi~at-gt---~~lI~~e~l~~MK~gAiLIN~ 434 (718)
.||+|+.+. ++ +.-+-++.-+.++++++|...
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasn 419 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASN 419 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 999999863 32 112223333567888877643
No 442
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.18 E-value=0.47 Score=51.17 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=63.5
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CH-H---HHh--ccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TM-E---EAA--KEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~L-e---ell--~~aDiIi~atg 412 (718)
-.|++|.|.|.|.||+.+++.++.+|+. |++++.++.+...+...|.. +. ++ + ++. +..|+++.+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence 3589999999999999999999999994 78887766443322233321 11 11 1 222 24788888877
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
....+ .+.++.++++..+++.|..+
T Consensus 245 ~~~~~-~~~~~~l~~~G~~v~~g~~~ 269 (351)
T cd08285 245 GQDTF-EQALKVLKPGGTISNVNYYG 269 (351)
T ss_pred CHHHH-HHHHHHhhcCCEEEEecccC
Confidence 54333 35688899999999987653
No 443
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.16 E-value=0.55 Score=50.46 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=63.5
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC-----H-HHHhccCcEEEEcCCCCCCcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT-----M-EEAAKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~-----L-eell~~aDiIi~atgt~~lI~ 418 (718)
-.|.+|.|.|.|.+|+.+++.++.+|++|++++.++.+...+...|.. +.+ . .+.-+..|+++.+.+... ..
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~-~~ 246 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH-DL 246 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc-hH
Confidence 358899999999999999999999999999987765443222223332 111 1 112345788888877642 23
Q ss_pred HHHHhcCCCCeEEEEcCCC
Q psy7896 419 GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GRg 437 (718)
.+.++.++++..++++|..
T Consensus 247 ~~~~~~l~~~G~~v~~g~~ 265 (337)
T cd05283 247 DPYLSLLKPGGTLVLVGAP 265 (337)
T ss_pred HHHHHHhcCCCEEEEEecc
Confidence 5668889999999988864
No 444
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.13 E-value=0.47 Score=50.18 Aligned_cols=89 Identities=25% Similarity=0.284 Sum_probs=60.7
Q ss_pred ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh-----ccCcEEEEcCCC
Q psy7896 346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA-----KEGGIFVTTTGC 413 (718)
Q Consensus 346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell-----~~aDiIi~atgt 413 (718)
-.|.+|.|.| .|.+|+.+++.++.+|++|+++..++.+.......|.. + .++.+.+ +..|+++-+.+.
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~ 221 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG 221 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH
Confidence 3689999999 59999999999999999999887665443222223431 1 1222222 236888877665
Q ss_pred CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 414 KDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 414 ~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
. . ..+.++.++++..++++|.
T Consensus 222 ~-~-~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 222 E-F-SSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred H-H-HHHHHHhhccCCEEEEEcc
Confidence 3 2 2466888899999998875
No 445
>PRK12742 oxidoreductase; Provisional
Probab=92.12 E-value=0.72 Score=46.43 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=30.6
Q ss_pred cccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEec
Q psy7896 345 MLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEI 379 (718)
Q Consensus 345 eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~ 379 (718)
.+.||++.|.|. |.||+.+|+.+...|++|++..+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 367999999996 78999999999999999987643
No 446
>KOG0068|consensus
Probab=92.11 E-value=0.21 Score=54.85 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=32.9
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec
Q psy7896 265 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300 (718)
Q Consensus 265 ~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~ 300 (718)
.-+.||.+.|+|+|.+|..+|..++.+|..|+.+|.
T Consensus 142 ~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dp 177 (406)
T KOG0068|consen 142 WELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDP 177 (406)
T ss_pred eEEeccEEEEeecccchHHHHHHHHhcCceEEeecC
Confidence 357999999999999999999999999999988774
No 447
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.11 E-value=0.49 Score=47.17 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=29.2
Q ss_pred EEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 350 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 350 tVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
+|+|||.|.+|..+++.|...|. +++++|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999999 599998775
No 448
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.04 E-value=0.56 Score=53.01 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=52.3
Q ss_pred cccccCcEEEEEec----------ChhHHHHHHHHHhCC-CEEEEEecCCccHHHH-hhcCceecCHHHHhccCcEEEEc
Q psy7896 343 DIMLAGKVAVVAGY----------GDVGKGCAQSLRLFG-SRVIVTEIDPINALQA-SMEGYEVTTMEEAAKEGGIFVTT 410 (718)
Q Consensus 343 g~eL~GktVGIIG~----------G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a-~~~G~~v~~Leell~~aDiIi~a 410 (718)
+.++.|++|+|+|+ ..-...+++.|...| ++|.+||+.- ..... ........+++++++.+|.++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~-~~~~~~~~~~~~~~~~~~~~~~ad~vvi~ 393 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNI-HQLPKKLDGLVTLVSLDEALATADVLVML 393 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCC-CchhhhccCceeeCCHHHHHhCCCEEEEC
Confidence 56689999999997 335789999999996 9999996431 11111 11233456899999999999998
Q ss_pred CCCC
Q psy7896 411 TGCK 414 (718)
Q Consensus 411 tgt~ 414 (718)
|+..
T Consensus 394 t~~~ 397 (415)
T PRK11064 394 VDHS 397 (415)
T ss_pred CCCH
Confidence 8764
No 449
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=92.03 E-value=0.58 Score=51.13 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=63.1
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-----cCHHHHh-----ccCcEEEEcCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-----TTMEEAA-----KEGGIFVTTTGC 413 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-----~~Leell-----~~aDiIi~atgt 413 (718)
-.|++|.|.|.|.+|..+++.++.+|+ .|++++.++.+...+...|.. + .++.+.+ +..|+++.+.|.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~ 264 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGV 264 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCC
Confidence 358999999999999999999999999 588887766543322222321 1 1222222 247888888775
Q ss_pred CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 414 KDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
...+ .+.++.+++++.++..|..
