RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7896
(718 letters)
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 484 bits (1249), Expect = e-166
Identities = 167/313 (53%), Positives = 205/313 (65%), Gaps = 28/313 (8%)
Query: 2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
DI LA+WGRK + +AE EMPGLMA R ++G + LKGARI+G LHMT+QTAVLIETL
Sbjct: 8 KDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKV 67
Query: 62 LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
LGAEV+W+SCNIFSTQDHAAAAIAA G V+A KGET EEY +Q +PDG+P NMI
Sbjct: 68 LGAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNMI 127
Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPL 181
LDDGGD T + E V + ++
Sbjct: 128 LDDGGDATMYILIGAR------------------------AEAGEDVLSNPQSEEEEVLF 163
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
I + + + I+G++EETTTGV+ LY++ K+ L PAINVNDSVT
Sbjct: 164 AQIKKRMAATPG----FFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVT 219
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
KSKFDN YGC+ESLVDG++R TD+M+AGKVAVV GYGDVGKG AQSL G+RV VTE+D
Sbjct: 220 KSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVD 279
Query: 302 PINALQASMEGYE 314
PI ALQA+M+G+E
Sbjct: 280 PICALQAAMDGFE 292
Score = 241 bits (616), Expect = 4e-72
Identities = 67/108 (62%), Positives = 83/108 (76%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VD P+G +ILL+EGRL+NLG A GHPSFVMS SFTNQVL QIEL+T+ Y VY
Sbjct: 357 VDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTDAYKNEVY 416
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
+LPK LDE+VA LHL+ LG KLT L+E+QA Y+G+ +GP+K +HYRY
Sbjct: 417 VLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 464
Score = 240 bits (615), Expect = 5e-72
Identities = 100/291 (34%), Positives = 133/291 (45%), Gaps = 64/291 (21%)
Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
+P NMILDDGGD T + + + +S + L+ K+ P
Sbjct: 122 EPSNMILDDGGDATMYILIGA-RAEAGEDVLSNPQSEEEEVLFAQIKKRMAATP------ 174
Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGK--VAVVAGYGDVGK-------GCAQSLR 289
+ + G E G+ R + G + V K GC +SL
Sbjct: 175 GFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESL- 233
Query: 290 LFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGK 349
+D I + D+M+AGK
Sbjct: 234 ----------VDGIR-----------------------------------RGTDVMMAGK 248
Query: 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVT 409
VAVV GYGDVGKG AQSL G+RV VTE+DPI ALQA+M+G+EV T+++AA I VT
Sbjct: 249 VAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVT 308
Query: 410 TTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
TTG KD+I +H +M+D IV NIGHFD EIQV+ L ++ NVKPQV
Sbjct: 309 TTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAAL--RNLKWTNVKPQV 357
Score = 223 bits (570), Expect = 1e-65
Identities = 73/108 (67%), Positives = 85/108 (78%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LA+WGRK + +AE EMPGLMA R ++G + LKGARI+G LHMT+QTAVLIETL L
Sbjct: 9 DISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVL 68
Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
GAEV+W+SCNIFSTQDHAAAAIAA G V+A KGET EEY +Q
Sbjct: 69 GAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIF 116
Score = 63.9 bits (156), Expect = 9e-11
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA LHL+ LG KLT L+E+QA Y+ + G
Sbjct: 421 HLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQG 455
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 453 bits (1166), Expect = e-153
Identities = 173/313 (55%), Positives = 208/313 (66%), Gaps = 28/313 (8%)
Query: 2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
ADI LA WGRK + +AE EMPGL+ +R +Y AQ+ LKGARIAG LHMT+QT VLIETL
Sbjct: 38 ADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKA 97
Query: 62 LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
LGA+V+W+SCNIFSTQDHAAAAI G V+A+KGE+ +EY + +P+G+ NMI
Sbjct: 98 LGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMI 157
Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPL 181
LDDGGD T L+ E V A N+
Sbjct: 158 LDDGGDATLLLILGSKA------------------------EKDRSVIARPTNEEEVALF 193
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
I + Y + L+ I+G++EETTTGVH LY+M K+ +L PA NVNDSVT
Sbjct: 194 KSIERHLEIDGS----WYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVT 249
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
KSKFDNLYGCRESLVDG+KRATD+M+AGK+AVVAGYGDVGKGCAQSLR G+ V VTEID
Sbjct: 250 KSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEID 309
Query: 302 PINALQASMEGYE 314
PI ALQA+MEGY
Sbjct: 310 PICALQAAMEGYR 322
Score = 243 bits (621), Expect = 2e-72
Identities = 70/108 (64%), Positives = 86/108 (79%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
VD P+G +ILLAEGRLVNLGCA GHPSFVMSNSFTNQ LAQIEL+T+ +Y VY
Sbjct: 387 VDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVY 446
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
+LPK LDE+VA LHL +G +L++L++DQA Y+G+ GP+KPDHYRY
Sbjct: 447 VLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 494
Score = 211 bits (538), Expect = 1e-60
Identities = 75/118 (63%), Positives = 87/118 (73%), Gaps = 2/118 (1%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGK+AVVAGYGDVGKGCAQSLR G+ V VTEIDPI ALQA+MEGY V TME AA
Sbjct: 272 DVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAAD 331
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
+ IFVT TG +I +H MR +AIVCNIGHFD EI V+ + E N+KPQV
Sbjct: 332 KADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWE--NIKPQV 387
Score = 207 bits (528), Expect = 3e-59
Identities = 67/108 (62%), Positives = 82/108 (75%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LA WGRK + +AE EMPGL+ +R +Y AQ+ LKGARIAG LHMT+QT VLIETL L
Sbjct: 39 DIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKAL 98
Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
GA+V+W+SCNIFSTQDHAAAAI G V+A+KGE+ +EY +
Sbjct: 99 GADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIF 146
Score = 64.0 bits (156), Expect = 7e-11
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA LHL +G +L++L++DQA Y+ + AG
Sbjct: 451 HLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAG 485
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 445 bits (1146), Expect = e-150
Identities = 170/313 (54%), Positives = 205/313 (65%), Gaps = 22/313 (7%)
Query: 2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
D+ A++GR I +AE EMPGLMA R ++G + KGA+I G LHMT+QTAVLIETL
Sbjct: 20 KDMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTA 79
Query: 62 LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
LGAEV+W SCNIFSTQDHAAAAIA AV+AWKGET +EY WC E+ L + G ++I
Sbjct: 80 LGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLI 139
Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPL 181
+DDGGD T L+HE GV K + P N L
Sbjct: 140 VDDGGDTTLLIHE------------------GVKAEEIYEKSGQFPDPDSTDNAEFKIVL 181
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
++I + ++Y + + G+SEETTTGV LY+M L PAINVNDSVT
Sbjct: 182 SII----KEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVT 237
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
KSKFDNLYGCR SL DGL RATD+M+AGKVAVVAGYGDVGKGCA +L+ G+RVIVTEID
Sbjct: 238 KSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID 297
Query: 302 PINALQASMEGYE 314
PI ALQA+MEG +
Sbjct: 298 PICALQATMEGLQ 310
Score = 241 bits (617), Expect = 5e-72
Identities = 75/111 (67%), Positives = 89/111 (80%), Gaps = 3/111 (2%)
Query: 611 VDRYTLPNGN-HIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPV 667
DR+ P N II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW + S +Y
Sbjct: 378 TDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEK 437
Query: 668 GVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
VY+LPK LDE+VAALHLE LG KLTKL++DQA Y+ +P+EGPYKP HYRY
Sbjct: 438 KVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 488
Score = 222 bits (568), Expect = 4e-65
Identities = 98/285 (34%), Positives = 139/285 (48%), Gaps = 43/285 (15%)
Query: 179 KPLNMILDDGGDLTNLVHE--KYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINV 236
++I+DDGGD T L+HE K + + + +T + K +
Sbjct: 134 GGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFPDPDSTDNAEFKIVLSIIK---EGLKT 190
Query: 237 NDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
+ D + G E G+KR + G +
Sbjct: 191 DPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLF----------------------- 227
Query: 297 VTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGY 356
P + S+ + D H G+ + D+M+AGKVAVVAGY
Sbjct: 228 -----PAINVNDSVTKSKFDNLYGCRHSLPDGLM---------RATDVMIAGKVAVVAGY 273
Query: 357 GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDI 416
GDVGKGCA +L+ G+RVIVTEIDPI ALQA+MEG +V T+E+ E IFVTTTG KDI
Sbjct: 274 GDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDI 333
Query: 417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN-AVEKVNVKPQV 460
I +H +M+++AIVCNIGHFD EI + L+ + V+++ +KPQ
Sbjct: 334 IMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQT 378
Score = 214 bits (547), Expect = 5e-62
Identities = 70/108 (64%), Positives = 83/108 (76%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
D+ A++GR I +AE EMPGLMA R ++G + KGA+I G LHMT+QTAVLIETL L
Sbjct: 21 DMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTAL 80
Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
GAEV+W SCNIFSTQDHAAAAIA AV+AWKGET +EY WC E+ L
Sbjct: 81 GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERAL 128
Score = 65.5 bits (160), Expect = 2e-11
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VAALHLE LG KLTKL++DQA Y+ + + G
Sbjct: 445 HLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEG 479
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 440 bits (1133), Expect = e-148
Identities = 165/323 (51%), Positives = 204/323 (63%), Gaps = 36/323 (11%)
Query: 2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
AD+ LA++GRK + +AE+EMPGLM+LRR+Y + LKGARI+G LHMTVQTAVLIETL
Sbjct: 23 ADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTA 82
Query: 62 LGAEVQWSSCNIFSTQDHAAAA---------IAARGVAVYAWKGETDEEYVWCIEQTLVF 112
LGAEV+W+SCNIFSTQDHAAAA +GV V+AWKGET EEY W EQ L +
Sbjct: 83 LGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLTW 142
Query: 113 PDG-KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAI 171
PD KP NMILDDGGD T LV E VP
Sbjct: 143 PDPDKPANMILDDGGDATMLVLRGMQY------------------------EKAGVVPPA 178
Query: 172 NVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGV 231
+D + L+ +K+ + ++G++EETTTGV LY+ L
Sbjct: 179 EEDDP--AEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAF 236
Query: 232 PAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLF 291
PAINVNDSVTKSKFDN YG R SL+DG+ R TD ++ GK ++ GYGDVGKGCA++++
Sbjct: 237 PAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQ 296
Query: 292 GSRVIVTEIDPINALQASMEGYE 314
G+RV VTEIDPINALQA MEG++
Sbjct: 297 GARVSVTEIDPINALQAMMEGFD 319
Score = 243 bits (622), Expect = 1e-72
Identities = 72/109 (66%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 611 VDRYTLPN-GNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGV 669
VD +T + G II+L+EGRL+NLG A GHPSFVMSNSF NQ +AQIELWTK+ +Y V
Sbjct: 386 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEYDNEV 445
Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
Y LPK LDE+VA +H+E LG LTKLT++QA+YLG+ +EGPYKPDHYRY
Sbjct: 446 YRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 494
Score = 239 bits (612), Expect = 3e-71
Identities = 103/296 (34%), Positives = 135/296 (45%), Gaps = 70/296 (23%)
Query: 179 KPLNMILDDGGDLTNLVH-----EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPA 233
KP NMILDDGGD T LV EK E ++ L F+ +K
Sbjct: 147 KPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVFLNLLRTRFETDKDKWTK 206
Query: 234 INVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKV---------AVVAGYGDVGKGC 284
I +++ G E G+ R AG + +V D G
Sbjct: 207 I----------AESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGT 256
Query: 285 AQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
SL ID IN + D
Sbjct: 257 RHSL-----------IDGIN-----------------------------------RGTDA 270
Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG 404
++ GK ++ GYGDVGKGCA++++ G+RV VTEIDPINALQA MEG++V T+EEA +
Sbjct: 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDA 330
Query: 405 GIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
I VT TG KDII EH M+D AI+ NIGHFD EI ++ L+++ +VNVKPQV
Sbjct: 331 DIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQV 386
Score = 196 bits (501), Expect = 2e-55
Identities = 75/117 (64%), Positives = 89/117 (76%), Gaps = 9/117 (7%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
D+ LA++GRK + +AE+EMPGLM+LRR+Y + LKGARI+G LHMTVQTAVLIETL L
Sbjct: 24 DLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTAL 83
Query: 563 GAEVQWSSCNIFSTQDHAAAA---------IAARGVAVYAWKGETDEEYVWCIEQTL 610
GAEV+W+SCNIFSTQDHAAAA +GV V+AWKGET EEY W EQ L
Sbjct: 84 GAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQML 140
Score = 65.2 bits (159), Expect = 3e-11
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA +H+E LG LTKLT++QA+YL + + G
Sbjct: 451 HLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEG 485
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 433 bits (1116), Expect = e-146
Identities = 153/316 (48%), Positives = 202/316 (63%), Gaps = 25/316 (7%)
Query: 2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
DI LA +G+ + ++ENEMPGLM +R +YG + LK A+I GCLHMTV+ A+LIETL +
Sbjct: 9 KDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQK 68
Query: 62 LGAEVQWSSCNIFSTQDHAAAA-IAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKP--L 118
LGA+++W SCNI+ST D+AAAA V V+AWK ET EEY WC+E L + DG
Sbjct: 69 LGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGP 128
Query: 119 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 178
+MI+DDGGD T LVH+ GV ++N L P N+
Sbjct: 129 DMIVDDGGDATLLVHK------------------GVEYEKLYEEKNILPDPEKAKNEEER 170
Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
L ++ + +K+ +I G+SEETTTGV L KM K+N+L AINVND
Sbjct: 171 CFLTLL----KNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVND 226
Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
+VTK K+DN+YGCR SL DGL RATD +++GK+ V+ GYGDVGKGCA S++ G+RV +T
