Query psy790
Match_columns 72
No_of_seqs 232 out of 1261
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:43:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0436 Aspartate/tyrosine/aro 99.5 1E-14 2.2E-19 101.6 5.7 61 2-72 130-190 (393)
2 KOG0257|consensus 99.5 2.2E-14 4.7E-19 100.5 5.2 66 2-72 134-199 (420)
3 COG1168 MalY Bifunctional PLP- 99.5 1.4E-13 3.1E-18 95.6 5.8 61 2-72 124-185 (388)
4 PRK09147 succinyldiaminopimela 99.4 1.4E-13 3.1E-18 94.6 5.2 60 2-72 134-193 (396)
5 PRK13355 bifunctional HTH-doma 99.4 3.4E-13 7.4E-18 96.1 5.8 59 2-71 249-307 (517)
6 PLN02368 alanine transaminase 99.4 4.2E-13 9.2E-18 93.8 5.3 60 2-72 172-237 (407)
7 PRK07681 aspartate aminotransf 99.4 6.1E-13 1.3E-17 91.7 5.7 59 2-71 134-192 (399)
8 PRK07366 succinyldiaminopimela 99.4 8.9E-13 1.9E-17 90.4 5.9 59 2-71 133-191 (388)
9 PRK08068 transaminase; Reviewe 99.4 8.8E-13 1.9E-17 90.5 5.7 59 2-71 135-193 (389)
10 TIGR03538 DapC_gpp succinyldia 99.4 8.2E-13 1.8E-17 90.8 5.3 58 3-71 134-191 (393)
11 PRK06290 aspartate aminotransf 99.4 1.2E-12 2.5E-17 91.2 5.7 59 2-71 147-205 (410)
12 PTZ00377 alanine aminotransfer 99.4 9E-13 2E-17 93.2 5.1 60 2-72 180-245 (481)
13 PRK01688 histidinol-phosphate 99.4 1.6E-12 3.4E-17 88.6 6.0 57 2-72 116-172 (351)
14 TIGR03540 DapC_direct LL-diami 99.4 1.4E-12 3E-17 89.2 5.5 59 2-71 132-190 (383)
15 PRK05942 aspartate aminotransf 99.4 1.5E-12 3.4E-17 89.5 5.6 58 3-71 139-196 (394)
16 PRK07324 transaminase; Validat 99.3 2.1E-12 4.6E-17 88.6 5.6 59 2-71 121-179 (373)
17 PLN00143 tyrosine/nicotianamin 99.3 2.9E-12 6.2E-17 88.9 6.2 58 3-71 139-196 (409)
18 TIGR03537 DapC succinyldiamino 99.3 1.9E-12 4.1E-17 87.9 5.1 59 2-71 104-162 (350)
19 PLN02187 rooty/superroot1 99.3 2.8E-12 6.1E-17 90.7 6.2 60 2-72 172-231 (462)
20 PRK09276 LL-diaminopimelate am 99.3 3.3E-12 7.1E-17 87.4 6.2 58 3-71 135-192 (385)
21 PLN02231 alanine transaminase 99.3 1.9E-12 4.1E-17 93.2 5.1 59 3-72 234-298 (534)
22 PRK02610 histidinol-phosphate 99.3 3.3E-12 7.1E-17 87.5 5.8 59 2-72 133-195 (374)
23 PRK06207 aspartate aminotransf 99.3 3.5E-12 7.7E-17 88.4 5.4 62 2-71 143-204 (405)
24 COG0079 HisC Histidinol-phosph 99.3 4.6E-12 1E-16 87.6 5.9 57 2-72 116-172 (356)
25 PRK01533 histidinol-phosphate 99.3 5.2E-12 1.1E-16 86.8 6.1 57 2-72 122-178 (366)
26 KOG0259|consensus 99.3 5.4E-12 1.2E-16 88.3 5.9 60 2-72 167-226 (447)
27 PRK04870 histidinol-phosphate 99.3 4.6E-12 9.9E-17 85.9 5.3 58 2-72 122-180 (356)
28 PRK07337 aminotransferase; Val 99.3 5.8E-12 1.3E-16 86.4 5.7 58 3-71 132-189 (388)
29 PRK09275 aspartate aminotransf 99.3 7.2E-12 1.6E-16 90.4 6.4 55 6-71 213-267 (527)
30 PRK06348 aspartate aminotransf 99.3 7E-12 1.5E-16 86.1 5.7 58 3-71 131-188 (384)
31 PTZ00433 tyrosine aminotransfe 99.3 7.5E-12 1.6E-16 86.8 5.7 59 2-71 145-203 (412)
32 PLN02450 1-aminocyclopropane-1 99.3 8E-12 1.7E-16 88.5 6.0 57 4-71 155-217 (468)
33 PLN00145 tyrosine/nicotianamin 99.3 9.6E-12 2.1E-16 87.1 6.3 58 3-71 159-216 (430)
34 PLN02607 1-aminocyclopropane-1 99.3 8.5E-12 1.8E-16 88.1 6.0 57 4-71 164-226 (447)
35 PRK05166 histidinol-phosphate 99.3 9.9E-12 2.2E-16 85.0 6.1 57 3-72 130-186 (371)
36 PLN00175 aminotransferase fami 99.3 7.8E-12 1.7E-16 87.0 5.5 58 2-71 156-213 (413)
37 PRK08960 hypothetical protein; 99.3 9.8E-12 2.1E-16 85.3 5.8 58 3-71 134-191 (387)
38 PTZ00376 aspartate aminotransf 99.3 7.1E-12 1.5E-16 86.7 5.0 60 2-72 141-203 (404)
39 PLN03026 histidinol-phosphate 99.3 1.4E-11 3E-16 84.9 6.3 57 3-72 145-202 (380)
40 PRK06855 aminotransferase; Val 99.3 1.5E-11 3.2E-16 86.1 6.3 57 4-71 139-197 (433)
41 PRK12414 putative aminotransfe 99.3 9.9E-12 2.1E-16 85.4 5.3 57 3-71 132-188 (384)
42 TIGR03801 asp_4_decarbox aspar 99.3 1.7E-11 3.6E-16 88.5 6.5 61 5-71 206-266 (521)
43 PRK14807 histidinol-phosphate 99.2 1.8E-11 3.8E-16 83.2 6.0 57 3-72 118-175 (351)
44 PRK08912 hypothetical protein; 99.2 1.4E-11 3.1E-16 84.4 5.5 58 2-71 128-185 (387)
45 PRK04635 histidinol-phosphate 99.2 1.8E-11 4E-16 83.2 5.9 56 2-72 119-174 (354)
46 PRK07682 hypothetical protein; 99.2 1.6E-11 3.4E-16 83.9 5.6 58 3-71 123-180 (378)
47 PRK09105 putative aminotransfe 99.2 1.5E-11 3.3E-16 84.5 5.4 56 2-71 136-191 (370)
48 PRK05957 aspartate aminotransf 99.2 2.1E-11 4.5E-16 84.0 6.0 56 3-71 131-186 (389)
49 TIGR01264 tyr_amTase_E tyrosin 99.2 1.7E-11 3.7E-16 84.4 5.5 59 2-71 136-194 (401)
50 PRK09265 aminotransferase AlaT 99.2 2.1E-11 4.6E-16 84.1 5.5 58 3-71 137-194 (404)
51 PRK06108 aspartate aminotransf 99.2 3.3E-11 7.1E-16 82.0 6.2 59 3-71 126-184 (382)
52 PRK08361 aspartate aminotransf 99.2 3.1E-11 6.8E-16 82.9 6.1 58 3-71 135-192 (391)
53 PRK08056 threonine-phosphate d 99.2 2.5E-11 5.3E-16 82.7 5.4 58 2-71 111-168 (356)
54 PLN02376 1-aminocyclopropane-1 99.2 3.4E-11 7.5E-16 86.0 6.3 58 4-72 163-226 (496)
55 PLN02656 tyrosine transaminase 99.2 3.2E-11 7E-16 83.6 5.9 58 3-71 138-195 (409)
56 PRK07550 hypothetical protein; 99.2 3.2E-11 6.9E-16 82.7 5.7 59 2-71 131-189 (386)
57 PRK06836 aspartate aminotransf 99.2 3E-11 6.6E-16 83.3 5.6 58 2-71 137-194 (394)
58 PRK09257 aromatic amino acid a 99.2 3E-11 6.5E-16 83.2 5.1 60 2-72 137-199 (396)
59 PRK06358 threonine-phosphate d 99.2 3.8E-11 8.3E-16 81.9 5.3 58 2-71 110-167 (354)
60 PRK05764 aspartate aminotransf 99.2 4.8E-11 1E-15 81.7 5.7 59 2-71 132-190 (393)
61 PLN02397 aspartate transaminas 99.2 4.1E-11 8.8E-16 83.8 5.4 60 2-72 159-221 (423)
62 PRK09082 methionine aminotrans 99.2 4.3E-11 9.2E-16 82.2 5.4 58 2-71 132-189 (386)
63 PRK14809 histidinol-phosphate 99.2 6.4E-11 1.4E-15 80.5 6.2 58 3-72 124-181 (357)
64 PRK03321 putative aminotransfe 99.2 4.7E-11 1E-15 80.8 5.5 57 3-72 116-172 (352)
65 PRK15481 transcriptional regul 99.2 3.9E-11 8.5E-16 83.5 5.0 56 2-71 182-238 (431)
66 PRK03158 histidinol-phosphate 99.2 7.4E-11 1.6E-15 80.0 6.1 56 3-72 123-178 (359)
67 PRK02731 histidinol-phosphate 99.2 8.3E-11 1.8E-15 79.9 6.0 56 3-72 126-181 (367)
68 PRK07777 aminotransferase; Val 99.2 6.6E-11 1.4E-15 81.1 5.5 59 3-71 127-185 (387)
69 PRK08636 aspartate aminotransf 99.2 6.2E-11 1.3E-15 81.9 5.3 60 2-72 136-202 (403)
70 PRK05839 hypothetical protein; 99.2 5.7E-11 1.2E-15 81.5 5.0 57 2-72 126-182 (374)
71 PRK08637 hypothetical protein; 99.1 1E-10 2.2E-15 80.5 6.2 56 4-71 113-172 (388)
72 PRK03967 histidinol-phosphate 99.1 1E-10 2.2E-15 79.4 5.9 56 2-71 111-166 (337)
73 PRK03317 histidinol-phosphate 99.1 7.5E-11 1.6E-15 80.4 5.3 57 3-72 130-187 (368)
74 PRK07683 aminotransferase A; V 99.1 8.7E-11 1.9E-15 80.8 5.5 57 3-71 131-187 (387)
75 PRK07309 aromatic amino acid a 99.1 9.8E-11 2.1E-15 80.7 5.6 58 2-71 132-192 (391)
76 PRK00950 histidinol-phosphate 99.1 1.4E-10 3E-15 78.5 6.2 57 3-72 129-185 (361)
77 PRK04781 histidinol-phosphate 99.1 1.5E-10 3.1E-15 79.4 6.2 60 3-72 119-179 (364)
78 TIGR01265 tyr_nico_aTase tyros 99.1 1.2E-10 2.5E-15 80.6 5.7 58 3-71 138-195 (403)
79 TIGR01141 hisC histidinol-phos 99.1 1.4E-10 3E-15 78.1 5.7 57 3-72 113-169 (346)
80 PRK07392 threonine-phosphate d 99.1 1.4E-10 2.9E-15 79.1 5.5 59 2-72 114-175 (360)
81 PRK06425 histidinol-phosphate 99.1 1E-10 2.3E-15 79.1 4.9 53 2-71 96-148 (332)
82 PRK06107 aspartate aminotransf 99.1 1.4E-10 3.1E-15 80.1 5.6 58 3-71 135-192 (402)
83 PRK08363 alanine aminotransfer 99.1 1.4E-10 3E-15 79.9 5.4 57 3-71 135-192 (398)
84 PF00155 Aminotran_1_2: Aminot 99.1 9.8E-11 2.1E-15 79.0 4.3 59 2-71 110-174 (363)
85 PRK06225 aspartate aminotransf 99.1 1.7E-10 3.8E-15 78.9 5.4 59 3-71 125-183 (380)
86 PRK09148 aminotransferase; Val 99.1 2.3E-10 5.1E-15 79.3 6.0 58 3-71 134-191 (405)
87 PRK05387 histidinol-phosphate 99.1 3.4E-10 7.4E-15 76.4 5.7 53 3-72 119-171 (353)
88 PRK07568 aspartate aminotransf 99.1 4.2E-10 9.1E-15 77.1 5.9 58 3-71 130-188 (397)
89 PLN02672 methionine S-methyltr 99.0 3.5E-10 7.6E-15 86.9 5.7 60 2-72 795-856 (1082)
90 PRK07908 hypothetical protein; 99.0 5.2E-10 1.1E-14 75.8 5.2 53 2-71 113-165 (349)
91 PRK10874 cysteine sulfinate de 99.0 7.3E-10 1.6E-14 76.2 5.7 57 3-72 131-187 (401)
92 TIGR03392 FeS_syn_CsdA cystein 99.0 9.5E-10 2.1E-14 75.6 6.0 57 3-72 128-184 (398)
93 PRK08153 histidinol-phosphate 99.0 1.1E-09 2.4E-14 75.0 6.1 56 3-72 126-182 (369)
94 PRK07590 L,L-diaminopimelate a 99.0 3.2E-10 7E-15 78.5 3.4 47 9-72 157-203 (409)
95 KOG0256|consensus 99.0 1.5E-09 3.2E-14 76.7 5.5 57 4-71 190-252 (471)
96 TIGR03403 nifS_epsilon cystein 98.9 1.8E-09 3.9E-14 73.8 5.8 57 3-72 111-167 (382)
97 PRK14808 histidinol-phosphate 98.9 1.5E-09 3.3E-14 73.7 5.0 52 2-71 113-164 (335)
98 PRK09295 bifunctional cysteine 98.9 1.7E-09 3.7E-14 74.6 5.1 57 3-72 135-191 (406)
99 TIGR01976 am_tr_V_VC1184 cyste 98.9 3.2E-09 6.8E-14 72.7 6.2 58 3-72 126-183 (397)
100 TIGR03542 DAPAT_plant LL-diami 98.9 9.9E-10 2.1E-14 75.9 3.7 48 8-71 152-199 (402)
101 TIGR01977 am_tr_V_EF2568 cyste 98.9 2.8E-09 6.1E-14 72.3 5.6 56 4-72 109-164 (376)
102 PRK02948 cysteine desulfurase; 98.9 2.7E-09 5.8E-14 72.9 5.2 57 3-72 109-165 (381)
103 PRK08175 aminotransferase; Val 98.9 2.6E-09 5.7E-14 73.6 5.1 55 3-71 133-190 (395)
104 KOG0633|consensus 98.9 4.8E-09 1E-13 71.4 6.1 57 3-72 129-187 (375)
105 PRK13238 tnaA tryptophanase/L- 98.9 3.4E-09 7.3E-14 75.4 5.4 64 3-71 134-204 (460)
106 PRK09440 avtA valine--pyruvate 98.9 2.9E-09 6.2E-14 73.7 4.4 41 30-72 166-206 (416)
107 cd06453 SufS_like Cysteine des 98.9 6.6E-09 1.4E-13 70.5 5.9 57 3-72 110-166 (373)
108 PLN02855 Bifunctional selenocy 98.9 4.9E-09 1.1E-13 72.8 5.4 57 3-72 144-200 (424)
109 PRK08354 putative aminotransfe 98.9 4E-09 8.7E-14 70.8 4.7 38 33-71 106-143 (311)
110 PRK06234 methionine gamma-lyas 98.8 8.3E-09 1.8E-13 71.9 5.8 52 3-72 125-176 (400)
111 cd06451 AGAT_like Alanine-glyo 98.8 7.4E-09 1.6E-13 69.9 5.4 57 3-72 94-151 (356)
112 cd06452 SepCysS Sep-tRNA:Cys-t 98.8 9.2E-09 2E-13 70.0 5.7 60 2-72 100-166 (361)
113 PRK08064 cystathionine beta-ly 98.8 9.2E-09 2E-13 71.5 5.3 52 3-72 114-165 (390)
114 TIGR01979 sufS cysteine desulf 98.8 9.8E-09 2.1E-13 70.5 5.3 57 3-72 130-186 (403)
115 TIGR03235 DNA_S_dndA cysteine 98.8 1.1E-08 2.5E-13 69.2 5.6 56 4-72 110-165 (353)
116 PRK07671 cystathionine beta-ly 98.8 1.3E-08 2.9E-13 70.5 5.9 52 3-72 110-161 (377)
117 PRK05664 threonine-phosphate d 98.8 7.9E-09 1.7E-13 69.9 3.9 47 3-71 104-150 (330)
118 cd00617 Tnase_like Tryptophana 98.8 2E-08 4.4E-13 71.1 5.9 66 3-71 109-179 (431)
119 TIGR03402 FeS_nifS cysteine de 98.8 1.8E-08 3.9E-13 68.8 5.3 56 4-72 108-163 (379)
120 PRK14012 cysteine desulfurase; 98.7 2.2E-08 4.8E-13 69.2 5.5 56 4-72 116-171 (404)
121 PLN02721 threonine aldolase 98.7 2.1E-08 4.7E-13 67.3 5.3 56 3-71 101-164 (353)
122 PRK08133 O-succinylhomoserine 98.7 3E-08 6.6E-13 68.9 5.8 52 3-72 122-173 (390)
123 PRK06959 putative threonine-ph 98.7 1.4E-08 3.1E-13 69.2 4.0 27 45-71 130-156 (339)
124 TIGR02539 SepCysS Sep-tRNA:Cys 98.7 3.5E-08 7.6E-13 67.7 5.7 60 2-72 107-173 (370)
125 TIGR02006 IscS cysteine desulf 98.7 3.3E-08 7.2E-13 68.4 5.6 56 4-72 114-169 (402)
126 PRK08776 cystathionine gamma-s 98.7 3.4E-08 7.5E-13 69.2 5.6 39 34-72 134-172 (405)
127 PRK08861 cystathionine gamma-s 98.7 4.1E-08 8.9E-13 68.6 5.8 39 34-72 127-165 (388)
128 PRK08249 cystathionine gamma-s 98.7 3.8E-08 8.3E-13 68.8 5.6 39 34-72 138-176 (398)
129 PRK07504 O-succinylhomoserine 98.7 3.7E-08 8E-13 68.7 5.4 40 33-72 138-177 (398)
130 PRK07049 methionine gamma-lyas 98.7 4.9E-08 1.1E-12 68.8 5.8 39 34-72 158-201 (427)
131 PRK08248 O-acetylhomoserine am 98.7 3.6E-08 7.8E-13 69.7 5.1 52 3-72 125-176 (431)
132 PRK07503 methionine gamma-lyas 98.7 4.1E-08 8.8E-13 68.6 5.3 52 3-72 126-177 (403)
133 TIGR01328 met_gam_lyase methio 98.7 4.8E-08 1E-12 68.1 5.6 52 3-72 120-171 (391)
134 PRK06460 hypothetical protein; 98.7 4.7E-08 1E-12 67.7 5.5 52 3-72 106-157 (376)
135 KOG0258|consensus 98.7 2.2E-08 4.7E-13 70.7 3.6 57 4-71 180-241 (475)
136 TIGR02080 O_succ_thio_ly O-suc 98.7 5.1E-08 1.1E-12 67.8 5.2 39 34-72 125-163 (382)
137 TIGR01329 cysta_beta_ly_E cyst 98.7 5.1E-08 1.1E-12 67.6 5.2 52 3-72 107-158 (378)
138 PLN02651 cysteine desulfurase 98.6 6.5E-08 1.4E-12 66.0 5.5 56 4-72 110-165 (364)
139 PRK07810 O-succinylhomoserine 98.6 6.2E-08 1.3E-12 67.8 5.3 52 3-72 131-182 (403)
140 PRK00451 glycine dehydrogenase 98.6 8.7E-08 1.9E-12 67.0 5.6 54 4-72 177-230 (447)
141 PRK07811 cystathionine gamma-s 98.6 9.7E-08 2.1E-12 66.4 5.7 39 34-72 135-173 (388)
142 PRK06176 cystathionine gamma-s 98.6 7E-08 1.5E-12 67.1 5.0 39 34-72 123-161 (380)
143 PRK08247 cystathionine gamma-s 98.6 6.7E-08 1.4E-12 66.6 4.7 52 3-72 112-163 (366)
144 PRK08045 cystathionine gamma-s 98.6 8.6E-08 1.9E-12 66.8 5.0 39 34-72 126-164 (386)
145 PLN02242 methionine gamma-lyas 98.6 1.2E-07 2.5E-12 66.8 5.6 39 34-72 151-190 (418)
146 PRK06767 methionine gamma-lyas 98.6 1.1E-07 2.4E-12 66.0 5.4 39 34-72 135-173 (386)
147 PRK07269 cystathionine gamma-s 98.6 7.1E-08 1.5E-12 66.8 4.1 42 31-72 122-163 (364)
148 PRK06084 O-acetylhomoserine am 98.6 1.3E-07 2.8E-12 66.7 5.5 39 34-72 132-170 (425)
149 PRK13479 2-aminoethylphosphona 98.6 1.6E-07 3.4E-12 63.9 5.6 57 3-72 100-158 (368)
150 cd06450 DOPA_deC_like DOPA dec 98.6 8.7E-08 1.9E-12 64.3 4.2 57 3-72 113-175 (345)
151 TIGR01326 OAH_OAS_sulfhy OAH/O 98.6 1.4E-07 3E-12 66.2 5.2 52 3-72 118-169 (418)
152 TIGR01325 O_suc_HS_sulf O-succ 98.6 1.4E-07 3.1E-12 65.3 5.2 52 3-72 115-166 (380)
153 PRK06702 O-acetylhomoserine am 98.6 1.7E-07 3.8E-12 66.5 5.7 53 3-72 122-174 (432)
154 PRK05994 O-acetylhomoserine am 98.5 1.6E-07 3.4E-12 66.2 5.4 52 3-72 124-175 (427)
155 cd06502 TA_like Low-specificit 98.5 1.5E-07 3.3E-12 62.8 4.9 53 4-71 93-152 (338)
156 PRK05939 hypothetical protein; 98.5 1.4E-07 2.9E-12 66.1 4.8 52 3-72 107-158 (397)
157 TIGR01140 L_thr_O3P_dcar L-thr 98.5 2E-07 4.2E-12 63.1 4.8 37 34-71 115-151 (330)
158 PLN02409 serine--glyoxylate am 98.5 2.1E-07 4.5E-12 64.7 5.0 56 2-70 103-162 (401)
159 TIGR01437 selA_rel uncharacter 98.5 2.5E-07 5.4E-12 63.7 5.3 55 3-72 121-176 (363)
160 COG0520 csdA Selenocysteine ly 98.5 2.5E-07 5.5E-12 65.1 5.3 57 3-72 133-189 (405)
161 TIGR02379 ECA_wecE TDP-4-keto- 98.5 2.2E-07 4.7E-12 64.5 4.6 55 3-72 89-143 (376)
162 PRK13520 L-tyrosine decarboxyl 98.5 3.5E-07 7.6E-12 61.9 5.5 57 3-72 122-178 (371)
163 TIGR03812 tyr_de_CO2_Arch tyro 98.5 3.8E-07 8.2E-12 61.9 5.7 58 2-72 123-180 (373)
164 PRK08134 O-acetylhomoserine am 98.5 3.6E-07 7.8E-12 64.7 5.6 52 3-72 125-176 (433)
165 COG1167 ARO8 Transcriptional r 98.5 2.6E-07 5.6E-12 65.7 4.6 57 2-72 196-254 (459)
166 PRK10534 L-threonine aldolase; 98.5 4.5E-07 9.7E-12 60.9 5.5 40 30-71 108-153 (333)
167 PRK09331 Sep-tRNA:Cys-tRNA syn 98.4 4.6E-07 9.9E-12 62.6 5.5 59 3-72 120-185 (387)
168 cd00614 CGS_like CGS_like: Cys 98.4 5E-07 1.1E-11 62.2 5.4 51 4-72 102-152 (369)
169 PLN02509 cystathionine beta-ly 98.4 3.5E-07 7.5E-12 65.4 4.6 51 4-72 194-244 (464)
170 cd00615 Orn_deC_like Ornithine 98.4 7.4E-07 1.6E-11 59.6 5.6 62 3-72 117-180 (294)
171 cd00609 AAT_like Aspartate ami 98.4 7.6E-07 1.6E-11 58.9 5.5 59 2-71 100-158 (350)
172 PRK04366 glycine dehydrogenase 98.4 5.9E-07 1.3E-11 64.1 5.2 55 3-71 179-234 (481)
173 PRK11658 UDP-4-amino-4-deoxy-L 98.4 5E-07 1.1E-11 62.4 4.6 55 3-72 91-145 (379)
174 PRK07865 N-succinyldiaminopime 98.4 3.1E-07 6.8E-12 62.6 3.2 28 44-71 147-174 (364)
175 COG0399 WecE Predicted pyridox 98.4 7.9E-07 1.7E-11 62.4 5.2 55 3-72 92-146 (374)
176 PRK09028 cystathionine beta-ly 98.4 6E-07 1.3E-11 63.0 4.6 39 34-72 135-173 (394)
177 TIGR03301 PhnW-AepZ 2-aminoeth 98.3 8.5E-07 1.8E-11 59.4 4.4 57 3-72 94-152 (355)
178 PRK07812 O-acetylhomoserine am 98.3 1.4E-06 3.1E-11 61.8 5.6 53 3-72 130-182 (436)
179 TIGR02326 transamin_PhnW 2-ami 98.3 1.1E-06 2.4E-11 59.7 4.9 58 2-72 97-156 (363)
180 PRK07050 cystathionine beta-ly 98.3 1.1E-06 2.5E-11 61.3 5.0 52 3-72 126-177 (394)
181 PRK05967 cystathionine beta-ly 98.3 7.7E-07 1.7E-11 62.6 4.0 52 3-72 125-176 (395)
182 PRK08114 cystathionine beta-ly 98.3 1.4E-06 3.1E-11 61.2 4.8 52 3-72 123-174 (395)
183 PF12897 Aminotran_MocR: Alani 98.3 9.8E-07 2.1E-11 62.3 3.8 55 2-71 141-199 (425)
184 cd00613 GDC-P Glycine cleavage 98.2 3.5E-06 7.7E-11 57.6 6.1 54 5-72 132-186 (398)
185 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.2 1.6E-06 3.6E-11 59.7 4.4 56 2-72 88-143 (375)
186 PRK08574 cystathionine gamma-s 98.2 1.7E-06 3.8E-11 60.2 4.2 40 33-72 124-164 (385)
187 COG1104 NifS Cysteine sulfinat 98.2 4.2E-06 9.2E-11 59.0 5.5 57 3-72 112-168 (386)
188 PRK07505 hypothetical protein; 98.2 5.2E-06 1.1E-10 57.5 5.6 39 34-72 168-206 (402)
189 PRK05613 O-acetylhomoserine am 98.1 6.4E-06 1.4E-10 58.5 5.8 53 3-72 130-182 (437)
190 TIGR01324 cysta_beta_ly_B cyst 98.1 5.1E-06 1.1E-10 57.8 5.0 37 36-72 126-162 (377)
191 TIGR03588 PseC UDP-4-keto-6-de 98.1 5.3E-06 1.1E-10 57.0 4.9 55 3-72 87-145 (380)
192 PF01041 DegT_DnrJ_EryC1: DegT 98.1 2.7E-06 5.8E-11 58.4 3.1 55 3-72 83-137 (363)
193 PF01053 Cys_Met_Meta_PP: Cys/ 98.1 6.9E-06 1.5E-10 57.7 5.1 52 3-72 116-167 (386)
194 KOG0053|consensus 98.1 7.1E-06 1.5E-10 58.2 5.0 51 4-72 139-189 (409)
195 TIGR03539 DapC_actino succinyl 98.1 4.1E-06 8.8E-11 57.1 3.5 28 44-71 141-168 (357)
196 cd01494 AAT_I Aspartate aminot 98.1 1.2E-05 2.5E-10 48.2 5.0 59 3-72 60-119 (170)
197 TIGR01788 Glu-decarb-GAD gluta 98.0 1.2E-05 2.7E-10 57.0 5.3 58 3-72 156-213 (431)
198 PRK07582 cystathionine gamma-l 98.0 8.8E-06 1.9E-10 56.2 4.2 49 3-72 111-159 (366)
199 PRK13392 5-aminolevulinate syn 98.0 9.5E-06 2.1E-10 56.3 4.4 30 43-72 176-205 (410)
200 cd00616 AHBA_syn 3-amino-5-hyd 98.0 2.1E-05 4.5E-10 52.8 5.7 55 3-72 76-130 (352)
201 COG2873 MET17 O-acetylhomoseri 98.0 2E-05 4.3E-10 55.7 5.2 53 2-72 122-174 (426)
202 KOG1549|consensus 97.9 2.6E-05 5.7E-10 55.6 5.2 57 3-72 152-208 (428)
203 PRK02769 histidine decarboxyla 97.9 1.6E-05 3.6E-10 55.5 3.9 57 3-72 128-187 (380)
204 PLN02414 glycine dehydrogenase 97.9 3.1E-05 6.7E-10 59.9 5.5 57 3-72 634-693 (993)
205 PRK07179 hypothetical protein; 97.9 3E-05 6.6E-10 53.7 5.1 40 33-72 168-208 (407)
206 TIGR01814 kynureninase kynuren 97.9 2.9E-05 6.3E-10 53.8 4.7 43 30-72 153-198 (406)
207 COG0626 MetC Cystathionine bet 97.8 3.7E-05 8.1E-10 54.4 5.0 52 3-72 124-176 (396)
208 PRK15407 lipopolysaccharide bi 97.8 4.2E-05 9.1E-10 54.3 5.3 55 3-72 129-183 (438)
209 cd06454 KBL_like KBL_like; thi 97.8 5E-05 1.1E-09 50.8 4.7 39 34-72 116-159 (349)
210 PRK05968 hypothetical protein; 97.8 4.2E-05 9E-10 53.3 4.4 51 3-72 124-174 (389)
211 PLN03032 serine decarboxylase; 97.8 3.4E-05 7.4E-10 54.0 3.9 57 3-72 129-188 (374)
212 TIGR00461 gcvP glycine dehydro 97.7 6.2E-05 1.3E-09 58.0 5.3 56 3-72 596-655 (939)
213 PF00266 Aminotran_5: Aminotra 97.7 7E-05 1.5E-09 51.1 4.1 57 3-72 110-166 (371)
214 PRK00854 rocD ornithine--oxo-a 97.6 8E-05 1.7E-09 51.4 4.2 39 33-71 175-217 (401)
215 cd00378 SHMT Serine-glycine hy 97.6 0.00021 4.5E-09 49.2 6.1 59 2-72 127-186 (402)
216 TIGR01821 5aminolev_synth 5-am 97.6 0.00016 3.5E-09 50.0 5.4 39 34-72 162-204 (402)
217 PRK04311 selenocysteine syntha 97.6 0.00021 4.6E-09 51.3 5.8 55 3-72 189-247 (464)
218 COG1448 TyrB Aspartate/tyrosin 97.5 0.00026 5.7E-09 50.0 5.4 60 2-72 137-199 (396)
219 TIGR03531 selenium_SpcS O-phos 97.4 0.00028 6.1E-09 50.6 4.9 61 2-72 168-232 (444)
220 TIGR00474 selA seryl-tRNA(sec) 97.4 0.00044 9.6E-09 49.6 5.9 55 3-72 184-242 (454)
221 PRK06434 cystathionine gamma-l 97.4 0.00023 4.9E-09 50.0 4.3 51 3-72 125-175 (384)
222 KOG0634|consensus 97.4 0.00046 1E-08 49.6 5.7 56 2-71 165-230 (472)
223 TIGR00858 bioF 8-amino-7-oxono 97.4 0.00036 7.8E-09 46.7 4.9 39 34-72 131-173 (360)
224 PF01212 Beta_elim_lyase: Beta 97.4 0.0003 6.5E-09 47.7 4.1 56 3-71 89-151 (290)
225 TIGR01822 2am3keto_CoA 2-amino 97.4 0.0003 6.6E-09 48.1 4.1 40 33-72 152-197 (393)
226 PRK09064 5-aminolevulinate syn 97.3 0.00033 7.2E-09 48.4 4.2 39 34-72 163-205 (407)
227 PRK05937 8-amino-7-oxononanoat 97.3 0.00037 8.1E-09 47.9 4.2 40 33-72 125-170 (370)
228 PRK00011 glyA serine hydroxyme 97.3 0.00062 1.3E-08 47.2 5.1 53 6-72 137-190 (416)
229 PRK04073 rocD ornithine--oxo-a 97.3 0.00039 8.4E-09 48.2 4.1 38 34-71 175-216 (396)
230 KOG1383|consensus 97.2 0.00064 1.4E-08 49.2 4.7 58 2-71 187-244 (491)
231 PTZ00125 ornithine aminotransf 97.1 0.00082 1.8E-08 46.3 4.1 38 34-71 166-208 (400)
232 COG3977 Alanine-alpha-ketoisov 97.1 0.00078 1.7E-08 47.1 3.8 40 30-71 166-205 (417)
233 PRK13393 5-aminolevulinate syn 97.1 0.0014 3E-08 45.5 5.1 39 34-72 162-204 (406)
234 PRK03244 argD acetylornithine 97.1 0.001 2.2E-08 45.9 4.3 38 34-71 172-213 (398)
235 PRK02627 acetylornithine amino 96.9 0.0015 3.2E-08 44.8 4.2 38 34-71 171-209 (396)
236 PRK05958 8-amino-7-oxononanoat 96.9 0.0022 4.7E-08 43.5 4.9 39 34-72 154-195 (385)
237 TIGR01825 gly_Cac_T_rel pyrido 96.9 0.0015 3.3E-08 44.5 4.1 40 33-72 147-190 (385)
238 COG1003 GcvP Glycine cleavage 96.8 0.004 8.6E-08 45.1 5.5 41 3-56 175-215 (496)
239 PRK12566 glycine dehydrogenase 96.8 0.0032 6.9E-08 48.9 5.2 56 3-71 609-667 (954)
240 PLN02822 serine palmitoyltrans 96.7 0.0015 3.4E-08 46.8 3.2 58 4-72 212-272 (481)
241 TIGR03799 NOD_PanD_pyr putativ 96.7 0.0034 7.3E-08 45.8 4.7 57 3-72 227-292 (522)
242 PRK01278 argD acetylornithine 96.7 0.003 6.4E-08 43.5 4.2 39 33-71 163-202 (389)
243 KOG1368|consensus 96.5 0.0077 1.7E-07 42.1 5.2 42 30-71 131-181 (384)
244 TIGR02618 tyr_phenol_ly tyrosi 96.4 0.007 1.5E-07 43.7 4.7 42 30-71 151-197 (450)
245 PRK06939 2-amino-3-ketobutyrat 96.4 0.0092 2E-07 40.7 5.0 39 34-72 157-201 (397)
246 PRK05367 glycine dehydrogenase 96.3 0.01 2.3E-07 46.1 5.4 57 3-72 608-667 (954)
247 TIGR00707 argD acetylornithine 96.3 0.0071 1.5E-07 41.2 4.1 38 34-71 159-197 (379)
248 COG0076 GadB Glutamate decarbo 96.2 0.0071 1.5E-07 43.6 3.8 59 2-72 174-234 (460)
249 PLN03227 serine palmitoyltrans 96.1 0.0095 2.1E-07 41.6 4.1 28 45-72 138-165 (392)
250 PLN02263 serine decarboxylase 96.0 0.012 2.7E-07 42.6 4.5 58 2-72 195-255 (470)
251 PRK05093 argD bifunctional N-s 96.0 0.013 2.8E-07 40.8 4.1 37 34-71 173-211 (403)
252 PRK13580 serine hydroxymethylt 95.8 0.027 5.8E-07 41.2 5.3 42 30-72 204-245 (493)
253 cd00610 OAT_like Acetyl ornith 95.8 0.017 3.6E-07 39.7 4.0 42 30-71 173-221 (413)
254 PLN02724 Molybdenum cofactor s 95.6 0.025 5.5E-07 43.1 4.7 63 3-70 143-217 (805)
255 COG0075 Serine-pyruvate aminot 95.5 0.032 7E-07 39.6 4.8 58 2-72 99-158 (383)
256 PLN02271 serine hydroxymethylt 95.3 0.05 1.1E-06 40.6 5.3 41 30-72 282-323 (586)
257 PLN02880 tyrosine decarboxylas 94.9 0.049 1.1E-06 39.4 4.2 59 3-72 199-266 (490)
258 PF06838 Met_gamma_lyase: Meth 94.8 0.09 1.9E-06 37.5 5.2 56 3-71 125-181 (403)
259 PLN02483 serine palmitoyltrans 94.6 0.1 2.2E-06 37.6 5.3 26 47-72 241-267 (489)
260 PRK13237 tyrosine phenol-lyase 94.5 0.083 1.8E-06 38.4 4.6 41 30-70 158-203 (460)
261 PF00282 Pyridoxal_deC: Pyrido 94.4 0.043 9.3E-07 38.4 3.0 58 2-72 158-221 (373)
262 PLN02624 ornithine-delta-amino 94.4 0.065 1.4E-06 38.5 3.9 38 34-71 210-254 (474)
263 KOG1411|consensus 94.2 0.14 3.1E-06 36.5 5.0 42 30-71 180-224 (427)
264 PTZ00094 serine hydroxymethylt 94.1 0.14 3E-06 36.4 5.0 41 30-72 166-207 (452)
265 KOG2862|consensus 94.0 0.15 3.2E-06 36.0 4.8 57 2-71 111-169 (385)
266 COG2008 GLY1 Threonine aldolas 94.0 0.14 3.1E-06 35.9 4.8 42 30-71 109-156 (342)
267 KOG1412|consensus 93.8 0.19 4.2E-06 35.5 5.1 43 30-72 160-205 (410)
268 PLN02590 probable tyrosine dec 93.7 0.14 3.1E-06 37.7 4.6 59 3-72 247-314 (539)
269 PRK04260 acetylornithine amino 93.7 0.11 2.3E-06 35.8 3.7 38 34-71 154-195 (375)
270 PRK12381 bifunctional succinyl 93.1 0.18 3.8E-06 35.3 4.1 38 33-71 171-210 (406)
271 TIGR00713 hemL glutamate-1-sem 92.9 0.2 4.4E-06 35.0 4.1 36 34-70 181-221 (423)
272 PRK02936 argD acetylornithine 92.1 0.32 7E-06 33.3 4.2 38 34-71 156-194 (377)
273 PRK03080 phosphoserine aminotr 91.9 0.13 2.7E-06 35.7 2.2 49 3-69 111-160 (378)
274 TIGR01885 Orn_aminotrans ornit 91.8 0.32 6.9E-06 33.8 4.0 38 34-71 172-216 (401)
275 cd00611 PSAT_like Phosphoserin 91.7 0.13 2.9E-06 35.3 2.1 50 2-63 106-156 (355)
276 TIGR03246 arg_catab_astC succi 91.6 0.38 8.2E-06 33.5 4.3 38 34-71 168-206 (397)
277 COG1103 Archaea-specific pyrid 90.2 0.78 1.7E-05 32.1 4.7 60 2-72 117-183 (382)
278 TIGR03811 tyr_de_CO2_Ent tyros 90.1 0.63 1.4E-05 34.9 4.4 56 3-71 240-304 (608)
279 TIGR03576 pyridox_MJ0158 pyrid 90.1 0.54 1.2E-05 32.5 3.9 35 34-71 127-161 (346)
280 PRK13034 serine hydroxymethylt 89.9 0.98 2.1E-05 31.9 5.1 41 30-72 152-193 (416)
281 PF01276 OKR_DC_1: Orn/Lys/Arg 87.0 0.53 1.1E-05 33.9 2.2 61 3-72 124-194 (417)
282 PF03841 SelA: L-seryl-tRNA se 86.7 0.24 5.2E-06 35.1 0.4 55 2-71 108-166 (367)
283 PRK04612 argD acetylornithine 85.9 1.8 3.9E-05 30.6 4.4 37 34-70 175-213 (408)
284 PRK15400 lysine decarboxylase 85.7 3.5 7.6E-05 31.7 6.1 65 3-71 253-322 (714)
285 PF00464 SHMT: Serine hydroxym 85.7 2.1 4.5E-05 30.7 4.7 51 8-72 143-194 (399)
286 PLN03226 serine hydroxymethylt 84.7 2.9 6.3E-05 30.3 5.1 41 30-72 167-208 (475)
287 PRK15029 arginine decarboxylas 84.6 4.3 9.3E-05 31.4 6.1 66 3-72 263-338 (755)
288 KOG1360|consensus 84.5 1.6 3.6E-05 32.0 3.7 39 34-72 288-330 (570)
289 PRK13578 ornithine decarboxyla 82.7 3 6.6E-05 32.1 4.7 60 3-71 233-307 (720)
290 COG0112 GlyA Glycine/serine hy 81.8 4.4 9.6E-05 29.3 5.0 41 30-72 150-191 (413)
291 COG4100 Cystathionine beta-lya 81.1 2.5 5.3E-05 30.1 3.4 37 3-52 136-172 (416)
292 PRK15399 lysine decarboxylase 79.6 11 0.00023 29.2 6.6 65 3-71 253-322 (713)
293 PF02347 GDC-P: Glycine cleava 79.2 4.1 8.9E-05 29.5 4.2 47 3-71 176-222 (429)
294 COG3844 Kynureninase [Amino ac 79.1 3.3 7.2E-05 29.6 3.6 42 31-72 152-193 (407)
295 PRK03715 argD acetylornithine 79.0 4.3 9.3E-05 28.5 4.2 39 33-71 167-209 (395)
296 COG1921 SelA Selenocysteine sy 76.7 7.9 0.00017 27.9 4.9 56 2-72 128-184 (395)
297 PRK05355 3-phosphoserine/phosp 75.5 1.5 3.2E-05 30.4 1.1 26 41-66 137-163 (360)
298 TIGR01366 serC_3 phosphoserine 75.4 1 2.2E-05 31.1 0.3 26 42-67 125-150 (361)
299 PF04864 Alliinase_C: Allinase 74.0 1.8 3.8E-05 30.8 1.1 16 46-61 138-153 (363)
300 cd00408 DHDPS-like Dihydrodipi 71.2 17 0.00037 24.1 5.3 27 45-72 123-149 (281)
301 PLN00144 acetylornithine trans 68.5 6.7 0.00014 27.4 3.0 29 34-63 155-184 (382)
302 PLN02955 8-amino-7-oxononanoat 68.3 14 0.00029 27.3 4.6 39 34-72 235-276 (476)
303 PRK09792 4-aminobutyrate trans 67.6 8.2 0.00018 27.3 3.4 36 35-70 183-224 (421)
304 PRK08360 4-aminobutyrate amino 66.6 9.1 0.0002 27.4 3.5 35 36-70 190-230 (443)
305 PF05889 SLA_LP_auto_ag: Solub 66.5 5.7 0.00012 28.5 2.4 60 3-72 119-182 (389)
306 cd00950 DHDPS Dihydrodipicolin 65.5 19 0.0004 24.0 4.6 27 45-72 126-152 (284)
307 PRK03170 dihydrodipicolinate s 65.4 25 0.00054 23.5 5.3 26 46-72 128-153 (292)
308 PRK04147 N-acetylneuraminate l 65.0 22 0.00047 23.9 4.9 26 46-72 131-156 (293)
309 COG1982 LdcC Arginine/lysine/o 64.9 22 0.00049 26.8 5.2 60 4-71 129-191 (557)
310 PLN02417 dihydrodipicolinate s 64.1 22 0.00048 23.9 4.8 25 47-72 127-151 (280)
311 TIGR01364 serC_1 phosphoserine 63.9 7.5 0.00016 26.9 2.6 48 2-63 99-148 (349)
312 TIGR00683 nanA N-acetylneurami 63.7 31 0.00067 23.3 5.5 27 45-72 128-154 (290)
313 TIGR00674 dapA dihydrodipicoli 63.6 22 0.00048 23.8 4.7 26 46-72 125-150 (285)
314 TIGR02313 HpaI-NOT-DapA 2,4-di 60.8 33 0.00072 23.2 5.2 26 45-71 127-152 (294)
315 cd00954 NAL N-Acetylneuraminic 59.4 48 0.001 22.2 5.8 26 46-72 129-154 (288)
316 PRK05367 glycine dehydrogenase 57.1 19 0.00042 28.6 4.0 45 3-71 187-231 (954)
317 COG0156 BioF 7-keto-8-aminopel 55.6 23 0.0005 25.3 3.9 40 33-72 153-198 (388)
318 PF02662 FlpD: Methyl-viologen 55.6 31 0.00066 20.6 3.9 39 31-69 38-81 (124)
319 TIGR03793 TOMM_pelo TOMM prope 55.0 19 0.00041 20.0 2.8 24 47-71 52-75 (77)
320 COG3033 TnaA Tryptophanase [Am 54.9 41 0.00089 24.6 5.0 63 3-70 142-211 (471)
321 PF06084 Cytomega_TRL10: Cytom 54.5 12 0.00026 22.8 2.0 20 43-62 15-34 (150)
322 COG0505 CarA Carbamoylphosphat 51.8 39 0.00084 24.3 4.4 48 4-71 199-247 (368)
323 COG0329 DapA Dihydrodipicolina 51.2 58 0.0013 22.2 5.2 26 46-72 131-156 (299)
324 PRK06541 hypothetical protein; 50.5 36 0.00077 24.6 4.2 36 36-71 208-251 (460)
325 COG0403 GcvP Glycine cleavage 50.0 53 0.0012 24.2 5.0 37 34-71 199-236 (450)
326 KOG2040|consensus 49.9 29 0.00062 27.4 3.7 42 2-56 647-691 (1001)
327 PF09441 Abp2: ARS binding pro 46.8 28 0.0006 22.4 2.8 31 34-69 10-40 (175)
328 cd00953 KDG_aldolase KDG (2-ke 46.6 50 0.0011 22.1 4.2 26 45-71 121-146 (279)
329 PRK00062 glutamate-1-semialdeh 45.7 43 0.00094 23.7 4.0 37 34-71 183-227 (426)
330 PF04214 DUF411: Protein of un 44.2 47 0.001 18.2 3.2 30 32-61 39-68 (70)
331 TIGR02617 tnaA_trp_ase tryptop 44.1 44 0.00096 24.7 3.9 40 30-71 164-210 (467)
332 KOG1496|consensus 44.0 24 0.00053 24.5 2.4 27 35-61 113-139 (332)
333 COG4992 ArgD Ornithine/acetylo 43.6 57 0.0012 23.7 4.3 33 34-66 173-205 (404)
334 PF07179 SseB: SseB protein N- 43.3 34 0.00074 19.3 2.7 38 32-70 86-124 (124)
335 PF02604 PhdYeFM_antitox: Anti 42.5 16 0.00034 19.3 1.1 40 32-71 10-49 (75)
336 cd00952 CHBPH_aldolase Trans-o 41.5 1.1E+02 0.0024 20.9 5.4 26 46-72 136-161 (309)
337 PF06462 Hyd_WA: Propeller; I 41.2 17 0.00037 16.6 1.0 10 53-62 19-28 (32)
338 PRK04013 argD acetylornithine/ 41.0 65 0.0014 22.6 4.2 38 34-71 151-192 (364)
339 COG0816 Predicted endonuclease 40.2 63 0.0014 20.0 3.7 33 33-65 40-73 (141)
340 PF00701 DHDPS: Dihydrodipicol 39.9 33 0.00071 22.9 2.6 26 46-72 128-153 (289)
341 COG2876 AroA 3-deoxy-D-arabino 37.6 47 0.001 23.0 3.0 39 30-69 198-236 (286)
342 TIGR00608 radc DNA repair prot 35.1 41 0.0009 22.1 2.4 33 30-63 143-176 (218)
343 PRK00024 hypothetical protein; 35.0 37 0.0008 22.3 2.2 33 30-63 149-182 (224)
344 PF04002 RadC: RadC-like JAB d 34.7 44 0.00095 19.7 2.3 34 30-64 48-82 (123)
345 TIGR01552 phd_fam prevent-host 33.7 61 0.0013 15.8 2.5 37 34-71 10-46 (52)
346 PF03786 UxuA: D-mannonate deh 33.4 44 0.00095 23.8 2.4 27 45-71 25-51 (351)
347 PRK03906 mannonate dehydratase 33.1 76 0.0017 22.7 3.6 33 38-70 16-48 (385)
348 cd08073 MPN_NLPC_P60 Mpr1p, Pa 32.2 86 0.0019 18.1 3.2 27 29-55 43-70 (108)
349 PF15366 DUF4597: Domain of un 31.9 26 0.00055 18.6 0.8 16 51-66 26-41 (62)
350 PF10678 DUF2492: Protein of u 30.0 50 0.0011 18.5 1.9 33 3-49 31-63 (78)
351 PRK08088 4-aminobutyrate amino 29.7 1.2E+02 0.0026 21.3 4.2 37 35-71 184-226 (425)
352 TIGR00461 gcvP glycine dehydro 29.6 79 0.0017 25.4 3.5 35 34-71 185-219 (939)
353 COG0800 Eda 2-keto-3-deoxy-6-p 29.2 1.6E+02 0.0034 19.6 4.3 46 5-71 37-82 (211)
354 PRK01175 phosphoribosylformylg 29.1 83 0.0018 21.2 3.2 49 7-65 152-209 (261)
355 PF02639 DUF188: Uncharacteriz 29.0 53 0.0011 19.9 2.0 17 55-71 74-90 (130)
356 TIGR00695 uxuA mannonate dehyd 28.8 96 0.0021 22.5 3.5 34 34-70 15-48 (394)
357 cd01740 GATase1_FGAR_AT Type 1 27.7 69 0.0015 21.0 2.5 36 30-65 153-196 (238)
358 COG1312 UxuA D-mannonate dehyd 27.5 1.1E+02 0.0025 21.9 3.7 35 33-70 14-48 (362)
359 PF09286 Pro-kuma_activ: Pro-k 27.1 51 0.0011 19.6 1.7 32 34-71 25-57 (143)
360 TIGR01737 FGAM_synth_I phospho 27.1 82 0.0018 20.5 2.8 34 30-63 145-185 (227)
361 COG1671 Uncharacterized protei 26.7 57 0.0012 20.6 1.9 17 55-71 89-105 (150)
362 PRK12564 carbamoyl phosphate s 26.4 1.2E+02 0.0026 21.5 3.6 37 3-59 196-233 (360)
363 smart00504 Ubox Modified RING 26.2 35 0.00076 17.1 0.8 16 56-71 17-32 (63)
364 PF12098 DUF3574: Protein of u 26.2 59 0.0013 19.1 1.8 18 42-59 56-73 (104)
365 TIGR03853 matur_matur probable 26.0 62 0.0013 18.1 1.8 33 3-49 29-61 (77)
366 PF08309 LVIVD: LVIVD repeat; 25.8 29 0.00063 16.9 0.4 11 48-58 25-35 (42)
367 COG2161 StbD Antitoxin of toxi 25.8 93 0.002 17.3 2.5 37 33-69 13-49 (86)
368 PLN02771 carbamoyl-phosphate s 25.7 1.5E+02 0.0032 21.6 4.1 26 45-70 281-307 (415)
369 COG0031 CysK Cysteine synthase 25.5 45 0.00098 23.2 1.4 48 2-61 104-155 (300)
370 cd08059 MPN_prok_mb Mpr1p, Pad 25.2 1.3E+02 0.0029 16.6 5.8 33 30-63 40-72 (101)
371 TIGR02407 ectoine_ectB diamino 25.2 1.3E+02 0.0028 21.2 3.7 37 35-71 178-221 (412)
372 COG0549 ArcC Carbamate kinase 24.9 69 0.0015 22.5 2.2 21 51-71 124-144 (312)
373 PRK11611 enhanced serine sensi 23.7 97 0.0021 20.9 2.7 22 50-71 92-113 (246)
374 PRK06932 glycerate dehydrogena 23.6 1.5E+02 0.0032 20.4 3.6 56 2-69 166-222 (314)
375 KOG3710|consensus 23.5 51 0.0011 22.6 1.3 18 45-62 142-159 (280)
376 PF02826 2-Hacid_dh_C: D-isome 23.4 1.4E+02 0.0031 18.4 3.3 23 46-68 92-115 (178)
377 PF10421 OAS1_C: 2'-5'-oligoad 23.2 48 0.001 21.6 1.1 17 50-66 139-155 (190)
378 PRK12389 glutamate-1-semialdeh 22.6 2E+02 0.0043 20.4 4.2 38 34-71 186-230 (428)
379 PRK09189 uroporphyrinogen-III 22.3 94 0.002 20.0 2.4 14 3-16 20-33 (240)
380 PF11409 SARA: Smad anchor for 22.2 57 0.0012 15.8 1.0 13 52-64 4-16 (39)
381 TIGR00715 precor6x_red precorr 22.1 2.6E+02 0.0055 18.8 4.5 37 35-71 213-251 (256)
382 PRK12454 carbamate kinase-like 21.7 85 0.0018 22.0 2.2 21 51-71 125-145 (313)
383 PF13507 GATase_5: CobB/CobQ-l 21.6 1.1E+02 0.0023 20.7 2.6 49 5-63 150-208 (259)
384 KOG4132|consensus 21.5 1E+02 0.0022 21.0 2.5 39 3-54 24-64 (260)
385 KOG0629|consensus 21.2 2.9E+02 0.0062 20.8 4.8 53 7-72 222-280 (510)
386 PF02310 B12-binding: B12 bind 21.2 1.5E+02 0.0032 16.5 2.9 35 3-54 25-60 (121)
387 PF05181 XPA_C: XPA protein C- 21.1 40 0.00087 17.5 0.4 13 47-59 29-41 (52)
388 COG4460 Uncharacterized protei 21.1 1.2E+02 0.0025 18.5 2.4 30 35-70 28-57 (130)
389 cd00318 Phosphoglycerate_kinas 20.8 2.2E+02 0.0047 20.7 4.1 34 36-69 37-73 (397)
390 TIGR00287 cas1 CRISPR-associat 20.7 1.1E+02 0.0024 20.9 2.5 34 31-64 44-77 (323)
391 PF05368 NmrA: NmrA-like famil 20.1 2.4E+02 0.0051 17.7 3.9 22 34-56 54-75 (233)
392 PF08885 GSCFA: GSCFA family; 20.1 54 0.0012 22.1 0.9 17 55-71 30-46 (251)
393 PF06342 DUF1057: Alpha/beta h 20.1 2.4E+02 0.0051 19.8 4.0 37 34-70 50-92 (297)
394 PF08237 PE-PPE: PE-PPE domain 20.1 80 0.0017 20.7 1.7 19 45-63 79-97 (225)
No 1
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.54 E-value=1e-14 Score=101.61 Aligned_cols=61 Identities=43% Similarity=0.781 Sum_probs=54.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+...|++++.+++..+. .+|.+|++.|+++++++||+|++|+||||||.+++.+++++|++
T Consensus 130 ~~~~gg~~v~v~l~~~~----------~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~ 190 (393)
T COG0436 130 VKLAGGKPVPVPLDEEE----------NGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVE 190 (393)
T ss_pred HHhcCCEEEEEeCCcCc----------cCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHH
Confidence 35789999999986531 18999999999999999999999999999999999999999864
No 2
>KOG0257|consensus
Probab=99.51 E-value=2.2e-14 Score=100.47 Aligned_cols=66 Identities=61% Similarity=0.981 Sum_probs=56.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+++.|+.+++|++.... |. ....+|.+|.+.++.+++++||+|++|+||||||.++++++|++|++
T Consensus 134 ~~maG~tpv~v~~~~~~----g~-~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~ 199 (420)
T KOG0257|consen 134 VVMAGGTPVFVPLKPKE----GN-VSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAE 199 (420)
T ss_pred HhhcCCcceeecccccc----cc-ccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 46789999999998421 22 33458999999999999999999999999999999999999999874
No 3
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.45 E-value=1.4e-13 Score=95.64 Aligned_cols=61 Identities=41% Similarity=0.642 Sum_probs=52.4
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.+..|.+++..|+..++ +.|.+|+++|++++. .++|++++||||||||++++.++|++|++
T Consensus 124 i~~n~R~~i~~pL~~~~----------~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~e 185 (388)
T COG1168 124 IKLNGRKVIENPLVEDD----------GRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAE 185 (388)