T Consensus 265 ~~~~-~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 265 PAVI-EQAVDALAPRGTLALVGAP 287 (365)
T ss_pred cHHH-HHHHHHhccCCEEEEeCcC
Confidence 4444 3568889999999988764
No 450
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.03 E-value=0.33 Score=56.74 Aligned_cols=37 Identities=35% Similarity=0.428 Sum_probs=33.7
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
.-.|++|.|||.|.+|..+|..|+.+|++|+++|..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999998654
No 451
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.03 E-value=0.29 Score=54.12 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=43.9
Q ss_pred EEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhh----cCcee--------cCHHHHhccCcEEEEcCCC
Q psy7896 351 AVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASM----EGYEV--------TTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 351 VGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~----~G~~v--------~~Leell~~aDiIi~atgt 413 (718)
|+|+|+|.||+.+++.|...+- +|++.++++.+...... ..+.. .++.++++++|+|+.+.+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 7899999999999999987764 89999998876433221 12221 1366789999999987653
No 452
>PLN03139 formate dehydrogenase; Provisional
Probab=92.03 E-value=6.3 Score=44.47 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=57.2
Q ss_pred HHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHH
Q psy7896 365 QSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVS 444 (718)
Q Consensus 365 ~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~ 444 (718)
+.+...|.++++++..+... ..+.+.++++|++++......-++++.++.+++=-++...|.|-+-+|.+
T Consensus 69 ~~l~~~g~~~v~~~~~~~~~----------~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~ 138 (386)
T PLN03139 69 DWLESQGHQYIVTDDKEGPD----------CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLP 138 (386)
T ss_pred HHHHhcCCeEEEeCCCCCCH----------HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHH
Confidence 67788899988874221110 13456788999988754333458999999998888888999887779998
Q ss_pred HHhccccceee
Q psy7896 445 WLDKNAVEKVN 455 (718)
Q Consensus 445 aL~~~~l~~~~ 455 (718)
++.+.++.+..
T Consensus 139 aa~~~gI~V~n 149 (386)
T PLN03139 139 AAAAAGLTVAE 149 (386)
T ss_pred HHHHCCeEEEE
Confidence 87776554443
No 453
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.00 E-value=0.59 Score=51.22 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=55.4
Q ss_pred cEEEEEec-ChhHHHHHHHHHhCC-------CEEEEEecCCccH-HHH----hhcC-------c-eecCHHHHhccCcEE
Q psy7896 349 KVAVVAGY-GDVGKGCAQSLRLFG-------SRVIVTEIDPINA-LQA----SMEG-------Y-EVTTMEEAAKEGGIF 407 (718)
Q Consensus 349 ktVGIIG~-G~IG~~vA~~l~~fG-------a~Viv~d~dp~~a-l~a----~~~G-------~-~v~~Leell~~aDiI 407 (718)
-+|+|+|. |.||+.++..|...+ .+|.++|+++... .+. ..+. . ...++.+.++.+|+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 36999999 999999999987644 4899999855320 111 0111 0 123566889999999
Q ss_pred EEcCCCC---CC-------cCH-------HHHhcC-CCCeEEEEcCC
Q psy7896 408 VTTTGCK---DI-------IRG-------EHFLQM-RDDAIVCNIGH 436 (718)
Q Consensus 408 i~atgt~---~l-------I~~-------e~l~~M-K~gAiLIN~GR 436 (718)
+.+.|.. +. .|. +.+... ++++++++++.
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9764421 11 111 234444 56888888874
No 454
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=91.99 E-value=0.7 Score=49.28 Aligned_cols=89 Identities=21% Similarity=0.171 Sum_probs=61.5
Q ss_pred cCcEEEEE--ecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHH----Hh--ccCcEEEEcCC
Q psy7896 347 AGKVAVVA--GYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEE----AA--KEGGIFVTTTG 412 (718)
Q Consensus 347 ~GktVGII--G~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Lee----ll--~~aDiIi~atg 412 (718)
.+.++.|+ |.|.+|+.+++.++.+|++|++++.++.+...+...|.. + .++.+ +. +..|+++.+++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g 221 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG 221 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence 56667675 889999999999999999999887766544333333432 1 12222 22 24799988887
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
.... ...+..++++..++..|..
T Consensus 222 ~~~~--~~~~~~l~~~G~~v~~g~~ 244 (324)
T cd08291 222 GGLT--GQILLAMPYGSTLYVYGYL 244 (324)
T ss_pred cHHH--HHHHHhhCCCCEEEEEEec
Confidence 6533 3468889999999988753
No 455
>PRK13529 malate dehydrogenase; Provisional
Probab=91.97 E-value=0.82 Score=53.56 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=78.2
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHh----CCC-------EEEEEecCCc-----------cHHHHhhc-Cc------
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRL----FGS-------RVIVTEIDPI-----------NALQASME-GY------ 392 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~----fGa-------~Viv~d~dp~-----------~al~a~~~-G~------ 392 (718)
.|..|...++.|+|.|..|..+|+.+.. .|. ++.++|..-. +..-+... ..
T Consensus 289 ~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~ 368 (563)
T PRK13529 289 TGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTE 368 (563)
T ss_pred hCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccc
Confidence 4678899999999999999999999876 687 7888775421 00111110 00
Q ss_pred -eecCHHHHhccC--cEEEEcCCCCCCcCHHHHhcCCC---CeEEEEcCCCCc--cccHHHH
Q psy7896 393 -EVTTMEEAAKEG--GIFVTTTGCKDIIRGEHFLQMRD---DAIVCNIGHFDC--EIQVSWL 446 (718)
Q Consensus 393 -~v~~Leell~~a--DiIi~atgt~~lI~~e~l~~MK~---gAiLIN~GRgd~--Eid~~aL 446 (718)
...+|.|+++.. |+++-+++..++++++.++.|.+ ..|+.-.+.-.. |+..+..
T Consensus 369 ~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a 430 (563)
T PRK13529 369 GDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDL 430 (563)
T ss_pred cCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHH
Confidence 124799999988 99999888789999999999987 888888887644 7776543
No 456
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.95 E-value=0.25 Score=59.86 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=58.6
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------cee-cCHHHHhcc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YEV-TTMEEAAKE 403 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~v-~~Leell~~ 403 (718)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+ ...| ... .++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 689999999999999999999999999999887531110 0111 111 234 35689
Q ss_pred CcEEEEc-CCC---CCCcCHHHHhcCCCCeEEE-EcCC
Q psy7896 404 GGIFVTT-TGC---KDIIRGEHFLQMRDDAIVC-NIGH 436 (718)
Q Consensus 404 aDiIi~a-tgt---~~lI~~e~l~~MK~gAiLI-N~GR 436 (718)
||+|+.+ .++ +.-+-.+.-+.++++++|. |++.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 9999976 332 2223334446789999876 5554
No 457
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.92 E-value=0.32 Score=45.71 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=42.2
Q ss_pred EEEEEec-ChhHHHHHHHHHh-CCCEEE-EEecCCccH----H-HH---hhcCce-ecCHHHHhccCcEEEEcC
Q psy7896 350 VAVVAGY-GDVGKGCAQSLRL-FGSRVI-VTEIDPINA----L-QA---SMEGYE-VTTMEEAAKEGGIFVTTT 411 (718)
Q Consensus 350 tVGIIG~-G~IG~~vA~~l~~-fGa~Vi-v~d~dp~~a----l-~a---~~~G~~-v~~Leell~~aDiIi~at 411 (718)
+|+|+|+ |++|+.+++.+.. -|+++. ++++.+... . +. ...|+. ..++++++.++|+++-.|
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 9999999999987 778755 466665110 0 00 112333 357999999999999776
No 458
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=91.87 E-value=0.64 Score=54.57 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=78.1
Q ss_pred hcccccCcEEEEEecChhHHHHHHHHHh-----CCC-------EEEEEecCCc---------cHHH--HhhcCceecCHH
Q psy7896 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRL-----FGS-------RVIVTEIDPI---------NALQ--ASMEGYEVTTME 398 (718)
Q Consensus 342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~-----fGa-------~Viv~d~dp~---------~al~--a~~~G~~v~~Le 398 (718)
.+..|...+|.|+|.|.-|..+|+.+.. .|. ++.++|.+-. ...+ -..+.-...+|.