Sbjct: 227 AVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYIT 286
Query: 299 EIDPINALQASMEGYE 314
EIDPI A+QA MEG+
Sbjct: 287 EIDPICAIQAVMEGFN 302
Score = 243 bits (621), Expect = 9e-73
Identities = 62/110 (56%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKH--SQYPVG 668
VDR TLPNGN II+LA GRL+NLGCA GHP+FVMS SF NQ AQ++LW ++Y
Sbjct: 370 VDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENK 429
Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
VY+LPK LDE+VA HL+ L LT+L ++Q ++LG+ GP+K + YRY
Sbjct: 430 VYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
Score = 227 bits (580), Expect = 7e-67
Identities = 90/301 (29%), Positives = 126/301 (41%), Gaps = 57/301 (18%)
Query: 170 AINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKL 229
A+ D +MI+DDGGD T LVH+ N + L
Sbjct: 117 ALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLL 176
Query: 230 GVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAG--KVAVVAGYGDVGK----- 282
+ T + G E G+ R + + V K
Sbjct: 177 KNSILKNPKKWTN-IAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDN 235
Query: 283 --GCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAK 340
GC SL D + +
Sbjct: 236 VYGCRHSL-----------PDGLM-----------------------------------R 249
Query: 341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA 400
D +++GK+ V+ GYGDVGKGCA S++ G+RV +TEIDPI A+QA MEG+ V T++E
Sbjct: 250 ATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEI 309
Query: 401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK-NAVEKVNVKPQ 459
+G F+T TG D+I+ EH L+M+++A+V NIGHFD EIQV+ L + NVKPQ
Sbjct: 310 VDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQ 369
Query: 460 V 460
V
Sbjct: 370 V 370
Score = 199 bits (508), Expect = 1e-56
Identities = 65/123 (52%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LA +G+ + ++ENEMPGLM +R +YG + LK A+I GCLHMTV+ A+LIETL +L
Sbjct: 10 DISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKL 69
Query: 563 GAEVQWSSCNIFSTQDHAAAA-IAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNH 621
GA+++W SCNI+ST D+AAAA V V+AWK ET EEY WC+E L NG
Sbjct: 70 GAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPD 129
Query: 622 IIL 624
+I+
Sbjct: 130 MIV 132
Score = 64.8 bits (158), Expect = 4e-11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
LDE+VA HL+ L LT+L ++Q ++L + +G
Sbjct: 436 HLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSG 470
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 361 bits (929), Expect = e-118
Identities = 122/179 (68%), Positives = 146/179 (81%), Gaps = 1/179 (0%)
Query: 2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
DI LAEWGR+ + +AENEMPGLM LRR+YG K LKGA+IAGCLHMT+QTAVLIETL+E
Sbjct: 6 RDISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVE 65
Query: 62 LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFP-DGKPLNM 120
LGAEV+W+SCNIFSTQDHAAAAIA RG+ V+AWKGET+EEY+WC++QTL NM
Sbjct: 66 LGAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNM 125
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
+LDDGGDLTN V ++ + +I G+SEETTTGV NLYK + KL +PA+NVNDSVTK
Sbjct: 126 LLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTK 184
Score = 290 bits (744), Expect = 4e-91
Identities = 96/136 (70%), Positives = 114/136 (83%)
Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
NM+LDDGGDLTN V ++ + +I G+SEETTTGV NLYK + KL +PA+NVND
Sbjct: 121 GYPNMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVND 180
Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
SVTKSKFDNLYGCRESLVDG+KRATD+M+AGK A V GYGDVGKGCA +LR FG+RV+VT
Sbjct: 181 SVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVT 240
Query: 299 EIDPINALQASMEGYE 314
E+DPINALQA+MEGY+
Sbjct: 241 EVDPINALQAAMEGYQ 256
Score = 242 bits (619), Expect = 7e-73
Identities = 83/118 (70%), Positives = 97/118 (82%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M+AGK A V GYGDVGKGCA +LR FG+RV+VTE+DPINALQA+MEGY+V +E+ +
Sbjct: 206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVE 265
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
E IFVTTTG DII EHF +MRDDAIVCNIGHFD EIQV+WL NA E+V VKPQV
Sbjct: 266 EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQV 323
Score = 235 bits (601), Expect = 3e-70
Identities = 84/108 (77%), Positives = 99/108 (91%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
DI LAEWGR+ + +AENEMPGLM LRR+YG K LKGA+IAGCLHMT+QTAVLIETL+EL
Sbjct: 7 DISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVEL 66
Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
GAEV+W+SCNIFSTQDHAAAAIA RG+ V+AWKGET+EEY+WC++QTL
Sbjct: 67 GAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTL 114
Score = 222 bits (568), Expect = 2e-65
Identities = 81/114 (71%), Positives = 88/114 (77%), Gaps = 6/114 (5%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKH------SQ 664
VDRYT+ NG HIILLAEGRLVNLGCA GHPSFVMSNSF NQVLAQIELWT
Sbjct: 323 VDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRG 382
Query: 665 YPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
VY LPKKLDE+VAALHL LG KLTKLT QA+Y+ P++GP+KPDHYRY
Sbjct: 383 AKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHYRY 436
Score = 61.1 bits (149), Expect = 6e-10
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 313 YELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
+LDE+VAALHL LG KLTKLT QA+Y++
Sbjct: 392 KKLDEKVAALHLGKLGAKLTKLTPKQAEYINC 423
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 358 bits (921), Expect = e-117
Identities = 97/178 (54%), Positives = 134/178 (75%), Gaps = 1/178 (0%)
Query: 2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
+IK AE+GR+ I +AE EMP LMALR++ +K L GA+I GC H+T QTAVL+ETL
Sbjct: 17 KNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGA 76
Query: 62 LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
LGA+ +W++CNI+ST + AAA+A G V+AWKGE+++++ WCI++ + +P NMI
Sbjct: 77 LGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQP-NMI 135
Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
LDDGGDLT+ +++KYP +I+GI EE+ TGVH LY++ K KL VPA+NVNDSVTK
Sbjct: 136 LDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTK 193
Score = 288 bits (740), Expect = 1e-90
Identities = 86/136 (63%), Positives = 104/136 (76%)
Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
NMILDDGGDLT+ +++KYP +I+GI EE+ TGVH LY++ K KL VPA+NVND
Sbjct: 130 WQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVND 189
Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
SVTK KFDNLY CRES++DGLKR TD+M GK VV GYG+VGKGC +L+ GS V VT
Sbjct: 190 SVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVT 249
Query: 299 EIDPINALQASMEGYE 314
EIDPI ALQA M+G+
Sbjct: 250 EIDPICALQACMDGFR 265
Score = 240 bits (614), Expect = 4e-72
Identities = 53/118 (44%), Positives = 75/118 (63%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D+M GK VV GYG+VGKGC +L+ GS V VTEIDPI ALQA M+G+ + + E +
Sbjct: 215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIR 274
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
+ I +T TG K+++ EH +M++ IVCN+GH + EI V+ L + V+ QV
Sbjct: 275 QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQV 332
Score = 231 bits (591), Expect = 7e-69
Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
+IK AE+GR+ I +AE EMP LMALR++ +K L GA+I GC H+T QTAVL+ETL L
Sbjct: 18 NIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGAL 77
Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHI 622
GA+ +W++CNI+ST + AAA+A G V+AWKGE+++++ WCI++ + PN +
Sbjct: 78 GAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPN---M 134
Query: 623 IL 624
IL
Sbjct: 135 IL 136
Score = 205 bits (524), Expect = 3e-59
Identities = 55/105 (52%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTK-HSQYPVGV 669
VD P+G I+LLAEGRL+NL C+ P+FV+S + T Q LA IEL+ +Y V
Sbjct: 332 VDHVIWPDGKRIVLLAEGRLLNLSCS-TVPTFVLSITATTQALALIELYNAPEGRYKQDV 390
Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPD 714
Y+LPKK+DE VA+LHL LT+LT++QAKYLGL GP+KP+
Sbjct: 391 YLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN 435
Score = 60.7 bits (148), Expect = 7e-10
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 313 YELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
++DE VA+LHL LT+LT++QAKYL +
Sbjct: 395 KKMDEYVASLHLPTFDAHLTELTDEQAKYLGL 426
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 70.0 bits (171), Expect = 3e-13
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 15/162 (9%)
Query: 170 AINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSE-IRGISEETT--TGVHN--LYKMF 224
N D++ P++ ++ G + + + E I +G+ N L +
Sbjct: 55 DWNTVDAILLPISGT-NEAGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCM 113
Query: 225 KENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGC 284
K+ + + D + N E + + TD + G V G G VG
Sbjct: 114 KKTNRTLVKLMERDDIA---IYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSV 170
Query: 285 AQSLRLFGSRVIVTEIDPINALQASMEGY------ELDEEVA 320
A+ G++V V + + + G + +E+
Sbjct: 171 ARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212
Score = 66.1 bits (161), Expect = 6e-12
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
D + G V G G VG A+ G++V V + + + G E + +AA+
Sbjct: 150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQ 209
Query: 403 EGG----IFVTTTGCKDIIRGEHFLQMRDDAIVCNIG 435
E T ++ +M V ++
Sbjct: 210 ELRDVDVCINTIPAL--VVTANVLAEMPSHTFVIDLA 244
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 82/547 (14%), Positives = 177/547 (32%), Gaps = 130/547 (23%)
Query: 212 ETTTGVHNL-YK----MFKEN-KLGVPAINVNDS----VTKSKFDNLYGCRESLVDGLKR 261
+ TG H YK +F++ +V D ++K + D++ +++ V G R
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA-VSGTLR 66
Query: 262 ATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----- 316
+L+ + +V + V + + + S + + P ++ M + D
Sbjct: 67 LFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRLYND 122
Query: 317 -EEVAALHL--EHLGVKLTK-LTEDQ-AKYLDI--ML-AGK-VAVVAGYGDVGKGCAQSL 367
+ A ++ +KL + L E + AK + I +L +GK + C
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 368 RLF----GSRVIVTEI-DPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHF 422
++F + + + + L Y++ + + +I H
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLL-----YQIDPNWTSRSDHS--------SNIKLRIHS 229
Query: 423 LQMRDDAIVCNIGHFDCEI---QVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCN 479
+Q ++ + + +C + V + A N+ ++ T+R K + T+ L A
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV-Q-NAKAWNAFNLSCKILLTTRFKQV-TDFLSAA-- 284
Query: 480 SLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEM----PGLMALRRKYGAQK 535
+ ++ H + TL + L ++ E+ P +++
Sbjct: 285 ---TTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSI---IAESI 337
Query: 536 ILKGARIAGCLHMTV-QTAVLIETLLEL--GAEVQ--WSSCNIFSTQDHAAAAIAARGVA 590
A H+ + +IE+ L + AE + + ++F A I ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF--PPS--AHIPTILLS 393
Query: 591 VYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTN 650
+ W + V+ N
Sbjct: 394 LI-WFDVIKSD--------------------------------------VMVVV-NKLHK 413
Query: 651 QVLAQIELWTKHSQYPV-GVYMLPKKLDEEVAALH---LEHLGVK-------LTKLTEDQ 699
L +E K S + +Y+ K E ALH ++H + L DQ
Sbjct: 414 YSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 700 --AKYLG 704
++G
Sbjct: 472 YFYSHIG 478
Score = 36.8 bits (84), Expect = 0.029
Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 59/215 (27%)
Query: 98 TDEEYVWCIEQTLVFPDGKPL----------NMILDDGGDLTNLVHEKYPQFLSEIRGIS 147
EY ++ VFP + ++I D + N +H+ S +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-----SLVEKQP 421
Query: 148 EETTTGVHNLYKMFKENKLGVPAIN--VNDSVTKPLNMILDDGGDLTN-------LVH-- 196
+E+T + ++Y K A++ + D P DD + H
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 197 ------EKYP---------QFLSE-IR--GISEETTTGVHNL------YKMF-KENKLGV 231
E+ +FL + IR + + + N YK + +N
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND--- 538
Query: 232 PAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIM 266
+ + + D L E+L+ + TD++
Sbjct: 539 ---PKYERLVNAILDFLPKIEENLICS--KYTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 3e-05
Identities = 74/442 (16%), Positives = 129/442 (29%), Gaps = 152/442 (34%)
Query: 55 LIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAW--KGET--DEEYVWCIEQTL 110
L+ L++ AE + A + +G+ + W D++Y+ I +
Sbjct: 183 LVGDLIKFSAET----LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 111 VFPDGKPLNMILDDGGDLTNLVHEKYPQFL-------SEIRGISEETTTGVHNLYKMFKE 163
PL G + L H Y E+R + T L
Sbjct: 239 ------PLI-----G--VIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGL------ 277
Query: 164 NKLGVPAINVNDSVTKP-LNMILDDGGDLTNL------VHEKYPQFLSEIRGISEETTTG 216
V A+ + ++ + + + +T L +E YP + +
Sbjct: 278 ----VTAVAIAETDSWESFFVSVRKA--ITVLFFIGVRCYEAYPNTSLPPSILEDS---- 327
Query: 217 VHNLYKMFKENKLGVPA--INVNDSVTKSKFD------NLYGCRE-----SLVDGLKRAT 263
EN GVP+ +++++ +T+ + N + SLV+G K
Sbjct: 328 --------LENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-- 376
Query: 264 DIMLAGKVAVVAG-----YG--------DVGKGCAQSLRLFGSR--VIVTEIDPINALQA 308
VV+G YG G QS F R P+
Sbjct: 377 --------LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA---- 424
Query: 309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG---KVAVVAGYGDVGKGCAQ 365
+ H L + +D K ++ ++ V Y D G
Sbjct: 425 -----------SPFHSHLLVPASDLINKDLVKN-NVSFNAKDIQIPV---Y-DTFDG--S 466
Query: 366 SLRLFGSRV---IVTEI--DPIN---ALQAS-----------MEGYEVTTMEEAAKEGGI 406
LR+ + IV I P+ Q G + + K+G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG--LGVLTHRNKDG-- 522
Query: 407 FVTTTGCKDIIRGEHFLQMRDD 428
TG + I+ G + DD
Sbjct: 523 ----TGVRVIVAGTLDINPDDD 540
Score = 42.3 bits (99), Expect = 6e-04
Identities = 87/548 (15%), Positives = 139/548 (25%), Gaps = 233/548 (42%)
Query: 285 AQSLRLF----GSRVIVTEID-P----INALQ----------ASMEGYELDEEVAALHLE 325
A S R GS + + P A Q EG+ D+E
Sbjct: 3 AYSTRPLTLSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP--- 57
Query: 326 HLGVKLTKLTEDQAKYLDIMLAGKV--AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN 383
+L K+L ++ V + V + V L F + + D I+
Sbjct: 58 ---AELV------GKFLG-YVSSLVEPSKVGQFDQVLN---LCLTEFENC-YLEGND-IH 102
Query: 384 ALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQV 443
AL A + TT+ + K++I+ +++ R