T ss_pred HhhcCcEEEeccccccC----------CcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHH
Confidence 35678999999998643 389999999999985 45799999999999999999999998863
No 4
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.44 E-value=1.4e-13 Score=94.62 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=52.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+|++.++ +|.+|++++++.+.+++|++++||||||||.+++.+++++|++
T Consensus 134 ~~~~g~~~~~vp~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~ 193 (396)
T PRK09147 134 ALLAGAEPYFLNCDPAN-----------NFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFA 193 (396)
T ss_pred HHhcCCEEEEeccCccc-----------cCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHH
Confidence 35679999999997654 7899999998888778999999999999999999999998863
No 5
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.41 E-value=3.4e-13 Score=96.10 Aligned_cols=59 Identities=34% Similarity=0.574 Sum_probs=52.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ +|.+|++++++++.+++|+|+++|||||||.+++.+++++|+
T Consensus 249 ~~~~g~~~v~~~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~ 307 (517)
T PRK13355 249 VNLAGGTAVHYRCDEQS-----------EWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIV 307 (517)
T ss_pred HHHCCCEEEEeecCccc-----------CCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 35679999999987754 799999999999988999999999999999999998888875
No 6
>PLN02368 alanine transaminase
Probab=99.40 E-value=4.2e-13 Score=93.79 Aligned_cols=60 Identities=22% Similarity=0.427 Sum_probs=52.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++.++ +|.+|++.+++++++ ++|++++||||||||.+++.+++++|++
T Consensus 172 ~~~~g~~~v~v~~~~~~-----------~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~ 237 (407)
T PLN02368 172 ISLLGGTLVPYYLEESE-----------NWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILK 237 (407)
T ss_pred HHHcCCEEEEEeccccc-----------CCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHH
Confidence 35679999999997654 799999999998863 6899999999999999999999998863
No 7
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.39 E-value=6.1e-13 Score=91.68 Aligned_cols=59 Identities=25% Similarity=0.492 Sum_probs=52.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ .|.+|++++++++.+++|+|++||||||||.+++.+++++|+
T Consensus 134 ~~~~G~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~ 192 (399)
T PRK07681 134 IQMAGATSYYMPLKKEN-----------DFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVI 192 (399)
T ss_pred HHhcCCEEEEEecCCCC-----------CCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHH
Confidence 35689999999997654 788999999998877899999999999999999999988876
No 8
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.38 E-value=8.9e-13 Score=90.36 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=52.0
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ .|.+|++++++.+.+++|+|++||||||||.+++.+++++|+
T Consensus 133 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~ 191 (388)
T PRK07366 133 VYLAGGQIYPMPLRAEN-----------DFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAV 191 (388)
T ss_pred HHhcCCEEEEEECCCcc-----------CCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHH
Confidence 45689999999997654 688999999888877899999999999999999999999876
No 9
>PRK08068 transaminase; Reviewed
Probab=99.38 E-value=8.8e-13 Score=90.53 Aligned_cols=59 Identities=27% Similarity=0.367 Sum_probs=52.0
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+. +|.+|++++++.+..++++|++||||||||.+++.+++++|+
T Consensus 135 ~~~~g~~~~~i~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~ 193 (389)
T PRK08068 135 VALARAQFETMPLIAEN-----------NFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETV 193 (389)
T ss_pred HHhcCCEEEEeeccccc-----------CCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHH
Confidence 35689999999997543 688999999998877899999999999999999999998875
No 10
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.37 E-value=8.2e-13 Score=90.77 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=51.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ +|.+|++++++++.+++|+|+++|||||||.+++.+++++|+
T Consensus 134 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~ 191 (393)
T TIGR03538 134 LLAGAEPYFLNCTAEN-----------GFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLI 191 (393)
T ss_pred HhcCCeEEEeeccccC-----------CCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHH
Confidence 4579999999997653 689999999988877899999999999999999999988876
No 11
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.36 E-value=1.2e-12 Score=91.24 Aligned_cols=59 Identities=31% Similarity=0.497 Sum_probs=52.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ .|.+|++++++++..++|+|+++|||||||.+++.+++++|+
T Consensus 147 ~~~~g~~v~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~ 205 (410)
T PRK06290 147 TKYYGGEVYNLPLLEEN-----------NFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVV 205 (410)
T ss_pred HHHcCCEEEEEecCCCc-----------CCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHH
Confidence 35679999999998654 788999999998887899999999999999999999988875
No 12
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.36 E-value=9e-13 Score=93.18 Aligned_cols=60 Identities=30% Similarity=0.529 Sum_probs=51.9
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++.++ +|.+|+++|++++.+ ++|+|+++|||||||.+++.+++++|++
T Consensus 180 ~~~~g~~~v~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~ 245 (481)
T PTZ00377 180 ITLLGGKQVPYYLDEEK-----------GWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIK 245 (481)
T ss_pred HHHcCCEEEEEEecccc-----------CCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHH
Confidence 35689999999998654 799999999998864 7899999999999999999998888763
No 13
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.36 E-value=1.6e-12 Score=88.58 Aligned_cols=57 Identities=21% Similarity=0.471 Sum_probs=50.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++. +|.+|++++++++ .++++|++||||||||.+++.+++++|++
T Consensus 116 ~~~~G~~~~~v~~~~-------------~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~ 172 (351)
T PRK01688 116 AETIGVEIRTVPTLD-------------NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLE 172 (351)
T ss_pred HHHcCCEEEEeecCC-------------CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 456899999999864 6889999999887 58999999999999999999999998863
No 14
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.35 E-value=1.4e-12 Score=89.16 Aligned_cols=59 Identities=27% Similarity=0.488 Sum_probs=51.5
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ +|.+|++++++++.+++|+|+++|||||||.+++.+++++|+
T Consensus 132 ~~~~G~~v~~v~~~~~~-----------g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~ 190 (383)
T TIGR03540 132 TLFAGGEPYEMPLKEEN-----------GFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELV 190 (383)
T ss_pred HHhcCCEEEEEecCccc-----------CCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHH
Confidence 35679999999997653 688899999998888899999999999999999998888875
No 15
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.35 E-value=1.5e-12 Score=89.54 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=51.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...|++++.++++.++ +|.+|++++++.+.+++|+|+++|||||||.+++.+++++|+
T Consensus 139 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~ 196 (394)
T PRK05942 139 LIAGAQIYPIILKPEN-----------DWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIV 196 (394)
T ss_pred HHcCCEEEEeecCCcc-----------CCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHH
Confidence 4578999999997643 788999999999888999999999999999999998888875
No 16
>PRK07324 transaminase; Validated
Probab=99.34 E-value=2.1e-12 Score=88.61 Aligned_cols=59 Identities=32% Similarity=0.446 Sum_probs=51.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ +|.+|++++++.+.+++|+|++++||||||.+++.+++++|+
T Consensus 121 ~~~~g~~v~~v~~~~~~-----------~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~ 179 (373)
T PRK07324 121 PESLGAEVDYWQLKEEN-----------GWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIV 179 (373)
T ss_pred HHHcCCEEEEEeccccc-----------CCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 35689999999998654 788999999999888999999999999999999988877765
No 17
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.33 E-value=2.9e-12 Score=88.94 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=51.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.+++..++ +|.+|+++|++++.+++++++++|||||||.+++.+++++|+
T Consensus 139 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~ 196 (409)
T PLN00143 139 IFHHLEIRHFDLLPEK-----------GWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIA 196 (409)
T ss_pred HHcCCEEEEEeccCCC-----------CCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHH
Confidence 4578999999986443 788999999998888899999999999999999999998886
No 18
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.33 E-value=1.9e-12 Score=87.87 Aligned_cols=59 Identities=31% Similarity=0.466 Sum_probs=51.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ +|.+|++++++++.+++|++++++||||||.+++.+++++|+
T Consensus 104 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~ 162 (350)
T TIGR03537 104 ALFAGGEPTAVKLKKED-----------GFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETI 162 (350)
T ss_pred HHhcCCEEEEcccCccc-----------CCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHH
Confidence 45689999999997543 788999999999888899999999999999999988888775
No 19
>PLN02187 rooty/superroot1
Probab=99.33 E-value=2.8e-12 Score=90.65 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=52.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+++.+++ +|.+|+++|++++.+++++++++|||||||.+++.+++++|++
T Consensus 172 ~~~~g~~~~~~~l~~~~-----------~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~ 231 (462)
T PLN02187 172 AAYSGLEVRKFDLLPEK-----------EWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAE 231 (462)
T ss_pred HHHcCCEEEEEeCcccc-----------CCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 35679999999986543 7999999999999888999999999999999999999988863
No 20
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.33 E-value=3.3e-12 Score=87.41 Aligned_cols=58 Identities=31% Similarity=0.565 Sum_probs=50.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.+. +|.+|++++++.+.+++|+|+++|||||||.+++.+++++|+
T Consensus 135 ~~~g~~~~~v~~~~~~-----------g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~ 192 (385)
T PRK09276 135 IFAGGEPYFMPLKEEN-----------GFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVV 192 (385)
T ss_pred HHcCCEEEEEecCCCC-----------CCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 5679999999987543 688999999988888899999999999999999998888876
No 21
>PLN02231 alanine transaminase
Probab=99.33 E-value=1.9e-12 Score=93.24 Aligned_cols=59 Identities=22% Similarity=0.447 Sum_probs=51.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.+++++++ +|.+|+++|++++.. ++|+|+++|||||||.+++.+++++|++
T Consensus 234 ~~~g~~~v~~~l~~~~-----------~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~ 298 (534)
T PLN02231 234 ALHGGTLVPYYLDEAT-----------GWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVE 298 (534)
T ss_pred HHcCCEEEEEecCccc-----------CCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 5678999999998654 799999999998754 6899999999999999999999998863
No 22
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.32 E-value=3.3e-12 Score=87.54 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=50.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++.+ +|.+|++++++++. .++|+|++||||||||.+++.++++++++
T Consensus 133 ~~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~ 195 (374)
T PRK02610 133 AQTLGIPVVRVGRDPE------------TFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRS 195 (374)
T ss_pred HHHcCCEEEEecCCcc------------cCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence 4668999999998642 68899999998875 47999999999999999999999998763
No 23
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.31 E-value=3.5e-12 Score=88.40 Aligned_cols=62 Identities=29% Similarity=0.455 Sum_probs=51.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.... ..+|.+|+++|++++.+++|+|+++|||||||.+++.+++++|+
T Consensus 143 ~~~~g~~v~~v~~~~~~~--------~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~ 204 (405)
T PRK06207 143 VEFFEGEMVPVQLDYLSA--------DKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIA 204 (405)
T ss_pred HHHcCCEEEEEeccccCc--------ccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHH
Confidence 356789999999863210 01688999999999888899999999999999999999988876
No 24
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.31 E-value=4.6e-12 Score=87.61 Aligned_cols=57 Identities=33% Similarity=0.661 Sum_probs=51.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+++. .|.+|++.+.+.+..++++|++||||||||..++.++++++++
T Consensus 116 a~~~g~~~~~v~~~--------------~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 116 AQLAGAEVVKVPLK--------------EFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE 172 (356)
T ss_pred HHhcCCeEEEeccc--------------ccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 45689999999987 4778999999999888999999999999999999999999874
No 25
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.30 E-value=5.2e-12 Score=86.78 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=49.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++ ++.+|++++++++.++++++++||||||||.+++.+++.+|++
T Consensus 122 ~~~~g~~v~~v~~~--------------~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~ 178 (366)
T PRK01533 122 AIIEGCEVKEVALN--------------NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIE 178 (366)
T ss_pred HHHcCCEEEEeecC--------------CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence 35678999999985 3458999999998888999999999999999999999998863
No 26
>KOG0259|consensus
Probab=99.30 E-value=5.4e-12 Score=88.32 Aligned_cols=60 Identities=27% Similarity=0.418 Sum_probs=55.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|.+++++++-++. +|.+|++.++.+++++|.++++.||+||+|.+|+.+.|++|++
T Consensus 167 a~~~~lEVR~ydlLPe~-----------~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae 226 (447)
T KOG0259|consen 167 AIYSGLEVRYYDLLPEK-----------DWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAE 226 (447)
T ss_pred hhhcCceeEeecccCcc-----------cceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHH
Confidence 45678999999998876 9999999999999999999999999999999999999999874
No 27
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.29 E-value=4.6e-12 Score=85.94 Aligned_cols=58 Identities=31% Similarity=0.542 Sum_probs=51.1
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+++++ +|.+|++++++++. .++|+|+++|||||||.+++.+++.++++
T Consensus 122 ~~~~g~~~~~i~~~~-------------~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~ 180 (356)
T PRK04870 122 AKLAGLEFVGVPLTA-------------DFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIE 180 (356)
T ss_pred HHHcCCEEEEecCCC-------------CCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 356899999999874 67899999999985 58999999999999999999999999863
No 28
>PRK07337 aminotransferase; Validated
Probab=99.29 E-value=5.8e-12 Score=86.38 Aligned_cols=58 Identities=33% Similarity=0.622 Sum_probs=51.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ +|.+|++++++.+.+++++|++++||||||.+++.+++++|+
T Consensus 132 ~~~g~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~ 189 (388)
T PRK07337 132 AAAEGRPVLVPSGPAE-----------RFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIV 189 (388)
T ss_pred HHcCCEEEEeecCCcc-----------CCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 4578999999987643 788999999999988999999999999999999999988876
No 29
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.29 E-value=7.2e-12 Score=90.42 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=47.0
Q ss_pred CCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 6 g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+++++.++++.++ +|++|.+++++++++++|+|+++|||||||.+++.+++++|+
T Consensus 213 ~~~~v~v~~~~~~-----------~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~ 267 (527)
T PRK09275 213 DLEVVHINADEEN-----------EWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIA 267 (527)
T ss_pred CeEEEEeecCccc-----------CCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHH
Confidence 4556666655443 799999999999989999999999999999999999998886
No 30
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.28 E-value=7e-12 Score=86.06 Aligned_cols=58 Identities=45% Similarity=0.756 Sum_probs=50.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.+++..++ +|.+|++++++++.+++|+|++++||||||.+++.+++++|+
T Consensus 131 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~ 188 (384)
T PRK06348 131 EMVGGKPIILETYEED-----------GFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIA 188 (384)
T ss_pred HHcCCEEEEecCCcCc-----------CCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 4568889988875433 788999999999888899999999999999999999988876
No 31
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.28 E-value=7.5e-12 Score=86.76 Aligned_cols=59 Identities=29% Similarity=0.441 Sum_probs=51.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+. +|.+|++++++++.+++++|+++|||||||.+++.+++++|+
T Consensus 145 ~~~~g~~~~~i~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~ 203 (412)
T PTZ00433 145 CKAYGIEMRFYNCRPEK-----------DWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDII 203 (412)
T ss_pred HHHcCCEEEEEecCccc-----------cCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHH
Confidence 35679999999987643 788999999998888899999999999999999999998875
No 32
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.28 E-value=8e-12 Score=88.49 Aligned_cols=57 Identities=26% Similarity=0.510 Sum_probs=49.4
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..|++++.++++.++ +|.++++++++++.. ++|+|++||||||||.+++.+++++|+
T Consensus 155 ~~g~~~v~v~~~~~~-----------~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll 217 (468)
T PLN02450 155 RTGVEIVPIHCSSSN-----------GFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLV 217 (468)
T ss_pred cCCcEEEEEecCCcc-----------CCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHH
Confidence 478999999987543 788999999887743 789999999999999999999999886
No 33
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.28 E-value=9.6e-12 Score=87.11 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=51.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...|++++.+++.++. +|.+|++++++++++++++++++|||||||.+++.+++++|+
T Consensus 159 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~ 216 (430)
T PLN00145 159 VFSGLEVRHFDLLPER-----------GWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIA 216 (430)
T ss_pred HHcCCEEEEeeCCccc-----------CCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 4568899999986654 799999999999988999999999999999999999888875
No 34
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.27 E-value=8.5e-12 Score=88.06 Aligned_cols=57 Identities=28% Similarity=0.528 Sum_probs=49.4
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..|++++.|+++.++ +|.++++++++++.. ++|+|+++|||||||.+++.+++++|+
T Consensus 164 ~~g~~vv~v~~~~~~-----------~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~ 226 (447)
T PLN02607 164 RTGVKIVPIHCDSSN-----------NFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDIL 226 (447)
T ss_pred cCCcEEEEEeCCCCC-----------CCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHH
Confidence 468899999987654 788999999988753 789999999999999999999999876
No 35
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.27 E-value=9.9e-12 Score=84.99 Aligned_cols=57 Identities=18% Similarity=0.382 Sum_probs=50.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. +|.+|++++++++++++|+++++|||||||.+++.+++.+|++
T Consensus 130 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~ 186 (371)
T PRK05166 130 TMMGARVERVTVTP-------------DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLD 186 (371)
T ss_pred HHcCCeEEEeecCC-------------CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 56799999999875 5678999999998888999999999999999999999988863
No 36
>PLN00175 aminotransferase family protein; Provisional
Probab=99.27 E-value=7.8e-12 Score=87.04 Aligned_cols=58 Identities=48% Similarity=0.767 Sum_probs=51.4
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+ +|.+|++.|++.+.+++|+|+++|||||||.+++.+++++|+
T Consensus 156 ~~~~g~~~~~v~~~~~------------~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~ 213 (413)
T PLN00175 156 LSMAGAKIKTVTLRPP------------DFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIA 213 (413)
T ss_pred HHHcCCEEEEEECCcc------------cCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHH
Confidence 3567999999999753 578999999999988899999999999999999999988876
No 37
>PRK08960 hypothetical protein; Provisional
Probab=99.27 E-value=9.8e-12 Score=85.31 Aligned_cols=58 Identities=26% Similarity=0.544 Sum_probs=51.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ +|.+|++.+++++.++++++++++||||||.+++.+++++|+
T Consensus 134 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~ 191 (387)
T PRK08960 134 RLVEGAAQLVPVGPDS-----------RYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALS 191 (387)
T ss_pred HhcCCeEEEEecCccc-----------CCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 4578899999987654 788999999999988899999999999999999999998875
No 38
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.26 E-value=7.1e-12 Score=86.71 Aligned_cols=60 Identities=22% Similarity=0.177 Sum_probs=49.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+++..++ +|.+|++.+++++. +++++++++|||||||.+++.+++++|++
T Consensus 141 ~~~~G~~~~~v~l~~~~-----------~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~ 203 (404)
T PTZ00376 141 FKSAGLNVKEYRYYDPK-----------TKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIAD 203 (404)
T ss_pred HHHcCCceeeccccCcc-----------cCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 46789999999985432 68899999998874 34678888999999999999999998863
No 39
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.26 E-value=1.4e-11 Score=84.87 Aligned_cols=57 Identities=28% Similarity=0.535 Sum_probs=50.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. +|.+|++++++++ .+++|+|++||||||||.+++.+++.+|++
T Consensus 145 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~ 202 (380)
T PLN03026 145 AVNGAEVIKVPRTP-------------DFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE 202 (380)
T ss_pred HHcCCEEEEeecCC-------------CCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence 46799999999853 6789999999988 678999999999999999999999999874
No 40
>PRK06855 aminotransferase; Validated
Probab=99.26 E-value=1.5e-11 Score=86.10 Aligned_cols=57 Identities=32% Similarity=0.464 Sum_probs=49.2
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..|++++.++++.++ +|.+|+++|++++. +++++++++|||||||.+++.+++++|+
T Consensus 139 ~~g~~~v~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~ 197 (433)
T PRK06855 139 HAGYPPVTYRLDPEN-----------NWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIV 197 (433)
T ss_pred hcCCeEEEEeccccc-----------CCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHH
Confidence 347888999987643 78899999999885 4679999999999999999999999886
No 41
>PRK12414 putative aminotransferase; Provisional
Probab=99.26 E-value=9.9e-12 Score=85.41 Aligned_cols=57 Identities=37% Similarity=0.684 Sum_probs=50.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.+ +|.+|++.+++++.+++|+|+++|||||||.+++.+++++|+
T Consensus 132 ~~~g~~~~~v~~~~~------------~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~ 188 (384)
T PRK12414 132 RLQGATPVAIKLSPE------------DFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLA 188 (384)
T ss_pred HHcCCEEEEEecCcc------------ccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHH
Confidence 457899999998753 688999999999988899999999999999999999988876
No 42
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.25 E-value=1.7e-11 Score=88.46 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=49.1
Q ss_pred CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.|++++.++++..+. ++..+|.+|.++++++.++++|+|+++|||||||.+++.+++++|+
T Consensus 206 ~g~~vv~i~~~~~~~------~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~ 266 (521)
T TIGR03801 206 YDFEVVRIKADEMTE------DGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIV 266 (521)
T ss_pred CCcEEEEeecccccc------cccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 477888888765320 0011399999999998888999999999999999999999998875
No 43
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.24 E-value=1.8e-11 Score=83.23 Aligned_cols=57 Identities=32% Similarity=0.563 Sum_probs=50.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. +|.+|++++++++++ ++|+|+++|||||||.+++.+++.++++
T Consensus 118 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~ 175 (351)
T PRK14807 118 KIAGAVEIPVKLKE-------------DYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIE 175 (351)
T ss_pred HHcCCeEEEeecCC-------------CCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 56799999999864 677899999999864 8999999999999999999999998863
No 44
>PRK08912 hypothetical protein; Provisional
Probab=99.24 E-value=1.4e-11 Score=84.41 Aligned_cols=58 Identities=48% Similarity=0.792 Sum_probs=50.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+ +|.+|++++++.+.+++|+++++|||||||.+++.+++++|+
T Consensus 128 ~~~~g~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~ 185 (387)
T PRK08912 128 IRRAGGVPRLVRLEPP------------HWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLA 185 (387)
T ss_pred HHHcCCEEEEEecCcc------------cCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHH
Confidence 3567999999998642 678999999999988899999999999999999999988775
No 45
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.24 E-value=1.8e-11 Score=83.24 Aligned_cols=56 Identities=27% Similarity=0.484 Sum_probs=47.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+|++. +|.+|++.+++ + +++|+|++||||||||.+++.+++.+|++
T Consensus 119 ~~~~g~~v~~v~~~~-------------~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~ 174 (354)
T PRK04635 119 AETFNVGVKALPLTA-------------DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIE 174 (354)
T ss_pred HHHcCCEEEEEecCC-------------CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHH
Confidence 356899999999864 57788888873 3 58999999999999999999999999873
No 46
>PRK07682 hypothetical protein; Validated
Probab=99.24 E-value=1.6e-11 Score=83.87 Aligned_cols=58 Identities=41% Similarity=0.744 Sum_probs=50.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ +|.+|++++++++.++++++++++||||||.+++.+++++|+
T Consensus 123 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~ 180 (378)
T PRK07682 123 TLAGGVPVPVATTLEN-----------EFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIA 180 (378)
T ss_pred HHcCCEEEEeecCCcc-----------CCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHH
Confidence 4578899999886543 688999999999988899999999999999999999888875
No 47
>PRK09105 putative aminotransferase; Provisional
Probab=99.23 E-value=1.5e-11 Score=84.51 Aligned_cols=56 Identities=27% Similarity=0.430 Sum_probs=48.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++. +|.+|++++++. .++++++++||||||||.+++.+++++++
T Consensus 136 ~~~~g~~~~~v~~~~-------------~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~ 191 (370)
T PRK09105 136 ADAQGAPVAKVPLRA-------------DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLL 191 (370)
T ss_pred HHHcCCeEEEecCCC-------------CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 356799999999864 677899999877 46789999999999999999999999886
No 48
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.23 E-value=2.1e-11 Score=83.96 Aligned_cols=56 Identities=30% Similarity=0.656 Sum_probs=49.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++. +|.+|++++++++++++|+|+++|||||||.+++.+++++|+
T Consensus 131 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~ 186 (389)
T PRK05957 131 TMAGCQPILVPTDD-------------NYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVN 186 (389)
T ss_pred HhcCCEEEEeecCC-------------CCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 56799999998863 678999999999988899999999999999999988877765
No 49
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.23 E-value=1.7e-11 Score=84.45 Aligned_cols=59 Identities=34% Similarity=0.512 Sum_probs=51.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ +|.+|++.+++.+..++++++++|||||||.+++.+++++|+
T Consensus 136 ~~~~g~~v~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~ 194 (401)
T TIGR01264 136 AESMGIEVKLYNLLPDK-----------SWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEIL 194 (401)
T ss_pred HHHcCCEEEEeecCCcc-----------CCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 35678999999986543 688999999998887899999999999999999999888876
No 50
>PRK09265 aminotransferase AlaT; Validated
Probab=99.22 E-value=2.1e-11 Score=84.14 Aligned_cols=58 Identities=33% Similarity=0.574 Sum_probs=49.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ +|.+|++++++++.+++++|+++|||||||.+++.+++++|+
T Consensus 137 ~~~g~~~v~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~ 194 (404)
T PRK09265 137 SLSGGKPVHYLCDEEA-----------GWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIV 194 (404)
T ss_pred HHcCCEEEEEeccccc-----------CCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHH
Confidence 4568888888876543 688999999999988899999999999999999977777765
No 51
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.21 E-value=3.3e-11 Score=81.99 Aligned_cols=59 Identities=27% Similarity=0.511 Sum_probs=51.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ .+|.+|++++++.+.+++++|++++||||||.+++.+++++|+
T Consensus 126 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~ 184 (382)
T PRK06108 126 KILGARVVCVPLDFGG----------GGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAIL 184 (382)
T ss_pred HHCCCEEEEeeCCCCC----------CCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence 5679999999997532 1688999999999888899999999999999999999888876
No 52
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.21 E-value=3.1e-11 Score=82.91 Aligned_cols=58 Identities=38% Similarity=0.690 Sum_probs=50.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ +|.+|++++++.+.+++++++++|||||||.+++.+++.+|+
T Consensus 135 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~ 192 (391)
T PRK08361 135 KIAEAKPIRIPLREEN-----------EFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIA 192 (391)
T ss_pred HHcCCEEEEEecCCcc-----------CCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 4578999999997654 788999999999988899999999999999999977777664
No 53
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.21 E-value=2.5e-11 Score=82.66 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=46.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ +|.+| +++.+.+.+++|+|+++|||||||.+++.+++++|+
T Consensus 111 ~~~~g~~~~~v~~~~~~-----------~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~ 168 (356)
T PRK08056 111 LQQVGCEIRRYSLREAD-----------GWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIA 168 (356)
T ss_pred HHHcCCeEEEEeccccc-----------CCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHH
Confidence 35679999999987643 67777 445566667899999999999999999988877765
No 54
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.21 E-value=3.4e-11 Score=86.02 Aligned_cols=58 Identities=26% Similarity=0.511 Sum_probs=48.6
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh------cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF------SSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~------~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++++.++ +|.++++++++++ ..++|+|++||||||||.+++.+++++|++
T Consensus 163 ~~G~~vv~v~~~~~~-----------~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~ 226 (496)
T PLN02376 163 RTGVEIIPVPCSSSD-----------NFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVR 226 (496)
T ss_pred hCCCEEEEEeCCCCc-----------cCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHH
Confidence 479999999997643 7889999987653 247899999999999999999999998863
No 55
>PLN02656 tyrosine transaminase
Probab=99.21 E-value=3.2e-11 Score=83.64 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=51.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.+++..+. +|.+|++++++++.+++++++++|||||||.+++.+++++|+
T Consensus 138 ~~~g~~~~~i~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~ 195 (409)
T PLN02656 138 AFRHLEVRYVDLLPEK-----------GWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIA 195 (409)
T ss_pred HHcCCEEEEEeCCCcC-----------CCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHH
Confidence 4579999999986543 688999999999988899999999999999999999988876
No 56
>PRK07550 hypothetical protein; Provisional
Probab=99.20 E-value=3.2e-11 Score=82.68 Aligned_cols=59 Identities=34% Similarity=0.551 Sum_probs=51.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+. +|.+|+++++++++.++++|++++||||||.+++.+++++|+
T Consensus 131 ~~~~g~~~~~v~~~~~~-----------~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~ 189 (386)
T PRK07550 131 LDMLGIRPVYLPCDEGP-----------GLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELY 189 (386)
T ss_pred HHhcCCEEEEEecCCCc-----------CCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHH
Confidence 35679999999997543 688899999999988899999999999999999988887775
No 57
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.20 E-value=3e-11 Score=83.26 Aligned_cols=58 Identities=33% Similarity=0.645 Sum_probs=51.5
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+ +|.+|++++++++.+++++|++++||||||.+++.+++.+|+
T Consensus 137 ~~~~g~~v~~v~~~~~------------~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~ 194 (394)
T PRK06836 137 VDNHGGKLVVVPTDTD------------TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALA 194 (394)
T ss_pred HHHcCCEEEEEecCCc------------cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 3567999999998753 578999999999988999999999999999999999998886
No 58
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.19 E-value=3e-11 Score=83.24 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=48.5
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+++...+ +|.+|++.+++.+. +++++++++|||||||.+++.+++++|++
T Consensus 137 ~~~~g~~~v~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~ 199 (396)
T PRK09257 137 FEAAGLEVKTYPYYDAA-----------TKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAE 199 (396)
T ss_pred HHHcCCcEEEEeccccc-----------cCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 45689999999984322 67899999988864 34566777999999999999999998863
No 59
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.18 E-value=3.8e-11 Score=81.85 Aligned_cols=58 Identities=22% Similarity=0.423 Sum_probs=48.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.++ .|.+| +++.+.+..++++++++|||||||.+++.+++++|+
T Consensus 110 ~~~~g~~~~~~~~~~~~-----------~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~ 167 (354)
T PRK06358 110 LKAFDAEIEYAELTEET-----------NFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKIL 167 (354)
T ss_pred HHHcCCeeEEEeCcccc-----------CCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHH
Confidence 35678999999987543 68888 666666666799999999999999999999998886
No 60
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.18 E-value=4.8e-11 Score=81.67 Aligned_cols=59 Identities=46% Similarity=0.839 Sum_probs=51.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++.+|++++.++++.++ .|.+|++++++++.++++++++++|+||||.+++.+++++|+
T Consensus 132 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~ 190 (393)
T PRK05764 132 VKLAGGVPVFVPTGEEN-----------GFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIA 190 (393)
T ss_pred HHHcCCEEEEEecCccc-----------CCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence 35679999999987543 788999999999988899999999999999999988887775
No 61
>PLN02397 aspartate transaminase
Probab=99.18 E-value=4.1e-11 Score=83.76 Aligned_cols=60 Identities=23% Similarity=0.175 Sum_probs=49.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+++...+ +|.+|++.+++.+. ++++++++++||||||.+++.+++++|++
T Consensus 159 ~~~~g~~~~~v~l~~~~-----------~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~ 221 (423)
T PLN02397 159 FRDAGVPVRTYRYYDPK-----------TRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISD 221 (423)
T ss_pred HHHcCCeEEEeecccCc-----------CCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 45689999999984332 57899998877664 56788999999999999999999998863
No 62
>PRK09082 methionine aminotransferase; Validated
Probab=99.18 E-value=4.3e-11 Score=82.24 Aligned_cols=58 Identities=41% Similarity=0.705 Sum_probs=51.0
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+ +|.+|++++++++.+++++|++++||||||.+++.+++++|+
T Consensus 132 ~~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~ 189 (386)
T PRK09082 132 IELAGGRAVRVALQPP------------DFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALW 189 (386)
T ss_pred HHHcCCEEEEEecCcc------------cccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 3567899999998753 688999999999988899999999999999999999988875
No 63
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.18 E-value=6.4e-11 Score=80.48 Aligned_cols=58 Identities=22% Similarity=0.453 Sum_probs=48.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++.++ +|.++.+++.+.. +++|+|++||||||||.+++.+++.++++
T Consensus 124 ~~~g~~~~~~~l~~~~-----------~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~ 181 (357)
T PRK14809 124 RYHHGEVREYPVSKAD-----------DFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAE 181 (357)
T ss_pred HHcCCeEEEEecccCc-----------CCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 4568899999986543 6888888887765 36899999999999999999999998864
No 64
>PRK03321 putative aminotransferase; Provisional
Probab=99.18 E-value=4.7e-11 Score=80.77 Aligned_cols=57 Identities=33% Similarity=0.595 Sum_probs=50.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.+++++ ++.+|++.+++++++++++++++|||||||.+++.+++.++++
T Consensus 116 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~ 172 (352)
T PRK03321 116 QVAGATPVQVPLTP-------------DHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLD 172 (352)
T ss_pred HHcCCEEEEccCCC-------------CCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence 45789999999874 4567899999999888999999999999999999999999874
No 65
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.17 E-value=3.9e-11 Score=83.52 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=46.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEe-CCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILN-TPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++.+ .+|+++++++++.++|+++++ |||||||.+++.+++++|+
T Consensus 182 ~~~~g~~~~~v~~~~~--------------g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~ 238 (431)
T PRK15481 182 LRYAGFSASPVSVDAE--------------GMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALR 238 (431)
T ss_pred HHHcCCeEEeeccCCC--------------CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHH
Confidence 4568999999998642 268899999887789998887 9999999999999666654
No 66
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.17 E-value=7.4e-11 Score=80.01 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=48.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++ ++.+|++++++.+.+++++++++|||||||.+++.+++.++++
T Consensus 123 ~~~g~~~~~~~~~--------------~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~ 178 (359)
T PRK03158 123 IIEGAEVREVPLK--------------DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLE 178 (359)
T ss_pred HHcCCeEEEEecC--------------CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 4568899999986 3447899999988888999999999999999999999988863
No 67
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.16 E-value=8.3e-11 Score=79.86 Aligned_cols=56 Identities=29% Similarity=0.579 Sum_probs=49.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++ +|.+|++++++.+++++|+|+++|||||||.+++.+++.++++
T Consensus 126 ~~~g~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~ 181 (367)
T PRK02731 126 QAVGAKPVEVPAK--------------DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLA 181 (367)
T ss_pred HHcCCeEEEeccc--------------CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 4578999988873 5678999999999888999999999999999999999999873
No 68
>PRK07777 aminotransferase; Validated
Probab=99.16 E-value=6.6e-11 Score=81.14 Aligned_cols=59 Identities=39% Similarity=0.636 Sum_probs=50.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.+++++++ .+|.+|++++++.+.+++++|+++|||||||.+++.+++++|+
T Consensus 127 ~~~g~~~~~~~~~~~~----------~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~ 185 (387)
T PRK07777 127 AMAGAHRVPVPLVPDG----------RGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIA 185 (387)
T ss_pred HHCCCEEEEeecCCcc----------CCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHH
Confidence 4578899999987642 1688999999999888899999999999999999988887775
No 69
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.15 E-value=6.2e-11 Score=81.92 Aligned_cols=60 Identities=30% Similarity=0.485 Sum_probs=47.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHH----HHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAE----LESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++.++ +|.+|++. +++++. .+++++++||||||||.+++.+++++|++
T Consensus 136 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~ 202 (403)
T PRK08636 136 FILAGGNVHKMPLEYNE-----------DFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVA 202 (403)
T ss_pred HHhcCCEEEEEeccccc-----------cCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHH
Confidence 35679999999986433 67888764 455553 47899999999999999999999998863
No 70
>PRK05839 hypothetical protein; Provisional
Probab=99.15 E-value=5.7e-11 Score=81.51 Aligned_cols=57 Identities=33% Similarity=0.525 Sum_probs=46.1
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++.++ +|.+|+++.+ + +++|+|++||||||||.+++.+++++|++
T Consensus 126 ~~~~g~~v~~v~~~~~~-----------~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~ 182 (374)
T PRK05839 126 AIASRAKVLLMPLTKEN-----------DFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLSLEELIEWVK 182 (374)
T ss_pred HHhcCCEEEEeeccccc-----------CCcCCcchhh--h-ccccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 35679999999997654 6877765442 2 46999999999999999999999998863
No 71
>PRK08637 hypothetical protein; Provisional
Probab=99.15 E-value=1e-10 Score=80.50 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=45.7
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..|++++.+++..+ ++.+|+++++++++ +..++++++|||||||.+++.+++++|+
T Consensus 113 ~~g~~vv~v~~~~~------------~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~ 172 (388)
T PRK08637 113 RRGAEIVTYPIFDE------------DGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIV 172 (388)
T ss_pred hcCCEEEEecccCC------------CCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 46899999998432 44579999988875 4456688999999999999999999886
No 72
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.14 E-value=1e-10 Score=79.38 Aligned_cols=56 Identities=25% Similarity=0.485 Sum_probs=48.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++. +|.+|++.+++.. +++|+++++|||||||.+++.+++.+++
T Consensus 111 ~~~~g~~~~~v~~~~-------------~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~ 166 (337)
T PRK03967 111 AKLNGIPVIDVPLKE-------------DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVL 166 (337)
T ss_pred HHHcCCeEEEeecCC-------------CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 356789999999864 6778999998765 5789999999999999999999999876
No 73
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.14 E-value=7.5e-11 Score=80.42 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=47.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++.+. +|.+|++++++++. .++|+|+++|||||||.+++.+++++|++
T Consensus 130 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~ 187 (368)
T PRK03317 130 RGTHTEWVEGPRAA-------------DFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILD 187 (368)
T ss_pred HhcCCeeEEcccCC-------------CCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 45677777777643 68899999999885 47899999999999999999999999873
No 74
>PRK07683 aminotransferase A; Validated
Probab=99.14 E-value=8.7e-11 Score=80.83 Aligned_cols=57 Identities=33% Similarity=0.650 Sum_probs=50.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|+++++++++.+ +|.+|.+.+++.+.++++++++++||||||.+++.+++++|+
T Consensus 131 ~~~g~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~ 187 (387)
T PRK07683 131 RLCGAKPVFIDTRST------------GFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIA 187 (387)
T ss_pred HHcCCEEEEeecCcc------------cCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 467999999998753 688899999999888899999999999999999998888775
No 75
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.13 E-value=9.8e-11 Score=80.66 Aligned_cols=58 Identities=33% Similarity=0.559 Sum_probs=48.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++.+.. .|.+|++.+++++.. ++++|++++||||||.+++.+++++|+
T Consensus 132 ~~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~ 192 (391)
T PRK07309 132 VNLVGAEIVEIDTTEN------------DFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALA 192 (391)
T ss_pred HHHcCCEEEEEecCCc------------CCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHH
Confidence 3567999999997642 678999999988853 689999999999999999988888876
No 76
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.13 E-value=1.4e-10 Score=78.54 Aligned_cols=57 Identities=33% Similarity=0.641 Sum_probs=50.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++.+. +|.+|++++++.+.++++++++++|+||||.+++.+++.++++
T Consensus 129 ~~~g~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~ 185 (361)
T PRK00950 129 KAHGAKPVYAKREE-------------DFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILE 185 (361)
T ss_pred HHcCCEEEEeecCC-------------CCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence 56789999988543 6789999999998878999999999999999999999999874
No 77
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.13 E-value=1.5e-10 Score=79.35 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=49.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.+++..++ ++|.+|++++.+.. .+++++|++||||||||.+++.+++.++++
T Consensus 119 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~ 179 (364)
T PRK04781 119 RLQNAPLVEVPLVDGA----------DGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQ 179 (364)
T ss_pred HHcCCEEEEEecCCCc----------cCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHH
Confidence 5679999999985321 16778998886554 678999999999999999999999998863
No 78
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.13 E-value=1.2e-10 Score=80.56 Aligned_cols=58 Identities=31% Similarity=0.442 Sum_probs=50.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.+++..++ +|.+|++.+++++.++++++++++||||||.+++.+++++|+
T Consensus 138 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 195 (403)
T TIGR01265 138 AFSGLEVRLYDLLPEK-----------DWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIA 195 (403)
T ss_pred HHcCCEEEEecCCccc-----------CCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHH
Confidence 4578999999886543 688999999999888899999999999999999988877765
No 79
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.12 E-value=1.4e-10 Score=78.15 Aligned_cols=57 Identities=26% Similarity=0.583 Sum_probs=50.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++.+.+++++|++++|+||||.+++.+++.++++
T Consensus 113 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~ 169 (346)
T TIGR01141 113 KIHGAEVVKVPLDE-------------DGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLE 169 (346)
T ss_pred HHcCCeEEEeccCC-------------CCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 46799999999875 5678999999988888999999999999999999999999874
No 80
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.11 E-value=1.4e-10 Score=79.05 Aligned_cols=59 Identities=27% Similarity=0.426 Sum_probs=46.9
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCc---eeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADF---KLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++.++ .+ ..+++.+++.. ++++++++||||||||.+++.++|.++++
T Consensus 114 ~~~~g~~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~~l~~ 175 (360)
T PRK07392 114 LRAFGATVKELPLPLDQ-----------PSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAILPLLE 175 (360)
T ss_pred HHHcCCeEEEEeccccc-----------CCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence 35689999999997643 33 45677776654 46899999999999999999999998863
No 81
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.11 E-value=1e-10 Score=79.05 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=42.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.+|++. +.++.+.+++ .++|+|++||||||||.+++.+++.+|+
T Consensus 96 ~~~~G~~v~~vp~~~--------------~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~ 148 (332)
T PRK06425 96 AFTHGIRISALPFNL--------------INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTIS 148 (332)
T ss_pred HHHcCCeEEEEeCCc--------------ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHH
Confidence 467899999999864 2245555543 3789999999999999999999998886
No 82
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.11 E-value=1.4e-10 Score=80.11 Aligned_cols=58 Identities=40% Similarity=0.745 Sum_probs=49.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...+++++.++++.++ +|.+|++++++++.+++++++++||+||||.+++.+++.+++
T Consensus 135 ~~~~~~~~~v~~~~~~-----------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~ 192 (402)
T PRK06107 135 LANDGTPVIVACPEEQ-----------GFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALA 192 (402)
T ss_pred HHcCCEEEEecCCccc-----------CCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 3456778888876433 688999999999888899999999999999999999988876
No 83
>PRK08363 alanine aminotransferase; Validated
Probab=99.11 E-value=1.4e-10 Score=79.90 Aligned_cols=57 Identities=26% Similarity=0.563 Sum_probs=47.2
Q ss_pred ccCCCeEEEe-eCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYI-PLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.+ +++.+ +|.+|++.+++.+.+++++|+++|||||||.+++.+++++|+
T Consensus 135 ~~~g~~~v~~~~~~~~------------~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~ 192 (398)
T PRK08363 135 KFYGGVPVEYRTIEEE------------GWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEIL 192 (398)
T ss_pred HHcCCEEEEecccccc------------CCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHH
Confidence 4568888887 44332 678899999999988899999999999999999988877765
No 84
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.10 E-value=9.8e-11 Score=78.97 Aligned_cols=59 Identities=37% Similarity=0.669 Sum_probs=49.9
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.+++..++ +|.+|+++|++.+++ ++++|++++||||||.+++.+++++|+
T Consensus 110 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~ 174 (363)
T PF00155_consen 110 ARLLGAEVIPVPLDSEN-----------DFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELA 174 (363)
T ss_dssp HHHTTSEEEEEEEEETT-----------TTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHH
T ss_pred ccccCceeeeccccccc-----------cccccccccccccccccccccccceeeecccccccccccccccccchh
Confidence 45679999999987554 899999999998876 678999999999999999999999985
No 85
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.09 E-value=1.7e-10 Score=78.90 Aligned_cols=59 Identities=32% Similarity=0.577 Sum_probs=50.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.+. ++|.+|++++++.+.+++++++++||+||||.+++.+++++|+
T Consensus 125 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~ 183 (380)
T PRK06225 125 SRFGAEVIEVPIYSEE----------CNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFA 183 (380)
T ss_pred HHhCceEEeecccccc----------CCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 5678999999975321 1688999999999988899999999999999999988888775
No 86
>PRK09148 aminotransferase; Validated
Probab=99.09 E-value=2.3e-10 Score=79.27 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=46.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ .|..+++++.+...+++++++++|||||||.+++.+++++|+
T Consensus 134 ~~~g~~v~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~ 191 (405)
T PRK09148 134 IMAGGVIRSVPAEPDE-----------EFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVV 191 (405)
T ss_pred HhcCCEEEEEeCCCCC-----------CCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 5679999999997643 455566655555556889999999999999999999888775
No 87
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.06 E-value=3.4e-10 Score=76.43 Aligned_cols=53 Identities=30% Similarity=0.375 Sum_probs=45.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. +|.+|++++++ .+++++++|||||||.+++.+++.+|++
T Consensus 119 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~ 171 (353)
T PRK05387 119 GLYGIPYEEIPLDD-------------DFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILA 171 (353)
T ss_pred HHcCCEEEEeecCC-------------CCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 56789999999864 67789998864 4688999999999999999999999873
No 88
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.05 E-value=4.2e-10 Score=77.10 Aligned_cols=58 Identities=34% Similarity=0.571 Sum_probs=48.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCcee-CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKL-DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.+. +|.+ +++++++++.+++++|+++|||||||.+++.+++++|+
T Consensus 130 ~~~g~~~~~v~~~~~~-----------g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 188 (397)
T PRK07568 130 TSAGVKIVPVTTKIEE-----------GFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLA 188 (397)
T ss_pred HHcCCEEEEeecCccc-----------CCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHH
Confidence 5678999999986432 4553 68999999988899999999999999999988887775
No 89
>PLN02672 methionine S-methyltransferase
Probab=99.04 E-value=3.5e-10 Score=86.94 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=51.4
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCC-CccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPH-NPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~-NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+|++.++ +|.+|++.+++++.. +.++|++|||| ||||.+++.+++++|++
T Consensus 795 a~~~Ga~vv~Vpl~~e~-----------gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Lle 856 (1082)
T PLN02672 795 AKFLKANFRRIPTKSSD-----------GFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILS 856 (1082)
T ss_pred HHHcCCEEEEEeccccc-----------CCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHH
Confidence 45689999999997543 799999999999865 45689999997 99999999999998863
No 90
>PRK07908 hypothetical protein; Provisional
Probab=99.02 E-value=5.2e-10 Score=75.83 Aligned_cols=53 Identities=28% Similarity=0.468 Sum_probs=44.4
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++. +|.+|++.+ .+++|+++++|||||||.+++.++|.+++
T Consensus 113 ~~~~G~~i~~v~~~~-------------~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~ 165 (349)
T PRK07908 113 LRAAGIPVHRVVLDP-------------PFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALR 165 (349)
T ss_pred HHHcCCEEEeeccCc-------------ccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHH
Confidence 356799999999875 467888754 45789999999999999999999999886
No 91
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.01 E-value=7.3e-10 Score=76.20 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=51.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++++++++++|++++|+||||.+++.++|.++++
T Consensus 131 ~~~g~~v~~v~~~~-------------~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~ 187 (401)
T PRK10874 131 QQTGAKVVKLPLGA-------------DRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAH 187 (401)
T ss_pred HHhCCEEEEEecCC-------------CCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHH
Confidence 56799999999864 5678999999999999999999999999999999999998873
No 92
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.00 E-value=9.5e-10 Score=75.58 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=51.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus 128 ~~~g~~v~~v~~~~-------------~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~ 184 (398)
T TIGR03392 128 QQTGAKVVKLPIGA-------------DLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAH 184 (398)
T ss_pred HHcCcEEEEEecCC-------------CCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHH
Confidence 56799999999875 5668999999999889999999999999999999999988874
No 93
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.00 E-value=1.1e-09 Score=75.03 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=46.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|++++.+|++. + .+|++++.+.+ ..++++|++||||||||.+++.+++.++++
T Consensus 126 ~~~g~~~~~vp~~~-------------~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 182 (369)
T PRK08153 126 AGFGGRLVTVPYRD-------------D-REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIE 182 (369)
T ss_pred HHcCCeEEEeeCCC-------------C-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 45788999999854 2 36888887766 467899999999999999999999998863
No 94
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=98.99 E-value=3.2e-10 Score=78.50 Aligned_cols=47 Identities=28% Similarity=0.560 Sum_probs=37.5
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 9 PIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 9 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++.++++.++ +|.++++ .+++|+|++||||||||.+++.+++++|++
T Consensus 157 ~~~v~~~~~~-----------~~~~d~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~ 203 (409)
T PRK07590 157 IVYLPCTAEN-----------NFVPELP------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVD 203 (409)
T ss_pred eeEeeccccc-----------CCcccCc------ccCceEEEEeCCCCCcCCcCCHHHHHHHHH
Confidence 8888887543 5655542 257899999999999999999999998863
No 95
>KOG0256|consensus
Probab=98.95 E-value=1.5e-09 Score=76.72 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=50.3
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc------CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS------SRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~------~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+.|+++++|.+..++ +|+++.+++|++.. .++|.|+++||+||.|.+++++++..++
T Consensus 190 rTgveivpv~c~Ss~-----------~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll 252 (471)
T KOG0256|consen 190 RTGVEIVPVHCSSSN-----------GFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLL 252 (471)
T ss_pred ccCceEEEEEeecCC-----------CccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHH
Confidence 468999999998875 89999999988774 2689999999999999999999998876
No 96
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.95 E-value=1.8e-09 Score=73.84 Aligned_cols=57 Identities=21% Similarity=0.396 Sum_probs=50.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++.+++++.++++++++++|+||||.+++.++|.++++
T Consensus 111 ~~~G~~v~~v~~~~-------------~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~ 167 (382)
T TIGR03403 111 ESLGVEVTYLPINE-------------QGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICK 167 (382)
T ss_pred HHCCCEEEEEecCC-------------CCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHH
Confidence 45789999999875 5668899999999888999999999999999999999998863
No 97
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.94 E-value=1.5e-09 Score=73.70 Aligned_cols=52 Identities=31% Similarity=0.627 Sum_probs=41.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.++++. +|.++... + .++++++++|||||||.+++.+++++|+
T Consensus 113 ~~~~g~~~~~v~~~~-------------~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~ 164 (335)
T PRK14808 113 AKAVGAKFLEVPLTK-------------DLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_pred HHHcCCeEEEecCCC-------------cCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence 467899999999875 44444332 2 3579999999999999999999999886
No 98
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.93 E-value=1.7e-09 Score=74.64 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=50.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus 135 ~~~g~~v~~v~~~~-------------~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~ 191 (406)
T PRK09295 135 ARVGAELRVIPLNP-------------DGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAH 191 (406)
T ss_pred HHcCcEEEEEecCC-------------CCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHH
Confidence 45789999999875 5668999999999889999999999999999999999988863
No 99
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=98.92 E-value=3.2e-09 Score=72.70 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=51.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++.+ ++.++++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus 126 ~~~g~~~~~~~~~~~------------~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~ 183 (397)
T TIGR01976 126 ERAGAKVKWARVDEA------------TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVH 183 (397)
T ss_pred HhcCCEEEEEecccc------------CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHH
Confidence 457999999998753 4668999999999888999999999999999999999998874
No 100
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.92 E-value=9.9e-10 Score=75.93 Aligned_cols=48 Identities=31% Similarity=0.590 Sum_probs=37.8
Q ss_pred eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+++.++++.++ +|.+++.. ..++|+|++||||||||.+++.+++++|+
T Consensus 152 ~~~~v~~~~~~-----------~~~~~~~~-----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~ 199 (402)
T TIGR03542 152 KITYLPCTKEN-----------NFIPDLPE-----EPKIDIIYLCSPNNPTGTVLTKEQLKELV 199 (402)
T ss_pred eEEEeecchhh-----------CCCCCccc-----cCCceEEEEeCCCCCCCccCCHHHHHHHH
Confidence 88888886543 56665422 24789999999999999999999988876
No 101
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.91 E-value=2.8e-09 Score=72.30 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=49.4
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++.+. ++.+|++++++++.++++++++++|+||||.+++.++|.++++
T Consensus 109 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~ 164 (376)
T TIGR01977 109 QIGVEITIVKCDN-------------EGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQ 164 (376)
T ss_pred HcCcEEEEEecCC-------------CCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHH
Confidence 4588999998864 5668999999999889999999999999999999999998874
No 102
>PRK02948 cysteine desulfurase; Provisional
Probab=98.90 E-value=2.7e-09 Score=72.91 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=50.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus 109 ~~~g~~v~~v~~~~-------------~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~ 165 (381)
T PRK02948 109 ESQGYTVTEIPVDK-------------SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLK 165 (381)
T ss_pred HhCCCEEEEEeeCC-------------CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHH
Confidence 45688999999874 5678999999999888999999999999999999999998863
No 103
>PRK08175 aminotransferase; Validated
Probab=98.90 E-value=2.6e-09 Score=73.60 Aligned_cols=55 Identities=31% Similarity=0.449 Sum_probs=43.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++.++ .| .+++++++. +++++|++++||||||.+++.+++++|+
T Consensus 133 ~~~g~~~~~v~~~~~~-----------~~---~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 190 (395)
T PRK08175 133 VIAGAQVRSVPLVEGV-----------DF---FNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVV 190 (395)
T ss_pred HHcCCeEEEEecccCC-----------Cc---HHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 4578999999987643 33 566776664 4789999999999999999998888775
No 104
>KOG0633|consensus
Probab=98.90 E-value=4.8e-09 Score=71.36 Aligned_cols=57 Identities=25% Similarity=0.487 Sum_probs=51.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...+++++.+|+.+ +|+++.|++.+.+. +.+|++|+++|+||||..+..+.|.++++
T Consensus 129 ~iNd~eVvkvpl~p-------------dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe 187 (375)
T KOG0633|consen 129 AINDAEVVKVPLNP-------------DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILE 187 (375)
T ss_pred ecCCceEEEecCCC-------------CccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHh
Confidence 45789999999998 89999999988874 46899999999999999999999999874
No 105
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.88 E-value=3.4e-09 Score=75.38 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=48.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCce--eCHHHHHhhhc----CCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFK--LDPAELESKFS----SRTKLIILNTPHNPLG-KVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~~~----~~~~~i~l~~P~NPtG-~~~~~~~l~~l~ 71 (72)
+..|++++.++++...+ ....+.|. +|+++|++.++ +++++|++++|+|||| .+++.+++++|+
T Consensus 134 ~~~G~~~v~v~~~~~~~-----~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~ 204 (460)
T PRK13238 134 ELNGATAVDLVIDEALD-----TGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVY 204 (460)
T ss_pred HHcCCEEEEEecccccc-----ccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHH
Confidence 46799999999875200 00011454 99999999997 3799999999999998 999998777664
No 106
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=98.86 E-value=2.9e-09 Score=73.66 Aligned_cols=41 Identities=34% Similarity=0.556 Sum_probs=35.4
Q ss_pred CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.|.+|+++|+ +..+++++++||||||||.+++.+++++|++
T Consensus 166 ~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~ 206 (416)
T PRK09440 166 KYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDA 206 (416)
T ss_pred ccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHH
Confidence 3678999887 4567899999999999999999999988863
No 107
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.86 E-value=6.6e-09 Score=70.52 Aligned_cols=57 Identities=33% Similarity=0.455 Sum_probs=50.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++.+.+++++|++++|+||||.+++.++|.++|+
T Consensus 110 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~ 166 (373)
T cd06453 110 ERTGAKLKVVPVDD-------------DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAH 166 (373)
T ss_pred hhcCcEEEEeecCC-------------CCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHH
Confidence 45789999999874 5678999999999889999999999999999999999998874
No 108
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=98.86 E-value=4.9e-09 Score=72.81 Aligned_cols=57 Identities=28% Similarity=0.398 Sum_probs=49.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++.+.+++++|++++|+||||.+++.++|.++++
T Consensus 144 ~~~g~~v~~v~~~~-------------~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~ 200 (424)
T PLN02855 144 QKTGAVLKFVGLTP-------------DEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAH 200 (424)
T ss_pred HHcCCEEEEEecCC-------------CCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHH
Confidence 45789999999875 3447899999999889999999999999999999999988863
No 109
>PRK08354 putative aminotransferase; Provisional
Probab=98.85 E-value=4e-09 Score=70.79 Aligned_cols=38 Identities=32% Similarity=0.586 Sum_probs=33.0
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+|++.+++.+. +++++++||||||||.+++.+++++|+
T Consensus 106 ~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~ 143 (311)
T PRK08354 106 NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLL 143 (311)
T ss_pred CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHH
Confidence 46788888776 578999999999999999999999886
No 110
>PRK06234 methionine gamma-lyase; Provisional
Probab=98.83 E-value=8.3e-09 Score=71.94 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=45.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++.. |++++++++.+++|+|++++|+||||.+.+.++|.++++
T Consensus 125 ~~~G~~v~~vd~~------------------d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~ 176 (400)
T PRK06234 125 TRYGVEVTFVDTS------------------NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAH 176 (400)
T ss_pred hhCCeEEEEECCC------------------CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHH
Confidence 4578888887653 578899999889999999999999999999999999874
No 111
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=98.83 E-value=7.4e-09 Score=69.89 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=50.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++.+++ ++++|++++|+||+|.+++.++|.++++
T Consensus 94 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~ 151 (356)
T cd06451 94 ERYGADVDVVEKPW-------------GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAK 151 (356)
T ss_pred HHhCCCeEEeecCC-------------CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHH
Confidence 45789999999875 567899999999976 8999999999999999999999998874
No 112
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.82 E-value=9.2e-09 Score=70.01 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=50.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++..+ +|.+|++++++++. +++++|++++|+||||.+.+.+++.++++
T Consensus 100 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~ 166 (361)
T cd06452 100 AERAGLNVREVPNTGHP-----------EYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCH 166 (361)
T ss_pred HHhcCCEEEEEecCCCC-----------CcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHH
Confidence 35679999999987643 57899999998875 36899999999999999999999988763
No 113
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.80 E-value=9.2e-09 Score=71.52 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=45.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++++++. |++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus 114 ~~~G~~v~~v~~~------------------d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~ 165 (390)
T PRK08064 114 SRFGIEHTFVDMT------------------NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAK 165 (390)
T ss_pred HHcCCEEEEECCC------------------CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHH
Confidence 3468888888763 578899999889999999999999999999999998874
No 114
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.80 E-value=9.8e-09 Score=70.50 Aligned_cols=57 Identities=37% Similarity=0.534 Sum_probs=50.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.++++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus 130 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~ 186 (403)