T Consensus 315 ~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~ 394 (581)
T PLN03129 315 TGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLL 394 (581)
T ss_pred hCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHH
Confidence 4678899999999999999999998876 466 6777765421 1100 111222346899
Q ss_pred HHhcc--CcEEEEcCCCCCCcCHHHHhcCC---CCeEEEEcCCCC--ccccHHHH
Q psy7896 399 EAAKE--GGIFVTTTGCKDIIRGEHFLQMR---DDAIVCNIGHFD--CEIQVSWL 446 (718)
Q Consensus 399 ell~~--aDiIi~atgt~~lI~~e~l~~MK---~gAiLIN~GRgd--~Eid~~aL 446 (718)
|+++. .|+++-+++..++|+++.++.|. +..|+.-.+.-. .|+..+..
T Consensus 395 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a 449 (581)
T PLN03129 395 EAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEA 449 (581)
T ss_pred HHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHH
Confidence 99998 99999988877999999999996 778888877754 57766533
No 459
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.85 E-value=0.48 Score=46.01 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=45.8
Q ss_pred EEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------cCHHHHhccCcEEEEcCC
Q psy7896 351 AVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------TTMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 351 VGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------~~Leell~~aDiIi~atg 412 (718)
|.|+|. |.||+.+++.|...|.+|++.-+++.+..+ ..+.++ .++.++++.+|.|+.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 678995 999999999999999999999888775433 233322 235677889999988754
No 460
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.82 E-value=2.4 Score=46.16 Aligned_cols=171 Identities=19% Similarity=0.156 Sum_probs=105.1
Q ss_pred ccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy7896 247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH 326 (718)
Q Consensus 247 ~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~ 326 (718)
...|.+||+-|--.-. +.+..+ |.-+++-=..+...++--+++|.+-=+|...-.|.+++-+.+.
T Consensus 81 ~Qlgr~Esi~DTArVL-sr~~D~----I~~R~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~---------- 145 (310)
T COG0078 81 SQLGRGESIKDTARVL-SRMVDA----IMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIK---------- 145 (310)
T ss_pred cccCCCCcHHHHHHHH-Hhhhhe----EEEecccHHHHHHHHHhCCCceEcccccccCcHHHHHHHHHHH----------
Confidence 4568888876533321 112222 2223333345555667777899876555555555555544332
Q ss_pred hcccccccchhhhhhhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc---cH-----HH-HhhcC--cee
Q psy7896 327 LGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI---NA-----LQ-ASMEG--YEV 394 (718)
Q Consensus 327 lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~---~a-----l~-a~~~G--~~v 394 (718)
++.|. ++|+++.-+|-|+ ++..+...+..||++|.+.-+... .. .+ +...| +.+
T Consensus 146 -------------E~~g~-l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~ 211 (310)
T COG0078 146 -------------EHFGS-LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL 211 (310)
T ss_pred -------------HhcCc-ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE
Confidence 22333 8999999999885 899999999999999999643222 11 11 11224 333
Q ss_pred -cCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcCCCCeEEEEc--CCCCccccHHHH
Q psy7896 395 -TTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQMRDDAIVCNI--GHFDCEIQVSWL 446 (718)
Q Consensus 395 -~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~MK~gAiLIN~--GRgd~Eid~~aL 446 (718)
.+.+++++.+|||.+-+ | ...-+|.+.++.-++++++.-| ++-..|+.-+-+
T Consensus 212 t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~ 283 (310)
T COG0078 212 TEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVF 283 (310)
T ss_pred ecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHh
Confidence 47999999999999731 1 1145888888888889988877 322245543433
No 461
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.80 E-value=0.41 Score=53.89 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=42.1
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHh--ccCcEEEEcCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAA--KEGGIFVTTTG 412 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell--~~aDiIi~atg 412 (718)
++|.|+|+|..|+++|+.|+ .|++|++.|..+..... ...|..+.+ ++.+ .++|+|+..++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~-~~~gi~~~~-~~~~~~~~~d~vv~sp~ 63 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHK-DEEGNLLLP-SNDFDPNKSDLEIPSPG 63 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccch-hhcCCEEec-HHHcCcCCCCEEEECCC
Confidence 36899999999999999999 99999999965432211 112554432 2233 46898887643
No 462
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=91.79 E-value=0.45 Score=51.56 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=62.3
Q ss_pred cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----C-------HHHHh--ccCcEEEEc
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----T-------MEEAA--KEGGIFVTT 410 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~-------Leell--~~aDiIi~a 410 (718)
.|++|.|.|.|.+|+.+++.++.+|+ +|++++..+.+...+...|.. +. + +.++. +..|+++.+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 68999999999999999999999999 899887665443222223431 11 1 11122 246888887
Q ss_pred CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 411 TGCKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 411 tgt~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
.+....+ .+.++.|+++..++.+|..
T Consensus 257 ~g~~~~~-~~~~~~l~~~G~~v~~g~~ 282 (361)
T cd08231 257 SGHPAAV-PEGLELLRRGGTYVLVGSV 282 (361)
T ss_pred CCChHHH-HHHHHHhccCCEEEEEcCC
Confidence 7653333 3568889999999988864
No 463
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.57 E-value=0.28 Score=56.92 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=40.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG 312 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG 312 (718)
..|.+|+|+|.|++|+.+++.++.+|..|+++|.++.+..++...|
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG 208 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG 208 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 4699999999999999999999999999999999999875544433
No 464
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.56 E-value=0.58 Score=55.87 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=33.2
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp 381 (718)
-.+|+|.|||.|..|...|..|+..|.+|+++|..+
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 368999999999999999999999999999998765
No 465
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=91.52 E-value=0.41 Score=50.69 Aligned_cols=90 Identities=22% Similarity=0.175 Sum_probs=58.9
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHh--ccCcEEEEcCCCCCCcCHHHH
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAA--KEGGIFVTTTGCKDIIRGEHF 422 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell--~~aDiIi~atgt~~lI~~e~l 422 (718)
..|.+|.|.|.|.+|+.+++.++.+|++|+++..++.+...+...|... .+..+.. +..|+++.+.|....+ ...+
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~-~~~~ 232 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGL-ELAL 232 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHH-HHHH
Confidence 4689999999999999999999999999988876654433222334322 1121111 2468887776653222 2446
Q ss_pred hcCCCCeEEEEcCC
Q psy7896 423 LQMRDDAIVCNIGH 436 (718)
Q Consensus 423 ~~MK~gAiLIN~GR 436 (718)
+.++++..++..+.