Sbjct: 103 ALAAKLLQENDTTLVKT-------------KELIK--NYITAR----------------- 130
Query: 444 SWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNS-------LF-------KY----- 484
++ K S AL +F Y
Sbjct: 131 -----IMAKRPFDKKSNS-----------ALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 485 SLVNT--------IHEAPTLLVHLSTD-----------IKLAEWGRKTIIMAENEMPGLM 525
L T I + L L + + EW + P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP-----SNTPD-- 227
Query: 526 ALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELG---AEVQWSSCNIFSTQDH--- 579
+ L I+ L +Q A + T LG E++ H
Sbjct: 228 --------KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK---GATGHSQG 276
Query: 580 --AAAAIAA------------RGVAVYAWKG-ETDEEY-VWCIEQTLVDRYTLPNGNHII 623
A AIA + + V + G E Y + +++ +L N
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL-EDSLENNE--- 332
Query: 624 LLAEGRLVNLGCAMGHPSFVM---SNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEV 680
G PS M SN QV + H LP ++V
Sbjct: 333 --------------GVPSP-MLSISNLTQEQVQDYVNKTNSH---------LPA--GKQV 366
Query: 681 A-ALH--------------LEHLGVKLTKL----TEDQAK-----------YLGLPIEGP 710
+L L L + L K DQ++ LP+ P
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 711 YKPDHYRY 718
+ H
Sbjct: 427 F---HSHL 431
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 45.4 bits (108), Expect = 4e-05
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
L G+ ++ G G +G+ A G VI A E T +A
Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH-ETVAFTATADALATAN 193
Query: 406 IFVTT------TGCKDIIRGEHFLQMRDDAIVCNIG 435
V T + E F Q + ++ NIG
Sbjct: 194 FIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227
Score = 35.7 bits (83), Expect = 0.046
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
L G+ ++ G G +G+ A G VI
Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGMHVI 164
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 43.5 bits (102), Expect = 1e-04
Identities = 11/70 (15%), Positives = 23/70 (32%)
Query: 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAA 401
+ + VA++ G +G + + + EI P + G +T +
Sbjct: 6 KNDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWI 65
Query: 402 KEGGIFVTTT 411
E + V
Sbjct: 66 DEADVVVLAL 75
Score = 33.5 bits (76), Expect = 0.21
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 258 GLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDE 317
G+ + + + VA++ G +G + + + EI P + G L +
Sbjct: 1 GMVKDKNDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTD 60
Query: 318 EVAAL 322
+
Sbjct: 61 GDGWI 65
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 40.0 bits (94), Expect = 0.002
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-----VTEIDPINALQASMEGYEVTTMEEA 400
L G+ ++ G G +G+ A + + FG +V+ E + + Y++ + +
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQV------YQLPALNKM 191
Query: 401 AKEGGIFV-------TTTGCKDIIRGEHFLQMRDDAIVCNIG 435
+ + V T + F + AI+ N+G
Sbjct: 192 LAQADVIVSVLPATRETHH---LFTASRFEHCKPGAILFNVG 230
Score = 35.4 bits (82), Expect = 0.055
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
L G+ ++ G G +G+ A + + FG +V+
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVL 167
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 39.1 bits (92), Expect = 0.003
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 337 DQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-- 393
++++ + K +V +G+ A L G+ V + + L+ S Y
Sbjct: 8 HHHHHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-ELLKRSGHRYVVC 66
Query: 394 -VTTMEEAAKE--GG--IFVTTTGCKDIIRGEHFLQMRDDA 429
+ + E I V G + F ++ ++
Sbjct: 67 DLRKDLDLLFEKVKEVDILVLNAG---GPKAGFFDELTNED 104
Score = 33.7 bits (78), Expect = 0.16
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 264 DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD-EEVAA 321
++ + K +V +G+ A L G+ V + + ++ D +
Sbjct: 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLD 73
Query: 322 LHLEHLG 328
L E +
Sbjct: 74 LLFEKVK 80
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 38.3 bits (90), Expect = 0.006
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 340 KYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYEVTTME 398
K + LAGK + G+G +G G +V+ D +A + ++E
Sbjct: 134 KIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAY--DILDIREKAEKINAKAVSLE 191
Query: 399 EAAKEGGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
E K ++ + K II F M+D+ I+ N
Sbjct: 192 ELLKNSD-VISLHVTVSKDAKPIIDYPQFELMKDNVIIVN 230
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 38.7 bits (91), Expect = 0.006
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 339 AKYLDI-MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM 397
+ + L G +V G G VG A G++++V + D A G+ +
Sbjct: 165 VAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVAL 224
Query: 398 EE 399
E+
Sbjct: 225 ED 226
Score = 34.8 bits (81), Expect = 0.088
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
L G +V G G VG A G++++V + D
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT 208
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 38.4 bits (90), Expect = 0.007
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
+ G +V G G +G + + +G+ V+ T P
Sbjct: 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 202
Score = 38.4 bits (90), Expect = 0.007
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381
+ G +V G G +G + + +G+ V+ T P
Sbjct: 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 202
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 38.0 bits (89), Expect = 0.009
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 20/107 (18%)
Query: 339 AKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTME 398
A+ L + + G G+VG L G R ++ DP A + + T++
Sbjct: 110 AERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC--DPP--RAARGDEGDFRTLD 165
Query: 399 EAAKE------------GGIFVTTTGCKDIIRGEHFLQMRDDAIVCN 433
E +E G + T + +++ AI+ N
Sbjct: 166 ELVQEADVLTFHTPLYKDGPYKT----LHLADETLIRRLKPGAILIN 208
Score = 33.4 bits (77), Expect = 0.25
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 259 LKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYELDE 317
L L + + G G+VG L G R ++ DP A + LDE
Sbjct: 109 LAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC--DPPRAARGDEGDFRTLDE 166
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 37.9 bits (89), Expect = 0.009
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 337 DQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYEVT 395
++ K++ L GK + G G +G+ A ++ FG + I DP I+ ++ G +
Sbjct: 154 ERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY--DPIISPEVSASFGVQQL 211
Query: 396 TMEEAAKEGGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
+EE F+T ++ F Q + V N
Sbjct: 212 PLEEIWPLCD-FITVHTPLLPSTTGLLNDNTFAQCKKGVRVVN 253
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 36.7 bits (85), Expect = 0.010
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 351 AVVAGYGDVGKGCAQSLRL-FGSRVIVTEIDPINALQASMEGYEV 394
++ G G +G G LR +G + EI A Q EG V
Sbjct: 42 VLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNV 86
Score = 34.7 bits (80), Expect = 0.048
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 272 AVVAGYGDVGKGCAQSLRL-FGSRVIVTEIDPINALQASMEGYE 314
++ G G +G G LR +G + EI A Q EG
Sbjct: 42 VLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRN 85
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 37.5 bits (88), Expect = 0.011
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 337 DQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYEVT 395
+ + + I L GK + G+G +G A+ G +++ DP N +A +
Sbjct: 131 AKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLY--DPYPNEERAKEVNGKFV 188
Query: 396 TMEEAAKEGGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
+E KE VT +I E M+ AI+ N
Sbjct: 189 DLETLLKESD-VVTIHVPLVESTYHLINEERLKLMKKTAILIN 230
Score = 28.3 bits (64), Expect = 9.7
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 17/70 (24%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH 326
L GK + G+G +G A+ G +++ DP +EE A +
Sbjct: 140 LEGKTIGIIGFGRIGYQVAKIANALGMNILLY--DPY-----------PNEERA----KE 182
Query: 327 LGVKLTKLTE 336
+ K L
Sbjct: 183 VNGKFVDLET 192
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLR 368
+ + +L +E V + + G V+ G G +G L+
Sbjct: 180 GVYEGDRLFLAGSL-VEPTSVAYNAVIVRGGG----IRPGDNVVILGGGPIGLAAVAILK 234
Query: 369 LFG-SRVIVTEIDP 381
G S+VI++E
Sbjct: 235 HAGASKVILSEPSE 248
Score = 35.8 bits (83), Expect = 0.047
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
G V+ G G +G L+ G S+VI++E
Sbjct: 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE 248
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 37.7 bits (88), Expect = 0.013
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 324 LEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV------T 377
L LG ++ A L GK V+ G G G ++R G +
Sbjct: 14 LAQLGKCRFMGRDEFADGASY-LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAI 72
Query: 378 EIDPINALQASMEGYEVTTMEEAAKEG 404
+ +A+ G++V T EE +
Sbjct: 73 AEKRASWRKATENGFKVGTYEELIPQA 99
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 36.5 bits (85), Expect = 0.022
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 31/107 (28%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-----------VTEIDPINALQASMEGYEV 394
+ G G +G A+SL+ +G + V L+A + V
Sbjct: 137 REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRV 196
Query: 395 ------TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIG 435
T + T G II E Q+ D A V N+
Sbjct: 197 LINLLPNTAQ-----------TVG---IINSELLDQLPDGAYVLNLA 229
Score = 33.8 bits (78), Expect = 0.18
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
+ G G +G A+SL+ +G +
Sbjct: 137 REEFSVGIMGAGVLGAKVAESLQAWGFPLR 166
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 36.3 bits (85), Expect = 0.028
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 338 QAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381
+ + L G V G G+V K + L G++++VT+++
Sbjct: 163 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK 206
Score = 34.8 bits (81), Expect = 0.097
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
G + + + L G V G G+V K + L G++++VT+++
Sbjct: 156 RGMKAAA---KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK 206
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 36.4 bits (85), Expect = 0.029
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
GK + GYG +G G V D N L +V + +
Sbjct: 143 ARGKKLGIIGYGHIGTQLGILAESLGMYVYFY--DIENKLPLGN-ATQVQHLSDLLNMSD 199
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
V+ K+++ + M+ +++ N
Sbjct: 200 -VVSLHVPENPSTKNMMGAKEISLMKPGSLLIN 231
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 36.5 bits (85), Expect = 0.030
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 20/107 (18%)
Query: 339 AKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTME 398
A+ LA + V G G VG + LR G +V+V DP QA E ++E
Sbjct: 107 AEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC--DPP--RQAREPDGEFVSLE 162
Query: 399 EAAKE------------GGIFVTTTGCKDIIRGEHFLQMRDDAIVCN 433
E G T + ++ +R + N
Sbjct: 163 RLLAEADVISLHTPLNRDGEHPT----RHLLDEPRLAALRPGTWLVN 205
Score = 30.3 bits (69), Expect = 2.0
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 259 LKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYELDE 317
+ LA + V G G VG + LR G +V+V DP A + E L+
Sbjct: 106 MAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC--DPPRQAREPDGEFVSLER 163
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 35.7 bits (83), Expect = 0.044
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 258 GLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
A K ++ G G +G Q G V +I
Sbjct: 152 AFHLAQG--CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISS 195
Score = 35.3 bits (82), Expect = 0.054
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 381
K ++ G G +G Q G V +I
Sbjct: 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISS 195
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 35.8 bits (83), Expect = 0.047
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 337 DQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYEVT 395
++ + + GK V G G +G+ AQ + FG+ V+ DP ++ +A+ G E+
Sbjct: 131 KRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAY--DPYVSPARAAQLGIELL 188
Query: 396 TMEEAAKEGGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
++++ F++ T +I E + + I+ N
Sbjct: 189 SLDDLLARAD-FISVHLPKTPETAGLIDKEALAKTKPGVIIVN 230
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 35.0 bits (80), Expect = 0.051
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFV 408
V + G GD GK + G V+ +P + G EV EAA + V
Sbjct: 21 VVCIF-GTGDFGKSLGLKMLQCGYSVVFGSRNPQVS-SLLPRGAEVLCYSEAASRSDVIV 78
Query: 409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHFDC 439
+ ++ ++ +
Sbjct: 79 LAVHREHYDFLAELADSLKGRVLIDVSNNQK 109
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 35.3 bits (82), Expect = 0.054
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
+ +V V G G +G+ Q + FG++VI D + +GY V ++++ K+
Sbjct: 144 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVITY--DIFRNPELEKKGYYVDSLDDLYKQAD 201
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
+ ++ +I E +M+ D ++ N
Sbjct: 202 V-ISLHVPDVPANVHMINDESIAKMKQDVVIVN 233
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 35.3 bits (82), Expect = 0.055
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
L V G G +G A FG +V+ D + +G T+++E KE
Sbjct: 139 LNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCY--DVVKREDLKEKGCVYTSLDELLKESD 196
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
+ ++ T +I E M+D + N
Sbjct: 197 V-ISLHVPYTKETHHMINEERISLMKDGVYLIN 228
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 35.3 bits (82), Expect = 0.057
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
++GK ++ G G +G + G VIV+E
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD 202
Score = 35.3 bits (82), Expect = 0.057
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 381
++GK ++ G G +G + G VIV+E
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD 202
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 34.6 bits (79), Expect = 0.064
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFV 408