T TIGR01979 130 ERTGATLKFIPLDD-------------DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAH 186 (403)
T ss_pred HhcCcEEEEEecCC-------------CCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHH
Confidence 45789999999874 5668999999999989999999999999999999999988863
No 115
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.80 E-value=1.1e-08 Score=69.19 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=49.6
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++++. ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus 110 ~~G~~v~~v~~~~-------------~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~ 165 (353)
T TIGR03235 110 RNGFTVTYLPVDE-------------SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLE 165 (353)
T ss_pred hcCCEEEEEccCC-------------CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHH
Confidence 4688999999874 5668999999999888999999999999999999999998873
No 116
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.80 E-value=1.3e-08 Score=70.50 Aligned_cols=52 Identities=29% Similarity=0.393 Sum_probs=44.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+++++++.. |++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus 110 ~~~G~~v~~v~~~------------------d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~ 161 (377)
T PRK07671 110 NRFGIEHTFVDTS------------------NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAK 161 (377)
T ss_pred hcCCeEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 3467888877632 688999999889999999999999999999999999874
No 117
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=98.77 E-value=7.9e-09 Score=69.94 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=36.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++++ .+++.+ .+++++++||||||||.+++.+++.+|+
T Consensus 104 ~~~g~~~~~v~~~---------------------~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~ 150 (330)
T PRK05664 104 RRAGHQVRELDEA---------------------EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWH 150 (330)
T ss_pred HHcCCeEEEechh---------------------hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHH
Confidence 4567777777653 233334 3688999999999999999999999886
No 118
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.76 E-value=2e-08 Score=71.14 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=48.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC----ccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR----TKLIILNTPHNPL-GKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~~i~l~~P~NPt-G~~~~~~~l~~l~ 71 (72)
...|++++.+++++..+-+ ......|.+|+++|+++++++ +++|++++|+||+ |.+++.+.+++++
T Consensus 109 ~~~Ga~pv~v~i~~~~~~~---~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~ 179 (431)
T cd00617 109 EANGAVPVDLVIDEAHDAQ---ELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVR 179 (431)
T ss_pred HhCCCEeEEEecccccccc---cccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHH
Confidence 5679999999997542000 000013459999999999765 7899999999998 9999999876654
No 119
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.75 E-value=1.8e-08 Score=68.79 Aligned_cols=56 Identities=30% Similarity=0.465 Sum_probs=49.5
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++++. ++.+|++++++.+.++++++++++++||||.+++.++|.++++
T Consensus 108 ~~G~~v~~v~~~~-------------~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~ 163 (379)
T TIGR03402 108 KQGYKVTYLPVDE-------------EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAK 163 (379)
T ss_pred HcCCEEEEEccCC-------------CCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHH
Confidence 3689999998864 5568999999999889999999999999999999999998873
No 120
>PRK14012 cysteine desulfurase; Provisional
Probab=98.74 E-value=2.2e-08 Score=69.20 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=50.0
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++++. ++.+|++++++++.+++++|++++++||||.+++.++|.++|+
T Consensus 116 ~~g~~~~~v~~~~-------------~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~ 171 (404)
T PRK14012 116 REGFEVTYLDPQS-------------NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICR 171 (404)
T ss_pred hCCCEEEEEccCC-------------CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHH
Confidence 3589999998874 5678999999999989999999999999999999999998873
No 121
>PLN02721 threonine aldolase
Probab=98.74 E-value=2.1e-08 Score=67.28 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=45.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCC-CCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTP-HNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P-~NPtG~~~~~~~l~~l~ 71 (72)
...|++++.++.+. +|.+|++++++++. +++++|+++++ +||+|.+++.+.+++|+
T Consensus 101 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~ 164 (353)
T PLN02721 101 TLGGVHPRTVKNNE-------------DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVG 164 (353)
T ss_pred hhcCceeEecCCCc-------------CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHH
Confidence 45688899988764 66789999999987 58999999875 78999999987666554
No 122
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.72 E-value=3e-08 Score=68.94 Aligned_cols=52 Identities=29% Similarity=0.383 Sum_probs=44.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+++++++++ |++++++++.+++|+|++++|+||||.+++.++|.++|+
T Consensus 122 ~~~G~~v~~vd~~------------------d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~ 173 (390)
T PRK08133 122 ARFGIETTFVDLT------------------DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAH 173 (390)
T ss_pred HHcCcEEEEECCC------------------CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHH
Confidence 3468888888764 578889999889999999999999999999999999874
No 123
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=98.72 E-value=1.4e-08 Score=69.16 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.++++++||||||||.+++.+++.+++
T Consensus 130 ~~~~v~l~nPnNPTG~~~s~~~l~~l~ 156 (339)
T PRK06959 130 ALTHLIVVNPNNPTAERLPAARLLRWH 156 (339)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 457999999999999999999999875
No 124
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=98.71 E-value=3.5e-08 Score=67.69 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=50.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-------RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++...+. +|.+|+++|++++.+ ++++|++++|+||||...+.++|.++++
T Consensus 107 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~ 173 (370)
T TIGR02539 107 AERAGLNVKEVPHTGHP-----------EYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCR 173 (370)
T ss_pred HHHcCCEEEEEecCCcc-----------cCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHH
Confidence 35678999999976433 688999999998852 6789999999999999999999998873
No 125
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.71 E-value=3.3e-08 Score=68.37 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=49.8
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++++. ++.+|++++++++.++++++++++++||||.+.+.++|.++++
T Consensus 114 ~~g~~v~~v~~~~-------------~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~ 169 (402)
T TIGR02006 114 REGFEVTYLPPKS-------------NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICR 169 (402)
T ss_pred hcCCEEEEEccCC-------------CCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHH
Confidence 4589999999875 5668999999999888999999999999999999999998873
No 126
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.70 E-value=3.4e-08 Score=69.18 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=35.5
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus 134 d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~ 172 (405)
T PRK08776 134 DPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAH 172 (405)
T ss_pred CHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHH
Confidence 678899988889999999999999999999999998873
No 127
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.70 E-value=4.1e-08 Score=68.60 Aligned_cols=39 Identities=44% Similarity=0.617 Sum_probs=35.9
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++.+++|+|++++|+||||.+++.++|.++++
T Consensus 127 d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~ 165 (388)
T PRK08861 127 DAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAK 165 (388)
T ss_pred CHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 688899999889999999999999999999999998874
No 128
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=98.69 E-value=3.8e-08 Score=68.76 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=36.2
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus 138 d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~ 176 (398)
T PRK08249 138 DHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAK 176 (398)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHH
Confidence 688999999889999999999999999999999998874
No 129
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=98.69 E-value=3.7e-08 Score=68.73 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=36.9
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+|++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus 138 ~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~ 177 (398)
T PRK07504 138 LDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIAN 177 (398)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHH
Confidence 4789999999889999999999999999999999999873
No 130
>PRK07049 methionine gamma-lyase; Validated
Probab=98.68 E-value=4.9e-08 Score=68.82 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=31.9
Q ss_pred CHHHHHhhhc-----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFS-----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~-----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.+++++. +++|+|++++|+||||.+++.+++.+|++
T Consensus 158 d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~ 201 (427)
T PRK07049 158 SEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVAD 201 (427)
T ss_pred CHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHH
Confidence 4556655542 57999999999999999999999998873
No 131
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.68 E-value=3.6e-08 Score=69.66 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=45.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|++++++++. |++++++++++++++|++++|+||||.+++.++|.++++
T Consensus 125 ~~~Gv~v~~vd~~------------------d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~ 176 (431)
T PRK08248 125 PKLGITVKFVDPS------------------DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAH 176 (431)
T ss_pred HhCCEEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 4578888888753 578899999889999999999999999999999998873
No 132
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.68 E-value=4.1e-08 Score=68.63 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=44.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++++++. |++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus 126 ~~~G~~v~~vd~~------------------d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~ 177 (403)
T PRK07503 126 GEFGVTVRHVDLT------------------DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAH 177 (403)
T ss_pred hhCCEEEEEeCCC------------------CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHH
Confidence 3467777777653 578899999889999999999999999999999999874
No 133
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.68 E-value=4.8e-08 Score=68.05 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=44.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+|+++++++++ |++++++++.+++|+|++++|+||+|.+++.++|.++++
T Consensus 120 ~~~G~~~~~vd~~------------------d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~ 171 (391)
T TIGR01328 120 TKFGIQVDFINMA------------------IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAH 171 (391)
T ss_pred hcCCeEEEEECCC------------------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 3467778777754 578899999889999999999999999999999998873
No 134
>PRK06460 hypothetical protein; Provisional
Probab=98.67 E-value=4.7e-08 Score=67.73 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=40.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++..++.+. .+.+++.+.+++|+|++++|+||||.+++.++|.++++
T Consensus 106 ~~~G~~v~~~~~~~------------------~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~ 157 (376)
T PRK06460 106 KNWGVNVDASNPGS------------------DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCK 157 (376)
T ss_pred HhhCcEEEEECCCC------------------HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHH
Confidence 45677777776542 23345555678999999999999999999999998873
No 135
>KOG0258|consensus
Probab=98.66 E-value=2.2e-08 Score=70.73 Aligned_cols=57 Identities=32% Similarity=0.547 Sum_probs=48.6
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-----CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-----RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.+|+..+..-++++. .|.+|.++|++.+.+ ++|++++-||.||||.+.+++.+++|+
T Consensus 180 l~~~~~v~YyLdEe~-----------~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~ 241 (475)
T KOG0258|consen 180 LLGGTQVPYYLDEES-----------NWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGII 241 (475)
T ss_pred HhCCcccceeecccc-----------CCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHH
Confidence 456777777778765 999999999988743 579999999999999999999999886
No 136
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.65 E-value=5.1e-08 Score=67.80 Aligned_cols=39 Identities=31% Similarity=0.548 Sum_probs=36.0
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus 125 d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~ 163 (382)
T TIGR02080 125 DEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAK 163 (382)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHH
Confidence 688999999889999999999999999999999998873
No 137
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.65 E-value=5.1e-08 Score=67.58 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=45.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++++++. |++++++++++++|+|++++|+||+|.+++.++|.++|+
T Consensus 107 ~~~G~~v~~vd~~------------------d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~ 158 (378)
T TIGR01329 107 PRSGVVVVHVDTT------------------DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAH 158 (378)
T ss_pred HHcCcEEEEeCCC------------------CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHH
Confidence 3468888888753 578899999889999999999999999999999998873
No 138
>PLN02651 cysteine desulfurase
Probab=98.65 E-value=6.5e-08 Score=66.02 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=49.7
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++++. ++.+|+++++++++++++++++++++||||.+++.++|.++++
T Consensus 110 ~~g~~v~~v~~~~-------------~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~ 165 (364)
T PLN02651 110 QEGFEVTYLPVKS-------------DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCR 165 (364)
T ss_pred hcCCEEEEEccCC-------------CCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHH
Confidence 4688999998864 5668999999999989999999999999999999999998874
No 139
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=98.64 E-value=6.2e-08 Score=67.82 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=45.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++.. |++++++++++++|+|++++|+||+|.+++.++|.++++
T Consensus 131 ~~~G~~v~~vd~~------------------d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~ 182 (403)
T PRK07810 131 PRWGVETVFVDGE------------------DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAH 182 (403)
T ss_pred HHcCcEEEEECCC------------------CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHH
Confidence 4568888888642 688999999889999999999999999999999998874
No 140
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.62 E-value=8.7e-08 Score=67.01 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=48.2
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|++++.++++. + .+|++++++++++++++|++++| ||||.+.+.++|.++++
T Consensus 177 ~~G~~~~~v~~~~-------------~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~ 230 (447)
T PRK00451 177 GQGIEVVEVPYED-------------G-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAH 230 (447)
T ss_pred hCCcEEEEecCCC-------------C-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHH
Confidence 4689999999864 5 68999999999889999999999 99999999999998874
No 141
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.61 E-value=9.7e-08 Score=66.39 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=36.2
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++.+++|+|++++|+||||.+.+.++|.++++
T Consensus 135 d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~ 173 (388)
T PRK07811 135 DLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAH 173 (388)
T ss_pred CHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHH
Confidence 689999999889999999999999999999999998874
No 142
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.61 E-value=7e-08 Score=67.06 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=36.0
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus 123 d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~ 161 (380)
T PRK06176 123 DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAK 161 (380)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHH
Confidence 688899999889999999999999999999999998874
No 143
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.60 E-value=6.7e-08 Score=66.58 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=43.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+++++++.. |++++++++.+++|+|++++|+||+|...+.++|.++++
T Consensus 112 ~~~G~~v~~vd~~------------------d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~ 163 (366)
T PRK08247 112 KKWNVRFVYVNTA------------------SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAK 163 (366)
T ss_pred hccCceEEEECCC------------------CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 3467787777652 678899999889999999999999999999999888763
No 144
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.59 E-value=8.6e-08 Score=66.78 Aligned_cols=39 Identities=26% Similarity=0.527 Sum_probs=36.0
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++.+++|+|++++|+||||.+++.+++.++++
T Consensus 126 d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~ 164 (386)
T PRK08045 126 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR 164 (386)
T ss_pred CHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHH
Confidence 688999999889999999999999999999999998873
No 145
>PLN02242 methionine gamma-lyase
Probab=98.59 E-value=1.2e-07 Score=66.80 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=35.5
Q ss_pred CHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++++ ++|+|++++|+||||.+++.++|.++++
T Consensus 151 d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~ 190 (418)
T PLN02242 151 DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAH 190 (418)
T ss_pred CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHH
Confidence 68899999987 5999999999999999999999998874
No 146
>PRK06767 methionine gamma-lyase; Provisional
Probab=98.58 E-value=1.1e-07 Score=65.97 Aligned_cols=39 Identities=36% Similarity=0.522 Sum_probs=36.0
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++.+++|+|++++|+||||.+++.++|.++++
T Consensus 135 d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~ 173 (386)
T PRK06767 135 TEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAK 173 (386)
T ss_pred CHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHH
Confidence 678899999889999999999999999999999999874
No 147
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.57 E-value=7.1e-08 Score=66.77 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=38.5
Q ss_pred ceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 31 FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 31 ~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|..|+++++++++++||+|++++|+||||.+.+.+++.++++
T Consensus 122 ~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~ 163 (364)
T PRK07269 122 YANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAH 163 (364)
T ss_pred ecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHH
Confidence 556899999999989999999999999999999999998874
No 148
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.57 E-value=1.3e-07 Score=66.70 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=36.1
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++.+++|+|++++|+||||.+++.+++.++|+
T Consensus 132 d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~ 170 (425)
T PRK06084 132 DIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAH 170 (425)
T ss_pred CHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHH
Confidence 688999999889999999999999999999999998874
No 149
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=98.57 E-value=1.6e-07 Score=63.90 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=48.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|+++++++++. +++++++++|+||||..++.++|.++++
T Consensus 100 ~~~g~~~~~i~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~ 158 (368)
T PRK13479 100 EYLGIAHVVLDTGE-------------DEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAK 158 (368)
T ss_pred HHcCCcEEEEECCC-------------CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHH
Confidence 56789999999864 456899999998853 4678999999999999999999998873
No 150
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.56 E-value=8.7e-08 Score=64.26 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=48.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.+++++ ++.+|+++|++++.+ +++++++++|+||||.+.+.++|.++|+
T Consensus 113 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~ 175 (345)
T cd06450 113 AYLDVKVRLVPVDE-------------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAE 175 (345)
T ss_pred HHHhcCeEEeeeCC-------------CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHH
Confidence 34588999999875 457899999999876 7889999999999999999999998874
No 151
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.55 E-value=1.4e-07 Score=66.16 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=44.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++.. |++++++++.+++++|++++|+||+|.+++.++|.++++
T Consensus 118 ~~~G~~v~~v~~~------------------d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~ 169 (418)
T TIGR01326 118 KRLGIEVRFVDPD------------------DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAH 169 (418)
T ss_pred HHcCcEEEEECCC------------------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 3568888887742 678999999889999999999999999999999998874
No 152
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=98.55 E-value=1.4e-07 Score=65.32 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=43.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|++++++++. |++++++++.+++|+|++++|+||+|.+.+.+++.++|+
T Consensus 115 ~~~g~~v~~v~~~------------------d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~ 166 (380)
T TIGR01325 115 PRFGIEVSFVDPT------------------DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAH 166 (380)
T ss_pred HHhCCEEEEECCC------------------CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHH
Confidence 3467777777653 578888888888999999999999999999999998874
No 153
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.55 E-value=1.7e-07 Score=66.48 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=46.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+|+++.+++.. +|+++++++++++||+|++.+|+||++.+.+.++|.++|+
T Consensus 122 ~~~Gi~v~~vd~~-----------------~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~ 174 (432)
T PRK06702 122 RKLGIDVTFFNPN-----------------LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAK 174 (432)
T ss_pred HHCCCEEEEECCC-----------------CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHH
Confidence 4578888888653 3789999999999999999999999999999999999874
No 154
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.55 E-value=1.6e-07 Score=66.22 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=43.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++.. |++++++++++++|+|++++|+||+|.+++.++|.++++
T Consensus 124 ~~~G~~v~~vd~~------------------d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~ 175 (427)
T PRK05994 124 KSFGWQVRWADAD------------------DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAH 175 (427)
T ss_pred HhcCcEEEEECCC------------------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 3457777776642 578899999889999999999999999999999998873
No 155
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.54 E-value=1.5e-07 Score=62.83 Aligned_cols=53 Identities=26% Similarity=0.440 Sum_probs=42.9
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-------RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..|++++.++.+ .+.+|++++++++.+ ++++|+++||+|| |.+++.+++++|+
T Consensus 93 ~~g~~~~~v~~~--------------~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~ 152 (338)
T cd06502 93 LSGVKLLPVPGE--------------NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAIS 152 (338)
T ss_pred HcCceEEeecCC--------------CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHH
Confidence 468888888864 456899999999864 7899999999998 7777888877765
No 156
>PRK05939 hypothetical protein; Provisional
Probab=98.54 E-value=1.4e-07 Score=66.06 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=44.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++.. |++++++++.+++|+|++++|+||||.+.+.++|.++|+
T Consensus 107 ~~~G~~v~~v~~~------------------d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~ 158 (397)
T PRK05939 107 RGLGVEVTMVDAT------------------DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCR 158 (397)
T ss_pred HhcCCEEEEECCC------------------CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHH
Confidence 3467888887753 578999999999999999999999999999999988873
No 157
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.50 E-value=2e-07 Score=63.09 Aligned_cols=37 Identities=27% Similarity=0.533 Sum_probs=31.6
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
|++.+++.+ .+++++++++||||||.+++.+++.+|+
T Consensus 115 d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~ 151 (330)
T TIGR01140 115 DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALA 151 (330)
T ss_pred CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 467788777 4688999999999999999999988775
No 158
>PLN02409 serine--glyoxylate aminotransaminase
Probab=98.50 E-value=2.1e-07 Score=64.69 Aligned_cols=56 Identities=11% Similarity=-0.039 Sum_probs=47.9
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC----CccEEEEeCCCCccccCCCHHHHHHH
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS----RTKLIILNTPHNPLGKVFTREELEVI 70 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~l~~P~NPtG~~~~~~~l~~l 70 (72)
++..|++++.++.+. +..++++++++++++ ++|+|++++++||||.+++.+++.++
T Consensus 103 ~~~~g~~v~~v~~~~-------------~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l 162 (401)
T PLN02409 103 MQRLNFDVDVVESPW-------------GQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKL 162 (401)
T ss_pred HHHcCCceEEEECCC-------------CCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHH
Confidence 356799999999865 233689999999875 79999999999999999999999988
No 159
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.50 E-value=2.5e-07 Score=63.75 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=45.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEE-EeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLII-LNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~-l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|+++++++++ +.+|+++++++++++|++++ +++|+||+|.+.+.++|.++|+
T Consensus 121 ~~~g~~~v~v~~~---------------~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~ 176 (363)
T TIGR01437 121 RLGGGKVVEAGYA---------------NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQ 176 (363)
T ss_pred HhcCCeEEEEcCC---------------CCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHH
Confidence 3467888888753 34899999999999999766 6889999999999999998874
No 160
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.5e-07 Score=65.13 Aligned_cols=57 Identities=33% Similarity=0.405 Sum_probs=52.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.+|++. ++.++.+.+++.++++||+|.+++-+|.||.+.+.++|.++++
T Consensus 133 ~~~Ga~v~~i~~~~-------------~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~ 189 (405)
T COG0520 133 KRTGAKVRVIPLDD-------------DGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAH 189 (405)
T ss_pred HhcCcEEEEEecCC-------------CCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHH
Confidence 45699999999984 6778999999999999999999999999999999999999874
No 161
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.48 E-value=2.2e-07 Score=64.49 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=48.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|+++++++++.+ +|.+|++++++++++++|+|+ |+||+|..++.++|.++|+
T Consensus 89 ~~~G~~~v~vd~d~~------------~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~ 143 (376)
T TIGR02379 89 VLRGAKIVFVDIRPD------------TMNIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALAN 143 (376)
T ss_pred HHcCCEEEEEecCCC------------cCCCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHH
Confidence 457999999999863 688999999999988999997 7889999999999998874
No 162
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.48 E-value=3.5e-07 Score=61.87 Aligned_cols=57 Identities=28% Similarity=0.283 Sum_probs=49.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++.+. ++.+|+++|++++.+++++|++++++|+||.+.+.++|.++|+
T Consensus 122 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~ 178 (371)
T PRK13520 122 DMLGVELRRAPLDD-------------DYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIAL 178 (371)
T ss_pred HHcCceEEEecCCC-------------CCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHH
Confidence 45788999998764 5678999999999888888888999999999999999999874
No 163
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.48 E-value=3.8e-07 Score=61.85 Aligned_cols=58 Identities=29% Similarity=0.349 Sum_probs=48.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++.+. ++.+|++++++++.+++.++++.+|+||||.+.+.++|.++++
T Consensus 123 ~~~~G~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~ 180 (373)
T TIGR03812 123 AEMLGLELRYAPLDE-------------DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIAL 180 (373)
T ss_pred HHHcCCeEEEEeeCC-------------CCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHH
Confidence 356799999999864 6778999999999877766666668999999999999999874
No 164
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.47 E-value=3.6e-07 Score=64.70 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=45.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++.+ |+++++++++++||+|++.+|+||+|.+.+.++|.++++
T Consensus 125 ~~~Gi~v~~vd~~------------------d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~ 176 (433)
T PRK08134 125 RRFGIETTFVKPG------------------DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAH 176 (433)
T ss_pred hhCCeEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHH
Confidence 3478888888863 578999999999999999999999999999999999874
No 165
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=98.46 E-value=2.6e-07 Score=65.68 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=46.9
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEe-CCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILN-TPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~-~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.||++.++ +|+++|++.+.. ++|+++++ +-|||||.+|+.+..++|++
T Consensus 196 ~~~~g~~~~~vp~d~~G--------------~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~ 254 (459)
T COG1167 196 LEALGARVIPVPVDEDG--------------IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLA 254 (459)
T ss_pred HHHcCCcEEecCCCCCC--------------CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHH
Confidence 46789999999998654 899999999864 67886655 55999999999999888763
No 166
>PRK10534 L-threonine aldolase; Provisional
Probab=98.45 E-value=4.5e-07 Score=60.93 Aligned_cols=40 Identities=38% Similarity=0.497 Sum_probs=34.8
Q ss_pred CceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 30 DFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+|.+|+++|++++.+ ++++|++|||+| |.+++.+++.+|+
T Consensus 108 ~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~--G~v~~~~~l~~i~ 153 (333)
T PRK10534 108 DGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN--GKVLPREYLKQAW 153 (333)
T ss_pred CCCCCHHHHHHhhcccCcCcccceEEEEecCCC--CeecCHHHHHHHH
Confidence 788999999998865 589999998775 9999999998765
No 167
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.44 E-value=4.6e-07 Score=62.60 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=49.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++.+.+. ++.+|++++++++. +++++|++++|+||||.+.+.++|.++++
T Consensus 120 ~~~G~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~ 185 (387)
T PRK09331 120 ERAGLNVREVPKTGYP-----------EYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAH 185 (387)
T ss_pred HHcCCEEEEEeCccCc-----------CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHH
Confidence 5679999999984221 67789999999875 26899999999999999999999998874
No 168
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=98.43 E-value=5e-07 Score=62.19 Aligned_cols=51 Identities=29% Similarity=0.450 Sum_probs=43.1
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|+++.+++.+ |++++++++++++|+|++++|+||+|.+.+.++|.++++
T Consensus 102 ~~g~~~~~v~~~------------------d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~ 152 (369)
T cd00614 102 KLGIEVTFVDPD------------------DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAH 152 (369)
T ss_pred hcCeEEEEeCCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 457777777643 478899999888999999999999999999999998874
No 169
>PLN02509 cystathionine beta-lyase
Probab=98.42 E-value=3.5e-07 Score=65.45 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=43.2
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..|+++++++.. |++++++++.+++|+|++++|+||+|.+.+.++|.++++
T Consensus 194 ~~G~~v~~vd~~------------------d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk 244 (464)
T PLN02509 194 RSGVVVKRVNTT------------------NLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAH 244 (464)
T ss_pred HCCeEEEEeCCC------------------CHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 467777777532 578899999889999999999999999999999988873
No 170
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.41 E-value=7.4e-07 Score=59.58 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=47.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|+++++++...... ..-.+.+|++++++++. +++|++++++| ||+|.+++.++|.++|+
T Consensus 117 ~~~g~~~~~v~~~~~~~-------~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~ 180 (294)
T cd00615 117 VLSGAVPVYLKPERNPY-------YGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAH 180 (294)
T ss_pred HHCCCEEEEecCccCcc-------cCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHH
Confidence 45688999988764320 00013689999999985 46899999999 79999999999998874
No 171
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.40 E-value=7.6e-07 Score=58.92 Aligned_cols=59 Identities=41% Similarity=0.642 Sum_probs=45.1