T Consensus 233 ~~l~~~g~~v~~~~ 246 (319)
T cd08242 233 RLVRPRGTVVLKST 246 (319)
T ss_pred HHhhcCCEEEEEcc
Confidence 67788777776543
No 466
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=91.51 E-value=0.26 Score=50.41 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=45.0
Q ss_pred cCcEEEEEecChhHHHHHHHH--HhCCCEEEE-EecCCccHHHHhhcCcee---cCHHHHhcc--CcEEEEcCCC
Q psy7896 347 AGKVAVVAGYGDVGKGCAQSL--RLFGSRVIV-TEIDPINALQASMEGYEV---TTMEEAAKE--GGIFVTTTGC 413 (718)
Q Consensus 347 ~GktVGIIG~G~IG~~vA~~l--~~fGa~Viv-~d~dp~~al~a~~~G~~v---~~Leell~~--aDiIi~atgt 413 (718)
..++|+|||+|.+|+.+++.+ ...|.+++. +|.+|.+... ...|+.+ .++++++++ .|+++.++..
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~-~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~ 156 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT-KIGGIPVYHIDELEEVVKENDIEIGILTVPA 156 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC-EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence 457899999999999999863 467888775 7777644311 1134333 346677754 8988887654
No 467
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.50 E-value=0.25 Score=54.11 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=45.8
Q ss_pred ccCcEEEEEec-ChhHHHHHHHHH--hCCCEEEEEecCCccHHHHh--hc---CceecC------HHHHhccCcEEEEcC
Q psy7896 346 LAGKVAVVAGY-GDVGKGCAQSLR--LFGSRVIVTEIDPINALQAS--ME---GYEVTT------MEEAAKEGGIFVTTT 411 (718)
Q Consensus 346 L~GktVGIIG~-G~IG~~vA~~l~--~fGa~Viv~d~dp~~al~a~--~~---G~~v~~------Leell~~aDiIi~at 411 (718)
++.++|+|||. |+||..+|..+. ++.-++.++|++.... ++. .+ ...+.. ..+.++.+|+|+.+.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 46679999999 999999999998 4555899999843221 110 11 122221 257899999999876
Q ss_pred CC
Q psy7896 412 GC 413 (718)
Q Consensus 412 gt 413 (718)
|.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 54
No 468
>PLN00106 malate dehydrogenase
Probab=91.46 E-value=0.25 Score=54.24 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=57.2
Q ss_pred cCcEEEEEec-ChhHHHHHHHHH--hCCCEEEEEecCCccH--HH--HhhcCcee------cCHHHHhccCcEEEEcCCC
Q psy7896 347 AGKVAVVAGY-GDVGKGCAQSLR--LFGSRVIVTEIDPINA--LQ--ASMEGYEV------TTMEEAAKEGGIFVTTTGC 413 (718)
Q Consensus 347 ~GktVGIIG~-G~IG~~vA~~l~--~fGa~Viv~d~dp~~a--l~--a~~~G~~v------~~Leell~~aDiIi~atgt 413 (718)
..++|+|||. |+||..+|..+. ++.-++.++|+++... ++ .......+ .++.+.++.+|+|+.+.|.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3479999999 999999999997 4445899999877211 11 00001111 2346889999999987542
Q ss_pred C---CC-----------cCHH---HHhcCCCCeEEEEcCCC
Q psy7896 414 K---DI-----------IRGE---HFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~---~l-----------I~~e---~l~~MK~gAiLIN~GRg 437 (718)
. +. |-.+ .+....+.+++++++.-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP 137 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP 137 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 1 11 1112 23344577888887764
No 469
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.44 E-value=0.65 Score=48.46 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=63.6
Q ss_pred cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--ecCHHHHh-ccCcEEEEcCCCCCCcCHHHH
Q psy7896 347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--VTTMEEAA-KEGGIFVTTTGCKDIIRGEHF 422 (718)
Q Consensus 347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--v~~Leell-~~aDiIi~atgt~~lI~~e~l 422 (718)
.|.+|.|.|. |.+|+.+++.++.+|++|+++..++.+...+...|.. +...+++. +..|+++.+.+... ..+.+
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~~~--~~~~~ 209 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGGPQ--LARAL 209 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCcHH--HHHHH
Confidence 5899999999 8999999999999999999987665443222223431 11111221 24788888877653 35678
Q ss_pred hcCCCCeEEEEcCCC
Q psy7896 423 LQMRDDAIVCNIGHF 437 (718)
Q Consensus 423 ~~MK~gAiLIN~GRg 437 (718)
+.|+.+..++++|..
T Consensus 210 ~~l~~~G~~v~~g~~ 224 (305)
T cd08270 210 ELLAPGGTVVSVGSS 224 (305)
T ss_pred HHhcCCCEEEEEecc
Confidence 999999999999864
No 470
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.43 E-value=0.5 Score=51.81 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=54.3
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCC-------EEEEEecCCcc--HH-HH--hhcC-------ceec-CHHHHhccCcEEE
Q psy7896 350 VAVVAGY-GDVGKGCAQSLRLFGS-------RVIVTEIDPIN--AL-QA--SMEG-------YEVT-TMEEAAKEGGIFV 408 (718)
Q Consensus 350 tVGIIG~-G~IG~~vA~~l~~fGa-------~Viv~d~dp~~--al-~a--~~~G-------~~v~-~Leell~~aDiIi 408 (718)
+|+|||. |+||..+|..+...|. ++.++|+.+.. +. ++ ..+. +... +..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999998876554 48888875432 10 00 0111 1111 4468899999999
Q ss_pred EcCCCC---CC------------cC--HHHHhcC-CCCeEEEEcCC
Q psy7896 409 TTTGCK---DI------------IR--GEHFLQM-RDDAIVCNIGH 436 (718)
Q Consensus 409 ~atgt~---~l------------I~--~e~l~~M-K~gAiLIN~GR 436 (718)
.+.|.. +. +. .+.+... ++.+++++++.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 875421 11 10 1234445 57899999874
No 471
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.34 E-value=0.39 Score=57.90 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=61.9
Q ss_pred cEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHH-----------hhcC-------------cee-cCHHHHhc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQA-----------SMEG-------------YEV-TTMEEAAK 402 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~v-~~Leell~ 402 (718)
++|+|||.|.+|..+|..+. ..|.+|+++|.++.....+ ...| ..+ .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 78999999999999999987 7899999999887421110 0111 111 234 4578
Q ss_pred cCcEEEEcC-CC---CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896 403 EGGIFVTTT-GC---KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK 448 (718)
Q Consensus 403 ~aDiIi~at-gt---~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~ 448 (718)
.||+|+-+. ++ +.-+-++.-+.++++++|.....+ +++..|.+
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~---l~i~~la~ 435 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS---LPIGQIAA 435 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHH
Confidence 999999873 32 112333334567999988755443 44444443
No 472
>PRK07411 hypothetical protein; Validated
Probab=91.33 E-value=0.27 Score=55.20 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.1
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|+..+|+|||+|.+|..+|+.|...|. +++++|.|.