KV ++ G GD + A L G +V+V +P + +VT EEA +
Sbjct: 30 KVGIL-GSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIF 88
Query: 409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHF 437
+ I+ ++ +
Sbjct: 89 VAVFREHYSSLCSLSDQLAGKILVDVSNP 117
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 33.9 bits (78), Expect = 0.064
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 273 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV 319
+V G+ + L G V V P + ++ + + +V
Sbjct: 7 IVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADV 53
Score = 32.4 bits (74), Expect = 0.23
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 352 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381
+V G+ + L G V V P
Sbjct: 7 IVCGHSILAINTILQLNQRGQNVTVISNLP 36
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 34.6 bits (80), Expect = 0.067
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 273 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL------DEEVAALHLEH 326
V+ G+ + C + LR GS V V D + G LE
Sbjct: 13 VICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSD----LEK 66
Query: 327 LGVK 330
V+
Sbjct: 67 ANVR 70
Score = 33.9 bits (78), Expect = 0.14
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 352 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV----TTMEEAAKEGGI 406
V+ G+ + C + LR GS V V D + G T ++ +
Sbjct: 13 VICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANV 69
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 35.3 bits (82), Expect = 0.068
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 266 MLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
+ G +V G G +G + G ++V+VT++
Sbjct: 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 206
Score = 35.3 bits (82), Expect = 0.068
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 381
+ G +V G G +G + G ++V+VT++
Sbjct: 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 206
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 34.9 bits (81), Expect = 0.075
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFG-S 372
+ E A+ LE L V L + G ++ G G +G + G
Sbjct: 153 NMSYENGAM-LEPLSVAL------AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGAC 205
Query: 373 RVIVTEIDP 381
+++T+ID
Sbjct: 206 PLVITDIDE 214
Score = 34.9 bits (81), Expect = 0.087
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 266 MLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
+ G ++ G G +G + G +++T+ID
Sbjct: 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE 214
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 34.5 bits (80), Expect = 0.086
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG 404
++ G+ V G G++G + L G++V + ++EEA +E
Sbjct: 121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGF-----SRTPKEGPWRFTNSLEEALREA 175
Query: 405 GIFVT-----TTGCKDIIRGEHFLQMRDDAIVCNIG 435
+ +++ +H M +DA+ N+G
Sbjct: 176 R-AAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 210
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 34.9 bits (81), Expect = 0.088
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 266 MLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
++GK ++ G G +G A +R G ++V++ +P
Sbjct: 162 GVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199
Score = 34.9 bits (81), Expect = 0.088
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 381
++GK ++ G G +G A +R G ++V++ +P
Sbjct: 162 GVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 34.4 bits (80), Expect = 0.095
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM------ 397
+G A+V AG G +G+ ++L G++V+ + + + E + +
Sbjct: 5 FSGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGD 63
Query: 398 ----EEAAKEGG---IFVTTTGCKDIIRGEHFLQMRDDA 429
E+A G + V ++ + FL++ +A
Sbjct: 64 WDATEKALGGIGPVDLLVNNAA---LVIMQPFLEVTKEA 99
Score = 31.3 bits (72), Expect = 0.78
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG 312
+G A+V AG G +G+ ++L G++V+ + + + E
Sbjct: 5 FSGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC 51
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 34.5 bits (80), Expect = 0.11
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 258 GLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
G+ + AG + G G +G Q RL G + VI++
Sbjct: 174 GVDLSGI--KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA 217
Score = 34.1 bits (79), Expect = 0.13
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 347 AGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 381
AG + G G +G Q RL G + VI++
Sbjct: 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA 217
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 34.1 bits (79), Expect = 0.11
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 26/110 (23%)
Query: 343 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDP------INALQASMEGYEVT 395
D+ + GK+AVV +G A L G+R+++ + + + + + G +V
Sbjct: 2 DLGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVD 61
Query: 396 TME-------------EAAKEGG---IFVTTTGCKDIIRGEHFLQMRDDA 429
+ E A++ G I V +TG R F+++ +
Sbjct: 62 IVAGDIREPGDIDRLFEKARDLGGADILVYSTG---GPRPGRFMELGVED 108
Score = 31.7 bits (73), Expect = 0.61
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 264 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAAL 322
D+ + GK+AVV +G A L G+R++ + + +L+ + +
Sbjct: 2 DLGIQGKLAVVTAGSSGLGFASALELARNGARLL------LFSRNRE----KLEAAASRI 51
Query: 323 HLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDV 359
G ++ + D + DI G
Sbjct: 52 ASLVSGAQVDIVAGDIREPGDI--DRLFEKARDLGGA 86
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 34.3 bits (79), Expect = 0.13
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 314 ELDEEVAALHLEHLGV--------KLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQ 365
+ E++ L + L + D L + +V G G +G
Sbjct: 140 KSIEDIGIL-AQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTL 198
Query: 366 SLRLFGSRVIV-TEIDPINALQASMEGYEVTTMEEAAKE 403
R +G V + +P Q +E + +
Sbjct: 199 LFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGY 237
Score = 32.8 bits (75), Expect = 0.35
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASMEGYELDEEVAALHLE 325
L + +V G G +G R +G + +P Q +E + + ++ +
Sbjct: 179 LNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYD 238
Query: 326 HL 327
L
Sbjct: 239 KL 240
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 32.6 bits (75), Expect = 0.14
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 352 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV----TTMEEAAKEGGI 406
+V G G G + L G +V+ + EG++ T E + +
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDL 68
Score = 30.7 bits (70), Expect = 0.68
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 273 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE------LDEEVAALHLEH 326
+V G G G + L G +V+ + EG++ DE
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESF----YRS 65
Query: 327 LGVK 330
L ++
Sbjct: 66 LDLE 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.16
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 282 KGCAQSLRLFGSRVIVTEID--PINALQASME 311
K SL+L+ D P A++A+ME
Sbjct: 23 KKLQASLKLYAD-------DSAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.16
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 361 KGCAQSLRLFGSRVIVTEID--PINALQASME 390
K SL+L+ D P A++A+ME
Sbjct: 23 KKLQASLKLYAD-------DSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.55
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 299 EIDPINALQASMEGYELDEEVAALHLEHLGVKLT 332
E + LQAS++ Y D A L +K T
Sbjct: 18 EKQALKKLQASLKLYADDSAPA------LAIKAT 45
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 33.7 bits (78), Expect = 0.16
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 345 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
ML GKVAVV + G +G G A +L G+ +++ ++ A
Sbjct: 1 MLKGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEK--------VRAGLAA 51
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAI 430
+ G+ V G D+ +GE + D+A+
Sbjct: 52 QHGVKVLYDGA-DLSKGEAVRGLVDNAV 78
Score = 32.6 bits (75), Expect = 0.40
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 266 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH 323
ML GKVAVV + G +G G A +L G+ +++ ++ G V L+
Sbjct: 1 MLKGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLY 59
Query: 324 LE 325
Sbjct: 60 DG 61
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 33.6 bits (78), Expect = 0.17
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 342 LDIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM-- 397
+++ LAG+ +V AG G +G+G Q+L G+RV+ + E + +
Sbjct: 1 MELFLAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCV 59
Query: 398 --------EEAAKEGG---IFVTTTGCKDIIRGEHFLQMRDDA 429
E A G + V + + FL++ +A
Sbjct: 60 DLGDWEATERALGSVGPVDLLVNNAA---VALLQPFLEVTKEA 99
Score = 30.9 bits (71), Expect = 1.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG 312
LAG+ +V AG G +G+G Q+L G+RV+ + E
Sbjct: 5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC 51
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 33.8 bits (78), Expect = 0.18
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 258 GLKRATDIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP---------INAL 306
GL M + A V G +G A++L G V D + A
Sbjct: 13 GLVPRGSHMSRPQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA 71
Query: 307 QASMEGYELD----EEVAAL 322
++G D +EV A
Sbjct: 72 GHDVDGSSCDVTSTDEVHAA 91
Score = 30.3 bits (69), Expect = 1.8
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 345 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 390
M + A V G +G A++L G V D N A
Sbjct: 21 MSRPQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDG 67
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 33.7 bits (78), Expect = 0.21
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH-- 326
K AVV G G +G A L FG V + E P + A + G L E A H H
Sbjct: 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALP--RVLARVAGEALSEFYQAEHRAHGV 209
Query: 327 ---LGVKLTKLTEDQAKYLDIMLA-GKV----AVVAGYG 357
G + + D K + + G V V+ G G
Sbjct: 210 DLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIG 248
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 33.7 bits (78), Expect = 0.22
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYELDEEVAAL---HL 324
A + G G +G AQ++ G+ + I Q LD + L
Sbjct: 146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ-------LDRDGGLFLKDKL 198
Query: 325 EHLGVKLTKLTEDQAKYLDIMLAGKVAVVA 354
+ LG+K+ T + + ++ + A
Sbjct: 199 DRLGIKI--YTNSNFEEMGDLIRSSCVITA 226
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 33.7 bits (78), Expect = 0.22
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 15/112 (13%)
Query: 256 VDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL 315
+ L++ M K VV G G +G A + R G V V E+ P + A + E+
Sbjct: 132 SEVLRQR---MPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAP--RVMARVVTPEI 186
Query: 316 DEEVAALHLEH-----LGVKLTKLTEDQAKYLDIMLA-GKV----AVVAGYG 357
H GV+ T++ + + ++L+ G VV G G
Sbjct: 187 SSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVG 238
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 33.2 bits (76), Expect = 0.25
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV---TTME 398
D + G V G G G A++ G+ V V + + + G ++
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELK 210
Query: 399 EAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIV 431
E K+ I + T I+ M ++
Sbjct: 211 EHVKDIDICINTIPSM-ILNQTVLSSMTPKTLI 242
Score = 31.3 bits (71), Expect = 1.0
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 263 TDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
TD + G V G G G A++ G+ V V
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 33.5 bits (77), Expect = 0.25
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 263 TDIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA 320
+ + KV ++ AG G +GK + G++V+V N L ++ G + + A
Sbjct: 2 SPVDFKDKVVIITGAGGG-LGKYYSLEFAKLGAKVVV------NDLGGALNGQGGNSKAA 54
Query: 321 A 321
Sbjct: 55 D 55
Score = 28.9 bits (65), Expect = 7.9
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 343 DIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA 400
+ KV ++ AG G +GK + G++V+V N L ++ G +A
Sbjct: 3 PVDFKDKVVIITGAGGG-LGKYYSLEFAKLGAKVVV------NDLGGALNGQGGN--SKA 53
Query: 401 AKE 403
A
Sbjct: 54 ADV 56
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 33.3 bits (77), Expect = 0.26
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
+ GK + GYG++G G V D + L +++E K
Sbjct: 154 VRGKTLGIVGYGNIGSQVGNLAESLGMTVRYY--DTSDKL-QYGNVKPAASLDELLKTSD 210
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
V+ + +I +M+ A + N
Sbjct: 211 -VVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 32.9 bits (76), Expect = 0.34
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
E AK + L G VV G G VG A G RV+
Sbjct: 205 LEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVV 245
Score = 29.8 bits (68), Expect = 3.0
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 248 LYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
L + + L G VV G G VG A G RV+
Sbjct: 202 LLVLEALA-----KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVV 245
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 32.9 bits (76), Expect = 0.36
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
E+ K I L ++ G+G+ G A+ + G++VI
Sbjct: 208 IEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVI 248
Score = 30.2 bits (69), Expect = 3.0
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
E++ + I L ++ G+G+ G A+ + G++VI
Sbjct: 206 ICIEEAV-----KKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVI 248
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 32.7 bits (75), Expect = 0.38
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV-TEIDPINALQASMEGYEVTTMEEAAKEG 404
+ GK + GYG G A +L+ G V V +A G +V ++ A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAA 73
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 32.5 bits (75), Expect = 0.41
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKE 403
L GKV ++ A G +G+ A + G++VI T+I+ + ++E K
Sbjct: 4 LDGKVIILTAAAQG-IGQAAALAFAREGAKVIATDINE-------------SKLQELEKY 49
Query: 404 GGI 406
GI
Sbjct: 50 PGI 52