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++..|+.++.+++...+ .+..+.+.++....+++++|++++|+||||.+++.+++.+|+
T Consensus 100 ~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~ 158 (350)
T cd00609 100 ARLAGAEVVPVPLDEEG-----------GFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELA 158 (350)
T ss_pred HHHCCCEEEEEeccccc-----------CCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence 35678899999987642 333333666666778899999999999999999999888543
No 172
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.39 E-value=5.9e-07 Score=64.12 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=46.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccC-CCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV-FTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~ 71 (72)
+..|++++.++++. +|.+|+++|++++.+++++|++++|+ |||.. .+.++|.+++
T Consensus 179 ~~~G~~vv~v~~~~-------------~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a 234 (481)
T PRK04366 179 AMAGFKVVEIPSNE-------------DGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIV 234 (481)
T ss_pred HHcCCEEEEeecCC-------------CCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHH
Confidence 46799999999864 67889999999998899999999998 99976 4677777765
No 173
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.39 E-value=5e-07 Score=62.44 Aligned_cols=55 Identities=22% Similarity=0.422 Sum_probs=48.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|++++.++++.+ +|.+|++++++++++++|+|+ |+||+|...+.+++.++|+
T Consensus 91 ~~~G~~~v~vd~~~~------------~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~ 145 (379)
T PRK11658 91 VLLGATPVMVDVDRD------------TLMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGE 145 (379)
T ss_pred HHcCCEEEEEecCCC------------cCCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHH
Confidence 467999999999763 678999999999988999988 7788999999999998874
No 174
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=98.37 E-value=3.1e-07 Score=62.59 Aligned_cols=28 Identities=39% Similarity=0.693 Sum_probs=25.5
Q ss_pred CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 44 SRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 44 ~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.++++|+++|||||||.+++.+++++|+
T Consensus 147 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~ 174 (364)
T PRK07865 147 QRPALIWLNSPSNPTGRVLGVDHLRKVV 174 (364)
T ss_pred ccceEEEEcCCCCCCCccCCHHHHHHHH
Confidence 5789999999999999999999988875
No 175
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=7.9e-07 Score=62.36 Aligned_cols=55 Identities=25% Similarity=0.509 Sum_probs=50.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
-..|+++++|+++++ +|.+|++.++++++++||+|+ |.+-.|...+.+.|.+|++
T Consensus 92 ~~~Ga~PVFvDid~~------------T~nid~~~ie~aIt~~tKAIi---pVhl~G~~~dm~~i~~la~ 146 (374)
T COG0399 92 LLVGAKPVFVDIDPD------------TLNIDPDLIEAAITPRTKAII---PVHLAGQPCDMDAIMALAK 146 (374)
T ss_pred HHcCCeEEEEecCCc------------ccCCCHHHHHHHcccCCeEEE---EehhccCCCCHHHHHHHHH
Confidence 357999999999985 899999999999999999999 9999999999999999974
No 176
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.37 E-value=6e-07 Score=63.04 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=34.5
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+.+++++.++||+|++++|+||||.+.+.++|.++++
T Consensus 135 ~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~ 173 (394)
T PRK09028 135 IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAH 173 (394)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 347788888889999999999999999999999988863
No 177
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=98.32 E-value=8.5e-07 Score=59.40 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=47.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|++++++.++. +++++++++++||||.+.+.++|.++++
T Consensus 94 ~~~g~~~~~i~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~ 152 (355)
T TIGR03301 94 EYLGIPHTDLNFSE-------------YEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVAR 152 (355)
T ss_pred HHcCCceEEEecCC-------------CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHH
Confidence 45788899998764 566899999998853 4567888999999999999999998873
No 178
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.32 E-value=1.4e-06 Score=61.79 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=44.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++ +. .|++++++++++++++|++.+|+||+|.+.+.++|.++++
T Consensus 130 ~~~Gi~v~~vd-d~----------------~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~ 182 (436)
T PRK07812 130 PKLGIEVSFVE-DP----------------DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAH 182 (436)
T ss_pred hcCeEEEEEEC-CC----------------CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 34677777775 22 1789999999989999999999999999999999999874
No 179
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.32 E-value=1.1e-06 Score=59.75 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=48.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|++++.++++. ++.+|++.+++++.. +++++++++++||||..++.++|.++++
T Consensus 97 a~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~ 156 (363)
T TIGR02326 97 AEYLGIPHHVVDTGE-------------VEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAH 156 (363)
T ss_pred HHHcCCceEEEeCCC-------------CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHH
Confidence 356789999999875 456799999998864 4678899999999999999999998873
No 180
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.31 E-value=1.1e-06 Score=61.28 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=42.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+++++++.. +.+.+++++.+++|+|++++|+||+|.+.+.++|.++++
T Consensus 126 ~~~Gi~v~~vd~~------------------~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~ 177 (394)
T PRK07050 126 RDFGITVRFYDPL------------------IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAAR 177 (394)
T ss_pred HhcCeEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHH
Confidence 4567888877642 236788888889999999999999999999999988763
No 181
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.31 E-value=7.7e-07 Score=62.56 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=43.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+++.+++.. +.+.++++++++||+|++++|+||++.+.+.++|.++|+
T Consensus 125 ~~~Gi~v~~vd~~------------------~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~ 176 (395)
T PRK05967 125 KRLGVEVEYYDPE------------------IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAH 176 (395)
T ss_pred HhcCeEEEEeCCC------------------CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 5678888887543 247789999889999999999999999999999988873
No 182
>PRK08114 cystathionine beta-lyase; Provisional
Probab=98.27 E-value=1.4e-06 Score=61.23 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=44.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+++.+++.. |.+.++++++++||+|++.+|+||+|.+.+.+++.++++
T Consensus 123 ~~~Gi~v~~vd~~------------------d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~ 174 (395)
T PRK08114 123 SKLGVTTTWFDPL------------------IGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVR 174 (395)
T ss_pred HhcCcEEEEECCC------------------CHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHH
Confidence 4568888887743 568899999889999999999999999999999999874
No 183
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=98.26 E-value=9.8e-07 Score=62.34 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=38.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCC--CCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTP--HNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P--~NPtG~~~~~~~l~~l~ 71 (72)
++.+|++.+.||+.+++ +|.|.+++.+. +.+|.|| |-| +||||.+|+.+.+++|+
T Consensus 141 ~E~~Giemi~VpM~~dG--------------PDmD~Ve~LV~~D~svKGiW-cVP~ySNPtG~tySde~vrrlA 199 (425)
T PF12897_consen 141 TEHFGIEMIPVPMTEDG--------------PDMDMVEELVAEDPSVKGIW-CVPKYSNPTGITYSDEVVRRLA 199 (425)
T ss_dssp HHHCT-EEEEEEEETTE--------------E-HHHHHHHTHTSTTEEEEE-E-SSS-TTT-----HHHHHHHH
T ss_pred HHhhCcEEEecCCCCCC--------------CCHHHHHHHHhcCCccceEE-eCCCccCCCCccCCHHHHHHHh
Confidence 57799999999999765 79999999983 5677776 556 99999999999999987
No 184
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.24 E-value=3.5e-06 Score=57.64 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=45.3
Q ss_pred CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCH-HHHHHHhC
Q psy790 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR-EELEVIAK 72 (72)
Q Consensus 5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~-~~l~~l~~ 72 (72)
.|++++.+++.. .+.+|++++++++.+++++|++++|+ |+|.+.+. ++|.++|+
T Consensus 132 ~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~ 186 (398)
T cd00613 132 LGIEVVEVPSDE-------------GGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAH 186 (398)
T ss_pred CCcEEEEeccCC-------------CCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHH
Confidence 358888888764 45689999999998899999999985 99999886 88888874
No 185
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.24 E-value=1.6e-06 Score=59.70 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=47.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+...|+++++++++++ +|.+|++++++++++++|+|+++ |++|...+.+++.++++
T Consensus 88 ~~~~G~~~v~~d~d~~------------~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~ 143 (375)
T PRK11706 88 FVLRGAKIVFVDIRPD------------TMNIDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAK 143 (375)
T ss_pred HHHcCCEEEEEecCCC------------cCCcCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHH
Confidence 3567999999999863 68899999999998899999965 57999999999998873
No 186
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=98.22 E-value=1.7e-06 Score=60.23 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=35.6
Q ss_pred eCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 33 LDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 33 ~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++++++++++.+ ++|+|++++|+||||.+++.++|.++++
T Consensus 124 ~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~ 164 (385)
T PRK08574 124 PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAK 164 (385)
T ss_pred CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHH
Confidence 357889999987 8999999999999999999999988873
No 187
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=98.18 E-value=4.2e-06 Score=58.95 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=52.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|.++.++|++. +..+|+++|+++++++|.+|.+..-||-+|++.+.++|.++++
T Consensus 112 e~~g~~Vtyl~V~~-------------~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k 168 (386)
T COG1104 112 ERQGFEVTYLPVDS-------------NGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICK 168 (386)
T ss_pred HhcCCeEEEeCCCC-------------CCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHH
Confidence 34689999999987 5679999999999999999999999999999999999999874
No 188
>PRK07505 hypothetical protein; Provisional
Probab=98.17 E-value=5.2e-06 Score=57.50 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=35.3
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++++++.++++++++++|+||||.+++.+++.++|+
T Consensus 168 d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~ 206 (402)
T PRK07505 168 DLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQE 206 (402)
T ss_pred CHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHH
Confidence 688899888777899999999999999999999999874
No 189
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.14 E-value=6.4e-06 Score=58.53 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=45.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++ ++ . |++++++++++++|+|++.+|.||+|.+.+.++|.++|+
T Consensus 130 ~~~Gi~v~~vd-~~-------------~---d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~ 182 (437)
T PRK05613 130 NRLGIEVTFVE-NP-------------D---DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAH 182 (437)
T ss_pred HhcCeEEEEEC-CC-------------C---CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 45788999888 32 1 689999999999999999999999999999999999874
No 190
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.13 E-value=5.1e-06 Score=57.85 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=34.1
Q ss_pred HHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 36 AELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 36 ~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+++++++++|+|++++|+||+|.+.+.++|.++|+
T Consensus 126 e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~ 162 (377)
T TIGR01324 126 EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAAR 162 (377)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 7788889889999999999999999999999998874
No 191
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.12 E-value=5.3e-06 Score=57.01 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=46.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++++++ ++.+|+++++++++ +++++|+ |+|++|...+.+++.++|+
T Consensus 87 ~~~G~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~~t~~v~---~~~~~G~~~~~~~i~~l~~ 145 (380)
T TIGR03588 87 LYCGAKVDFVDIDPD------------TGNIDEDALEKKLAAAKGKLPKAIV---PVDFAGKSVDMQAIAALAK 145 (380)
T ss_pred HHcCCEEEEEecCCC------------cCCcCHHHHHHHhhcccCCCceEEE---EeCCCCccCCHHHHHHHHH
Confidence 467999999999763 67799999999998 7899998 5567999999999998873
No 192
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.09 E-value=2.7e-06 Score=58.42 Aligned_cols=55 Identities=24% Similarity=0.475 Sum_probs=43.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|+++++++++++ +|.+|++.+++++++++|+|+ +.+..|...+.+++.++|+
T Consensus 83 ~~~G~~pv~~Di~~~------------~~~id~~~~~~~i~~~t~ai~---~~h~~G~~~d~~~i~~~~~ 137 (363)
T PF01041_consen 83 LWAGAEPVFVDIDPE------------TLNIDPEALEKAITPKTKAIL---VVHLFGNPADMDAIRAIAR 137 (363)
T ss_dssp HHTT-EEEEE-BETT------------TSSB-HHHHHHHHHTTEEEEE---EE-GGGB---HHHHHHHHH
T ss_pred HHhccEEEEEeccCC------------cCCcCHHHHHHHhccCccEEE---EecCCCCcccHHHHHHHHH
Confidence 468999999999975 899999999999999999999 7778999999999998873
No 193
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.09 E-value=6.9e-06 Score=57.68 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=42.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+|+++.+++.. |++++++++++++++|++.+|.||+..+.+.+.+.++++
T Consensus 116 ~~~gv~v~~~d~~------------------d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~ 167 (386)
T PF01053_consen 116 PRFGVEVTFVDPT------------------DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAK 167 (386)
T ss_dssp HHTTSEEEEESTT------------------SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHH
T ss_pred cccCcEEEEeCch------------------hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHH
Confidence 4478888888654 689999999999999999999999999999999999873
No 194
>KOG0053|consensus
Probab=98.08 E-value=7.1e-06 Score=58.15 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=43.5
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.+|++..+++++ +++.+++++.+++++||+.+|.||++.+.|++.+.++++
T Consensus 139 ~~gie~~~vd~~------------------~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~ 189 (409)
T KOG0053|consen 139 KFGGEGDFVDVD------------------DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAH 189 (409)
T ss_pred HhCceeeeechh------------------hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHh
Confidence 456666666655 477888999889999999999999999999999999875
No 195
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.07 E-value=4.1e-06 Score=57.15 Aligned_cols=28 Identities=43% Similarity=0.708 Sum_probs=25.4
Q ss_pred CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 44 SRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 44 ~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.++++|++++|+||||.+++.+++.+|+
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~ 168 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIV 168 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHH
Confidence 4789999999999999999999988775
No 196
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.05 E-value=1.2e-05 Score=48.16 Aligned_cols=59 Identities=31% Similarity=0.383 Sum_probs=43.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++.+... .+..+.+.+++.. .++++++++++|+||+|..++.+++.++++
T Consensus 60 ~~~g~~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~ 119 (170)
T cd01494 60 ELAGAKPVPVPVDDAG-----------YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAK 119 (170)
T ss_pred HhcCCEEEEeccCCCC-----------ccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHH
Confidence 5678899999887532 2333333554443 567899999999999999999999988763
No 197
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=98.02 E-value=1.2e-05 Score=57.04 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=51.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++.. ++.+|+++|++++.+++.+|+++..+|.||.+.+.++|.++++
T Consensus 156 ~~lg~~v~~i~~d~~------------~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~ 213 (431)
T TIGR01788 156 RYFDVELREVPMDPG------------RYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALD 213 (431)
T ss_pred HHcCceeEEEecCCC------------ceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHH
Confidence 456889999999762 4679999999999989999999999999999999999999874
No 198
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.00 E-value=8.8e-06 Score=56.24 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=38.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++++++.. .+ + .+.+++++|++++|+||+|.+.+.++|.++++
T Consensus 111 ~~~G~~v~~v~~~~-------------~~----~----~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~ 159 (366)
T PRK07582 111 APLGVTVREAPTAG-------------MA----E----AALAGADLVLAETPSNPGLDVCDLAALAAAAH 159 (366)
T ss_pred hcCeEEEEEECCCC-------------hH----H----HhccCceEEEEECCCCCCCCccCHHHHHHHHH
Confidence 34688888888753 11 1 22357999999999999999999999998874
No 199
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.00 E-value=9.5e-06 Score=56.26 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.9
Q ss_pred cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 43 SSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 43 ~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.+++++|++++|+||||.+++.+++.++++
T Consensus 176 ~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~ 205 (410)
T PRK13392 176 PDRPKLIAFESVYSMDGDIAPIEAICDLAD 205 (410)
T ss_pred CCCCEEEEEeCCCCCCcccccHHHHHHHHH
Confidence 357899999999999999999999998873
No 200
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=97.99 E-value=2.1e-05 Score=52.84 Aligned_cols=55 Identities=25% Similarity=0.472 Sum_probs=46.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++++.. +|.+|++.+++.+.+++++|+++ |++|.+.+.+++.++|+
T Consensus 76 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~l~~ 130 (352)
T cd00616 76 LLLGATPVFVDIDPD------------TYNIDPELIEAAITPRTKAIIPV---HLYGNPADMDAIMAIAK 130 (352)
T ss_pred HHcCCeEEEEecCCC------------cCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCCHHHHHHHHH
Confidence 457899999998752 67889999999998889999976 47999999999998873
No 201
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=97.95 E-value=2e-05 Score=55.70 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=47.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++.+|+++.+++-+ |++.++++++++||+|++.+-.||-+.+.+.+.+.++|+
T Consensus 122 l~~~Gi~v~fvd~~------------------d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh 174 (426)
T COG2873 122 LKRLGIEVRFVDPD------------------DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAH 174 (426)
T ss_pred HHhcCcEEEEeCCC------------------CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHH
Confidence 35789999998865 589999999999999999999999999999999999874
No 202
>KOG1549|consensus
Probab=97.90 E-value=2.6e-05 Score=55.58 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=51.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|.+++++|+.. ++..|++.+++.++++||++.+.+-+|-+|.+++.++|.++|+
T Consensus 152 ~~~g~~Vt~lpv~~-------------~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr 208 (428)
T KOG1549|consen 152 QEEGLEVTYLPVED-------------SGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICR 208 (428)
T ss_pred HhcCeEEEEeccCc-------------cccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhC
Confidence 45678999999984 6678999999999999999999999999999999999998874
No 203
>PRK02769 histidine decarboxylase; Provisional
Probab=97.89 E-value=1.6e-05 Score=55.50 Aligned_cols=57 Identities=19% Similarity=0.126 Sum_probs=48.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC---ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR---TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|.+.+.|+..+ ++.+|+++|++++.++ +.+|+++.++|+||.+.+.++|.++++
T Consensus 128 ~~lg~~~~~V~~~~-------------~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~ 187 (380)
T PRK02769 128 RLLRIKSRVITSLP-------------NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILK 187 (380)
T ss_pred HHcCCCCceeccCC-------------CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence 45677777788764 5678999999998765 899999999999999999999998873
No 204
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=97.87 E-value=3.1e-05 Score=59.91 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=49.7
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|+++|++++++ ++++|++++|+|-+|...+.++|.++++
T Consensus 634 ~~~G~~vv~v~~d~-------------~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah 693 (993)
T PLN02414 634 AMCGMKIVVVGTDA-------------KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIH 693 (993)
T ss_pred HHCCCEEEEeccCC-------------CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHH
Confidence 34689999999975 557899999999974 7899999999999999999999998873
No 205
>PRK07179 hypothetical protein; Provisional
Probab=97.87 E-value=3e-05 Score=53.70 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=34.8
Q ss_pred eCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 33 LDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 33 ~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.|++.+++++.+ .+++|++++|+||||.+++.++|.++++
T Consensus 168 ~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~ 208 (407)
T PRK07179 168 NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAE 208 (407)
T ss_pred CCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHH
Confidence 378999988865 4788999999999999999999998874
No 206
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=97.85 E-value=2.9e-05 Score=53.84 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=36.9
Q ss_pred CceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++.++++.+++.+ .++|++|++++++|.||.+++.++|.++|+
T Consensus 153 ~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~ 198 (406)
T TIGR01814 153 EETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAH 198 (406)
T ss_pred CCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHH
Confidence 4557888888776 468999999999999999999999999874
No 207
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=97.83 E-value=3.7e-05 Score=54.39 Aligned_cols=52 Identities=31% Similarity=0.405 Sum_probs=41.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+++.+++.. +.+++++++. ++||+|++.+|+||+..+.|.+++.++++
T Consensus 124 ~~~gi~~~~~d~~------------------~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~ 176 (396)
T COG0626 124 QKFGVEVTFVDPG------------------DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAK 176 (396)
T ss_pred HhcCeEEEEECCC------------------ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHH
Confidence 4577777777654 3455666665 59999999999999999999999999874
No 208
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=97.83 E-value=4.2e-05 Score=54.26 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=46.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|+++++++++.. +|.+|++.+++++++++|+|++++ ++|...+.++|.++|+
T Consensus 129 ~~~G~~pv~vdvd~~------------~~~id~~~le~~i~~~tkaVi~~~---~~G~p~dl~~I~~la~ 183 (438)
T PRK15407 129 IQNGLVPVFVDVELP------------TYNIDASLLEAAVSPKTKAIMIAH---TLGNPFDLAAVKAFCD 183 (438)
T ss_pred HHcCCEEEEEecCCC------------cCCcCHHHHHHHcCcCCeEEEEeC---CCCChhhHHHHHHHHH
Confidence 457899999998753 788999999999988999999776 4777889999988873
No 209
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.78 E-value=5e-05 Score=50.85 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=31.6
Q ss_pred CHHHHHhhhc-----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFS-----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~-----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|.+.+++.+. .+++++++++|+||||...+.++|.++|+
T Consensus 116 ~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~ 159 (349)
T cd06454 116 DMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAK 159 (349)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHH
Confidence 5566776664 35688999999999999999999998874
No 210
>PRK05968 hypothetical protein; Provisional
Probab=97.77 E-value=4.2e-05 Score=53.34 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=41.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+++++++.. |++++++++ +++|+|++++|+||++.+.+.+++.++++
T Consensus 124 ~~~G~~v~~vd~~------------------d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~ 174 (389)
T PRK05968 124 KRMGVEVDYVDGR------------------DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAK 174 (389)
T ss_pred HHcCceEEEeCCC------------------CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 3467777777643 578888887 57999999999999999999999888763
No 211
>PLN03032 serine decarboxylase; Provisional
Probab=97.76 E-value=3.4e-05 Score=54.01 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=48.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|.+++.||++. ++.+|+++|++++.+ ++.+|+++..+|+||.+-+.++|.++++
T Consensus 129 ~~lg~~~~~V~~d~-------------~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~ 188 (374)
T PLN03032 129 RMYRMEAVKVPTLP-------------SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILK 188 (374)
T ss_pred HHcCCCCeEeeeCC-------------CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHH
Confidence 45677788888875 667999999999976 4678888899999999999999999873
No 212
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.74 E-value=6.2e-05 Score=58.01 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=47.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCC-HHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFT-REELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~-~~~l~~l~~ 72 (72)
+..|++++.|+++. ++.+|+++|++++. .++++|++++|+| +|.+-+ .++|.++++
T Consensus 596 ~~~G~~Vv~V~~d~-------------~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah 655 (939)
T TIGR00461 596 AMAGMQVVPVNCDQ-------------DGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVH 655 (939)
T ss_pred HHCCCEEEEeccCC-------------CCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHH
Confidence 46789999999875 56799999999996 4899999999999 899887 888888763
No 213
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=97.65 E-value=7e-05 Score=51.12 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=49.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++.+. +..+|++++++.+.+++++|++++-+|-||..++.++|.++++
T Consensus 110 ~~~g~~v~~i~~~~-------------~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~ 166 (371)
T PF00266_consen 110 KRKGAEVRVIPADP-------------GGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAH 166 (371)
T ss_dssp HHTTEEEEEEEEGT-------------TSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHH
T ss_pred ccchhhhccccccc-------------cchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhh
Confidence 35789999999875 3457899999999999999999999999999999999998863
No 214
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=97.64 E-value=8e-05 Score=51.38 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=33.3
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
.|++.+++.+.+++++|++++|+||+|.+++ .+++.++|
T Consensus 175 ~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~ 217 (401)
T PRK00854 175 GDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELC 217 (401)
T ss_pred CCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence 4789999999889999999999999999998 55555555
No 215
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.63 E-value=0.00021 Score=49.15 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=44.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|+++..+++..+. .+|.+|++++++++. ++++++++++|+|| ...+.++|.++++
T Consensus 127 ~~~~g~~~~~~~~~~~~----------~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~ 186 (402)
T cd00378 127 VSASGKLFESVPYGVDP----------ETGLIDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIAD 186 (402)
T ss_pred ccccceeEEEecCCcCc----------ccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHH
Confidence 34467777777765421 157899999999984 68999999999886 5678888888863
No 216
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=97.61 E-value=0.00016 Score=49.97 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=31.7
Q ss_pred CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|.+.+++.+. .++++|++++|+||+|.+.+.++|.++|+
T Consensus 162 d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~ 204 (402)
T TIGR01821 162 DVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLAD 204 (402)
T ss_pred CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence 4566666553 25789999999999999999999999874
No 217
>PRK04311 selenocysteine synthase; Provisional
Probab=97.58 E-value=0.00021 Score=51.31 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=44.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcc----ccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPL----GKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt----G~~~~~~~l~~l~~ 72 (72)
+..|+++++++.... .++++++++++++|++|++.+++||+ +...+.+++.++++
T Consensus 189 ~~~G~~l~~v~~~~~---------------t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak 247 (464)
T PRK04311 189 RQAGARLVEVGTTNR---------------THLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGK 247 (464)
T ss_pred HHCCcEEEEECCCCC---------------CCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHH
Confidence 456888888876431 36889999999999999999999993 46789999998874
No 218
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00026 Score=50.03 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=43.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEe-CCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILN-TPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~-~P~NPtG~~~~~~~l~~l~~ 72 (72)
++..|.++...|.-... +-.+|++.+...+.. ...+|+|. ..|||||.-++.+++.+|++
T Consensus 137 f~~aGl~v~~Y~Yyd~~-----------~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~ 199 (396)
T COG1448 137 FEAAGLEVETYPYYDAE-----------TKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELAD 199 (396)
T ss_pred HHhcCCceeeeeccccc-----------cccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHH
Confidence 35678899888876543 445888888777743 33444444 34999999999999998863
No 219
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=97.44 E-value=0.00028 Score=50.56 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=46.6
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCC-CccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPH-NPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~-NPtG~~~~~~~l~~l~~ 72 (72)
+...|+++++++...+. ++|.+|++++++++.+ ++.++++++|+ .++|...+.++|.++|+
T Consensus 168 i~~~G~~pv~Vd~~~d~----------~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~ 232 (444)
T TIGR03531 168 ISTAGFEPRVIETVLDG----------DELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICA 232 (444)
T ss_pred HHHcCCeEEEeeeeecC----------cCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHH
Confidence 35689999999963211 1799999999999975 56778888885 55668888999888873
No 220
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=97.43 E-value=0.00044 Score=49.57 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=45.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcc--c--cCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPL--G--KVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt--G--~~~~~~~l~~l~~ 72 (72)
+..|+++++++.... .++++++++++++|++|++.+++|++ | .+.+.+++.++|+
T Consensus 184 ~~~G~~~~~v~~~~~---------------~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~ 242 (454)
T TIGR00474 184 EQSGAKLVEVGTTNR---------------THLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGR 242 (454)
T ss_pred HHcCCEEEEeCCCCC---------------CCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHH
Confidence 456888888876431 36899999999999999999999995 5 5889999998874
No 221
>PRK06434 cystathionine gamma-lyase; Validated
Probab=97.43 E-value=0.00023 Score=49.96 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=40.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+|+++++++++..+ .+.++ ..++|+|++.+|.|||+.+.+.++|.++++
T Consensus 125 ~~~Gi~v~fvd~~~~~-----------~~~l~--------~~~tklv~~e~~snpt~~v~Di~~I~~la~ 175 (384)
T PRK06434 125 KTLGIHVDYIDTDRLN-----------SLDFD--------PSNYDLIYAESITNPTLKVPDIKNVSSFCH 175 (384)
T ss_pred HhcCcEEEEECCCChh-----------heeec--------CCCeeEEEEEcCCCCCceeecHHHHHHHHH
Confidence 4578999999987522 33322 136899999999999999999999999874
No 222
>KOG0634|consensus
Probab=97.41 E-value=0.00046 Score=49.56 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=41.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---C----c-cEEEEeCC--CCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---R----T-KLIILNTP--HNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~----~-~~i~l~~P--~NPtG~~~~~~~l~~l~ 71 (72)
++..|++++.|+++.. .++++.|++.+.. . . .-|+.+-| +||||..++.+..++|.
T Consensus 165 ~~a~gv~~ipv~md~~--------------Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy 230 (472)
T KOG0634|consen 165 MEALGVKIIPVKMDQD--------------GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIY 230 (472)
T ss_pred ccccCceEEeccccCC--------------CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHH
Confidence 4678889999988754 3788888887631 1 1 23556666 89999999999888764
No 223
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=97.40 E-value=0.00036 Score=46.72 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.9
Q ss_pred CHHHHHhhhcC----CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSS----RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~----~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.+++.+.. ++++|++++++||||...+.++|.++|+
T Consensus 131 d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~ 173 (360)
T TIGR00858 131 DVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAE 173 (360)
T ss_pred CHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHH
Confidence 67888887753 4788999999999999999999999874
No 224
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=97.37 E-value=0.0003 Score=47.75 Aligned_cols=56 Identities=32% Similarity=0.514 Sum_probs=42.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPL-GKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPt-G~~~~~~~l~~l~ 71 (72)
...|++++.++... +..+++++|++.+.. ++++|+|++|+|.. |++++.++|++|.