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4788999999999999999999999998 688887664
No 473
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=91.28 E-value=0.66 Score=48.98 Aligned_cols=88 Identities=20% Similarity=0.144 Sum_probs=60.8
Q ss_pred cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC---H-HHHh-----ccCcEEEEcCCCCC
Q psy7896 347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT---M-EEAA-----KEGGIFVTTTGCKD 415 (718)
Q Consensus 347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~---L-eell-----~~aDiIi~atgt~~ 415 (718)
.|++|.|+|. |.+|+.+++.++.+|++|++++.++.+...+...|.. +.+ . .+.+ +..|+++.+.+..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~- 224 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK- 224 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-
Confidence 4789999999 9999999999999999999887666543222223331 111 1 1111 2368888777763
Q ss_pred CcCHHHHhcCCCCeEEEEcCC
Q psy7896 416 IIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 416 lI~~e~l~~MK~gAiLIN~GR 436 (718)
. ..+.+..|+++..++..|.
T Consensus 225 ~-~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 225 T-LAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred H-HHHHHHHhhcCCEEEEEee
Confidence 2 2456888999999998875
No 474
>PRK04148 hypothetical protein; Provisional
Probab=91.23 E-value=2.7 Score=40.73 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896 268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA 305 (718)
Q Consensus 268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~ 305 (718)
.++++++||.| .|..+|..|.+.|+.|+.+|.++...
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV 52 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAV 52 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHH
Confidence 56889999999 99999999999999999999999854
No 475
>PLN02602 lactate dehydrogenase
Probab=91.22 E-value=0.5 Score=52.41 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=55.8
Q ss_pred cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------ceec---CHHHHhccCcEEEEcCCC-
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YEVT---TMEEAAKEGGIFVTTTGC- 413 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~v~---~Leell~~aDiIi~atgt- 413 (718)
++|+|||.|+||..+|-.+...|. ++.++|+++..+.. + ..+. ..+. +. +.+++||+|+.+.|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 799999999999999998875554 78999987753211 0 0111 2221 33 448999999987542
Q ss_pred --CCC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896 414 --KDI------------IR--GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 414 --~~l------------I~--~e~l~~MK~gAiLIN~GR 436 (718)
.++ +. .+.+....+.+++++++.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 121 11 122444567888888875
No 476
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=91.21 E-value=0.93 Score=47.74 Aligned_cols=89 Identities=21% Similarity=0.211 Sum_probs=60.6
Q ss_pred ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e---c--CHH----HHh--ccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V---T--TME----EAA--KEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v---~--~Le----ell--~~aDiIi~atg 412 (718)
-.|.+|.|.|. |.+|+.+++.++.+|++|+++...+.........|.. + . ++. ++. +..|+|+.+.+
T Consensus 138 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g 217 (324)
T cd08292 138 KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVG 217 (324)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCC
Confidence 36899999986 8999999999999999988875443322221122331 1 1 111 222 24799988877
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
.. .+ .+.++.++++..++.+|.
T Consensus 218 ~~-~~-~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 218 GK-LA-GELLSLLGEGGTLVSFGS 239 (324)
T ss_pred Ch-hH-HHHHHhhcCCcEEEEEec
Confidence 64 33 567899999999999875
No 477
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.16 E-value=0.19 Score=54.74 Aligned_cols=187 Identities=21% Similarity=0.265 Sum_probs=103.5
Q ss_pred CccceEEEecCCcccccccccccchhhHHHHH------------hhh--------cccccCCcEEEEEecCCCChhHHHH
Q psy7896 228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGL------------KRA--------TDIMLAGKVAVVAGYGDVGKGCAQS 287 (718)
Q Consensus 228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i------------~r~--------t~~~~~Gk~vvViGyG~vG~~~A~a 287 (718)
+.+++|.|+.+.......|...+.-=++.+.+ .+. ....+.||++.|+|+|.+|+.+|+.
T Consensus 84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~ 163 (311)
T PRK08410 84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI 163 (311)
T ss_pred hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHH
Confidence 46788888877766665555444211111111 000 0135899999999999999999999
Q ss_pred HHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHH
Q psy7896 288 LRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSL 367 (718)
Q Consensus 288 Lra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l 367 (718)
++++|.+|..+|..+... ..++... .+-..+
T Consensus 164 ~~~fgm~V~~~d~~~~~~----~~~~~~~---------------------------------------------~l~ell 194 (311)
T PRK08410 164 AQAFGAKVVYYSTSGKNK----NEEYERV---------------------------------------------SLEELL 194 (311)
T ss_pred HhhcCCEEEEECCCcccc----ccCceee---------------------------------------------cHHHHh
Confidence 999999999987643211 0111100 111333
Q ss_pred HhCCCEEEEEecCCccHHHHhhcCceecCHHHH--hccCcEEEEcCCCCCCcCHHHH-hcCCCCeEEEEcCC--CCcccc
Q psy7896 368 RLFGSRVIVTEIDPINALQASMEGYEVTTMEEA--AKEGGIFVTTTGCKDIIRGEHF-LQMRDDAIVCNIGH--FDCEIQ 442 (718)
Q Consensus 368 ~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel--l~~aDiIi~atgt~~lI~~e~l-~~MK~gAiLIN~GR--gd~Eid 442 (718)
+. ++|++.. -|... +.....+-+++ ++ .+.++..++--.+||.+.+ +.++.|-+- .|- +..|..