Score = 30.2 bits (69), Expect = 2.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
L GKV ++ A G +G+ A + G++VI T+I+
Sbjct: 4 LDGKVIILTAAAQG-IGQAAALAFAREGAKVIATDINE 40
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 31.4 bits (72), Expect = 0.41
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV 394
A++ GYG VG + L ++V E + G
Sbjct: 10 ALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA 53
Score = 29.8 bits (68), Expect = 1.3
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL------DEEVAALHLE 325
A++ GYG VG + L ++V E + G +EE+ ++
Sbjct: 10 ALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEI----MQ 65
Query: 326 HLGVKLTKLTEDQAKYL 342
+ + AK+L
Sbjct: 66 LAHL-------ECAKWL 75
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 32.9 bits (76), Expect = 0.41
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
A+ + + + G + G+G+VG A++ G+RV+
Sbjct: 222 AAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVV 262
Score = 29.4 bits (67), Expect = 5.0
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
+ + + G + G+G+VG A++ G+RV+
Sbjct: 220 ITAAAAA-----EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVV 262
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 32.5 bits (75), Expect = 0.42
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----EEVA 320
KVA+V G +G +L +G++V+ +D + + +++D EEV
Sbjct: 12 FTDKVAIVTGGSSG-IGLAVVDALVRYGAKVVSVSLDE-KSDVNVSDHFKIDVTNEEEVK 69
Query: 321 AL 322
Sbjct: 70 EA 71
Score = 29.1 bits (66), Expect = 5.5
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEID 380
KVA+V G +G +L +G++V+ +D
Sbjct: 12 FTDKVAIVTGGSSG-IGLAVVDALVRYGAKVVSVSLD 47
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 32.1 bits (74), Expect = 0.44
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----EEVA 320
KV V+ A G +G G ++ R RV+ T + + D E
Sbjct: 26 NQQKVVVITGASQG-IGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETAD 84
Query: 321 AL 322
+
Sbjct: 85 RI 86
Score = 31.8 bits (73), Expect = 0.70
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 322 LHLEHLGVKLTKLTEDQAKYLDIM-LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTE 378
+H H L + + +M KV V+ A G +G G ++ R RV+ T
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMMRNQQKVVVITGASQG-IGAGLVRAYRDRNYRVVATS 59
Query: 379 IDPINALQASMEGYE--VTTMEEAAK 402
+ + ++ E A +
Sbjct: 60 RSIKPSADPDIHTVAGDISKPETADR 85
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 32.5 bits (75), Expect = 0.50
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEIDPINA 384
+ AK I + V G+G+VG +++ G +V + E D
Sbjct: 199 VRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEG 249
Score = 29.4 bits (67), Expect = 4.5
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEIDPINA 305
RES + I + V G+G+VG +++ G +V + E D
Sbjct: 197 VVVRESA-----KRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEG 249
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 32.2 bits (74), Expect = 0.52
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
L GK + GYG +G+ A + FG RVI + + ++
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAY--TRS--SVDQNVDVISESPADLFRQSD 175
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
FV T + ++ R + + N
Sbjct: 176 -FVLIAIPLTDKTRGMVNSRLLANARKNLTIVN 207
Score = 30.3 bits (69), Expect = 2.1
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 260 KRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYELDE 317
+++ +L GK + GYG +G+ A + FG RVI + +
Sbjct: 113 RQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAY--TRSSVDQNVDVISESPAD 169
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein,
immunogloblin-like fold, beta- sandwich,
endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus
norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Length = 99
Score = 30.3 bits (68), Expect = 0.55
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 404 GGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPT 463
VT IRGE+ D I I +C + W+ + + V +
Sbjct: 20 PWTKVT-------IRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCR-VGQAKNDK 71
Query: 464 SRTKHLTTEALLATCNSLFKY 484
T T FK
Sbjct: 72 GDIIVTTKSGGRGTSTVSFKL 92
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 32.2 bits (74), Expect = 0.56
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYE-VTTMEEAAKE 403
L G+ + GYG +G+ A R FG V+V + +A +G+ + + ++
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVW--GRENSKERARADGFAVAESKDALFEQ 215
Query: 404 GGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
++ + II +M+ A+ N
Sbjct: 216 SD-VLSVHLRLNDETRSIITVADLTRMKPTALFVN 249
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 31.8 bits (73), Expect = 0.63
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 264 DIMLAGKVAVVAG--YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAA 321
+ L GK A+V G G +GK A SL G+ V+ IN + ++E +
Sbjct: 5 HMQLKGKTALVTGSTAG-IGKAIATSLVAEGANVL------INGRREE----NVNETIKE 53
Query: 322 LHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDV 359
+ ++ L + D V+ Y V
Sbjct: 54 IRAQYPDAILQPVVADLGTEQGCQ-----DVIEKYPKV 86
Score = 30.2 bits (69), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 343 DIMLAGKVAVVAG--YGDVGKGCAQSLRLFGSRVIVT 377
+ L GK A+V G G +GK A SL G+ V++
Sbjct: 5 HMQLKGKTALVTGSTAG-IGKAIATSLVAEGANVLIN 40
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 31.8 bits (73), Expect = 0.66
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
+ V G G +G+ AQ G+ VI ++ I ++ + +++E ++
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIE---DYCTQVSLDEVLEKSD 200
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
I +T ++ + +M+D AI+ N
Sbjct: 201 I-ITIHAPYIKENGAVVTRDFLKKMKDGAILVN 232
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 31.8 bits (73), Expect = 0.69
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
L + V G G +G+ + + FG++VI + P+ ++ ++E+ K+
Sbjct: 143 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---PDFDYVSLEDLFKQSD 199
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
+ + II F M+ AIV N
Sbjct: 200 V-IDLHVPGIEQNTHIINEAAFNLMKPGAIVIN 231
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 31.8 bits (73), Expect = 0.70
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 258 GLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
+ R ++ G AVV G G +G Q LR +RVI ++D
Sbjct: 161 AISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDD 206
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 31.9 bits (73), Expect = 0.70
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 252 RESLVD----GLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ 307
RES + G K + K+ +V GYG +G A+ LR G + + + + +
Sbjct: 3 RESYANENQFGFKTINSDI--HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE 60
Query: 308 ASMEGYEL 315
+ + ++
Sbjct: 61 SILANADV 68
Score = 30.4 bits (69), Expect = 2.1
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-------VTTMEEA 400
K+ +V GYG +G A+ LR G + + + + ++ + + + E
Sbjct: 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLET 81
Query: 401 AKE 403
+
Sbjct: 82 IER 84
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 31.8 bits (73), Expect = 0.73
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYE-VTTMEEAAKE 403
+ G+ + G G VG+ A + FG V+ DP ++ G + V+T+++
Sbjct: 166 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFY--DPYLSDGVERALGLQRVSTLQDLLFH 223
Query: 404 GGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
VT +I QMR A + N
Sbjct: 224 SD-CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 31.7 bits (73), Expect = 0.73
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 334 LTEDQAKYLDIM-LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 390
+T +Y ++ L GK A++ A G +G A++ G+R++++ D
Sbjct: 5 MTTTDDRYAGVLRLDGKRALITGATKG-IGADIARAFAAAGARLVLSGRDV--------S 55
Query: 391 GYEVTTMEEAAKEGG 405
+ + G
Sbjct: 56 ELDAARRALGEQFGT 70
Score = 28.7 bits (65), Expect = 6.0
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
L GK A++ A G +G A++ G+R++++ D
Sbjct: 18 LDGKRALITGATKG-IGADIARAFAAAGARLVLSGRDV 54
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 32.1 bits (74), Expect = 0.74
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
T + AK L + GK + G G+VG+ A L G++VI
Sbjct: 197 TREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVI 237
Score = 28.2 bits (64), Expect = 9.2
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
RE + + GK + G G+VG+ A L G++VI
Sbjct: 195 VATREMA-----KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVI 237
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 31.7 bits (73), Expect = 0.75
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME----GYEVTTM 397
L G A+V G +G + L G+RV + + G V
Sbjct: 19 LKGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGS 75
Score = 31.0 bits (71), Expect = 1.4
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE 314
L G A+V G +G + L G+RV + L +E +
Sbjct: 19 LKGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNE-KELDECLEIWR 66
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 31.7 bits (73), Expect = 0.77
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 263 TDIM-LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP---------INALQASM 310
+D + L GK A++ AG G +GK A + G+ V+V++I+ I L
Sbjct: 4 SDNLRLDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQA 62
Query: 311 EGYELD----EEVAAL 322
D +E++AL
Sbjct: 63 FACRCDITSEQELSAL 78
Score = 30.5 bits (70), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 342 LDIM-LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEID 380
D + L GK A++ AG G +GK A + G+ V+V++I+
Sbjct: 4 SDNLRLDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDIN 44
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 31.4 bits (72), Expect = 0.78
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----EEVA 320
L KV +V A G +G+ A+ GS+VI I + + E D ++V
Sbjct: 6 LRDKVVIVTGASMG-IGRAIAERFVDEGSKVIDLSIHDPGEAKY--DHIECDVTNPDQVK 62
Query: 321 AL 322
A
Sbjct: 63 AS 64
Score = 29.8 bits (68), Expect = 2.6
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 387
L KV +V A G +G+ A+ GS+VI I +
Sbjct: 6 LRDKVVIVTGASMG-IGRAIAERFVDEGSKVIDLSIHDPGEAKY 48
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 31.4 bits (72), Expect = 0.79
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 346 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG 404
+ G+V VV G +G+G A L G+ V +T + L+ +EA G
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHL-DTLRV--------VAQEAQSLG 53
Query: 405 G 405
G
Sbjct: 54 G 54
Score = 31.1 bits (71), Expect = 1.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 267 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDP 302
+ G+V VV G +G+G A L G+ V +T
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHL 39
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.7 bits (70), Expect = 0.79
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 352 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV----TTMEEAAKEGGI 406
V G G G + L G V+ +I+ + T E GI
Sbjct: 10 AVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGI 68
Score = 28.8 bits (65), Expect = 3.2
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 273 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE------LDEEVAALHLEH 326
V G G G + L G V+ +I+ + +E L
Sbjct: 10 AVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENE----LLS 65
Query: 327 LGVK 330
LG++
Sbjct: 66 LGIR 69
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 31.3 bits (72), Expect = 0.82
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 266 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAAL 322
+ AGK +V G +G+ AQ+ G+ V + ++ P EG E+ E +
Sbjct: 3 LFAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRP--------EGKEVAEAIGGA 52
Score = 31.3 bits (72), Expect = 0.94
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 345 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
+ AGK +V G +G+ AQ+ G+ V + ++ P EG E A
Sbjct: 3 LFAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRP--------EG-----KEVAEA 48
Query: 403 EGGIFVTT 410
GG F
Sbjct: 49 IGGAFFQV 56
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 31.6 bits (72), Expect = 0.87
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 18/90 (20%)
Query: 250 GCRESLVDGLKRATDIM--LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP--- 302
G E+ G + G+ AVV G +G A G+R++++++D
Sbjct: 10 GTLEAQTQGPGSMDGFLSGFDGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPAL 68
Query: 303 ------INALQASMEGYELD----EEVAAL 322
+ G D +E+ L
Sbjct: 69 EQAVNGLRGQGFDAHGVVCDVRHLDEMVRL 98
Score = 28.5 bits (64), Expect = 7.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 387
G+ AVV G +G A G+R++++++D QA
Sbjct: 29 FDGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQA 71
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 31.4 bits (72), Expect = 0.95
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 24/72 (33%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEIDPINALQASMEGYEVTTMEEA 400
AGKV VV G G +G G R F G+RV++ + D
Sbjct: 7 YAGKVVVVTGGGRG-IGAGIV---RAFVNSGARVVICDKDESGG-------------RAL 49
Query: 401 AKEGG--IFVTT 410
+E +F+
Sbjct: 50 EQELPGAVFILC 61
Score = 29.4 bits (67), Expect = 3.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEID 301
AGKV VV G G +G G R F G+RV++ + D
Sbjct: 7 YAGKVVVVTGGGRG-IGAGIV---RAFVNSGARVVICDKD 42
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 31.4 bits (72), Expect = 1.0
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH 326
K +V G G+ A+ L G+ V V + P DE A L
Sbjct: 7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF------------DENPTAQSLLE 54
Query: 327 LGVKLTKLTEDQAKYLDIMLAGKVAVV 353
G+K+ + L+++ ++
Sbjct: 55 EGIKV----VCGSHPLELLDEDFCYMI 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 31.3 bits (71), Expect = 1.1
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 273 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL------DEEVAALHLEH 326
V+ G+ + C + LR GS V V D + G LE
Sbjct: 119 VICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSD----LEK 172
Query: 327 LGVK 330
V+
Sbjct: 173 ANVR 176
Score = 30.9 bits (70), Expect = 1.4
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 352 VVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV 394