T Consensus 89 ~~~G~~~~~l~~~~-------------~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~ 151 (290)
T PF01212_consen 89 ELSGAKLIPLPSDD-------------DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS 151 (290)
T ss_dssp HHTTCEEEEEBECT-------------GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred HhcCcEEEECCCcc-------------cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence 34688888888764 367899999998843 57899999999985 8999999999885
No 225
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=97.35 E-value=0.0003 Score=48.15 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.3
Q ss_pred eCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 33 LDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 33 ~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.|++++++++.+ ++++|++++++||||.+.+.++|.++|+
T Consensus 152 ~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~ 197 (393)
T TIGR01822 152 NDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLAD 197 (393)
T ss_pred CCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHH
Confidence 578888887753 6889999999999999999999998874
No 226
>PRK09064 5-aminolevulinate synthase; Validated
Probab=97.34 E-value=0.00033 Score=48.42 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=32.4
Q ss_pred CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.+++.+. +++++|++++|+||+|.+.+.++|.++++
T Consensus 163 d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~ 205 (407)
T PRK09064 163 DVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLAD 205 (407)
T ss_pred CHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHH
Confidence 5566666653 46899999999999999999999999874
No 227
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=97.32 E-value=0.00037 Score=47.87 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=32.9
Q ss_pred eCHHHHHhhhc------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 33 LDPAELESKFS------SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 33 ~d~~~l~~~~~------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.|++.+++.++ +.+++|++++++|++|.+.+.++|.++++
T Consensus 125 ~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~ 170 (370)
T PRK05937 125 NDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSK 170 (370)
T ss_pred CCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHH
Confidence 47888888775 23567788999999999999999999874
No 228
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=97.29 E-value=0.00062 Score=47.22 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 6 g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++++.++++.+ ++.+|+++++++++. ++|+|++++++| |...+.++|.++++
T Consensus 137 g~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~k~v~~~~~~~--~~~~~~~~I~~la~ 190 (416)
T PRK00011 137 LYNVVSYGVDEE------------TGLIDYDEVEKLALEHKPKLIIAGASAY--SRPIDFKRFREIAD 190 (416)
T ss_pred eeeEeecCcCcc------------cCCcCHHHHHHHHHhcCCCEEEECCCcC--CCccCHHHHHHHHH
Confidence 567777777642 577999999999864 799999887655 46778999988873
No 229
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=97.29 E-value=0.00039 Score=48.20 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=31.5
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCH----HHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTR----EELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~----~~l~~l~ 71 (72)
|++++++.+.+++++|+++.|+||+|.+++. +++.++|
T Consensus 175 d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~ 216 (396)
T PRK04073 175 DLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELC 216 (396)
T ss_pred CHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHH
Confidence 6889999888889999999999999999984 4555555
No 230
>KOG1383|consensus
Probab=97.22 E-value=0.00064 Score=49.15 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=52.5
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++.++++++.||+++. +|.+|+.++.+.++++|.+++..-|+-|+|.+=+.+++.+++
T Consensus 187 a~yf~v~l~~V~~~~~------------~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~ 244 (491)
T KOG1383|consen 187 ARYFEVELREVPLDEG------------DYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLL 244 (491)
T ss_pred HhhEEEEEEeeecccc------------ceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHH
Confidence 4667889999999973 899999999999999999999999999999999999888764
No 231
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=97.10 E-value=0.00082 Score=46.26 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=31.9
Q ss_pred CHHHHHhhhc-CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 34 DPAELESKFS-SRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
|++++++.+. +++++|++..++||+|.+++ .++|.++|
T Consensus 166 d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~ 208 (400)
T PTZ00125 166 DVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELC 208 (400)
T ss_pred CHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHH
Confidence 7899999885 67899999999999999998 56666655
No 232
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.00078 Score=47.06 Aligned_cols=40 Identities=33% Similarity=0.543 Sum_probs=33.0
Q ss_pred CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.|+.|++++. +..++-+|+++-|.||||.+++.+++.+|.
T Consensus 166 KY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kld 205 (417)
T COG3977 166 KYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLD 205 (417)
T ss_pred eeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHH
Confidence 3567776663 456789999999999999999999998874
No 233
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=97.08 E-value=0.0014 Score=45.52 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=31.1
Q ss_pred CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.+++.+. +++++|++++++|++|.+.+.+++.++++
T Consensus 162 d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~ 204 (406)
T PRK13393 162 DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAE 204 (406)
T ss_pred CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHH
Confidence 4555655543 35789999999999999999999998874
No 234
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=97.06 E-value=0.001 Score=45.94 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=32.2
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
|++.+++.+.+++++|+++.++||+|.+++ .+++.++|
T Consensus 172 d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~ 213 (398)
T PRK03244 172 DVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREIT 213 (398)
T ss_pred CHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHH
Confidence 788999888778999999999999999998 55666665
No 235
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=96.93 E-value=0.0015 Score=44.78 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLG-KVFTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~l~ 71 (72)
|++++++++.+++++|+++.++||+| .+++.+.+++|.
T Consensus 171 d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~ 209 (396)
T PRK02627 171 DIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALR 209 (396)
T ss_pred CHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHH
Confidence 78999999988899999999999999 688877776664
No 236
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=96.92 E-value=0.0022 Score=43.47 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=31.0
Q ss_pred CHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.+++.+.. .++++++.+++||+|...+.++|.++|+
T Consensus 154 d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~ 195 (385)
T PRK05958 154 DVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALAR 195 (385)
T ss_pred CHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHH
Confidence 67888888754 3556667788999999999999998874
No 237
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=96.91 E-value=0.0015 Score=44.55 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=32.6
Q ss_pred eCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 33 LDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 33 ~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+|++++++.+. +++++|++++++||||.+.+.++|.++|+
T Consensus 147 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~ 190 (385)
T TIGR01825 147 ADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAE 190 (385)
T ss_pred CCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHH
Confidence 46777776654 36889999999999999999999998874
No 238
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=96.79 E-value=0.004 Score=45.07 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=36.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHN 56 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~N 56 (72)
.+.|.+++.|+++. +..+|+++|++++..++.+++++|||-
T Consensus 175 am~G~~VV~V~~~~-------------~G~VDlddLk~k~~~~~AalMiTnPsT 215 (496)
T COG1003 175 AMAGFKVVVVKCDE-------------NGNVDLDDLRAKAEDNLAALMITNPST 215 (496)
T ss_pred hhcCceEEEEecCC-------------CCCccHHHHHHHhccceeEEEeccCcc
Confidence 56799999999987 566899999999999999999999963
No 239
>PRK12566 glycine dehydrogenase; Provisional
Probab=96.77 E-value=0.0032 Score=48.93 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=45.9
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...|++++.++.+. +..+|+++|++++. .++.+|++.+|++-.+...+.++|.+++
T Consensus 609 ~~~GieVv~Vp~D~-------------~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~ia 667 (954)
T PRK12566 609 QMAGMRVVIVECDP-------------DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVV 667 (954)
T ss_pred HHCCCEEEEeccCC-------------CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHH
Confidence 45789999999875 45689999999986 5788899999988877766788888776
No 240
>PLN02822 serine palmitoyltransferase
Probab=96.74 E-value=0.0015 Score=46.84 Aligned_cols=58 Identities=10% Similarity=0.223 Sum_probs=39.7
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh--cCCc-cEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF--SSRT-KLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~-~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..++++++++..... +|...++++++.. .+++ ++|+++.++|++|.+++.+++.++++
T Consensus 212 ls~~~~~~~~~nd~~-----------~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~ 272 (481)
T PLN02822 212 LSRSTIVYFKHNDME-----------SLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKE 272 (481)
T ss_pred HcCCeEEEECCCCHH-----------HHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHH
Confidence 456777777765422 4444444444332 1345 68999999999999999999998873
No 241
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=96.71 E-value=0.0034 Score=45.82 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=43.9
Q ss_pred ccCCC---eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEe--CCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGG---VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILN--TPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~--~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|+ +++.||++. ++.+|+++|++++. .+++.++++ .-++.||.+-+.++|.++|+
T Consensus 227 ~~lglg~~~v~~vp~d~-------------~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~ 292 (522)
T TIGR03799 227 DVLGIGRDNLIAIKTDA-------------NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQ 292 (522)
T ss_pred HHcCCCcccEEEEEeCC-------------CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHH
Confidence 34555 788899875 67899999999885 456665555 45679999999999999874
No 242
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=96.70 E-value=0.003 Score=43.55 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=33.6
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLG-KVFTREELEVIA 71 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~l~ 71 (72)
.|++++++.+.+++++|+++.++||+| .+++.+.+.+|.
T Consensus 163 ~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~ 202 (389)
T PRK01278 163 GDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLR 202 (389)
T ss_pred CCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHH
Confidence 588999999988899999998889998 788888888775
No 243
>KOG1368|consensus
Probab=96.51 E-value=0.0077 Score=42.08 Aligned_cols=42 Identities=38% Similarity=0.541 Sum_probs=36.0
Q ss_pred CceeCHHHHHhhhc--------CCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790 30 DFKLDPAELESKFS--------SRTKLIILNTPHNPLG-KVFTREELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~--------~~~~~i~l~~P~NPtG-~~~~~~~l~~l~ 71 (72)
+..++++++++++. +.||+|++.|-||-+| .+++.+++.++.
T Consensus 131 dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~ 181 (384)
T KOG1368|consen 131 DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVK 181 (384)
T ss_pred CCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHH
Confidence 66789999999985 2489999999999888 999999988764
No 244
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=96.41 E-value=0.007 Score=43.70 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=33.4
Q ss_pred CceeCHHHHHhhhcC----CccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790 30 DFKLDPAELESKFSS----RTKLIILNTPHNPL-GKVFTREELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~----~~~~i~l~~P~NPt-G~~~~~~~l~~l~ 71 (72)
++.+|++++++++++ ++++|.+.+++|-. |.+++.+.++++.
T Consensus 151 ~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~ 197 (450)
T TIGR02618 151 KGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVR 197 (450)
T ss_pred CCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHH
Confidence 678999999999975 45578899999976 8998876666553
No 245
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=96.36 E-value=0.0092 Score=40.65 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=30.9
Q ss_pred CHHHHHhhhc----C--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFS----S--RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~----~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.+++.++ + ++++|++.+.+||+|...+.++|.++|+
T Consensus 157 d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~ 201 (397)
T PRK06939 157 DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLAD 201 (397)
T ss_pred CHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHH
Confidence 5677776664 2 6778887778999999999999998873
No 246
>PRK05367 glycine dehydrogenase; Provisional
Probab=96.30 E-value=0.01 Score=46.14 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=45.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..|++++.++++. ++.+|+++|++++.+ ++.+|++++|++-.+...+.++|.++++
T Consensus 608 ~~~G~~vv~v~~d~-------------~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h 667 (954)
T PRK05367 608 VMAGMKVVVVACDE-------------NGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVH 667 (954)
T ss_pred HHCCCEEEEECCCC-------------CCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHH
Confidence 46789999999875 456899999998854 4678899999887444578999988863
No 247
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=96.29 E-value=0.0071 Score=41.16 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.9
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccC-CCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKV-FTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~ 71 (72)
|++.+++.+.+++++|+++.++||+|.. ++.+.+.+|.
T Consensus 159 d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~ 197 (379)
T TIGR00707 159 DIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALR 197 (379)
T ss_pred CHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHH
Confidence 7899999988889999997667777764 5766665553
No 248
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=96.19 E-value=0.0071 Score=43.61 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=51.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccE--EEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKL--IILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~--i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++.+|++.+.+++.+. ++.+|++++++++.+.+-. |+.+-+.-+||.+=+.++|.+||+
T Consensus 174 a~~lG~~~~~v~~~~~------------~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~ 234 (460)
T COG0076 174 ARYLGLGLRRVPTVPT------------DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAE 234 (460)
T ss_pred HHHhCCCceeEEeccC------------ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHH
Confidence 4678999999999873 6889999999999887766 888889999999999999999874
No 249
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=96.13 E-value=0.0095 Score=41.59 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=25.5
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++++|++.+|.||+|.+.+.+++.++++
T Consensus 138 ~t~~vi~E~v~~~~G~i~~l~~i~~l~~ 165 (392)
T PLN03227 138 QRRFLVVEGLYKNTGTLAPLKELVALKE 165 (392)
T ss_pred CcEEEEEcCCcCCCCcccCHHHHHHHHH
Confidence 6889999999999999999999998874
No 250
>PLN02263 serine decarboxylase
Probab=96.04 E-value=0.012 Score=42.62 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=47.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCc---cEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT---KLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++.+|++++.||.+. ++.+|+++|++++..++ -+|+.+-..-++|.+=+.++|.++++
T Consensus 195 a~llgi~~~~Vp~d~-------------~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~ 255 (470)
T PLN02263 195 ARMYRMECVKVDTLV-------------SGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLE 255 (470)
T ss_pred HHhcCCcceEeccCC-------------CCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHH
Confidence 456888999999875 77899999999886443 45666778899999999999999873
No 251
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=95.97 E-value=0.013 Score=40.76 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=29.1
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCC--CHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVF--TREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~l~ 71 (72)
|++.+++.+.+++++|+++ |.||+|.++ +.+.+++|+
T Consensus 173 d~~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~ 211 (403)
T PRK05093 173 DLAAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLR 211 (403)
T ss_pred CHHHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHH
Confidence 7899999887788888887 999998876 666666554
No 252
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=95.81 E-value=0.027 Score=41.17 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=36.7
Q ss_pred CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..+|.+++++.+.++++.|+++..+|- |...+.+++.+|++
T Consensus 204 ~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~ 245 (493)
T PRK13580 204 TGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIAD 245 (493)
T ss_pred cCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHH
Confidence 4668999999999989999999999888 55889999999874
No 253
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=95.76 E-value=0.017 Score=39.71 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=27.3
Q ss_pred CceeCHHHHHhhhcC---CccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 30 DFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
.+..|++.+++.+.. ++++++++..+|++|.+++ .++|.++|
T Consensus 173 ~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~ 221 (413)
T cd00610 173 ELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELC 221 (413)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence 355688999988865 4455555444666799886 55555554
No 254
>PLN02724 Molybdenum cofactor sulfurase
Probab=95.60 E-value=0.025 Score=43.06 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=39.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeC--HHHHHhhh----------cCCccEEEEeCCCCccccCCCHHHHHHH
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD--PAELESKF----------SSRTKLIILNTPHNPLGKVFTREELEVI 70 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d--~~~l~~~~----------~~~~~~i~l~~P~NPtG~~~~~~~l~~l 70 (72)
+..|+++++++++..... .......++ .+++++.+ .+++++|.+++-+|-||.+++.+.+..+
T Consensus 143 ~~~G~~v~~v~~~~~~~~-----~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~ 217 (805)
T PLN02724 143 LEKGAAAIAVDIEEAANQ-----PTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLI 217 (805)
T ss_pred HHcCCeEEeccchhcccc-----ccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHH
Confidence 456889999988632100 000012232 25565543 2467899999999999999999977544
No 255
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=95.52 E-value=0.032 Score=39.59 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++++|++++.+.... .-.+++++++++++ +..++|.+.+-=-+||...+.++|.++++
T Consensus 99 a~~~g~~v~~~~~~w-------------g~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k 158 (383)
T COG0075 99 AERYGAEVVVLEVEW-------------GEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAK 158 (383)
T ss_pred HHHhCCceEEEeCCC-------------CCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHH
Confidence 567899999988874 34578999999997 45789999999999999999999998874
No 256
>PLN02271 serine hydroxymethyltransferase
Probab=95.32 E-value=0.05 Score=40.56 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=35.1
Q ss_pred CceeCHHHHHh-hhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELES-KFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~-~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++.+|.+++++ +...++|+|++..-.+| ..++.+++.+||+
T Consensus 282 ~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAd 323 (586)
T PLN02271 282 TGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIAD 323 (586)
T ss_pred cCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHH
Confidence 56799999998 55788999999888888 8899999999874
No 257
>PLN02880 tyrosine decarboxylase
Probab=94.87 E-value=0.049 Score=39.42 Aligned_cols=59 Identities=20% Similarity=0.176 Sum_probs=44.8
Q ss_pred ccCCCe---EEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGV---PIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+|+. ++.||++..+ .+.+|+++|++++... +-+|+-+-..-.||.+-+.++|.++|+
T Consensus 199 ~~lGlg~~~v~~Vp~d~~~-----------~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~ 266 (490)
T PLN02880 199 QIAGIHPENCRLLKTDSST-----------NYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAK 266 (490)
T ss_pred HHcCCCHHHEEEeecCCCc-----------CCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHH
Confidence 445653 7788887543 7889999999988532 345666677889999999999999874
No 258
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=94.80 E-value=0.09 Score=37.54 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=34.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeC-CCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNT-PHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~-P~NPtG~~~~~~~l~~l~ 71 (72)
+-+|+....+++.+ +..+|++.+++++++++|++++-- -.=-+=..++.++|++++
T Consensus 125 ~e~Gi~Y~~v~L~~-------------dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i 181 (403)
T PF06838_consen 125 KEFGIKYREVPLTE-------------DGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEII 181 (403)
T ss_dssp GGGT-EEEE--B-T-------------TSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHH
T ss_pred HHhCceeEEEeecC-------------CCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHH
Confidence 56789999999987 566899999999999999988653 232333345677777665
No 259
>PLN02483 serine palmitoyltransferase
Probab=94.58 E-value=0.1 Score=37.64 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.0
Q ss_pred cEEEEeCC-CCccccCCCHHHHHHHhC
Q psy790 47 KLIILNTP-HNPLGKVFTREELEVIAK 72 (72)
Q Consensus 47 ~~i~l~~P-~NPtG~~~~~~~l~~l~~ 72 (72)
++++++++ .|++|.+.+.++|.++++
T Consensus 241 k~livve~v~s~~G~~~~l~~I~~la~ 267 (489)
T PLN02483 241 KIIVIVEGIYSMEGELCKLPEIVAVCK 267 (489)
T ss_pred eEEEEECCCCCCCCcccCHHHHHHHHH
Confidence 65666655 699999999999999874
No 260
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=94.50 E-value=0.083 Score=38.39 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred CceeCHHHHHhhhcC----CccEEEEeCCCCcc-ccCCCHHHHHHH
Q psy790 30 DFKLDPAELESKFSS----RTKLIILNTPHNPL-GKVFTREELEVI 70 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~----~~~~i~l~~P~NPt-G~~~~~~~l~~l 70 (72)
+|.+|++++++++++ +++++.+.+++|.. |.+++.+.+.++
T Consensus 158 tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I 203 (460)
T PRK13237 158 KGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAV 203 (460)
T ss_pred CCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHH
Confidence 688999999999864 34567888899999 788876555544
No 261
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=94.44 E-value=0.043 Score=38.40 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=42.7
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---C--cc-EEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---R--TK-LIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~--~~-~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..+|+.++.||+++ ++.+|+++|++++.. + +- +|+.+-..-.||.+=+.++|.+|++
T Consensus 158 a~~lGlg~~~I~~~~-------------~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~ 221 (373)
T PF00282_consen 158 ARILGLGVRKIPTDE-------------DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICE 221 (373)
T ss_dssp HHHTTSEEEEE-BBT-------------TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHH
T ss_pred cceeeeEEEEecCCc-------------chhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcc
Confidence 456788999999987 678999999988743 2 22 5667778899999999999999874
No 262
>PLN02624 ornithine-delta-aminotransferase
Probab=94.44 E-value=0.065 Score=38.49 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.8
Q ss_pred CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
|++.+++.+. .++.+|++..++|++|.+++ .++|.++|
T Consensus 210 d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc 254 (474)
T PLN02624 210 DLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELC 254 (474)
T ss_pred CHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 5788888774 45788999999999999998 55555554
No 263
>KOG1411|consensus
Probab=94.16 E-value=0.14 Score=36.45 Aligned_cols=42 Identities=31% Similarity=0.312 Sum_probs=29.8
Q ss_pred CceeCHHHHHhhhcCCc-cEEEEeC--CCCccccCCCHHHHHHHh
Q psy790 30 DFKLDPAELESKFSSRT-KLIILNT--PHNPLGKVFTREELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~-~~i~l~~--P~NPtG~~~~~~~l~~l~ 71 (72)
.-.+|++.+.+.+...+ ..+++.+ .|||||.--+.+++++|.
T Consensus 180 t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~ 224 (427)
T KOG1411|consen 180 TRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKIS 224 (427)
T ss_pred ccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHH
Confidence 45678877777665433 2344443 499999999999998875
No 264
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=94.14 E-value=0.14 Score=36.43 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=31.9
Q ss_pred CceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++.+|+++|++.+.. +++++++.+ +.+|...|.++|.++|+
T Consensus 166 ~g~id~~~L~~~l~~~~~~lvi~~~--s~~g~~~di~~I~~i~~ 207 (452)
T PTZ00094 166 KGLIDYDKLEELAKAFRPKLIIAGA--SAYPRDIDYKRFREICD 207 (452)
T ss_pred CCCcCHHHHHHHHHHhCCCEEEEeC--CCCCCccCHHHHHHHHH
Confidence 456899999999853 677776543 35999999999998874
No 265
>KOG2862|consensus
Probab=94.03 E-value=0.15 Score=35.98 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=45.0
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCC-HHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFT-REELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~-~~~l~~l~ 71 (72)
.++.|+++..++.+. +-..+++.+.+++. .+++++++++--.-||...+ .+.+.+++
T Consensus 111 ~~r~ga~V~~v~~~~-------------G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc 169 (385)
T KOG2862|consen 111 ARRYGAEVDVVEADI-------------GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELC 169 (385)
T ss_pred HHhhCceeeEEecCc-------------ccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHh
Confidence 467899999998765 34567899988885 46899999999999999999 55555554
No 266
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=94.02 E-value=0.14 Score=35.91 Aligned_cols=42 Identities=33% Similarity=0.510 Sum_probs=33.7
Q ss_pred CceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 30 DFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..+++++++..+.+ .+.++++-|.+|-.|++++.++|++|.
T Consensus 109 ~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~ 156 (342)
T COG2008 109 DGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAIS 156 (342)
T ss_pred CCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHH
Confidence 677999999997642 356777777777889999999999875
No 267
>KOG1412|consensus
Probab=93.82 E-value=0.19 Score=35.50 Aligned_cols=43 Identities=35% Similarity=0.403 Sum_probs=31.7
Q ss_pred CceeCHHHHHhhhcCCc--cEEEEeCC-CCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKFSSRT--KLIILNTP-HNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~--~~i~l~~P-~NPtG~~~~~~~l~~l~~ 72 (72)
.-.+|++.+...+...+ ..++++.. |||||.-.+.|++..|++
T Consensus 160 ~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~ 205 (410)
T KOG1412|consen 160 NKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIAD 205 (410)
T ss_pred CceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHH
Confidence 44578888888875433 34444444 999999999999988863
No 268
>PLN02590 probable tyrosine decarboxylase
Probab=93.73 E-value=0.14 Score=37.73 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=45.0
Q ss_pred ccCCC---eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGG---VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+|+ .++.||++..+ .|.+|+++|++++... +-+|+-+-..=.||.+=+.++|.++|+
T Consensus 247 ~ilGlg~~~vr~Vp~d~~~-----------~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~ 314 (539)
T PLN02590 247 LIGGIHEENIRLLKTDSST-----------NYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAK 314 (539)
T ss_pred HHcCCCcccEEEEeCCCCC-----------CCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence 34555 58888887543 7899999999998542 345666667888999999999999874
No 269
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=93.71 E-value=0.11 Score=35.76 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=30.8
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
|++.+++.+.+++.+|++..++|++|...+ .+++.++|
T Consensus 154 dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~ 195 (375)
T PRK04260 154 DLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYC 195 (375)
T ss_pred CHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHH
Confidence 788999888777889999999999999876 35555554
No 270
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=93.08 E-value=0.18 Score=35.27 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.4
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccccCC--CHHHHHHHh
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLGKVF--TREELEVIA 71 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~l~ 71 (72)
.|++.+++.+.+++++|++ .|.|++|-++ +.+.+++|.
T Consensus 171 ~d~~~l~~~l~~~~aavii-EPv~~~gg~~~~~~~~l~~l~ 210 (406)
T PRK12381 171 NDLNSASALIDDQTCAVIV-EPIQGEGGVIPADKAFLQGLR 210 (406)
T ss_pred CCHHHHHHhccCCeeEEEE-eCCcCCCCCcCCCHHHHHHHH
Confidence 3788999988777888777 6999999765 567666654
No 271
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=92.86 E-value=0.2 Score=34.98 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=26.3
Q ss_pred CHHHHHhhhc---CCccEEEEe-CCCCccccCCCH-HHHHHH
Q psy790 34 DPAELESKFS---SRTKLIILN-TPHNPLGKVFTR-EELEVI 70 (72)
Q Consensus 34 d~~~l~~~~~---~~~~~i~l~-~P~NPtG~~~~~-~~l~~l 70 (72)
|++++++.+. .++++|++. .|+| +|.+++. +.+.+|
T Consensus 181 d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l 221 (423)
T TIGR00713 181 DLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGL 221 (423)
T ss_pred CHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHH
Confidence 6888988885 567888885 8899 7988883 434333
No 272
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=92.06 E-value=0.32 Score=33.26 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=30.3
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCC-CHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVF-TREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~l~ 71 (72)
|++.+++.+.+++++|++..+.+++|... +.+.+.+|.
T Consensus 156 d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~ 194 (377)
T PRK02936 156 DIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQ 194 (377)
T ss_pred CHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHH
Confidence 68999999988899999999999998774 655555543
No 273
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=91.92 E-value=0.13 Score=35.71 Aligned_cols=49 Identities=6% Similarity=-0.075 Sum_probs=35.5
Q ss_pred ccCCC-eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHH
Q psy790 3 EAAGG-VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEV 69 (72)
Q Consensus 3 ~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~ 69 (72)
+..|+ +++.++.+. +..+|+++++ . +++|.+++-.|.||..++.++|.+
T Consensus 111 ~~~g~~~v~~~~~~~-------------g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi~~I~~ 160 (378)
T PRK03080 111 KQLKLEDPRVLEADY-------------GSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPVARWIG 160 (378)
T ss_pred hhcCCCCceEeccCC-------------CCCCCHhhcC----C-CCCEEEEecCCccceeccchhhcc
Confidence 45677 788887653 3345666532 2 677999999999999999887754
No 274
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=91.79 E-value=0.32 Score=33.77 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=29.2
Q ss_pred CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
|++.+++.+. .++.+|++..+++++|.+.+ .++|.++|
T Consensus 172 d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~ 216 (401)
T TIGR01885 172 NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELC 216 (401)
T ss_pred CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHH
Confidence 5788888774 45678888888999999997 55666665
No 275
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=91.75 E-value=0.13 Score=35.30 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=34.2
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeC-HHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD-PAELESKFSSRTKLIILNTPHNPLGKVFT 63 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~i~l~~P~NPtG~~~~ 63 (72)
++..|++++.++.+..+ .+. + .+..+..+.+++|+|.+++-.|.||..++
T Consensus 106 a~~~g~~~~~~~~~~~g-----------~~~-~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~ 156 (355)
T cd00611 106 AKRYGGVVVIVAAKEEG-----------KYT-KIPDVETWDLAPDAAYVHYCSNETIHGVEFD 156 (355)
T ss_pred HHhcCCCcEEEeccccc-----------CCC-CCCCHhhcCCCCCCCEEEEeCCcccccEEcc
Confidence 35678888888875421 221 2 22233445678999999999999999854
No 276
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=91.60 E-value=0.38 Score=33.52 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=26.9
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCC-CHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVF-TREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~l~ 71 (72)
|++.+++.+.+++++|+++.++++.|... +.+.+++|.
T Consensus 168 d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~ 206 (397)
T TIGR03246 168 DLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLR 206 (397)
T ss_pred CHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHH
Confidence 78999999887888888885455555443 666666554
No 277
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=90.24 E-value=0.78 Score=32.08 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=47.9
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
++++|..+..||-.... .|.++++...+.+. ..+.+.++++|.--.|.+.+.+.+.++|+
T Consensus 117 AEragl~v~eVp~tg~P-----------ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~ 183 (382)
T COG1103 117 AERAGLNVAEVPNTGYP-----------EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICR 183 (382)
T ss_pred HHhcCCeEEecCCCCCC-----------ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHH
Confidence 56789999999955433 79999887766653 23678999999999999999999998874
No 278
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=90.10 E-value=0.63 Score=34.94 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=43.1
Q ss_pred ccCCC---eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC----C--ccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGG---VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS----R--TKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~--~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..+|+ .++.||++. ++++|+++|++.+.. . +-+|+-+-..-.+|.+=+.++|.+|+
T Consensus 240 ~ilGlG~~~vv~VpvD~-------------~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~ 304 (608)
T TIGR03811 240 DIIGIGLDQVIPVPVDS-------------NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALR 304 (608)
T ss_pred HHcCCCcccEEEeecCC-------------CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHH
Confidence 34565 488899875 788999999988742 2 33466667788999999999998886
No 279
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=90.09 E-value=0.54 Score=32.47 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=24.7
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+++.++. .+++++|+++ ++||+|.+++.++|.+|+
T Consensus 127 ~l~~l~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~ 161 (346)
T TIGR03576 127 ELSELKK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVI 161 (346)
T ss_pred CHHHHhh--CcCceEEEEE-CCCCCCcccCHHHHHHHH
Confidence 3454432 2467888774 579999999888888775
No 280
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=89.87 E-value=0.98 Score=31.87 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=31.9
Q ss_pred CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.+.+|++++++.+. .++|+|++..+. +|...+.++|.++++
T Consensus 152 ~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~ 193 (416)
T PRK13034 152 TGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIAD 193 (416)
T ss_pred cCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHH
Confidence 45689999988874 368888877665 578889999998863
No 281
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=86.98 E-value=0.53 Score=33.87 Aligned_cols=61 Identities=25% Similarity=0.516 Sum_probs=39.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCH-----HHHHhhhc--CCccE---EEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDP-----AELESKFS--SRTKL---IILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~-----~~l~~~~~--~~~~~---i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|+.+++++..... -| -...++. +.+++++. +..|+ +++++|+ -.|.+++.++|.+++.