T Consensus 195 ~~--sDvv~lh-~Plt~-----~T~~li~~~~~~~Mk-~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~EP~ 263 (311)
T PRK08410 195 KT--SDIISIH-APLNE-----KTKNLIAYKELKLLK-DGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKEPM 263 (311)
T ss_pred hc--CCEEEEe-CCCCc-----hhhcccCHHHHHhCC-CCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCCCC
Confidence 32 4555432 12211 01112233333 33 3455556666678998886 778887554 332 222322
Q ss_pred HHHHhccccceeeecCCcccCccccchhhHHHHhh
Q psy7896 443 VSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLAT 477 (718)
Q Consensus 443 ~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~ 477 (718)
.. +..+-.....|||..+||.+.++.|+..+.
T Consensus 264 ~~---~~pL~~~~~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 264 EK---NHPLLSIKNKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CC---CChhhccCCCCCEEECCccccCCHHHHHHH
Confidence 11 111111123589999999999988887664
No 478
>PRK14851 hypothetical protein; Provisional
Probab=91.04 E-value=0.29 Score=58.79 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.6
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|++++|+|||+|.+|..++..|...|. +++++|.|.
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 4789999999999999999999999998 677777553
No 479
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.00 E-value=0.3 Score=54.81 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=32.9
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp 381 (718)
.|+..+|.|||.|.+|..+|..|...|. +++++|.|.
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 4788999999999999999999999998 688888664
No 480
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.38 Score=53.17 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=36.7
Q ss_pred cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
|.-++||+|.|||.|+.|-..|--|.+.=.+|++.+-+|.
T Consensus 349 GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 349 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 5678999999999999999999999999999999987775
No 481
>KOG0024|consensus
Probab=90.89 E-value=0.33 Score=53.19 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=39.8
Q ss_pred HHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896 257 DGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA 305 (718)
Q Consensus 257 ~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~ 305 (718)
.+..| ...-.|.+++|.|+||+|+-.-..++++|+ +|.++|..+.|.
T Consensus 160 HAcr~--~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl 207 (354)
T KOG0024|consen 160 HACRR--AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL 207 (354)
T ss_pred hhhhh--cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH
Confidence 34444 346789999999999999999889999998 999999888876
No 482
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.88 E-value=0.4 Score=59.90 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN 304 (718)
Q Consensus 269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r 304 (718)
-..|+|||.|+.|+.+|..|.+.|.+|+++|..+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 467999999999999999999999999999986543
No 483
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.87 E-value=0.8 Score=51.81 Aligned_cols=67 Identities=27% Similarity=0.280 Sum_probs=46.2
Q ss_pred ccC-cEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccH-HHHhhcCceec--C-HHHHhccCcEEEEcCC
Q psy7896 346 LAG-KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINA-LQASMEGYEVT--T-MEEAAKEGGIFVTTTG 412 (718)
Q Consensus 346 L~G-ktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~a-l~a~~~G~~v~--~-Leell~~aDiIi~atg 412 (718)
+.+ |+|.|||.|.+|++.++.+... |++|+++|..+... .+....|+.+. . -.+.+.++|+||..++
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~Spg 77 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPG 77 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCC
Confidence 456 8899999999999999999877 58899999755322 11122365541 1 1234578998887643
No 484
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=90.85 E-value=0.87 Score=48.07 Aligned_cols=77 Identities=25% Similarity=0.229 Sum_probs=47.9
Q ss_pred HHHHHHhCC--CEEEEEecCCccHHHHhhcCce--ecCHHHHhccCcEEEEcCCCCCC--cCHHHHhcCCCCeEEEEcCC
Q psy7896 363 CAQSLRLFG--SRVIVTEIDPINALQASMEGYE--VTTMEEAAKEGGIFVTTTGCKDI--IRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 363 vA~~l~~fG--a~Viv~d~dp~~al~a~~~G~~--v~~Leell~~aDiIi~atgt~~l--I~~e~l~~MK~gAiLIN~GR 436 (718)
+|+.|+..| .+|+++|+++.....+...|.. ..+-.+.++++|+|++|+.-..+ +-.+....+++++++.++|.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~S 80 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGS 80 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCC
Confidence 467777767 7999999998776666556653 22325788999999998753222 11233456899999999998
Q ss_pred CCc
Q psy7896 437 FDC 439 (718)
Q Consensus 437 gd~ 439 (718)
...
T Consensus 81 vK~ 83 (258)
T PF02153_consen 81 VKA 83 (258)
T ss_dssp -CH
T ss_pred CCH
Confidence 754
No 485
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.84 E-value=0.31 Score=53.37 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=54.6
Q ss_pred EEEEEec-ChhHHHHHHHHHhCCC-------EEEEEecCC--ccH------HHHh----hcCcee-cCHHHHhccCcEEE
Q psy7896 350 VAVVAGY-GDVGKGCAQSLRLFGS-------RVIVTEIDP--INA------LQAS----MEGYEV-TTMEEAAKEGGIFV 408 (718)
Q Consensus 350 tVGIIG~-G~IG~~vA~~l~~fGa-------~Viv~d~dp--~~a------l~a~----~~G~~v-~~Leell~~aDiIi 408 (718)
+|+|+|. |+||+.+|..+...|. ++.++|+++ ... +... ..++.+ ....+.++.||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999998875443 488888765 211 1100 011222 34668899999999
Q ss_pred EcCCC---CCC------------cC--HHHHhcC-CCCeEEEEcCC
Q psy7896 409 TTTGC---KDI------------IR--GEHFLQM-RDDAIVCNIGH 436 (718)
Q Consensus 409 ~atgt---~~l------------I~--~e~l~~M-K~gAiLIN~GR 436 (718)
.+.|. .++ +. .+.+... +++++++.++.
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 87542 111 11 1234455 57888888863
No 486
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=90.69 E-value=0.69 Score=48.35 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=61.1
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-e-----cCHH----HHh--ccCcEEEEcCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-V-----TTME----EAA--KEGGIFVTTTG 412 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v-----~~Le----ell--~~aDiIi~atg 412 (718)
-.|.+|.|.|.|.+|+.+++.++.+|++ |+++..++.+.......|.. + .++. ++. +..|+++.+.+
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g 207 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG 207 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 4689999999999999999999999999 88876655332221222321 1 1222 222 24788887765
Q ss_pred CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896 413 CKDIIRGEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 413 t~~lI~~e~l~~MK~gAiLIN~GRg 437 (718)
.... -...+..|+++..++++|..