V+ G+ + C + LR GS V V D + G
Sbjct: 119 VICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANF 159
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 31.0 bits (69), Expect = 1.1
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME--------GYEVTTMEEA 400
+VA++ G G++GKG A L G ++V A + E E+A
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61
Query: 401 AKEGGIFVTTT 411
A+ I V T
Sbjct: 62 AEACDIAVLTI 72
Score = 28.3 bits (62), Expect = 8.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 311
+VA++ G G++GKG A L G ++V A + E
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE 43
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 31.1 bits (71), Expect = 1.1
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---GYE-VTTMEEAA 401
+ GK G G +G + L F + ++ AL E G V +EE
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLY--YDYQALPKDAEEKVGARRVENIEELV 219
Query: 402 KEGGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
+ VT G K +I E + + A + N
Sbjct: 220 AQAD-IVTVNAPLHAGTKGLINKELLSKFKKGAWLVN 255
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 30.9 bits (71), Expect = 1.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 267 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQA 308
L KVA+V D +G A+ L G+ V+V+ N +
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRT 54
Score = 30.9 bits (71), Expect = 1.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQA 387
L KVA+V D +G A+ L G+ V+V+ N +
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRT 54
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 31.1 bits (71), Expect = 1.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 258 GLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDP 302
+K+A + G + G G +G Q L++ + VI ++
Sbjct: 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE 221
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 268 AGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVT 298
K ++ AG G +G Q L G++V+VT
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 507
Score = 31.4 bits (71), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 347 AGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVT 377
K ++ AG G +G Q L G++V+VT
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 507
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 30.7 bits (70), Expect = 1.4
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 266 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
+L G+VA+V G +GK + L GS V++ A+ +E+ A
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAA-------DELQANLP 67
Query: 325 EHLGVK 330
+
Sbjct: 68 PTKQAR 73
Score = 29.2 bits (66), Expect = 4.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVT 377
+L G+VA+V G +GK + L GS V++
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIA 48
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 31.0 bits (71), Expect = 1.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
E K+ + L GK +AG+G+V G A+ L G++ +
Sbjct: 217 VEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAV 257
Score = 28.7 bits (65), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
L GK +AG+G+V G A+ L G++ +
Sbjct: 228 LVGKTVALAGFGNVAWGAAKKLAELGAKAV 257
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 19/88 (21%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH 326
L G+ +V G G + + G+ + V + P + E+ +
Sbjct: 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITV--VAP-----------TVSAEINEWEAKG 75
Query: 327 LGVKLTKLTEDQAKYLDIMLAGKVAVVA 354
+L + K + L +V
Sbjct: 76 ------QLRVKRKKVGEEDLLNVFFIVV 97
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 30.6 bits (69), Expect = 1.5
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI--VTEIDPINALQAS-MEGYELDEEVAAL 322
+ G + G+G + +++L G R+I D + A++AS E E +L
Sbjct: 3 AMTGTLLSF-GHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSL 61
Score = 28.3 bits (63), Expect = 7.5
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 377
+ G + G+G + +++L G R+I T
Sbjct: 3 AMTGTLLSF-GHGYTARVLSRALAPQGWRIIGT 34
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 30.5 bits (70), Expect = 1.5
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME----GYEVTTM 397
L K +V G +G + FG+ + + + + G++VT
Sbjct: 12 LKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGS 68
Score = 29.8 bits (68), Expect = 3.2
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 19/83 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---------GYEL 315
L K +V G +G + FG+ + + + + G
Sbjct: 12 LKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVC 70
Query: 316 D----EEVAALH---LEHLGVKL 331
D E L G KL
Sbjct: 71 DASLRPEREKLMQTVSSMFGGKL 93
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 30.6 bits (70), Expect = 1.6
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 264 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQA 308
D+ ++GKVAV+ G +G A+ G+ +++ +A
Sbjct: 2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEA 47
Score = 30.6 bits (70), Expect = 1.6
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 343 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQA 387
D+ ++GKVAV+ G +G A+ G+ +++ +A
Sbjct: 2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEA 47
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 30.7 bits (70), Expect = 1.6
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 345 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
+ K AV+ + G +G A++L G+ +++ + ++ +E A
Sbjct: 22 SMMTKTAVITGSTSG-IGLAIARTLAKAGANIVLNGFGAPDEIRT--------VTDEVAG 72
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAI 430
V D+ + M
Sbjct: 73 LSSGTVLHHPA-DMTKPSEIADMMAMVA 99
Score = 30.7 bits (70), Expect = 1.7
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 258 GLKRATDIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL 315
G + + K AV+ + G +G A++L G+ +++ + ++ +
Sbjct: 14 GTENLYFQSMMTKTAVITGSTSG-IGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAG 72
Query: 316 DEEVAALHLE 325
LH
Sbjct: 73 LSSGTVLHHP 82
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 30.5 bits (70), Expect = 1.8
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME----GYEVTTM 397
L G A+V G +G G + L G+ V + + G++V
Sbjct: 7 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEAS 63
Score = 29.4 bits (67), Expect = 3.4
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE 314
L G A+V G +G G + L G+ V + L + +
Sbjct: 7 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQ-KELNDCLTQWR 54
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei;
transcription, gene regulation; 1.90A {Moorella
thermoacetica} PDB: 2vy9_A 3ztb_A*
Length = 123
Score = 29.3 bits (66), Expect = 1.8
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSR 373
L ++ E L L +T K L I ++ V V ++ L G
Sbjct: 21 TLHDQSVIQFKEEL---LHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLP 77
Query: 374 VIVTEIDPINALQASMEGYEVTTMEEAA 401
++T I P A+ + G ++ M A
Sbjct: 78 FVLTGIKPAVAITLTEMGLDLRGMATAL 105
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 30.7 bits (70), Expect = 1.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 334 LTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
+ K L+I + + AVV+G G+V C Q L +V+
Sbjct: 238 FVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVL 279
Score = 28.8 bits (65), Expect = 7.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
YG +++ LK +I + + AVV+G G+V C Q L +V+
Sbjct: 233 YGLVYFVLEVLKSL-NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVL 279
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 30.2 bits (69), Expect = 1.9
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 258 GLKRATDIM-LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE 314
G + + L +VA+V +G C +L G+RVI+ ++D
Sbjct: 1 GSHMYMEKLRLDNRVAIVTGGAQN-IGLACVTALAEAGARVIIADLDE-----------A 48
Query: 315 LDEEVAALHLEHLGVK 330
+ + L G
Sbjct: 49 MATKAVED-LRMEGHD 63
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU
YEAD, GALM, sugar phosphate, isomerase; 1.90A
{Salmonella typhimurium} PDB: 2htb_A
Length = 309
Score = 30.5 bits (68), Expect = 2.1
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 76 TQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEK 135
A+ A +G + +WK +EE +W T F G L GG V
Sbjct: 47 DHPQVKASFALQGAHLLSWKPVGEEEVLWLSNNT-PFKTGVAL-----RGG-----VPIC 95
Query: 136 YPQF 139
+P F
Sbjct: 96 WPWF 99
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 30.2 bits (69), Expect = 2.1
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 263 TDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAA 321
L+ VAVV G +G + L G+ V D L +A
Sbjct: 2 KPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDG----------ERLRAAESA 51
Query: 322 LHLEHLGVK 330
L G +
Sbjct: 52 LRQRFPGAR 60
Score = 29.4 bits (67), Expect = 4.1
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 343 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQA 387
L+ VAVV G +G + L G+ V D L+A
Sbjct: 3 PYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDG-ERLRA 47
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 30.5 bits (69), Expect = 2.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-ASMEGYEVTTMEEAA--- 401
LA K VV G G GK A + G++V++ AL+ A G + ++ +
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 402 -KEGGIFVTTT 411
++G + TT
Sbjct: 422 PEDGMVLANTT 432
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 30.3 bits (69), Expect = 2.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 334 LTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
TE K + G V+G G+V + + FG+RVI
Sbjct: 218 FTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVI 259
Score = 29.9 bits (68), Expect = 3.5
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
YG LKR + G V+G G+V + + FG+RVI
Sbjct: 213 YGLVYFTEAMLKRH-GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVI 259
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 29.8 bits (68), Expect = 2.5
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKE 403
+ +V G G +GKG A L G+ V++ +P A V +E
Sbjct: 9 FQDRTYLVTGGGSG-IGKGVAAGLVAAGASVMIVGRNPDKLAGA------VQELEALGAN 61
Query: 404 GG 405
GG
Sbjct: 62 GG 63
Score = 29.4 bits (67), Expect = 3.4
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
+ +V G G +GKG A L G+ V++ +P
Sbjct: 9 FQDRTYLVTGGGSG-IGKGVAAGLVAAGASVMIVGRNP 45
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 29.8 bits (68), Expect = 2.5
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEIDPINALQASMEGYELDEEVAA 321
L GKVA+V G VG +L G++V ++I+ A Q EL E
Sbjct: 4 LQGKVALVTGGASG-VGLEVV---KLLLGEGAKVAFSDINE-AAGQQLAA--ELGERSMF 56
Query: 322 LHL 324
+
Sbjct: 57 VRH 59
Score = 29.8 bits (68), Expect = 3.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEID 380
L GKVA+V G VG +L G++V ++I+
Sbjct: 4 LQGKVALVTGGASG-VGLEVV---KLLLGEGAKVAFSDIN 39
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 29.8 bits (68), Expect = 2.5
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 256 VDGLKRATDIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVT 298
++ + M A +VA V G G +G ++ L G V V+
Sbjct: 12 LEAQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVS 55
Score = 29.5 bits (67), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 345 MLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVT 377
M A +VA V G G +G ++ L G V V+
Sbjct: 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVS 55
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 29.8 bits (68), Expect = 2.6
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME------GYELD-- 316
L GK A++ + G +G+ A++ G+ V + +ID A QA+ E ++D
Sbjct: 6 LEGKSALITGSARG-IGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVT 64
Query: 317 --EEVAAL 322
+ + A
Sbjct: 65 RQDSIDAA 72
Score = 29.0 bits (66), Expect = 4.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 387
L GK A++ + G +G+ A++ G+ V + +ID A QA
Sbjct: 6 LEGKSALITGSARG-IGRAFAEAYVREGATVAIADIDIERARQA 48
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 29.8 bits (68), Expect = 2.7
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINA------LQASMEGYELD-- 316
L+G+ A+V G +G A++L G+ V + ++D + A L+ E+D
Sbjct: 10 LSGRKAIVTGGSKG-IGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVT 68
Query: 317 --EEVAAL 322
V A
Sbjct: 69 KRASVDAA 76
Score = 29.1 bits (66), Expect = 4.5
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 390
L+G+ A+V G +G A++L G+ V + ++D + A
Sbjct: 10 LSGRKAIVTGGSKG-IGAAIARALDKAGATVAIADLDVMAAQAVVAG 55
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 29.8 bits (68), Expect = 2.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
L GKVA++ AG G G+G A+ G++V++ + D
Sbjct: 7 LEGKVALITGAGSG-FGEGMAKRFAKGGAKVVIVDRDK 43
Score = 29.8 bits (68), Expect = 2.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 381
L GKVA++ AG G G+G A+ G++V++ + D
Sbjct: 7 LEGKVALITGAGSG-FGEGMAKRFAKGGAKVVIVDRDK 43
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 29.8 bits (68), Expect = 2.8
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----EEVA 320
+GK V AG G +G A + G++V + Q +D +VA
Sbjct: 5 FSGKNVWVTGAGKG-IGYATALAFVEAGAKVTGFDQA-FTQEQYPFATEVMDVADAAQVA 62
Query: 321 AL 322
+
Sbjct: 63 QV 64
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 29.8 bits (68), Expect = 2.8
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 322 LHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEI 379
+H H L + + + L +V +V G G +G+ A+ G+ V+V ++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMDLNQRVCIVTGGGSG-IGRATAELFAKNGAYVVVADV 59
Query: 380 DP 381
+
Sbjct: 60 NE 61
Score = 29.4 bits (67), Expect = 3.7
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
L +V +V G G +G+ A+ G+ V+V +++
Sbjct: 25 LNQRVCIVTGGGSG-IGRATAELFAKNGAYVVVADVNE 61
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 30.0 bits (68), Expect = 2.9
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 262 ATDIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV 319
A+ + G+V +V AG G +G+ A + G+ V+V N L +G
Sbjct: 2 ASPLRFDGRVVLVTGAGGG-LGRAYALAFAERGALVVV------NDLGGDFKGVGKGSSA 54
Query: 320 AA 321
A
Sbjct: 55 AD 56
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 29.8 bits (68), Expect = 2.9
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L K+AV+ A G +G A+ G+RV +T LD +A +