T Consensus 124 il~ga~Pvyi~p~~~~---~g-----i~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h 194 (417)
T PF01276_consen 124 ILSGAIPVYIPPEDNE---YG-----IIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIKEIAEICH 194 (417)
T ss_dssp HHHTEEEEEEEEEE-T---TS------BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHC
T ss_pred HHcCCeEEEecCCccc---cC-----CccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHHHHHHHhc
Confidence 3468899998765221 00 0223455 88888885 34455 9999984 6799999999998874
No 282
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=86.70 E-value=0.24 Score=35.13 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=4.5
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcccc----CCCHHHHHHHh
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK----VFTREELEVIA 71 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~----~~~~~~l~~l~ 71 (72)
++..|++++.|-.... -.+++++++++++|.+|+..+++|..-. ..+.+++.+++
T Consensus 108 m~~sGa~lvEVGttN~---------------t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la 166 (367)
T PF03841_consen 108 MRQSGARLVEVGTTNR---------------THLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELA 166 (367)
T ss_dssp --------------------------------------------------------------------HHHHHH
T ss_pred cccccccccccccccc---------------cccccccccccccccccccccccccccccccccccHHHHHHHH
Confidence 3456777776665432 2467789999999999999999998533 45778887776
No 283
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=85.94 E-value=1.8 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=27.6
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCC--HHHHHHH
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFT--REELEVI 70 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~--~~~l~~l 70 (72)
|++.+++.+..+..+.++..|.+++|.+++ .+.+.+|
T Consensus 175 d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l 213 (408)
T PRK04612 175 DVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARV 213 (408)
T ss_pred CHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHH
Confidence 678888888666678888999999998876 3344444
No 284
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=85.70 E-value=3.5 Score=31.71 Aligned_cols=65 Identities=9% Similarity=0.156 Sum_probs=42.1
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--Ccc---EEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTK---LIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~---~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...|+.++++...... -|--++...-.++.+.+++++.. +.+ ++++++| +--|.+++.+.+.+++
T Consensus 253 ilsga~PVYl~P~rn~---~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~ 322 (714)
T PRK15400 253 MMSDVTPIYFRPTRNA---YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTL 322 (714)
T ss_pred HHcCCeEEEecccccc---cCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHh
Confidence 4578999998765421 01000001112337888888743 333 7899999 7889999999998876
No 285
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=85.67 E-value=2.1 Score=30.67 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=31.7
Q ss_pred eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+.+.++++++ .+.+|.+++++.+. .++|+|++..-+.| ..++.+++++|++
T Consensus 143 ~~~~y~~d~~------------~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad 194 (399)
T PF00464_consen 143 ESVPYPVDPD------------TGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIAD 194 (399)
T ss_dssp EEEEEEB-TT------------TSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHH
T ss_pred EEEeeeeecC------------CCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHH
Confidence 4566777764 67899999999884 47899887765544 5678888888763
No 286
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=84.70 E-value=2.9 Score=30.30 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=31.5
Q ss_pred CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..+|+++|++.+. .++|+|++ .-++ +|...|.+++.++|+
T Consensus 167 ~g~iD~d~Le~~l~~~~pklIv~-~~S~-~s~~~D~a~i~~ia~ 208 (475)
T PLN03226 167 TGLIDYDKLEKKAMLFRPKLIIA-GASA-YPRDWDYARMRKIAD 208 (475)
T ss_pred CCCcCHHHHHHHHhhcCCeEEEE-ecCc-CCCccCHHHHHHHHH
Confidence 56689999999885 46776655 3444 789999999998874
No 287
>PRK15029 arginine decarboxylase; Provisional
Probab=84.60 E-value=4.3 Score=31.42 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=41.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCcc--------EEEEeCCCCccccCCCHHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTK--------LIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~--------~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...|+.+++++..... -|--.+.....++++.+++++. +.+| ++++++|+ -.|.+++.+.|.++++
T Consensus 263 ~L~ga~Pvyl~P~~~~---~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I~~~~h 338 (755)
T PRK15029 263 ILTGAKPVYMVPSRNR---YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLE 338 (755)
T ss_pred HHcCCeEEEecccccc---cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHHHHHHH
Confidence 4578999999654311 1110000011233788888874 2344 89999984 6799999999988763
No 288
>KOG1360|consensus
Probab=84.51 E-value=1.6 Score=31.99 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=32.8
Q ss_pred CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.|++++. ..+|+|-+.+.+..+|.+.+.|+|..+++
T Consensus 288 D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah 330 (570)
T KOG1360|consen 288 DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH 330 (570)
T ss_pred CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence 6788887774 24799999999999999999999988763
No 289
>PRK13578 ornithine decarboxylase; Provisional
Probab=82.74 E-value=3 Score=32.07 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=40.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeC-----HHHHHhhhcCC----------ccEEEEeCCCCccccCCCHHHH
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD-----PAELESKFSSR----------TKLIILNTPHNPLGKVFTREEL 67 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~~l~~~~~~~----------~~~i~l~~P~NPtG~~~~~~~l 67 (72)
...|+.++++...... -|- -..++ .+.+++++... .|++++++|. -.|.+++.+.|
T Consensus 233 iLsGa~PVYl~P~~n~---~Gi-----~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I 303 (720)
T PRK13578 233 IQAGATPVYLETARNP---FGF-----IGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQV 303 (720)
T ss_pred HHcCCeEEEeeccccc---cCC-----cCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHH
Confidence 4679999999765421 010 11234 34577777433 5889999884 67999999999
Q ss_pred HHHh
Q psy790 68 EVIA 71 (72)
Q Consensus 68 ~~l~ 71 (72)
.+++
T Consensus 304 ~~~~ 307 (720)
T PRK13578 304 VDKI 307 (720)
T ss_pred HHHh
Confidence 8873
No 290
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=81.85 E-value=4.4 Score=29.31 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=30.9
Q ss_pred CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
+..+|.|++++.+. .++|+|+.-.- -.-..++.+++++|++
T Consensus 150 t~~IDyD~~~k~a~e~kPK~ii~G~S--aY~r~id~~~~reIad 191 (413)
T COG0112 150 TGLIDYDEVEKLAKEVKPKLIIAGGS--AYSRPIDFKRFREIAD 191 (413)
T ss_pred cCccCHHHHHHHHHHhCCCEEEECcc--ccccccCHHHHHHHHH
Confidence 68899999999874 57899885433 3456778888888874
No 291
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=81.15 E-value=2.5 Score=30.06 Aligned_cols=37 Identities=32% Similarity=0.349 Sum_probs=31.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEe
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILN 52 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~ 52 (72)
+-+|++...+|+.. +..+|.+.++.+++++||+|.+-
T Consensus 136 ~dfgi~Y~~v~Lt~-------------~gkiD~~~v~~~i~~~tkli~IQ 172 (416)
T COG4100 136 KDFGIKYKAVPLTA-------------DGKIDIQAVKTAISDRTKLIGIQ 172 (416)
T ss_pred HHhCcceeeccccc-------------CCcccHHHHHHhcCccceEEEEE
Confidence 34688889999987 55689999999999999998865
No 292
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=79.56 E-value=11 Score=29.20 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=41.0
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-----CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-----RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...|+.++++...... -|=-++...-.++.+.+++++.. +++++++++| +--|.+++.+++.+++
T Consensus 253 ilsga~PVYl~P~~n~---~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~ 322 (713)
T PRK15399 253 MMSDVVPIWLKPTRNA---LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL 322 (713)
T ss_pred HHcCCeeEEecccccc---cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh
Confidence 4578999998755421 01000000111233888888742 2368999999 7889999999998765
No 293
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=79.20 E-value=4.1 Score=29.54 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=32.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...|++++.++.+..+ ..| .+++.+|++.+|+ -.|.+-+.+++.+++
T Consensus 176 ~~~g~~iv~~~~~~~~-------------~~d--------~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~ 222 (429)
T PF02347_consen 176 APLGIEIVEVPLDEDG-------------TTD--------DDDTAAVMVQNPN-TFGVFEDIKEIADIA 222 (429)
T ss_dssp CHCCEEEEEE-BBTTC-------------SB---------STTEEEEEEESS--TTSB--THHHHHHHH
T ss_pred hhCCeEEEEecccccC-------------Ccc--------ccCeEEEEeecCC-CCceEeeHHHHHHHH
Confidence 4468888888887632 122 5678999999997 679999988888876
No 294
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=79.11 E-value=3.3 Score=29.61 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=36.7
Q ss_pred ceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 31 FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 31 ~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+.+++++++++.++.++++++.+--||+.++...|.+++.
T Consensus 152 ~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH 193 (407)
T COG3844 152 GVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAH 193 (407)
T ss_pred eeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHH
Confidence 345678899999999999999999999999999999988763
No 295
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=78.99 E-value=4.3 Score=28.51 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=26.9
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
.|++++++.+.+++.+|++.......|...+ .++++++|
T Consensus 167 ~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~ 209 (395)
T PRK03715 167 NDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALT 209 (395)
T ss_pred chHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHH
Confidence 3678898888777778777755666676665 55555554
No 296
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=76.73 E-value=7.9 Score=27.92 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=40.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCC-ccccCCCHHHHHHHhC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHN-PLGKVFTREELEVIAK 72 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~N-PtG~~~~~~~l~~l~~ 72 (72)
++..|++++.+..... -+..+++.++.+++.+++-.+-+| +.=..++.+++.+|++
T Consensus 128 ~~~aG~~l~EvG~tn~---------------t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~ia~ 184 (395)
T COG1921 128 IRLAGAKLVEVGTTNR---------------THLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAH 184 (395)
T ss_pred HHHcCCEEEEecccCc---------------CCHHHHHHHhccCCeeEEEEeeccccccccccHHHHHHHHH
Confidence 4567888887765532 357888999999999977666665 4445677888888763
No 297
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=75.49 E-value=1.5 Score=30.42 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=21.5
Q ss_pred hhcCCccEEEEeCCCCccccCC-CHHH
Q psy790 41 KFSSRTKLIILNTPHNPLGKVF-TREE 66 (72)
Q Consensus 41 ~~~~~~~~i~l~~P~NPtG~~~-~~~~ 66 (72)
.+++++++|.+++-.+.||... +.++
T Consensus 137 ~l~~~~~~V~~th~eTstGv~~~~i~~ 163 (360)
T PRK05355 137 QLSDDAAYVHYTSNETIDGTEFHELPD 163 (360)
T ss_pred cCCCCCCEEEEccCCCcceEecCcccc
Confidence 6666899999999999999998 4443
No 298
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=75.41 E-value=1 Score=31.14 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=23.3
Q ss_pred hcCCccEEEEeCCCCccccCCCHHHH
Q psy790 42 FSSRTKLIILNTPHNPLGKVFTREEL 67 (72)
Q Consensus 42 ~~~~~~~i~l~~P~NPtG~~~~~~~l 67 (72)
+.+++|+|.+++-.|.||.+.+.+++
T Consensus 125 ~~~~~~lV~~~h~et~tG~~~pi~~I 150 (361)
T TIGR01366 125 ADPGVDVIAWAHNETSTGVAVPVRRP 150 (361)
T ss_pred cCCCCCEEEEcccCCccceecccccc
Confidence 45689999999999999999998776
No 299
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=73.99 E-value=1.8 Score=30.82 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=9.3
Q ss_pred ccEEEEeCCCCccccC
Q psy790 46 TKLIILNTPHNPLGKV 61 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~ 61 (72)
+-.=++++||||-|.+
T Consensus 138 ~~IElVTSPNNPDG~l 153 (363)
T PF04864_consen 138 PYIELVTSPNNPDGQL 153 (363)
T ss_dssp GEEEEEESS-TTT---
T ss_pred CeEEEEeCCCCCcccc
Confidence 3445789999999986
No 300
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=71.24 E-value=17 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=20.9
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...+++.++|.. ||..++.+.+.+|++
T Consensus 123 ~~pi~iYn~P~~-tg~~l~~~~~~~L~~ 149 (281)
T cd00408 123 DLPVILYNIPGR-TGVDLSPETIARLAE 149 (281)
T ss_pred CCCEEEEECccc-cCCCCCHHHHHHHhc
Confidence 345677777765 899999999999874
No 301
>PLN00144 acetylornithine transaminase
Probab=68.50 E-value=6.7 Score=27.35 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=19.2
Q ss_pred CHHHHHhhhc-CCccEEEEeCCCCccccCCC
Q psy790 34 DPAELESKFS-SRTKLIILNTPHNPLGKVFT 63 (72)
Q Consensus 34 d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~ 63 (72)
|++.+++.+. .++++|++.--+|| |.+++
T Consensus 155 d~~~l~~~~~~~~~aavi~eP~q~~-gg~~~ 184 (382)
T PLN00144 155 NLEAARKLIQKGKTAAVFVEPVQGE-GGIYP 184 (382)
T ss_pred CHHHHHHhcCCCCeEEEEEccccCC-CCCcc
Confidence 6788888874 35666666644888 54444
No 302
>PLN02955 8-amino-7-oxononanoate synthase
Probab=68.28 E-value=14 Score=27.25 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=29.0
Q ss_pred CHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 34 DPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 34 d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
|++.|++.+.. +.++|++..--++.|.+.+.+++.+|++
T Consensus 235 D~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~ 276 (476)
T PLN02955 235 DMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRK 276 (476)
T ss_pred CHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 68888877732 3345555555899999999999999873
No 303
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=67.61 E-value=8.2 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHhhhc-----CCccEEEEeCCCCccccCC-CHHHHHHH
Q psy790 35 PAELESKFS-----SRTKLIILNTPHNPLGKVF-TREELEVI 70 (72)
Q Consensus 35 ~~~l~~~~~-----~~~~~i~l~~P~NPtG~~~-~~~~l~~l 70 (72)
++.+++.+. .++.+|++.--++|+|..+ +.+.+++|
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l 224 (421)
T PRK09792 183 LDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAI 224 (421)
T ss_pred HHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHH
Confidence 467777664 3466777776689999876 75555554
No 304
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=66.57 E-value=9.1 Score=27.39 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=21.9
Q ss_pred HHHHhhhc-----CCccEEEEeCCCCccccCCCHH-HHHHH
Q psy790 36 AELESKFS-----SRTKLIILNTPHNPLGKVFTRE-ELEVI 70 (72)
Q Consensus 36 ~~l~~~~~-----~~~~~i~l~~P~NPtG~~~~~~-~l~~l 70 (72)
+.+++.+. .++++|++.--+||+|.+++.+ .++++
T Consensus 190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l 230 (443)
T PRK08360 190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKL 230 (443)
T ss_pred HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHH
Confidence 44555542 4577777764369999988733 45444
No 305
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=66.54 E-value=5.7 Score=28.54 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=40.3
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCC-HHHHHHHhC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFT-REELEVIAK 72 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~-~~~l~~l~~ 72 (72)
+.+|.+++.||...++ +...-|.+.+++.+. +...+.++++++=-.|...| .+++.+||+
T Consensus 119 ~~AGl~~~vV~~~~~~----------d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~ 182 (389)
T PF05889_consen 119 ERAGLEPVVVENVLEG----------DELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICK 182 (389)
T ss_dssp HHTT-EEEEE-EEEET----------TEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHH
T ss_pred HhcCCeEEEeeccCCC----------CeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHH
Confidence 5678899999865443 145666788887774 34578888999888888888 888888873
No 306
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.55 E-value=19 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.6
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..-+++.++|.. ||..++.+.+++|++
T Consensus 126 ~~pi~lYn~P~~-~g~~ls~~~~~~L~~ 152 (284)
T cd00950 126 DLPVILYNVPGR-TGVNIEPETVLRLAE 152 (284)
T ss_pred CCCEEEEEChhH-hCCCCCHHHHHHHhc
Confidence 345677777644 799999999999874
No 307
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=65.41 E-value=25 Score=23.52 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=20.6
Q ss_pred ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 46 TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+++.++|. .||..++.+.+.+|++
T Consensus 128 ~pv~lYn~P~-~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 128 LPIILYNVPG-RTGVDILPETVARLAE 153 (292)
T ss_pred CCEEEEECcc-ccCCCCCHHHHHHHHc
Confidence 4567777776 6799999999998853
No 308
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=65.02 E-value=22 Score=23.94 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=20.3
Q ss_pred ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 46 TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
..+++.++|. .||..++.+.+.+|++
T Consensus 131 lPv~iYn~P~-~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 131 NPMIVYNIPA-LTGVNLSLDQFNELFT 156 (293)
T ss_pred CCEEEEeCch-hhccCCCHHHHHHHhc
Confidence 4567777774 5899999999999874
No 309
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=64.90 E-value=22 Score=26.77 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=41.5
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCc-cEEEEeCCCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRT-KLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~-~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..|+.++++....... -.--..++.+.+++++. +.. |++++.||. -.|.+++.+++.+.+
T Consensus 129 laGa~Pvyl~p~~np~-------~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~ 191 (557)
T COG1982 129 LAGATPVYLEPSRNPL-------YGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELL 191 (557)
T ss_pred HcCCceEEecCCCCcc-------ccccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHH
Confidence 4688888887654320 00013678889988763 345 888988874 569999999988765
No 310
>PLN02417 dihydrodipicolinate synthase
Probab=64.06 E-value=22 Score=23.86 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=20.5
Q ss_pred cEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 47 KLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 47 ~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.+++.++|. .||..++.+.+.+|++
T Consensus 127 pi~lYn~P~-~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 127 PTIIYNVPG-RTGQDIPPEVIFKIAQ 151 (280)
T ss_pred CEEEEEChh-HhCcCCCHHHHHHHhc
Confidence 677878877 6899999999998864
No 311
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=63.86 E-value=7.5 Score=26.86 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=31.8
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCc--eeCHHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADF--KLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~--~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~ 63 (72)
++..|+ +..+..+... .| .+++++++ +.+++++|.+++-.+.||...+
T Consensus 99 a~~~g~-~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~ 148 (349)
T TIGR01364 99 AKKYGV-VNVVASGKEG-----------NYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR 148 (349)
T ss_pred HHHhCC-cEEEeccccC-----------CCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc
Confidence 456677 6666654321 12 24555444 3467899999999999999875
No 312
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=63.72 E-value=31 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.9
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
...+++.++|.. ||..++.+.+.+|++
T Consensus 128 ~lpv~lYn~P~~-tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 128 GLNMIVYSIPFL-TGVNMGIEQFGELYK 154 (290)
T ss_pred CCCEEEEeCccc-cccCcCHHHHHHHhc
Confidence 356677777754 799999999998864
No 313
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=63.65 E-value=22 Score=23.78 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 46 TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.-+++.++|. .||..++.+.+.+|++
T Consensus 125 ~pi~lYn~P~-~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 125 LPIILYNVPS-RTGVSLYPETVKRLAE 150 (285)
T ss_pred CCEEEEECcH-HhcCCCCHHHHHHHHc
Confidence 3567777664 5799999999998864
No 314
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=60.76 E-value=33 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.3
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
..-+++.++|.. ||..++.+.+.+|+
T Consensus 127 ~lpv~iYn~P~~-tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 127 DFPIIIYNIPGR-AAQEIAPKTMARLR 152 (294)
T ss_pred CCCEEEEeCchh-cCcCCCHHHHHHHH
Confidence 355788888876 89999999999886
No 315
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=59.39 E-value=48 Score=22.22 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=19.9
Q ss_pred ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 46 TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.-+++.++|. .||..++.+.+.+|++
T Consensus 129 lpi~iYn~P~-~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 129 LPMIIYHIPA-LTGVNLTLEQFLELFE 154 (288)
T ss_pred CCEEEEeCcc-ccCCCCCHHHHHHHhc
Confidence 3567777764 5799999999998864
No 316
>PRK05367 glycine dehydrogenase; Provisional
Probab=57.15 E-value=19 Score=28.63 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=30.8
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+..|++++.++... + ++ ..++.++++.+| |-+|.+.+.++|.+++
T Consensus 187 ~~~G~ev~~~~~~~-------------d--~~--------~~~~~~vlvq~p-~~~G~i~d~~~i~~~a 231 (954)
T PRK05367 187 EPLGIEVVVGDAAK-------------A--LD--------HDDVFGVLLQYP-GTSGEVRDYTALIAAA 231 (954)
T ss_pred HhCCCEEEEecCcc-------------C--CC--------cccEEEEEEecC-CCCeeeccHHHHHHHH
Confidence 45788888888643 1 11 224555666676 7899999999988876
No 317
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=55.62 E-value=23 Score=25.34 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=31.5
Q ss_pred eCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 33 LDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 33 ~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.|++.|++.+.+ +.++|+...--...|.+.+.++|.+|++
T Consensus 153 nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ 198 (388)
T COG0156 153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAE 198 (388)
T ss_pred CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHH
Confidence 377888888854 2466777788888999999999998864
No 318
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=55.56 E-value=31 Score=20.60 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=27.8
Q ss_pred ceeCHHHHHhhhcCCccEEEE--eCC---CCccccCCCHHHHHH
Q psy790 31 FKLDPAELESKFSSRTKLIIL--NTP---HNPLGKVFTREELEV 69 (72)
Q Consensus 31 ~~~d~~~l~~~~~~~~~~i~l--~~P---~NPtG~~~~~~~l~~ 69 (72)
..+|+..+.+++......|++ |.| |...|..+..+.+..
T Consensus 38 Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~ 81 (124)
T PF02662_consen 38 GRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVER 81 (124)
T ss_pred CccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHH
Confidence 348899999999877877776 444 557787776655543
No 319
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=54.97 E-value=19 Score=19.99 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=19.0
Q ss_pred cEEEEeCCCCccccCCCHHHHHHHh
Q psy790 47 KLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 47 ~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...++.-|.+|.| -++.++|..++
T Consensus 52 ~~~~lVlP~~P~~-~lse~~L~~va 75 (77)
T TIGR03793 52 TVLYLVLPVNPDI-ELTDEQLDAVA 75 (77)
T ss_pred CeEEEEecCCCCC-CCCHHHHHHhh
Confidence 3445555999999 99999998875
No 320
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=54.85 E-value=41 Score=24.63 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=39.6
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCC--ceeCHHHHHhhhcC----CccEEEEeCC-CCccccCCCHHHHHHH
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSAD--FKLDPAELESKFSS----RTKLIILNTP-HNPLGKVFTREELEVI 70 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~--~~~d~~~l~~~~~~----~~~~i~l~~P-~NPtG~~~~~~~l~~l 70 (72)
+.+|+.++-++.+...+.+ .... ..+|++.|++.+.. ++-.|+++-- |--.|+..|.+.+++.
T Consensus 142 ~~ng~~~~n~~~~ea~d~~-----~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v 211 (471)
T COG3033 142 QINGATPRNVYVDEAFDTE-----VKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAV 211 (471)
T ss_pred HhcCCcccccccccccccc-----ccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHH
Confidence 5678888888876543221 1122 36788999998853 4555665544 4456788887776654
No 321
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=54.55 E-value=12 Score=22.84 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.3
Q ss_pred cCCccEEEEeCCCCccccCC
Q psy790 43 SSRTKLIILNTPHNPLGKVF 62 (72)
Q Consensus 43 ~~~~~~i~l~~P~NPtG~~~ 62 (72)
+.++++.+-|+|+||+...=
T Consensus 15 ~~~t~l~ckc~~~n~s~~sg 34 (150)
T PF06084_consen 15 SENTHLTCKCSPWNPSSNSG 34 (150)
T ss_pred cCCeeEEEecCCCCCcccCC
Confidence 45799999999999987643
No 322
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=51.80 E-value=39 Score=24.27 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=32.2
Q ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeC-CCCccccCCCHHHHHHHh
Q psy790 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNT-PHNPLGKVFTREELEVIA 71 (72)
Q Consensus 4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~-P~NPtG~~~~~~~l~~l~ 71 (72)
..|+++..||.+- +.+++.+ -++..|+|+| |.+|.-...-.+.+++++
T Consensus 199 ~rg~~vtVVP~~t-----------------~~eeIl~---~~pDGiflSNGPGDP~~~~~~i~~ik~l~ 247 (368)
T COG0505 199 KRGCRVTVVPADT-----------------SAEEILA---LNPDGIFLSNGPGDPAPLDYAIETIKELL 247 (368)
T ss_pred HCCCeEEEEcCCC-----------------CHHHHHh---hCCCEEEEeCCCCChhHHHHHHHHHHHHh
Confidence 3577888888764 4555533 3677888875 799976666666666654
No 323
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=51.21 E-value=58 Score=22.22 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=20.2
Q ss_pred ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 46 TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.-+|+++.| +.||..++.+.+.++++
T Consensus 131 lPvilYN~P-~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 131 LPVILYNIP-SRTGVDLSPETIARLAE 156 (299)
T ss_pred CCEEEEeCc-cccCCCCCHHHHHHHhc
Confidence 345666666 58999999999999874
No 324
>PRK06541 hypothetical protein; Provisional
Probab=50.55 E-value=36 Score=24.56 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=23.6
Q ss_pred HHHHhhhc---CCccEEEEeCC-CCccccCCC----HHHHHHHh
Q psy790 36 AELESKFS---SRTKLIILNTP-HNPLGKVFT----REELEVIA 71 (72)
Q Consensus 36 ~~l~~~~~---~~~~~i~l~~P-~NPtG~~~~----~~~l~~l~ 71 (72)
+.+++.+. ++..+.++.-| .++.|.+.+ .++++++|
T Consensus 208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc 251 (460)
T PRK06541 208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREIC 251 (460)
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence 56676664 24455666667 899999887 55555554
No 325
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=49.99 E-value=53 Score=24.21 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=25.9
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLG-KVFTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~l~ 71 (72)
|++.+++.....+-++++-+|+ -+| ...+...+.+++
T Consensus 199 d~~~l~~~~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~ 236 (450)
T COG0403 199 DLDDLESADDGDVFGVLVQYPN-TFGIVEEDLRALIEAA 236 (450)
T ss_pred hhhhhhhccccCeEEEEEecCC-CCCccchhHHHHHHHH
Confidence 5677777733467889999997 677 555577776654
No 326
>KOG2040|consensus
Probab=49.86 E-value=29 Score=27.38 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=32.0
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHN 56 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~N 56 (72)
++++|.+++.|.++. ...+|...|+....+ +-.+++++.|+-
T Consensus 647 A~MagmkvvpV~~~~-------------~G~id~~dLk~kaekh~~~Laa~MvTYPST 691 (1001)
T KOG2040|consen 647 AAMAGMKVVPVGCDA-------------NGNIDMVDLKAKAEKHKDNLAALMVTYPST 691 (1001)
T ss_pred HHhcCCEEEEeeccC-------------CCCccHHHHHHHHHHhhhhhheeEEecccc
Confidence 356899999999886 556898888777643 456789999863
No 327
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=46.84 E-value=28 Score=22.38 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=20.6
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHH
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEV 69 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~ 69 (72)
+-+.|+.+ -+..|+.|||+=|++ .+..+|++
T Consensus 10 t~~ti~dA---Yv~FilyCNP~vP~~--tdT~~Lr~ 40 (175)
T PF09441_consen 10 TDETIDDA---YVAFILYCNPAVPLD--TDTSELRE 40 (175)
T ss_pred Cccchhhh---hheeeeecCCCCCCC--CCHHHHHH
Confidence 33444443 367899999999998 45555554
No 328
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=46.59 E-value=50 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=20.9
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...+++.++|.. ||..++.+.+.+|+
T Consensus 121 ~lpv~iYn~P~~-tg~~l~~~~l~~L~ 146 (279)
T cd00953 121 PYPTFIYNYPKA-TGYDINARMAKEIK 146 (279)
T ss_pred cCCEEEEeCccc-cCCCCCHHHHHHHH
Confidence 456778777754 89999999999987
No 329
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=45.70 E-value=43 Score=23.65 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=24.6
Q ss_pred CHHHHHhhhc---CCccEEEEe-CCCCccccCCC----HHHHHHHh
Q psy790 34 DPAELESKFS---SRTKLIILN-TPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~---~~~~~i~l~-~P~NPtG~~~~----~~~l~~l~ 71 (72)
|++.+++.+. .++.+|++. -++| +|.+.+ .+++.++|
T Consensus 183 d~~~l~~~i~~~~~~~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~ 227 (426)
T PRK00062 183 DLEAVEELFEEYGDEIAAVIVEPVAGN-MGVVPPKPGFLEGLRELC 227 (426)
T ss_pred CHHHHHHHHHhCCCcEEEEEEeCCcCC-CCCcCCCHHHHHHHHHHH
Confidence 6788887774 356677777 4455 788887 45555554
No 330
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=44.16 E-value=47 Score=18.24 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=24.6
Q ss_pred eeCHHHHHhhhcCCccEEEEeCCCCccccC
Q psy790 32 KLDPAELESKFSSRTKLIILNTPHNPLGKV 61 (72)
Q Consensus 32 ~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~ 61 (72)
+...+++++.+.++++++=|+-|+-|.|..
T Consensus 39 HVPa~~I~~lL~e~P~~~GlavPGMP~GSP 68 (70)
T PF04214_consen 39 HVPADDIKRLLAEKPDARGLAVPGMPAGSP 68 (70)
T ss_pred cCCHHHHHHHHhcCCCceEEeCCCCCCCCC
Confidence 456889999998888877788999998863
No 331
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=44.09 E-value=44 Score=24.73 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=26.6
Q ss_pred CceeCHHHHHhhhcC----CccEE---EEeCCCCccccCCCHHHHHHHh
Q psy790 30 DFKLDPAELESKFSS----RTKLI---ILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~----~~~~i---~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
...+|++++++++.+ +.-.+ +.||-+ -|++++.+.++++.
T Consensus 164 kG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~--GGqpvslenlr~V~ 210 (467)
T TIGR02617 164 KGNFDLEGLERGIEEVGPNNVPYIVATITCNSA--GGQPVSLANLKAVY 210 (467)
T ss_pred CCCcCHHHHHHHHhhcCCCCceeeeeeEEEecC--CCEEeCHHHHHHHH
Confidence 457899999999863 22222 223332 48899999998875
No 332
>KOG1496|consensus
Probab=43.96 E-value=24 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHHhhhcCCccEEEEeCCCCccccC
Q psy790 35 PAELESKFSSRTKLIILNTPHNPLGKV 61 (72)
Q Consensus 35 ~~~l~~~~~~~~~~i~l~~P~NPtG~~ 61 (72)
-.+|++..++++|.+++.||.|--..+
T Consensus 113 g~AL~k~A~~~~KVlVVgNPaNTNali 139 (332)
T KOG1496|consen 113 GAALEKYAKPNVKVLVVGNPANTNALI 139 (332)
T ss_pred hHHHHHhcCCCceEEEecCccccchhH
Confidence 466777778899999999998865443
No 333
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=43.63 E-value=57 Score=23.72 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=27.2
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHH
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREE 66 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~ 66 (72)
|+++++++++++|.+|++.--.==.|.+...++
T Consensus 173 Di~al~~ai~~~taAvivEPIQGEgGV~~~~~~ 205 (404)
T COG4992 173 DIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPE 205 (404)
T ss_pred CHHHHHHHhccCeEEEEEecccCCCCCCCCCHH
Confidence 789999999999999998877777777776554
No 334
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=43.29 E-value=34 Score=19.30 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=26.3
Q ss_pred eeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHH
Q psy790 32 KLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVI 70 (72)
Q Consensus 32 ~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l 70 (72)
.++...+.+.+. ..... ++-||.-+.+..++.+.|+.|
T Consensus 86 ~~~~~~l~~~~~~~~~~g-iviNP~~~~~~~l~~~~i~~l 124 (124)
T PF07179_consen 86 VVPFEDLLEMLLNNEGDG-IVINPGTPSGFVLPREEIEAL 124 (124)
T ss_pred cccHHHHHHHhhcCCCcE-EEEECCCCceEEECHHHHhhC
Confidence 456677777664 33434 445788888899999988764
No 335
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=42.51 E-value=16 Score=19.26 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=27.9
Q ss_pred eeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 32 KLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 32 ~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.-++.++.+.+...-.-|+++..+.|.+.+++.++.+++.
T Consensus 10 r~~~~~~l~~v~~~~~pv~It~~g~~~~vli~~~~ye~l~ 49 (75)
T PF02604_consen 10 RNNFSELLDEVEEGEEPVIITKNGKPVAVLISVEDYERLQ 49 (75)
T ss_dssp HHTHHHHHHHHHHCT-EEEEEETTEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCCCCeecccHHHHHHHH
Confidence 3355555555544334478889999999999999887764
No 336
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.47 E-value=1.1e+02 Score=20.87 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=19.7
Q ss_pred ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 46 TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.-++++++| ..||..++.+.+.+|++
T Consensus 136 lPv~iYn~P-~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 136 MAIAIYANP-EAFKFDFPRAAWAELAQ 161 (309)
T ss_pred CcEEEEcCc-hhcCCCCCHHHHHHHhc
Confidence 456776766 45799999999998863
No 337
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=41.18 E-value=17 Score=16.62 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=8.0
Q ss_pred CCCCccccCC
Q psy790 53 TPHNPLGKVF 62 (72)
Q Consensus 53 ~P~NPtG~~~ 62 (72)
++.||+|..+
T Consensus 19 s~~~P~G~~W 28 (32)
T PF06462_consen 19 SPSNPEGTSW 28 (32)
T ss_pred CCCCCCCCCc
Confidence 5889999865
No 338
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=40.97 E-value=65 Score=22.56 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=25.2
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCC-C---HHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVF-T---REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~-~---~~~l~~l~ 71 (72)
|++.+++.+.+++++|++.....-.|... + .++++++|
T Consensus 151 d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc 192 (364)
T PRK04013 151 DVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLT 192 (364)
T ss_pred CHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHH
Confidence 57888888877888888776554445544 4 44555554
No 339
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=40.19 E-value=63 Score=19.97 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=27.4
Q ss_pred eCHHHHHhhhc-CCccEEEEeCCCCccccCCCHH
Q psy790 33 LDPAELESKFS-SRTKLIILNTPHNPLGKVFTRE 65 (72)
Q Consensus 33 ~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~ 65 (72)
.++..+.+.+. .++..|++-.|.|..|...+..
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~ 73 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRA 73 (141)
T ss_pred hhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhH
Confidence 47888888774 4688999999999999998855
No 340
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.92 E-value=33 Score=22.90 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=19.1
Q ss_pred ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790 46 TKLIILNTPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 46 ~~~i~l~~P~NPtG~~~~~~~l~~l~~ 72 (72)
.-+++.++|. .||..++.+.+.+|++
T Consensus 128 ~pi~iYn~P~-~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 128 LPIIIYNNPA-RTGNDLSPETLARLAK 153 (289)
T ss_dssp SEEEEEEBHH-HHSSTSHHHHHHHHHT
T ss_pred CCEEEEECCC-ccccCCCHHHHHHHhc
Confidence 4566666654 4689999999988874
No 341
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=37.61 E-value=47 Score=23.02 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=28.1
Q ss_pred CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHH
Q psy790 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEV 69 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~ 69 (72)
.|.+|+..+- .+++.|.+=++.+|++++|.-.-..-+..
T Consensus 198 RntLDi~aV~-~~kq~THLPVivDpSH~~Grr~lv~pla~ 236 (286)
T COG2876 198 RNTLDISAVP-ILKQETHLPVIVDPSHATGRRDLVEPLAK 236 (286)
T ss_pred cceechHHHH-HHHhhcCCCEEECCCCcccchhhHHHHHH
Confidence 5788887774 34456778888899999998765555443
No 342
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.15 E-value=41 Score=22.10 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=19.6
Q ss_pred CceeCHHH-HHhhhcCCccEEEEeCCCCccccCCC
Q psy790 30 DFKLDPAE-LESKFSSRTKLIILNTPHNPLGKVFT 63 (72)
Q Consensus 30 ~~~~d~~~-l~~~~~~~~~~i~l~~P~NPtG~~~~ 63 (72)
.-.+++.+ ++.++..+...|++++ |+|+|...|
T Consensus 143 ~~~v~pReI~~~Al~~~A~~vIlaH-NHPSG~~~P 176 (218)
T TIGR00608 143 HVPVHPREIFKEALKLSASALILAH-NHPSGEPSP 176 (218)
T ss_pred eEEEcHHHHHHHHHHhhCCeEEEEe-ecCCCCCCC
Confidence 34556644 4566666666666554 567887764
No 343
>PRK00024 hypothetical protein; Reviewed
Probab=34.98 E-value=37 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=19.8
Q ss_pred CceeCHHH-HHhhhcCCccEEEEeCCCCccccCCC
Q psy790 30 DFKLDPAE-LESKFSSRTKLIILNTPHNPLGKVFT 63 (72)
Q Consensus 30 ~~~~d~~~-l~~~~~~~~~~i~l~~P~NPtG~~~~ 63 (72)
.-.+++.. ++.++..+...|++++ |+|+|...+
T Consensus 149 ~~~v~pRei~~~Al~~~A~~iIl~H-NHPSG~~~P 182 (224)
T PRK00024 149 SSIVHPREIVKRALKLNAAALILAH-NHPSGDPEP 182 (224)
T ss_pred eEEEcHHHHHHHHHHhhccceEEEe-cCCCCCCCC
Confidence 33455544 4556666666666554 568888764
No 344
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=34.65 E-value=44 Score=19.73 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=15.3
Q ss_pred CceeCHHHH-HhhhcCCccEEEEeCCCCccccCCCH
Q psy790 30 DFKLDPAEL-ESKFSSRTKLIILNTPHNPLGKVFTR 64 (72)
Q Consensus 30 ~~~~d~~~l-~~~~~~~~~~i~l~~P~NPtG~~~~~ 64 (72)
.-.+++..+ +.++..+...|++.+ |+|+|...+-
T Consensus 48 ~~~v~~R~I~~~al~~~A~~vIl~H-NHPsG~~~PS 82 (123)
T PF04002_consen 48 SAPVDPREIFRRALRLNASSVILAH-NHPSGDPEPS 82 (123)
T ss_dssp GGGCSHHHHHHHHHHTT-SEEEEEE-E-TTS--S--
T ss_pred cccccHHHHHHHHHhhCCceEEEEE-EcCCCCCCCC
Confidence 344566555 455565666555443 4466766654
No 345
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=33.70 E-value=61 Score=15.77 Aligned_cols=37 Identities=8% Similarity=0.220 Sum_probs=25.0
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++.++.+.+...- -|+++.-+-|...+++.++..++.