T Consensus 208 ~~~~-~~~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 208 HQWP-LDLAGELVAERGRLVIFGYH 231 (312)
T ss_pred CHHH-HHHHHHHhccCCEEEEEccC
Confidence 4332 33567889999999998753
No 487
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.60 E-value=0.59 Score=51.07 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=55.4
Q ss_pred EEEEEec-ChhHHHHHHHHHhCC--CEEEEEecCCccHH-HHhhcC---ceec------CHHHHhccCcEEEEcCCC---
Q psy7896 350 VAVVAGY-GDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QASMEG---YEVT------TMEEAAKEGGIFVTTTGC--- 413 (718)
Q Consensus 350 tVGIIG~-G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a~~~G---~~v~------~Leell~~aDiIi~atgt--- 413 (718)
+|+|||. |+||..+|-.+...| .++.++|+++.... ....++ ..+. ++.+.++.||+|+++.|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 999999999886444 47889998772210 001122 1111 246789999999987542
Q ss_pred CCC------------cC--HHHHhcCCCCeEEEEcCCC
Q psy7896 414 KDI------------IR--GEHFLQMRDDAIVCNIGHF 437 (718)
Q Consensus 414 ~~l------------I~--~e~l~~MK~gAiLIN~GRg 437 (718)
+++ +. .+.+..-.++++++|++--
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 111 11 1234444688888888763
No 488
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.55 E-value=0.65 Score=49.30 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=60.1
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC-----H-HHHhccCcEEEEcCCCCCCcC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT-----M-EEAAKEGGIFVTTTGCKDIIR 418 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~-----L-eell~~aDiIi~atgt~~lI~ 418 (718)
-.|.+|.|+|.|.+|+.+++.++.+|++|++++.++.+.......|.. +.. . ...-+..|+++.+.+.... .
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~-~ 239 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAA-A 239 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHH-H
Confidence 457899999999999999999999999999987665432222222321 111 0 0112347888776554332 3
Q ss_pred HHHHhcCCCCeEEEEcCC
Q psy7896 419 GEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 419 ~e~l~~MK~gAiLIN~GR 436 (718)
.+.+..|+.+..++++|.
T Consensus 240 ~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 240 EAALGGLRRGGRIVLVGL 257 (330)
T ss_pred HHHHHhcccCCEEEEECC
Confidence 456788899989988875
No 489
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=90.54 E-value=0.75 Score=49.17 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=62.6
Q ss_pred ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce---ec--CH----HHHh--ccCcEEEEcCCC
Q psy7896 346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE---VT--TM----EEAA--KEGGIFVTTTGC 413 (718)
Q Consensus 346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~---v~--~L----eell--~~aDiIi~atgt 413 (718)
..|++|.|.|.|.+|+.+++.++.+|+ +|++++..+.+...+...|.. .. +. .++. +..|+++.+.+.
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~ 245 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG 245 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 468999999999999999999999997 888886554433222223421 11 12 2222 247888887765
Q ss_pred CCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896 414 KDIIRGEHFLQMRDDAIVCNIGHFD 438 (718)
Q Consensus 414 ~~lI~~e~l~~MK~gAiLIN~GRgd 438 (718)
... -.+.+..|+++..++.+|..+
T Consensus 246 ~~~-~~~~~~~l~~~g~~v~~g~~~ 269 (344)
T cd08284 246 AAA-LDLAFDLVRPGGVISSVGVHT 269 (344)
T ss_pred HHH-HHHHHHhcccCCEEEEECcCC
Confidence 333 335678899999999988653
No 490
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.44 E-value=0.65 Score=51.28 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=55.2
Q ss_pred cEEEEEec-ChhHHHHHHHHHhC-CCEEE-EEecCCc--cHHHH-hh--cC---ceec--CHHHHhccCcEEEEcCCCCC
Q psy7896 349 KVAVVAGY-GDVGKGCAQSLRLF-GSRVI-VTEIDPI--NALQA-SM--EG---YEVT--TMEEAAKEGGIFVTTTGCKD 415 (718)
Q Consensus 349 ktVGIIG~-G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~--~al~a-~~--~G---~~v~--~Leell~~aDiIi~atgt~~ 415 (718)
++|+|+|. |.+|+.+++.|... +.++. +++.++. +.+.. .. .+ ..+. +.++++.++|++++|+++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 67777 4454431 11111 10 11 1122 4566667899999998764
Q ss_pred CcCHHHHhcC-CCCeEEEEcC
Q psy7896 416 IIRGEHFLQM-RDDAIVCNIG 435 (718)
Q Consensus 416 lI~~e~l~~M-K~gAiLIN~G 435 (718)
...+....+ +.|..+|+.+
T Consensus 80 -~s~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 80 -VSAELAPELLAAGVKVIDLS 99 (346)
T ss_pred -HHHHHHHHHHhCCCEEEeCC
Confidence 333444433 6788888886
No 491
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=90.40 E-value=0.32 Score=53.41 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=60.5
Q ss_pred hhhhhhhHHHHhcCCccceEEEecCCcccccccccccchhhHHHH--------------Hhh-hcccccCCcEEEEEecC
Q psy7896 214 TTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDG--------------LKR-ATDIMLAGKVAVVAGYG 278 (718)
Q Consensus 214 ~sG~~rl~~~~~~g~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~--------------i~r-~t~~~~~Gk~vvViGyG 278 (718)
..|+..+- .....+.+++|.++.+.......|...+.-=++.+. +.+ ..+..+.|+++.|+|+|
T Consensus 77 ~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G 155 (330)
T PRK12480 77 TAGFDMYD-LDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred ccccchhh-HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence 34555542 222335688999998877777766666521111111 111 12345799999999999
Q ss_pred CCChhHHHHHHhcCCeEEEeecCch
Q psy7896 279 DVGKGCAQSLRLFGSRVIVTEIDPI 303 (718)
Q Consensus 279 ~vG~~~A~aLra~Gv~VtV~D~dp~ 303 (718)
.+|..+|..|+.+|.+|.++|..+.