Sbjct: 27 LNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKD----------VLDAAIAEIGG 75
Query: 325 EHLGVK 330
+G++
Sbjct: 76 GAVGIQ 81
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 29.9 bits (68), Expect = 2.9
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 14/67 (20%)
Query: 266 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH 323
G++A+V G G VG+G AQ+L G V++T P + A
Sbjct: 30 SGEGRIALVTGGGTG-VGRGIAQALSAEGYSVVITGRRPDVL-----------DAAAGEI 77
Query: 324 LEHLGVK 330
G
Sbjct: 78 GGRTGNI 84
Score = 29.5 bits (67), Expect = 3.8
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 345 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
G++A+V G G VG+G AQ+L G V++T P + + E +
Sbjct: 30 SGEGRIALVTGGGTG-VGRGIAQALSAEGYSVVITGRRP--------DVLDAAAGEIGGR 80
Query: 403 EGG 405
G
Sbjct: 81 TGN 83
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 29.8 bits (68), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEID 301
L GKVA++ G +G A F G++V++T
Sbjct: 4 LDGKVAIITGGTLG-IGLAIA---TKFVEEGAKVMITGRH 39
Score = 29.8 bits (68), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEID 380
L GKVA++ G +G A F G++V++T
Sbjct: 4 LDGKVAIITGGTLG-IGLAIA---TKFVEEGAKVMITGRH 39
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 29.8 bits (68), Expect = 2.9
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 342 LDIM-LAGKVAVVAGYGDV---GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM 397
LD + L GKV VV G G A+ G+ V +T + +
Sbjct: 13 LDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEE--------NV 64
Query: 398 EEAAKEGGI 406
+E K GI
Sbjct: 65 KELEKTYGI 73
Score = 28.7 bits (65), Expect = 7.0
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 267 LAGKVAVVAGYGDV---GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH 323
L GKV VV G G A+ G+ V +T EE
Sbjct: 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGA----------EENVKEL 67
Query: 324 LEHLGVK 330
+ G+K
Sbjct: 68 EKTYGIK 74
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 29.8 bits (68), Expect = 2.9
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 266 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH 323
L +A+V AG G +G+ + L G+ V ++D A + +
Sbjct: 4 RLRSALALVTGAGSG-IGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 62
Query: 324 LEHLGVKL 331
H +
Sbjct: 63 GNHAAFQA 70
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 29.8 bits (68), Expect = 2.9
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 322 LHLEHLGVKLTKLTEDQAKYLDIM--LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVT 377
+H H L + Y M GKVA+V A G +G +LR G+RV V
Sbjct: 1 MHHHHHHSSGVDLGTEN-LYFQSMQGFEGKVALVTGAAGG-IGGAVVTALRAAGARVAVA 58
Query: 378 EIDP 381
+
Sbjct: 59 DRAV 62
Score = 29.5 bits (67), Expect = 3.5
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----EEVA 320
GKVA+V A G +G +LR G+RV V + A A+ D
Sbjct: 26 FEGKVALVTGAAGG-IGGAVVTALRAAGARVAVADRAV--AGIAADLHLPGDLREAAYAD 82
Query: 321 AL 322
L
Sbjct: 83 GL 84
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 29.9 bits (68), Expect = 2.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 266 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH 323
M+ GKVA+V A G +G+ A++L L G++V + + + + AALH
Sbjct: 4 MVNGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAG----------VQCKAALH 52
Query: 324 LEHLGVK 330
+ K
Sbjct: 53 EQFEPQK 59
Score = 28.3 bits (64), Expect = 7.0
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 345 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP------INALQASMEGYEV 394
M+ GKVA+V A G +G+ A++L L G++V + + + AL E +
Sbjct: 4 MVNGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKT 60
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 29.9 bits (68), Expect = 3.0
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEG 404
L GK G G +GK Q L+ FG ++ + + G + V + E +
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKC 221
Query: 405 GIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
+ T + + E +++ ++ N
Sbjct: 222 D-VIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
Score = 28.8 bits (65), Expect = 6.8
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 16/78 (20%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH 326
L GK G G +GK Q L+ FG ++ D ++ E+ +
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYH--DR----------LQMAPELE----KE 205
Query: 327 LGVKLTKLTEDQAKYLDI 344
G K + + D+
Sbjct: 206 TGAKFVEDLNEMLPKCDV 223
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.8 bits (67), Expect = 3.1
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 255 LVDGLKRATDIMLAGKVAVV-AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 308
V + +A + GK AVV AG G VG A L G+ V++ A A
Sbjct: 105 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAA 159
Score = 28.3 bits (63), Expect = 8.1
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 339 AKYLDIMLAGKVAVV-AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 387
K + GK AVV AG G VG A L G+ V++ A A
Sbjct: 110 VKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAA 159
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 29.4 bits (67), Expect = 3.2
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L+GK ++ G +G A+ G+RV++ ++ A+ EL + HL
Sbjct: 3 LSGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLD-EEGAATAR--ELGDAARYQHL 58
Score = 28.2 bits (64), Expect = 7.8
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEID 380
L+GK ++ G +G A+ G+RV++ ++
Sbjct: 3 LSGKTVIITGGARG-LGAEAARQAVAAGARVVLADVL 38
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 29.4 bits (67), Expect = 3.3
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
LAGKVA+V AG G +G A+ L G V+ +ID +A A+ ++ AA +
Sbjct: 27 LAGKVAIVTGAGAG-IGLAVARRLADEGCHVLCADIDG-DAADAAAT--KIGCGAAACRV 82
Score = 29.4 bits (67), Expect = 4.1
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 381
LAGKVA+V AG G +G A+ L G V+ +ID
Sbjct: 27 LAGKVAIVTGAGAG-IGLAVARRLADEGCHVLCADIDG 63
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 29.4 bits (67), Expect = 3.4
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L GK A+V + G +G A+ L G+RVI+ +I L E L
Sbjct: 7 LTGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRA-----------TLLAESVD-TL 53
Query: 325 EHLGVKLTKLTED 337
G + D
Sbjct: 54 TRKGYDAHGVAFD 66
Score = 29.4 bits (67), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE 393
L GK A+V + G +G A+ L G+RVI+ +I L S++
Sbjct: 7 LTGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRA-TLLAESVDTLT 54
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 29.4 bits (67), Expect = 3.4
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L G+VA+V G +G G AQ L G V+V + E E L
Sbjct: 19 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLE----------EASEAAQKL-T 66
Query: 325 EHLGVKLTKLTED 337
E GV+ D
Sbjct: 67 EKYGVETMAFRCD 79
Score = 29.4 bits (67), Expect = 4.0
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKE 403
L G+VA+V G +G G AQ L G V+V ++E + K
Sbjct: 19 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVA--------SRNLEEASEAAQKLTEKY 69
Query: 404 GG 405
G
Sbjct: 70 GV 71
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 29.7 bits (67), Expect = 3.5
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
AG+ A V G VG G + L G +V + +I + +D+ +A L
Sbjct: 6 FAGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDS----------IDKALATLEA 54
Query: 325 EHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDV 359
E G ++ + D A +A V A +G V
Sbjct: 55 EGSGPEVMGVQLDVASREGFKMAAD-EVEARFGPV 88
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 29.5 bits (67), Expect = 3.6
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAA 401
+ GKVA V A G G+ A L G+ +I +I +T E+ A
Sbjct: 9 VEGKVAFVTGAARG-QGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLA 65
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 29.4 bits (67), Expect = 3.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 311
L G A V AG G +G ++ G+R+I+ + + +A+ E
Sbjct: 9 LDGACAAVTGAGSG-IGLEICRAFAASGARLILIDREAAALDRAAQE 54
Score = 29.4 bits (67), Expect = 3.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 390
L G A V AG G +G ++ G+R+I+ + + +A+ E
Sbjct: 9 LDGACAAVTGAGSG-IGLEICRAFAASGARLILIDREAAALDRAAQE 54
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 29.3 bits (66), Expect = 3.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 342 LDIMLAGKVAVVAGYGD---VGKGCAQSLRLFGSRVIVT 377
L I L GK A +AG D G A+SL G+ ++V
Sbjct: 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVG 40
Score = 28.5 bits (64), Expect = 6.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 265 IMLAGKVAVVAGYGD---VGKGCAQSLRLFGSRVIVT 298
I L GK A +AG D G A+SL G+ ++V
Sbjct: 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVG 40
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 29.4 bits (67), Expect = 3.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEIDPINALQASMEGYELDEEVAA 321
L GKVA+V G +G R G++V+ +I +A EL +
Sbjct: 5 LTGKVALVSGGARG-MGASHV---RAMVAEGAKVVFGDILD-EEGKAMAA--ELADAARY 57
Query: 322 LHL 324
+HL
Sbjct: 58 VHL 60
Score = 28.2 bits (64), Expect = 7.4
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEID 380
L GKVA+V G +G R G++V+ +I
Sbjct: 5 LTGKVALVSGGARG-MGASHV---RAMVAEGAKVVFGDIL 40
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 29.4 bits (67), Expect = 4.0
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSL-RLFGSRVI-VTEID 380
L I V G+G+VG+ A + + GS+V+ V++
Sbjct: 196 AGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR 243
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 29.3 bits (66), Expect = 4.2
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD 316
K+ + G GD+G A+ L G V + A ++ D
Sbjct: 5 KILIA-GCGDLGLELARRLTAQGHEVTGLRRSA-QPMPAGVQTLIAD 49
Score = 28.5 bits (64), Expect = 7.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVT 377
K+ + G GD+G A+ L G V
Sbjct: 5 KILIA-GCGDLGLELARRLTAQGHEVTGL 32
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 29.5 bits (66), Expect = 4.2
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 349 KVAVVAGYGDVGKGCAQSLRLFGSR--VIVTEIDPINALQASMEGYEVTTMEEAAKE 403
+ A+V GYG++G+ Q+LR + +P + ++ + V + E +
Sbjct: 11 RAAIV-GYGNIGRYALQALREAPDFEIAGIVRRNP-AEVPFELQPFRVVSDIEQLES 65
Score = 28.3 bits (63), Expect = 7.9
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 270 KVAVVAGYGDVGKGCAQSLRLFGSR--VIVTEIDPINALQASMEGYELDEEVAAL 322
+ A+V GYG++G+ Q+LR + +P + ++ + + ++ L
Sbjct: 11 RAAIV-GYGNIGRYALQALREAPDFEIAGIVRRNP-AEVPFELQPFRVVSDIEQL 63
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
Length = 357
Score = 29.3 bits (66), Expect = 4.5
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 145 GISEETTTGV---HNLYKMF---KENKLGVPAINVNDSVT 178
G+ + GV L K++ K +PA+NV + +
Sbjct: 5 GVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDS 44
Score = 29.3 bits (66), Expect = 4.5
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 208 GISEETTTGV---HNLYKMF---KENKLGVPAINVNDSVT 241
G+ + GV L K++ K +PA+NV + +
Sbjct: 5 GVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDS 44
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 29.1 bits (66), Expect = 4.6
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM 397
L GK A+V + G +G G AQ L G+ +++ A + + V +
Sbjct: 2 LKGKTALVTGSTSG-IGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAV 54
Score = 29.1 bits (66), Expect = 4.6
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY 313
L GK A+V + G +G G AQ L G+ +++ A + +
Sbjct: 2 LKGKTALVTGSTSG-IGLGIAQVLARAGANIVLNGFGDPAPALAEIARH 49
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 29.1 bits (66), Expect = 4.6
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
L G G +G A L+ +G+ + E ++ G E
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSD 202
Query: 406 IFVT-----TTGCKDIIRGEHFLQMRDDAIVCNIG 435
F+ ++ E +R A++ N
Sbjct: 203 -FILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 29.0 bits (66), Expect = 4.7
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 16/71 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP---------INALQASMEGYEL 315
L VA+V A G +G+ A + G+ V+VT++ I G E
Sbjct: 10 LNDAVAIVTGAAAG-IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLEC 68
Query: 316 D----EEVAAL 322
+ + A+
Sbjct: 69 NVTDEQHREAV 79
Score = 28.3 bits (64), Expect = 8.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 390
L VA+V A G +G+ A + G+ V+VT++ A +
Sbjct: 10 LNDAVAIVTGAAAG-IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA 55
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 29.0 bits (66), Expect = 4.7
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEIDPINALQASMEGYELDEEVAA 321
L KVA++ A G +G + R+ G+RV++ ++ L + +
Sbjct: 9 LENKVAIITGACGG-IGLETS---RVLARAGARVVLADLPE-TDLAGAAA--SVGRGAVH 61
Query: 322 LHL 324
+
Sbjct: 62 HVV 64
Score = 28.6 bits (65), Expect = 6.4
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 23/72 (31%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEIDPINALQASMEGYEVTTMEEA 400
L KVA++ A G +G + R+ G+RV++ ++ E A
Sbjct: 9 LENKVAIITGACGG-IGLETS---RVLARAGARVVLADLP------------ETDLAGAA 52
Query: 401 AKEGG--IFVTT 410
A G +
Sbjct: 53 ASVGRGAVHHVV 64
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 29.1 bits (66), Expect = 4.8
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 15/94 (15%)
Query: 322 LHLEHLGVKLTKLTEDQAKYLDIM-LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTE 378
+H H L + + +M VA++ AG G +G+ A +L G V
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMMNQPSPVALITGAGSG-IGRATALALAADGVTVGALG 59
Query: 379 IDPINALQASMEGYEVTTMEEAAKEGG--IFVTT 410
++ +E GG I +
Sbjct: 60 RTR-TEVEE--------VADEIVGAGGQAIALEA 84
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 29.0 bits (66), Expect = 5.0
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 340 KYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINA--LQASMEGYEVTT 396
K + + ++ G G KG A L + V ++ ++
Sbjct: 109 KQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSH 168
Query: 397 MEEAAKEGGIFVTTT 411
E E I + TT
Sbjct: 169 AESHLDEFDIIINTT 183
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 29.1 bits (66), Expect = 5.1
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 256 VDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL 315