T Consensus 10 ~~~~~l~~v~~~~-pv~It~~g~~~avlv~~~~y~~l~ 46 (52)
T TIGR01552 10 KLGELLKRVRDGE-PVTITKRGRPVAVLVSAADYDRLQ 46 (52)
T ss_pred HHHHHHHHHHCCC-CEEEEECCcceEEEeeHHHHHHHH
Confidence 3444444443222 677777789999999999988764
No 346
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=33.39 E-value=44 Score=23.80 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=17.6
Q ss_pred CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 45 RTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
....|+..-++.|.|.+|+.++|.++-
T Consensus 25 Gv~giV~al~~~p~g~~W~~e~i~~~k 51 (351)
T PF03786_consen 25 GVTGIVTALHDIPNGEVWDYEEIRALK 51 (351)
T ss_dssp TEEEEEE--SSS-TTS---HHHHHHHH
T ss_pred CCCCeeeCCCCCCCCCCCCHHHHHHHH
Confidence 567888888999999999999998763
No 347
>PRK03906 mannonate dehydratase; Provisional
Probab=33.05 E-value=76 Score=22.74 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=24.5
Q ss_pred HHhhhcCCccEEEEeCCCCccccCCCHHHHHHH
Q psy790 38 LESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70 (72)
Q Consensus 38 l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l 70 (72)
|..........|+..-++-|.|.+|+.++|.++
T Consensus 16 l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i~~~ 48 (385)
T PRK03906 16 LEDIRQPGATGIVTALHDIPVGEVWPVEEILAR 48 (385)
T ss_pred HHHHhcCCCCceeecCCCCCCCCCCCHHHHHHH
Confidence 333333566777777788899999999999875
No 348
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=32.25 E-value=86 Score=18.11 Aligned_cols=27 Identities=11% Similarity=0.365 Sum_probs=18.9
Q ss_pred CCceeCHHHHHhhhcC-CccEEEEeCCC
Q psy790 29 ADFKLDPAELESKFSS-RTKLIILNTPH 55 (72)
Q Consensus 29 ~~~~~d~~~l~~~~~~-~~~~i~l~~P~ 55 (72)
..|.+|+.++.++.+. ..-+++-++|+
T Consensus 43 ~~F~idp~e~~~a~~~~~ivgi~HSHP~ 70 (108)
T cd08073 43 EHFEISPEDYAAAEDEGEIVAVVHSHPD 70 (108)
T ss_pred ceEEeCHHHHHHHhcCCCEEEEEEcCCC
Confidence 4799999888777643 35556766664
No 349
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=31.89 E-value=26 Score=18.62 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=12.2
Q ss_pred EeCCCCccccCCCHHH
Q psy790 51 LNTPHNPLGKVFTREE 66 (72)
Q Consensus 51 l~~P~NPtG~~~~~~~ 66 (72)
|-.|--|||.+.+++.
T Consensus 26 IiTPPTPTg~~lpRDs 41 (62)
T PF15366_consen 26 IITPPTPTGMMLPRDS 41 (62)
T ss_pred EecCCCCCceeccccc
Confidence 3457789999988764
No 350
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=29.99 E-value=50 Score=18.50 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEE
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLI 49 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 49 (72)
+.+|...++.-+..++ ++.++|-+-+..+-|.+
T Consensus 31 ~~FG~~arFhTCSae~--------------m~a~eLv~FL~~rgKfi 63 (78)
T PF10678_consen 31 EKFGEDARFHTCSAEG--------------MTADELVDFLEERGKFI 63 (78)
T ss_pred HHhCCCceEEecCCCC--------------CCHHHHHHHHHHcCCEe
Confidence 4577777877776654 78888888776666654
No 351
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=29.72 E-value=1.2e+02 Score=21.34 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=22.5
Q ss_pred HHHHHhhhc-----CCccEEEEeC-CCCccccCCCHHHHHHHh
Q psy790 35 PAELESKFS-----SRTKLIILNT-PHNPLGKVFTREELEVIA 71 (72)
Q Consensus 35 ~~~l~~~~~-----~~~~~i~l~~-P~NPtG~~~~~~~l~~l~ 71 (72)
++.+++.+. .+..+|++.- .+|+.....+.+.+.+|+
T Consensus 184 ~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~ 226 (425)
T PRK08088 184 IASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLR 226 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHH
Confidence 456777664 2344554442 278866777777777664
No 352
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=29.59 E-value=79 Score=25.45 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=25.1
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
|+++|++.+ ++.++++.+|+ -+|.+.+.+++.+++
T Consensus 185 ~~~~l~~~~--~~~~v~~q~Pn-~~G~ied~~~i~~~~ 219 (939)
T TIGR00461 185 DCSDIKKAV--DVFGCLLQYPA-TDGSILDYKQLIDAL 219 (939)
T ss_pred cHHHHhhcC--CEEEEEEECCC-CCeEEecHHHHHHHH
Confidence 344555544 46778888885 679999988887775
No 353
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=29.17 E-value=1.6e+02 Score=19.59 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
.|.+.+.|+++... -.+.++...+...++++ =.|++++.+++++.+
T Consensus 37 gGi~~IEITl~sp~---------------a~e~I~~l~~~~p~~lI------GAGTVL~~~q~~~a~ 82 (211)
T COG0800 37 GGIPAIEITLRTPA---------------ALEAIRALAKEFPEALI------GAGTVLNPEQARQAI 82 (211)
T ss_pred cCCCeEEEecCCCC---------------HHHHHHHHHHhCcccEE------ccccccCHHHHHHHH
Confidence 47788888887532 23445554444457777 678888888887654
No 354
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=29.13 E-value=83 Score=21.19 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=27.0
Q ss_pred CeEEEeeCCCCCCCCCCCCCCCCCce-eCHHHHHhhhcCCccEEEEeC--------CCCccccCCCHH
Q psy790 7 GVPIYIPLQDTSPAEPGRHKSSADFK-LDPAELESKFSSRTKLIILNT--------PHNPLGKVFTRE 65 (72)
Q Consensus 7 ~~~~~v~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~~i~l~~--------P~NPtG~~~~~~ 65 (72)
..+..+|+..- +| .|. .+.+.+++.....--++=++. |.||.|.+.+.+
T Consensus 152 ~~~~~~piah~----eG------~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IA 209 (261)
T PRK01175 152 KDVFQVPVAHA----EG------RVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIA 209 (261)
T ss_pred CCEEEEeeEcC----Cc------ceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcc
Confidence 44566776542 12 566 676666555444333333433 579999876544
No 355
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=28.99 E-value=53 Score=19.91 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=14.6
Q ss_pred CCccccCCCHHHHHHHh
Q psy790 55 HNPLGKVFTREELEVIA 71 (72)
Q Consensus 55 ~NPtG~~~~~~~l~~l~ 71 (72)
-||.|..|+.+.|..++
T Consensus 74 l~~rG~~yt~~nI~~~L 90 (130)
T PF02639_consen 74 LNPRGKEYTKENIDELL 90 (130)
T ss_pred ECCCCCCCCHHHHHHHH
Confidence 37999999999998775
No 356
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=28.76 E-value=96 Score=22.46 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=25.3
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHH
Q psy790 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l 70 (72)
.+..+++ .....|+..-++-|.|.+|+.++|.++
T Consensus 15 ~l~~irQ---~G~~giV~al~~~p~gevW~~~~i~~~ 48 (394)
T TIGR00695 15 SLEDVRQ---AGATGIVTALHHIPNGEVWEKEEIRKR 48 (394)
T ss_pred hHHHHhh---cCCcceeecCCCCCCCCCCCHHHHHHH
Confidence 4555554 366777766677899999999999875
No 357
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=27.67 E-value=69 Score=20.96 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=21.2
Q ss_pred CceeCHHHHHhhhcCCccE--------EEEeCCCCccccCCCHH
Q psy790 30 DFKLDPAELESKFSSRTKL--------IILNTPHNPLGKVFTRE 65 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~~~--------i~l~~P~NPtG~~~~~~ 65 (72)
.|..+.+.+++....+--+ .....|.||.|.+.+.+
T Consensus 153 ~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iA 196 (238)
T cd01740 153 RFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIA 196 (238)
T ss_pred eeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcce
Confidence 5667777776665432111 12245789999876543
No 358
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=27.46 E-value=1.1e+02 Score=21.89 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=28.0
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHH
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l 70 (72)
.+++.+.++ ..+.|+-.-++=|.|.+|+.++|.++
T Consensus 14 v~l~~irQ~---Gv~gIV~aLh~iP~g~~W~~~~I~~~ 48 (362)
T COG1312 14 VTLEDIRQA---GVKGVVTALHHIPAGEVWPVEEILKR 48 (362)
T ss_pred ccHHHHHHh---CccceeccCCCCCCCCcCcHHHHHHH
Confidence 456666665 57788877899999999999998775
No 359
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=27.12 E-value=51 Score=19.63 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=19.0
Q ss_pred CHHHHHhhhcCCccEEEEeCCCCc-cccCCCHHHHHHHh
Q psy790 34 DPAELESKFSSRTKLIILNTPHNP-LGKVFTREELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~NP-tG~~~~~~~l~~l~ 71 (72)
+.+.|++.+.. +++|.+| .|.-++.+++.++.
T Consensus 25 n~~~L~~~l~~------vsdP~s~~Ygk~Lt~~e~~~~~ 57 (143)
T PF09286_consen 25 NLDALEQYLAE------VSDPGSPNYGKYLTPEEFAALF 57 (143)
T ss_dssp THHHHHHHHHH------HHTTTSTTTT----HHHHHHHH
T ss_pred CHHHHHHHHHh------CcCCCCcccccCCCHHHHHHHH
Confidence 45667666543 5678666 79999999988763
No 360
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=27.11 E-value=82 Score=20.45 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=19.6
Q ss_pred CceeCHHHHHhhhcCCccEEEEeC-------CCCccccCCC
Q psy790 30 DFKLDPAELESKFSSRTKLIILNT-------PHNPLGKVFT 63 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~~~i~l~~-------P~NPtG~~~~ 63 (72)
.|..+.+.+.+.....--++-.++ |.||.|....
T Consensus 145 ~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~ 185 (227)
T TIGR01737 145 RYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGN 185 (227)
T ss_pred CeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHH
Confidence 677787766554433222333444 6799986543
No 361
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.66 E-value=57 Score=20.56 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.2
Q ss_pred CCccccCCCHHHHHHHh
Q psy790 55 HNPLGKVFTREELEVIA 71 (72)
Q Consensus 55 ~NPtG~~~~~~~l~~l~ 71 (72)
-||.|.+|+.+.|...+
T Consensus 89 ~~prGr~y~~~nI~~~L 105 (150)
T COG1671 89 LNPRGRLYTEENIGERL 105 (150)
T ss_pred ECCCCcccCHhHHHHHH
Confidence 38999999999987654
No 362
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=26.39 E-value=1.2e+02 Score=21.51 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeC-CCCccc
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNT-PHNPLG 59 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~-P~NPtG 59 (72)
+..|+.++.+|.+. +++++.+ .+..+|+|++ |.+|.-
T Consensus 196 ~~~G~~v~vvp~~~-----------------~~~~i~~---~~~DGIvLSgGPgdp~~ 233 (360)
T PRK12564 196 AERGCRVTVVPATT-----------------TAEEILA---LNPDGVFLSNGPGDPAA 233 (360)
T ss_pred HHCCCEEEEEeCCC-----------------CHHHHHh---cCCCEEEEeCCCCChHH
Confidence 34577777777542 3444432 2466777764 677753
No 363
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=26.21 E-value=35 Score=17.08 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=11.8
Q ss_pred CccccCCCHHHHHHHh
Q psy790 56 NPLGKVFTREELEVIA 71 (72)
Q Consensus 56 NPtG~~~~~~~l~~l~ 71 (72)
.|+|.++..+.+.+.+
T Consensus 17 ~~~G~v~~~~~i~~~~ 32 (63)
T smart00504 17 LPSGQTYERRAIEKWL 32 (63)
T ss_pred CCCCCEEeHHHHHHHH
Confidence 4778888888777654
No 364
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=26.19 E-value=59 Score=19.13 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=13.8
Q ss_pred hcCCccEEEEeCCCCccc
Q psy790 42 FSSRTKLIILNTPHNPLG 59 (72)
Q Consensus 42 ~~~~~~~i~l~~P~NPtG 59 (72)
+++++|+|+|.+|..|..
T Consensus 56 ~rE~Skvv~i~~~~~~~~ 73 (104)
T PF12098_consen 56 IRERSKVVIIVHPDTPAA 73 (104)
T ss_pred eecccEEEEEEeCCChHH
Confidence 355789999999987743
No 365
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=25.96 E-value=62 Score=18.13 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=22.5
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEE
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLI 49 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 49 (72)
+.+|...++--+..++ +|+++|.+-+..+-|.+
T Consensus 29 ~~FG~~arFhTCSa~~--------------m~a~~Li~FL~~kgKfi 61 (77)
T TIGR03853 29 QKFGEDARFHTCSAEG--------------MTADELLQFLLKKGKFI 61 (77)
T ss_pred HHhCCCceEeeccccc--------------CCHHHHHHHHHHCCCEe
Confidence 4567777777776553 78888888776655544
No 366
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=25.85 E-value=29 Score=16.91 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=7.6
Q ss_pred EEEEeCCCCcc
Q psy790 48 LIILNTPHNPL 58 (72)
Q Consensus 48 ~i~l~~P~NPt 58 (72)
.+=+++|.||.
T Consensus 25 IvDISnPs~P~ 35 (42)
T PF08309_consen 25 IVDISNPSNPV 35 (42)
T ss_pred EEECCCCCCCE
Confidence 34477888885
No 367
>COG2161 StbD Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=25.79 E-value=93 Score=17.32 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=27.7
Q ss_pred eCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHH
Q psy790 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEV 69 (72)
Q Consensus 33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~ 69 (72)
-.+..+...+....+-|++.+.+.|-..+++.++.+.
T Consensus 13 ~~l~~~~~~v~~~~~pv~It~~~~~~avlis~~eye~ 49 (86)
T COG2161 13 QKLNPLKDKVESDHEPVAITNRNKPAAVLISASEYER 49 (86)
T ss_pred HHHHHHHHHhccCCCcEEEecCCCccEEEecHHHHHH
Confidence 3445555555555678999999999999999998873
No 368
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=25.70 E-value=1.5e+02 Score=21.64 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=16.3
Q ss_pred CccEEEEe-CCCCccccCCCHHHHHHH
Q psy790 45 RTKLIILN-TPHNPLGKVFTREELEVI 70 (72)
Q Consensus 45 ~~~~i~l~-~P~NPtG~~~~~~~l~~l 70 (72)
++.+|+|+ -|.+|.-.....+.+.++
T Consensus 281 ~pDGIiLSnGPGDP~~~~~~ie~ik~l 307 (415)
T PLN02771 281 KPDGVLFSNGPGDPSAVPYAVETVKEL 307 (415)
T ss_pred CCCEEEEcCCCCChhHhhHHHHHHHHH
Confidence 56777776 578887555545555544
No 369
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=25.52 E-value=45 Score=23.20 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=27.3
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCcc-EEEE---eCCCCccccC
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTK-LIIL---NTPHNPLGKV 61 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~i~l---~~P~NPtG~~ 61 (72)
++.+|++++.+|-.+. .+.=-.+.+++.....+. ++++ .||.||-...
T Consensus 104 l~a~GAevi~t~~~~g------------~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~ 155 (300)
T COG0031 104 LRALGAEVILTPGAPG------------NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHY 155 (300)
T ss_pred HHHcCCEEEEcCCCCC------------chHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHH
Confidence 4678999999987331 121123444444444433 7765 5777776554
No 370
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=25.19 E-value=1.3e+02 Score=16.60 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=19.1
Q ss_pred CceeCHHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63 (72)
Q Consensus 30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~ 63 (72)
.+..+...++.++..+..+|.+.+- +|+|...+
T Consensus 40 ~~~~~~~~~~~a~~~~~~~v~i~Hs-HP~g~~~P 72 (101)
T cd08059 40 SGSVSAVIDLAALEIGMKVVGLVHS-HPSGSCRP 72 (101)
T ss_pred CCccChHHHHHHhhCCCcEEEEEec-CcCCCCCC
Confidence 5555665566666656566555543 36676664
No 371
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=25.17 E-value=1.3e+02 Score=21.25 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHhhhc------CCccEEEEeCCCCcccc-CCCHHHHHHHh
Q psy790 35 PAELESKFS------SRTKLIILNTPHNPLGK-VFTREELEVIA 71 (72)
Q Consensus 35 ~~~l~~~~~------~~~~~i~l~~P~NPtG~-~~~~~~l~~l~ 71 (72)
++.+++.+. .++.+|++.--.+..|. +.+.+.+++|.
T Consensus 178 ~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~ 221 (412)
T TIGR02407 178 IAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLE 221 (412)
T ss_pred HHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHH
Confidence 566777764 24566776655788888 45666666654
No 372
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=24.90 E-value=69 Score=22.49 Aligned_cols=21 Identities=33% Similarity=0.698 Sum_probs=17.9
Q ss_pred EeCCCCccccCCCHHHHHHHh
Q psy790 51 LNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 51 l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+.||.-|.|-.|+.++.+++.
T Consensus 124 F~nPtKpIGpfY~~eea~~l~ 144 (312)
T COG0549 124 FLNPTKPIGPFYSEEEAEELA 144 (312)
T ss_pred ccCCCCCCCCCcCHHHHHHHH
Confidence 457888899999999998875
No 373
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=23.72 E-value=97 Score=20.94 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEeCCCCccccCCCHHHHHHHh
Q psy790 50 ILNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 50 ~l~~P~NPtG~~~~~~~l~~l~ 71 (72)
++-||.-|+|..+..++|+.++
T Consensus 92 l~LNp~s~~gk~f~p~EI~~LL 113 (246)
T PRK11611 92 LFLNPKLPTGKEFMPREISLLL 113 (246)
T ss_pred EEEcCCCCCCcccCHHHHHHHH
Confidence 4558999999999999998875
No 374
>PRK06932 glycerate dehydrogenase; Provisional
Probab=23.63 E-value=1.5e+02 Score=20.35 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=29.4
Q ss_pred cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcc-ccCCCHHHHHH
Q psy790 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPL-GKVFTREELEV 69 (72)
Q Consensus 2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~ 69 (72)
++.+|+++..+.-.... ........|++.+. +...|+++-|.+|. =.+++.+.+..
T Consensus 166 l~~fg~~V~~~~~~~~~-----------~~~~~~~~l~ell~-~sDiv~l~~Plt~~T~~li~~~~l~~ 222 (314)
T PRK06932 166 AQALGMKVLYAEHKGAS-----------VCREGYTPFEEVLK-QADIVTLHCPLTETTQNLINAETLAL 222 (314)
T ss_pred HhcCCCEEEEECCCccc-----------ccccccCCHHHHHH-hCCEEEEcCCCChHHhcccCHHHHHh
Confidence 45688888877532211 10001123444443 36788888886663 34555555543
No 375
>KOG3710|consensus
Probab=23.50 E-value=51 Score=22.56 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=15.9
Q ss_pred CccEEEEeCCCCccccCC
Q psy790 45 RTKLIILNTPHNPLGKVF 62 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~ 62 (72)
++|+++-|.|.|=||.+.
T Consensus 142 RtkAMVAcYPGNGtgYVr 159 (280)
T KOG3710|consen 142 RTKAMVACYPGNGTGYVR 159 (280)
T ss_pred ceeEEEEEecCCCceeeE
Confidence 689999999999998764
No 376
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=23.37 E-value=1.4e+02 Score=18.36 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=11.0
Q ss_pred ccEEEEeCCCCc-cccCCCHHHHH
Q psy790 46 TKLIILNTPHNP-LGKVFTREELE 68 (72)
Q Consensus 46 ~~~i~l~~P~NP-tG~~~~~~~l~ 68 (72)
...|+++-|.|| |=.+++.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~ 115 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLA 115 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeee
Confidence 456666666555 23444555443
No 377
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=23.17 E-value=48 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=8.9
Q ss_pred EEeCCCCccccCCCHHH
Q psy790 50 ILNTPHNPLGKVFTREE 66 (72)
Q Consensus 50 ~l~~P~NPtG~~~~~~~ 66 (72)
+|-.|.|||+.+.....
T Consensus 139 vILDPAdPtnNV~~~~~ 155 (190)
T PF10421_consen 139 VILDPADPTNNVAGGNR 155 (190)
T ss_dssp EEB-TT-TT-BTT-S-H
T ss_pred ceeCCCCCCCccccCCc
Confidence 35579999999886554
No 378
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=22.60 E-value=2e+02 Score=20.43 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=24.1
Q ss_pred CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790 34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA 71 (72)
Q Consensus 34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~ 71 (72)
|++.+++.+. .++.+|++.--..-.|.+.+ .++++++|
T Consensus 186 d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc 230 (428)
T PRK12389 186 DIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELA 230 (428)
T ss_pred CHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHH
Confidence 5788877774 34556666644555687776 55666655
No 379
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=22.35 E-value=94 Score=19.97 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=11.0
Q ss_pred ccCCCeEEEeeCCC
Q psy790 3 EAAGGVPIYIPLQD 16 (72)
Q Consensus 3 ~~~g~~~~~v~~~~ 16 (72)
+..|+.++.+|+-.
T Consensus 20 ~~~G~~~~~~P~i~ 33 (240)
T PRK09189 20 RAMGHEPVLLPLSR 33 (240)
T ss_pred HHCCCceEEecccc
Confidence 55789999998764
No 380
>PF11409 SARA: Smad anchor for receptor activation (SARA); InterPro: IPR024608 Smad proteins mediate transforming growth factor-beta (TGF-beta) signaling from the transmembrane serine-threonine receptor kinases to the nucleus. SARA (Smad anchor for receptor activation) recruits Smad2 to the TGF-beta receptors for phosphorylation []. This entry represents the Smad-binding domain (SBD) of SARA. This domain consists of a rigid coil, an alpha helix, and a beta strand, and interacts with Smad2 [].; PDB: 1DEV_D 1MK2_B.
Probab=22.22 E-value=57 Score=15.84 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.2
Q ss_pred eCCCCccccCCCH
Q psy790 52 NTPHNPLGKVFTR 64 (72)
Q Consensus 52 ~~P~NPtG~~~~~ 64 (72)
-||+||.-.+-+.
T Consensus 4 PnPnnPmEYCSti 16 (39)
T PF11409_consen 4 PNPNNPMEYCSTI 16 (39)
T ss_dssp --TT-GGGT-B-S
T ss_pred CCCCCcchhhccC
Confidence 3788887554433
No 381
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.09 E-value=2.6e+02 Score=18.77 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=27.4
Q ss_pred HHHHHhhhcCCccEEEEeCCCCcc--ccCCCHHHHHHHh
Q psy790 35 PAELESKFSSRTKLIILNTPHNPL--GKVFTREELEVIA 71 (72)
Q Consensus 35 ~~~l~~~~~~~~~~i~l~~P~NPt--G~~~~~~~l~~l~ 71 (72)
.++++.+..-...+|++.-|.=|. ..+.+.+++.+.+
T Consensus 213 ~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~~~l 251 (256)
T TIGR00715 213 LEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLNQFV 251 (256)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHHHHH
Confidence 577777777789999999997554 4556878776654
No 382
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=21.67 E-value=85 Score=21.95 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=17.3
Q ss_pred EeCCCCccccCCCHHHHHHHh
Q psy790 51 LNTPHNPLGKVFTREELEVIA 71 (72)
Q Consensus 51 l~~P~NPtG~~~~~~~l~~l~ 71 (72)
+.||.=|-|-.|+.++.+++.
T Consensus 125 f~~PtKpiG~~y~~~~a~~~~ 145 (313)
T PRK12454 125 FQNPTKPVGPFYDEEEAKKLA 145 (313)
T ss_pred ccCCCCCcCCCcCHHHHHHHH
Confidence 356888899999999988765
No 383
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=21.57 E-value=1.1e+02 Score=20.67 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCCeEEEeeCCCCCCCCCCCCCCCCCcee-CHHHHHhhhcCCccEEEEeC---------CCCccccCCC
Q psy790 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKL-DPAELESKFSSRTKLIILNT---------PHNPLGKVFT 63 (72)
Q Consensus 5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~~~~~i~l~~---------P~NPtG~~~~ 63 (72)
.+.+...+|+... + +.|.. +.+.+++.....--++-++. |.||.|.+.+
T Consensus 150 ~~~~~~~lPiahg----e------G~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~ 208 (259)
T PF13507_consen 150 RGLEGIVLPIAHG----E------GRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNN 208 (259)
T ss_dssp TTTTCEEEEEEES----S-------EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGG
T ss_pred CCCCEEEEEEecC----c------ceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccc
Confidence 3455666665431 1 36777 66666555543323333444 5699997554
No 384
>KOG4132|consensus
Probab=21.50 E-value=1e+02 Score=21.02 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=25.4
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTP 54 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P 54 (72)
+..|..+++||+-.. -..++++|.+.+.. +--.|++++|
T Consensus 24 ~~~~~epifIP~l~f-------------~f~~l~~lr~kL~~p~kY~giIfTSp 64 (260)
T KOG4132|consen 24 RSYGLEPIFIPVLSF-------------TFVNLQQLRAKLNNPPKYAGIIFTSP 64 (260)
T ss_pred HhcCCCceeecceee-------------eeccHHHHHHHhcCchhhceeEEeCh
Confidence 557888899998752 23468888877642 2334666665
No 385
>KOG0629|consensus
Probab=21.24 E-value=2.9e+02 Score=20.78 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=35.0
Q ss_pred CeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-Ccc----EEEEe-CCCCccccCCCHHHHHHHhC
Q psy790 7 GVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTK----LIILN-TPHNPLGKVFTREELEVIAK 72 (72)
Q Consensus 7 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~----~i~l~-~P~NPtG~~~~~~~l~~l~~ 72 (72)
-.++.|+.+. ...+.+++|++.+.. +.+ .++-+ .-.-..|..=+.+.+..+|+
T Consensus 222 d~c~~v~t~e-------------~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~ 280 (510)
T KOG0629|consen 222 DHCIKVKTDE-------------RGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICE 280 (510)
T ss_pred ceeEEecccc-------------cCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHH
Confidence 3466677665 566889999998732 222 33322 33677788888888888764
No 386
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.23 E-value=1.5e+02 Score=16.54 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=21.2
Q ss_pred ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCC
Q psy790 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTP 54 (72)
Q Consensus 3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P 54 (72)
+..|.++..++... +.+++.+.+ ..++++|.++..
T Consensus 25 ~~~G~~v~~~d~~~-----------------~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 25 RKAGHEVDILDANV-----------------PPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHTTBEEEEEESSB------------------HHHHHHHHHHTTCSEEEEEES
T ss_pred HHCCCeEEEECCCC-----------------CHHHHHHHHhcCCCcEEEEEcc
Confidence 44577777776653 336665554 456778777654
No 387
>PF05181 XPA_C: XPA protein C-terminus; InterPro: IPR022656 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry describes the uncharacterised C-terminal in the XPA protein; PDB: 1D4U_A 1XPA_A.
Probab=21.10 E-value=40 Score=17.50 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=6.5
Q ss_pred cEEEEeCCCCccc
Q psy790 47 KLIILNTPHNPLG 59 (72)
Q Consensus 47 ~~i~l~~P~NPtG 59 (72)
+.|.=-||||++-
T Consensus 29 ~~i~k~NPH~~~w 41 (52)
T PF05181_consen 29 PFIEKPNPHNSTW 41 (52)
T ss_dssp -EEESS-SSSS-T
T ss_pred cccccCCCCCCCc
Confidence 3445558999863
No 388
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.06 E-value=1.2e+02 Score=18.51 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=20.9
Q ss_pred HHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHH
Q psy790 35 PAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70 (72)
Q Consensus 35 ~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l 70 (72)
+|.+...+...-.+|- |.|.+++...+-++
T Consensus 28 ldal~arfaedftMit------P~GviLD~~Alg~~ 57 (130)
T COG4460 28 LDALRARFAEDFTMIT------PSGVILDRDALGDH 57 (130)
T ss_pred HHHHHHHHhcCceEec------CCceEeccHHHHHH
Confidence 5666655665656665 88999988887654
No 389
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=20.84 E-value=2.2e+02 Score=20.69 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=24.1
Q ss_pred HHHHhhhcCCccEEEEeCCCCcccc---CCCHHHHHH
Q psy790 36 AELESKFSSRTKLIILNTPHNPLGK---VFTREELEV 69 (72)
Q Consensus 36 ~~l~~~~~~~~~~i~l~~P~NPtG~---~~~~~~l~~ 69 (72)
..++..+....|.|+++|-..|.|. -++.+.+.+
T Consensus 37 pTI~~l~~~gakvvl~SHlGRP~g~~~~~~SL~~va~ 73 (397)
T cd00318 37 PTIKYLLEQGAKVVLLSHLGRPKGEPNEKYSLAPVAK 73 (397)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCCCCCCCCCHHHHHH
Confidence 4445555667899999999999885 466665544
No 390
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=20.70 E-value=1.1e+02 Score=20.93 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=27.7
Q ss_pred ceeCHHHHHhhhcCCccEEEEeCCCCccccCCCH
Q psy790 31 FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64 (72)
Q Consensus 31 ~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~ 64 (72)
-.++...|......++.++++..=++|.|..++.
T Consensus 44 ~~lst~~l~~l~~~~I~v~f~~~~g~~~g~~~p~ 77 (323)
T TIGR00287 44 VSISSAAIRELAKRGIDIVFLGGDGNYLGRLSPQ 77 (323)
T ss_pred CCcCHHHHHHHHHCCCeEEEECCCCcEEEEEecC
Confidence 4577788888888888888888889999987763
No 391
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.15 E-value=2.4e+02 Score=17.68 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=13.6
Q ss_pred CHHHHHhhhcCCccEEEEeCCCC
Q psy790 34 DPAELESKFSSRTKLIILNTPHN 56 (72)
Q Consensus 34 d~~~l~~~~~~~~~~i~l~~P~N 56 (72)
|.+.|.++++ ....++++.+..
T Consensus 54 ~~~~l~~al~-g~d~v~~~~~~~ 75 (233)
T PF05368_consen 54 DPESLVAALK-GVDAVFSVTPPS 75 (233)
T ss_dssp -HHHHHHHHT-TCSEEEEESSCS
T ss_pred CHHHHHHHHc-CCceEEeecCcc
Confidence 5778888886 455566665533
No 392
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=20.13 E-value=54 Score=22.09 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=15.2
Q ss_pred CCccccCCCHHHHHHHh
Q psy790 55 HNPLGKVFTREELEVIA 71 (72)
Q Consensus 55 ~NPtG~~~~~~~l~~l~ 71 (72)
.||.|.+++...|..++
T Consensus 30 ~np~G~ly~p~si~q~l 46 (251)
T PF08885_consen 30 SNPFGNLYNPRSILQLL 46 (251)
T ss_pred cccceeEEcHHHHHHHH
Confidence 99999999999988765
No 393
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=20.13 E-value=2.4e+02 Score=19.81 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=25.7
Q ss_pred CHHHHHhhhc-CCccEEEEeCCC-----CccccCCCHHHHHHH
Q psy790 34 DPAELESKFS-SRTKLIILNTPH-----NPLGKVFTREELEVI 70 (72)
Q Consensus 34 d~~~l~~~~~-~~~~~i~l~~P~-----NPtG~~~~~~~l~~l 70 (72)
|+..+...+. ...|.|-++-|. -|.+..++.++...+
T Consensus 50 DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~ 92 (297)
T PF06342_consen 50 DFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNF 92 (297)
T ss_pred chhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHH
Confidence 6666666663 478999999995 366667776666544
No 394
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=20.06 E-value=80 Score=20.73 Aligned_cols=19 Identities=16% Similarity=0.604 Sum_probs=15.0
Q ss_pred CccEEEEeCCCCccccCCC
Q psy790 45 RTKLIILNTPHNPLGKVFT 63 (72)
Q Consensus 45 ~~~~i~l~~P~NPtG~~~~ 63 (72)
+...+++.||++|-|-++.
T Consensus 79 ~l~fVl~gnP~rp~GG~~~ 97 (225)
T PF08237_consen 79 DLSFVLIGNPRRPNGGILA 97 (225)
T ss_pred ceEEEEecCCCCCCCcchh
Confidence 4578999999999876643
Done!