T Consensus 156 ~IG~~vA~~L~~~G~~V~~~d~~~~ 180 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPN 180 (330)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChh
Confidence 9999999999999999999987664
No 492
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.40 E-value=0.47 Score=51.24 Aligned_cols=86 Identities=17% Similarity=0.071 Sum_probs=52.8
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-h-cCceec------------CHHHHhccCcEEEEcCCCC
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-M-EGYEVT------------TMEEAAKEGGIFVTTTGCK 414 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~-~G~~v~------------~Leell~~aDiIi~atgt~ 414 (718)
++|+|+|.|.||.-+|-+|...|.+|+++++.+.. .++. . .|.... .-.+.....|+|++++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 57999999999999999999999999999875421 2211 1 133211 0112234679998887654
Q ss_pred CCcC--HHHHhcCCCCeEEEEcC
Q psy7896 415 DIIR--GEHFLQMRDDAIVCNIG 435 (718)
Q Consensus 415 ~lI~--~e~l~~MK~gAiLIN~G 435 (718)
++-. +.....+.+++.++-.-
T Consensus 82 ~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 82 DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred hHHHHHHHHHhhCCCCCEEEEEe
Confidence 4321 11223345666665553
No 493
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.39 E-value=0.75 Score=48.57 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=31.3
Q ss_pred cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI 382 (718)
Q Consensus 349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~ 382 (718)
-++.|+|.|++++.+++.++.+|.+|+++|.+|.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 5899999999999999999999999999986654
No 494
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=90.37 E-value=0.25 Score=49.25 Aligned_cols=50 Identities=36% Similarity=0.465 Sum_probs=39.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch-hhhhhhhhhhhhh
Q psy7896 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI-NALQASMEGYELD 316 (718)
Q Consensus 267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~-r~v~AvaeGf~L~ 316 (718)
+.+|+|+|+|||.-|..-|.-||..|+.|+|...... ....|..+||.+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~ 52 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM 52 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec
Confidence 5789999999999999999999999999999887666 5566777888764
No 495
>PRK07877 hypothetical protein; Provisional
Probab=90.36 E-value=0.31 Score=58.84 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=31.5
Q ss_pred cccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCC
Q psy7896 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDP 381 (718)
Q Consensus 345 eL~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp 381 (718)
.|+.++|+|||+| +|..+|..|.+.|. +++++|.|.
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 4789999999999 99999999999884 888887664
No 496
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.27 E-value=0.22 Score=46.39 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=50.4
Q ss_pred EEEEEe-cChhHHHHHHHHHh-CCCEEE-EEecCC-c-cHHHHh---hcCce---ecC-HHHHhccCcEEEEcCCCCCCc
Q psy7896 350 VAVVAG-YGDVGKGCAQSLRL-FGSRVI-VTEIDP-I-NALQAS---MEGYE---VTT-MEEAAKEGGIFVTTTGCKDII 417 (718)
Q Consensus 350 tVGIIG-~G~IG~~vA~~l~~-fGa~Vi-v~d~dp-~-~al~a~---~~G~~---v~~-Leell~~aDiIi~atgt~~lI 417 (718)
+|+||| .|.+|+.+.++|.. ..++++ ++.+.+ . +.+... ..++. +.+ -.+.+..+|++++|+++. .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~--~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG--A 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH--H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh--H
Confidence 699999 99999999999976 444544 344444 1 111111 11221 212 224458999999997753 1
Q ss_pred CHHHHh-cCCCCeEEEEcCC
Q psy7896 418 RGEHFL-QMRDDAIVCNIGH 436 (718)
Q Consensus 418 ~~e~l~-~MK~gAiLIN~GR 436 (718)
..+... ..+.|..+|+.+.
T Consensus 79 ~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 79 SKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp HHHHHHHHHHTTSEEEESSS
T ss_pred HHHHHHHHhhCCcEEEeCCH
Confidence 223332 3588888888865
No 497
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=90.22 E-value=0.73 Score=50.74 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=60.6
Q ss_pred ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC---------------------------
Q psy7896 346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT--------------------------- 396 (718)
Q Consensus 346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~--------------------------- 396 (718)
-.|.+|.|.|. |.||..+++.++.+|++|++++.++.+...+...|.. +.+
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARR 271 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccch
Confidence 45899999997 9999999999999999988887665443333333421 000
Q ss_pred H----HHHhc---cCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896 397 M----EEAAK---EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGH 436 (718)
Q Consensus 397 L----eell~---~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GR 436 (718)
+ .++.. ..|+|+.+++.. .+ .+.+..|+++..++.+|.
T Consensus 272 ~~~~v~~l~~~~~g~d~vid~~g~~-~~-~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 272 FGKAIWDILGGREDPDIVFEHPGRA-TF-PTSVFVCDRGGMVVICAG 316 (393)
T ss_pred HHHHHHHHhCCCCCCeEEEECCchH-hH-HHHHHHhccCCEEEEEcc
Confidence 1 12222 478888777653 23 356788888888888765
No 498
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.21 E-value=1.4 Score=46.09 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=63.7
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM 345 (718)
Q Consensus 266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e 345 (718)
...|++|+|+|+|.++..=+..|...|..|+|+............. .++..+.++.+....
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-------------------~~~i~~~~r~~~~~d 82 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-------------------YGNLKLIKGNYDKEF 82 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-------------------CCCEEEEeCCCChHH
Confidence 4678999999999999998999999999999985443322211111 011122233344456
Q ss_pred ccCcEEEEEecCh--hHHHHHHHHHhCCCEEEEEe
Q psy7896 346 LAGKVAVVAGYGD--VGKGCAQSLRLFGSRVIVTE 378 (718)
Q Consensus 346 L~GktVGIIG~G~--IG~~vA~~l~~fGa~Viv~d 378 (718)
+.|..+.|.-.++ +-..+++.++..|.-|-+.|
T Consensus 83 l~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 83 IKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred hCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 7788888887775 67788888888777666654
No 499
>PRK06444 prephenate dehydrogenase; Provisional
Probab=90.19 E-value=0.48 Score=48.51 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=45.5
Q ss_pred cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCC
Q psy7896 349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRD 427 (718)
Q Consensus 349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~ 427 (718)
.+++|||. |+.|+.++++++..|..|.+ +++|+|++++.-..+ .+.++.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------~~~DlVilavPv~~~--~~~i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------KKADHAFLSVPIDAA--LNYIESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------CCCCEEEEeCCHHHH--HHHHHHhC-
Confidence 37999999 99999999999999998852 368999998764322 23344443
Q ss_pred CeEEEEcCCCCc
Q psy7896 428 DAIVCNIGHFDC 439 (718)
Q Consensus 428 gAiLIN~GRgd~ 439 (718)
.+++++|.-..
T Consensus 53 -~~v~Dv~SvK~ 63 (197)
T PRK06444 53 -NNFVEISSVKW 63 (197)
T ss_pred -CeEEeccccCH
Confidence 26778887654
No 500
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.04 E-value=0.69 Score=56.57 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=46.4
Q ss_pred cEEEEEecChhHHHH-HHHHHhCCCEEEEEecCCccHHHHh-hcCceec--CHHHHhccCcEEEEcCC
Q psy7896 349 KVAVVAGYGDVGKGC-AQSLRLFGSRVIVTEIDPINALQAS-MEGYEVT--TMEEAAKEGGIFVTTTG 412 (718)
Q Consensus 349 ktVGIIG~G~IG~~v-A~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v~--~Leell~~aDiIi~atg 412 (718)
+++.|||.|.+|++. |+.|+..|++|+++|..+....... ..|..+. .-.+.+..+|+||..++
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~Spg 72 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSS 72 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCC
Confidence 469999999999998 9999999999999997654322211 2355442 23355678999997644
Done!