V L+ + + ++ G G +G A + R G V + E L + G +
Sbjct: 133 VQVLRDS---WTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGD--ELLVRVLGRRI 187
Query: 316 DEEVAALHLEH-----LGVKLTKLTED 337
+ L E LG + + +
Sbjct: 188 GAWLRGLLTELGVQVELGTGVVGFSGE 214
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 29.1 bits (66), Expect = 5.2
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L G+VA++ G +G+ G+RV V + L E A
Sbjct: 3 LTGEVALITGGASG-LGRALVDRFVAEGARVAVLDKS----------AERLRELEVAHGG 51
Query: 325 EHLGVK 330
+GV
Sbjct: 52 NAVGVV 57
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate
aldolase, glycolysis; 1.67A {Escherichia coli} SCOP:
c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Length = 358
Score = 28.9 bits (65), Expect = 5.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 145 GISEETTTGV---HNLYKMF---KENKLGVPAINVNDSVT 178
I + GV ++ K+F KEN +PA+N + +
Sbjct: 2 KIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDS 41
Score = 28.9 bits (65), Expect = 5.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 208 GISEETTTGV---HNLYKMF---KENKLGVPAINVNDSVT 241
I + GV ++ K+F KEN +PA+N + +
Sbjct: 2 KIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDS 41
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 28.9 bits (65), Expect = 5.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 266 MLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAA 321
++ G+V +V AG G +G+ A + G+RV+V N + ++G AA
Sbjct: 24 VVDGRVVIVTGAGGG-IGRAHALAFAAEGARVVV------NDIGVGLDGSPASGGSAA 74
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 28.7 bits (65), Expect = 5.5
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----EEVA 320
A +V G +GK + L + ++ + +++ + D +++
Sbjct: 2 NAMANYLVTGGSKG-IGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKADLTKQQDIT 60
Query: 321 AL 322
+
Sbjct: 61 NV 62
Score = 28.3 bits (64), Expect = 7.8
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--------EVT 395
A +V G +GK + L + ++ + +++ ++T
Sbjct: 2 NAMANYLVTGGSKG-IGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKADLTKQQDIT 60
Query: 396 TMEEAAKEGGI 406
+ + K
Sbjct: 61 NVLDIIKNVSF 71
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 29.0 bits (66), Expect = 5.7
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 340 KYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYEVTTM 397
K L + K +V G G + +L G++V + A L V +
Sbjct: 121 KSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSP 180
Query: 398 EEAAKEGGIFVTTT 411
EE + + V TT
Sbjct: 181 EEVIDKVQVIVNTT 194
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 28.7 bits (65), Expect = 5.9
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L+GK A++ A G +GK A + G++V V + + VA +
Sbjct: 30 LSGKRALITGASTG-IGKKVALAYAEAGAQVAVAARHS-----------DALQVVADE-I 76
Query: 325 EHLGVK 330
+G K
Sbjct: 77 AGVGGK 82
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 28.7 bits (65), Expect = 6.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
GKV +V AG +G A L G+ + + +++
Sbjct: 5 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNR 41
Score = 28.7 bits (65), Expect = 6.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP 381
GKV +V AG +G A L G+ + + +++
Sbjct: 5 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNR 41
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 28.9 bits (64), Expect = 6.2
Identities = 11/82 (13%), Positives = 23/82 (28%)
Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
L K ++ G G+VG L G ++ + D ++ + + +E
Sbjct: 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDA 70
Query: 406 IFVTTTGCKDIIRGEHFLQMRD 427
+ D
Sbjct: 71 KRFINPNWDPTKNEIYEYIRSD 92
Score = 28.1 bits (62), Expect = 9.8
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV--TEIDP-INALQASMEGYELDEEVAALH 323
L K ++ G G+VG L G ++ + ++ I + +
Sbjct: 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDA 70
Query: 324 LEHLGVKLTKLTEDQAKYLD 343
+ + +Y+
Sbjct: 71 KRFINPNWDPTKNEIYEYIR 90
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 28.6 bits (65), Expect = 6.3
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 261 RATDIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVT 298
++++ ++A V G G +G Q L G RV+
Sbjct: 5 HHHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAG 43
Score = 28.3 bits (64), Expect = 7.6
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 344 IMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVT 377
++++ ++A V G G +G Q L G RV+
Sbjct: 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAG 43
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 29.1 bits (66), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 335 TEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 375
E+ K L+ L K +V+G G+V + + L G+ V+
Sbjct: 226 AENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVL 266
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 28.7 bits (65), Expect = 6.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 9/40 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEID 301
L KVA++ G +G+ A +LF G++V++ +I
Sbjct: 14 LQDKVAIITGGAGG-IGETTA---KLFVRYGAKVVIADIA 49
Score = 28.7 bits (65), Expect = 6.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 9/40 (22%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEID 380
L KVA++ G +G+ A +LF G++V++ +I
Sbjct: 14 LQDKVAIITGGAGG-IGETTA---KLFVRYGAKVVIADIA 49
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 28.7 bits (65), Expect = 6.4
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP---------INALQASMEGYEL 315
L GK+A+V A YG +G A + G+ ++ +I+ A + GY
Sbjct: 32 LKGKIALVTGASYG-IGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVC 90
Query: 316 D----EEVAAL 322
D + + A+
Sbjct: 91 DVTDEDGIQAM 101
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 28.7 bits (65), Expect = 6.5
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 323 HLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVT 377
H H + + +D L +VA+V G +G+ A L G+ VI T
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGT 58
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 28.8 bits (64), Expect = 6.6
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 262 ATDIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA 308
+ + + AVV G +G + L G V++T D +A
Sbjct: 5 CPNTVTKRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEA 52
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 29.0 bits (65), Expect = 6.8
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 231 VPAINVNDSVTKSKFDNLYGCRESLVDG----LKRATDIMLAGKVAVVAGYGDVGKGCAQ 286
+P+++ + SV + +L G E +V G + K V G+G G AQ
Sbjct: 12 MPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQ 71
Query: 287 SLR------LFGSRVIV 297
+LR V +
Sbjct: 72 NLRDSLAEAKSDIVVKI 88
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 28.6 bits (64), Expect = 6.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 342 LDIMLAGKVAVVAGYGD---VGKGCAQSLRLFGSRVIVT 377
L + L GK A VAG D G + LR G+RV+V
Sbjct: 3 LPVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVG 41
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 28.6 bits (64), Expect = 7.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 342 LDIMLAGKVAVVAGYGD---VGKGCAQSLRLFGSRVIVT 377
I L G+ A VAG D G A+ L G+RV +
Sbjct: 3 FPIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALG 41
Score = 28.2 bits (63), Expect = 8.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 265 IMLAGKVAVVAGYGD---VGKGCAQSLRLFGSRVIVT 298
I L G+ A VAG D G A+ L G+RV +
Sbjct: 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALG 41
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 28.7 bits (65), Expect = 7.2
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYELDEEVAAL---H 323
+ ++ G G +G A L G ++ V + L A
Sbjct: 144 GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL-------LHPAAAKAVQAG 196
Query: 324 LEHLGVKL 331
LE LGV+
Sbjct: 197 LEGLGVRF 204
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 28.7 bits (65), Expect = 7.2
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 15/66 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L GKVA V + G +G A++ G+ V + DE+ L
Sbjct: 32 LKGKVASVTGSSGG-IGWAVAEAYAQAGADVAIWYNSH-----------PADEKAEHL-Q 78
Query: 325 EHLGVK 330
+ GV
Sbjct: 79 KTYGVH 84
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 28.7 bits (65), Expect = 7.2
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHL 324
L+GK +V A G +G+ G+ ++ + + L E VAAL
Sbjct: 4 LSGKTILVTGAASG-IGRAALDLFAREGASLVAVDRE----------ERLLAEAVAALEA 52
Query: 325 EHLGVKL 331
E + V
Sbjct: 53 EAIAVVA 59
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 28.4 bits (64), Expect = 7.3
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKE 403
+L KVA + G G +G A+ G ++ + A
Sbjct: 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL--------PRVLTAARKLAGAT 75
Query: 404 GG 405
G
Sbjct: 76 GR 77
Score = 28.4 bits (64), Expect = 7.4
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 266 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVT 298
+L KVA + G G +G A+ G ++
Sbjct: 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIA 57
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 28.6 bits (65), Expect = 7.3
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-------GYELD- 316
L K+AV+ G +G+ A+ + G+ + + ++ P +A++ + D
Sbjct: 5 LKDKLAVITGGANG-IGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDV 63
Query: 317 ---EEVAAL 322
+V A
Sbjct: 64 SQPGDVEAF 72
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 28.3 bits (64), Expect = 7.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 266 MLAGKVAVV---AGYGDVGKGCAQSLRLFGSRVIVTEID 301
+L GKV +V AG G +G A+ L G+ V++++
Sbjct: 19 LLKGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYH 56
Score = 28.3 bits (64), Expect = 7.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 345 MLAGKVAVV---AGYGDVGKGCAQSLRLFGSRVIVTEID 380
+L GKV +V AG G +G A+ L G+ V++++
Sbjct: 19 LLKGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYH 56
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 28.6 bits (64), Expect = 8.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 264 DIMLAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA 320
+ G+VAVV AG G +G+ A G++V+V N L + G + A
Sbjct: 14 KLRYDGRVAVVTGAGAG-LGREYALLFAERGAKVVV------NDLGGTHSGDGASQRAA 65
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 28.2 bits (64), Expect = 8.5
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP------INALQASMEGYELD-- 316
LAGK A+V A G +GK A L G+ VIV++I+ ++ D
Sbjct: 4 LAGKTALVTGAAQG-IGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADIS 62
Query: 317 --EEVAAL 322
V AL
Sbjct: 63 DPGSVKAL 70
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 28.4 bits (64), Expect = 8.6
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 267 LAGKVAVVAGYGDVGKGCAQSLRL--FGSRVIVTEID-PINALQASMEGYELDEEVAALH 323
+ KV +V G G G+G + +++L G+ +I+ +I I + + EE
Sbjct: 8 VQDKVVLVTG-GARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLE- 65
Query: 324 LEHLGVK 330
+E G K
Sbjct: 66 VEKTGRK 72
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 28.4 bits (64), Expect = 8.7
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 4/74 (5%)
Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFG-- 371
E+ L +E + + L A A V G G +G L++
Sbjct: 140 RSQAELGFL-IEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG 198
Query: 372 -SRVIVTEIDPINA 384
+
Sbjct: 199 YENLYCLGRRDRPD 212
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 28.3 bits (64), Expect = 8.7
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDP---------INALQASMEGYEL 315
KV +V +G G +G+ A++L G+ V+V +I+ I A + +
Sbjct: 7 FENKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAV 65
Query: 316 D----EEVAAL 322
D E A+
Sbjct: 66 DVSDPESAKAM 76
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 28.3 bits (64), Expect = 9.1
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 266 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVT 298
+L G+V +V G +G A++ G+ V++
Sbjct: 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLL 44
Score = 28.3 bits (64), Expect = 9.1
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVT 377
+L G+V +V G +G A++ G+ V++
Sbjct: 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLL 44
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 28.3 bits (64), Expect = 9.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 256 VDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV 297
V L+ +I L GK +V G G +G SL + I
Sbjct: 128 VQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERID 169
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 28.2 bits (64), Expect = 9.2
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 267 LAGKVAVV--AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME----GYELD---- 316
L K ++ A +G +G+ + G+R++ +I+ +A+ +D
Sbjct: 3 LKDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADP 61
Query: 317 EEVAAL 322
V
Sbjct: 62 ASVERG 67
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 28.3 bits (64), Expect = 9.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 20/72 (27%)
Query: 346 LAGKVAVV--AGYGDVGKGCAQSLRLF---GSRVIVTEIDPINALQASMEGYEVTTMEEA 400
L GK+A+V A G +G+ A LF G++V+VT + NAL +E
Sbjct: 6 LEGKIAIVTGASSG-IGRAAA---LLFAREGAKVVVTARNG-NALAE--------LTDEI 52
Query: 401 AKEGG--IFVTT 410
A GG +
Sbjct: 53 AGGGGEAAALAG 64
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 28.3 bits (64), Expect = 9.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG 404
GKVA + G G +GKG L G++ ++ + L+A T E+ + +
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM-DVLKA--------TAEQISSQT 74
Query: 405 GIFVTTTGCKDI 416
G V C D+
Sbjct: 75 GNKVHAIQC-DV 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,112,010
Number of extensions: 706783
Number of successful extensions: 2807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2728
Number of HSP's successfully gapped: 414
Length of query: 718
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 618
Effective length of database: 3,909,693
Effective search space: 2416190274
Effective search space used: 2416190274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)