RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy790
(72 letters)
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 71.7 bits (177), Expect = 1e-16
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
AGGVP+++P FKL +LE+ + +TK +ILN+P NP G V++
Sbjct: 134 LAGGVPVFVPT-----------GEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYS 182
Query: 64 REELEVIAK 72
EELE IA
Sbjct: 183 PEELEAIAD 191
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 71.5 bits (176), Expect = 1e-16
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+ AGG P+ +PL + FK D +LE+ + +TK IILN+P+NP G V+
Sbjct: 131 KLAGGKPVPVPLDEEE----------NGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVY 180
Query: 63 TREELEVIAK 72
++EEL+ I +
Sbjct: 181 SKEELKAIVE 190
>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional.
Length = 387
Score = 68.1 bits (167), Expect = 2e-15
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 12/67 (17%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AGGVP + L EP ++L A L + FS RTK ++LN P NP GKVF R
Sbjct: 131 AGGVPRLVRL------EP------PHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPR 178
Query: 65 EELEVIA 71
EEL ++A
Sbjct: 179 EELALLA 185
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 66.6 bits (163), Expect = 6e-15
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AG + +PL GR F LD L + + RT+ +I+N+PHNP G V T
Sbjct: 129 AGAHRVPVPLV-----PDGRG-----FALDLDALRAAVTPRTRALIVNSPHNPTGTVLTA 178
Query: 65 EELEVIA 71
EL IA
Sbjct: 179 AELAAIA 185
>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional.
Length = 413
Score = 60.6 bits (147), Expect = 8e-13
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
DF + EL++ F+S+T+ I++NTPHNP GK+FTREELE+IA
Sbjct: 172 DFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIA 213
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 60.4 bits (147), Expect = 1e-12
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
AG + +PL + F LD LE+ + +TKL+ LN P+NP G V
Sbjct: 101 RLAGAEVVPVPLDE-----------EGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVL 149
Query: 63 TREELEVIAK 72
+ EELE +A+
Sbjct: 150 SEEELEELAE 159
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 58.0 bits (141), Expect = 8e-12
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
E AGG + + LQ P DF++D + S RT+LIILNTPHNP G V+
Sbjct: 133 ELAGGRAVRVALQ------PP------DFRVDWQRFAAAISPRTRLIILNTPHNPSGTVW 180
Query: 63 TREELEVIA 71
+ ++ +
Sbjct: 181 SAADMRALW 189
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 57.4 bits (139), Expect = 1e-11
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 11/68 (16%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AGGVP+ + T+ +FK+ PA++E+ +++TK I+L +P+NP G V +
Sbjct: 125 AGGVPVPV---ATTLEN--------EFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNK 173
Query: 65 EELEVIAK 72
ELE IA
Sbjct: 174 SELEEIAV 181
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 57.1 bits (139), Expect = 1e-11
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+ GG + +P DT F+ D LE+ + +TK +I+N+P+NP G V+
Sbjct: 138 DNHGGKLVVVPT-DTD-----------TFQPDLDALEAAITPKTKAVIINSPNNPTGVVY 185
Query: 63 TREELEVIAK 72
+ E L+ +A
Sbjct: 186 SEETLKALAA 195
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 56.7 bits (137), Expect = 2e-11
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 11/70 (15%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
E GG PI + T + F+++ +LE+ +S+TK IILN+P+NP G VF
Sbjct: 131 EMVGGKPIILE---TYEED--------GFQINVKKLEALITSKTKAIILNSPNNPTGAVF 179
Query: 63 TREELEVIAK 72
++E LE IAK
Sbjct: 180 SKETLEEIAK 189
>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase. Members of this
subfamily are probable C-S lyases from a family of
pyridoxal phosphate-dependent enzymes that tend to be
(mis)annotated as probable aminotransferases. One member
is PatB of Bacillus subtilis, a proven C-S-lyase.
Another is the virulence factor cystalysin from
Treponema denticola, whose hemolysin activity may stem
from H2S production. Members of the seed alignment occur
next to examples of the enzyme 5-histidylcysteine
sulfoxide synthase, from ovothiol A biosynthesis, and
would be expected to perform a C-S cleavage of
5-histidylcysteine sulfoxide to leave
1-methyl-4-mercaptohistidine (ovothiol A).
Length = 384
Score = 53.5 bits (129), Expect = 3e-10
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 9 PIYIPLQDTSPAEPGRHKSSADFKLDP-------AELESKFSSRTKLIILNTPHNPLGKV 61
P+Y P ++ GR KLDP +LE + + +L++L +PHNP+G+V
Sbjct: 115 PVYPPFL-SAVKSNGRELVLNPLKLDPGRYRFDLEDLEDAITEKARLLLLCSPHNPVGRV 173
Query: 62 FTREELEVIA 71
+TREEL +A
Sbjct: 174 WTREELTRLA 183
>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
Length = 402
Score = 52.8 bits (127), Expect = 5e-10
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
M A G P+ + P E G FKL P LE+ + RT+ +ILN P NP G
Sbjct: 133 MVLANDGTPVIVA----CPEEQG-------FKLTPEALEAAITPRTRWLILNAPSNPTGA 181
Query: 61 VFTREELEVIAK 72
V++R EL +A
Sbjct: 182 VYSRAELRALAD 193
>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
Length = 382
Score = 51.9 bits (125), Expect = 1e-09
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+ G + +PL G + LD L + + RT+ + +N+P+NP G
Sbjct: 126 KILGARVVCVPLD------FGGGG----WTLDLDRLLAAITPRTRALFINSPNNPTGWTA 175
Query: 63 TREELEVI 70
+R++L I
Sbjct: 176 SRDDLRAI 183
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 51.9 bits (125), Expect = 1e-09
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT---KLIILNTPHNPLG 59
AGG + PL SS DF LD LE+ T K+++ +PHNP G
Sbjct: 108 RLAGGEVVRYPL-----------YSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTG 156
Query: 60 KVFTREELEVIAK 72
V T EELE +
Sbjct: 157 TVATLEELEKLLD 169
>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with
beta-cystathionase and maltose regulon repressor
activities [Amino acid transport and metabolism].
Length = 388
Score = 50.7 bits (122), Expect = 2e-09
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 31 FKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIA 71
+++D LE F R KL IL PHNP G+V+T+EEL IA
Sbjct: 143 YEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIA 184
>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
Length = 384
Score = 48.2 bits (115), Expect = 2e-08
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTRE 65
G P+ I L S DF+++ E+ + + RT++II+NTPHNP VF+
Sbjct: 135 GATPVAIKL------------SPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAA 182
Query: 66 ELEVIA 71
+L +A
Sbjct: 183 DLARLA 188
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 46.0 bits (110), Expect = 1e-07
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 14/65 (21%)
Query: 8 VPIYIPLQDTSPAEPGRHKSSADFKLDP-AELESKFSSRTKLIILNTPHNPLGKVFTREE 66
VP+ T+ E G F L E+E + +TK I+++ P NP G V+T+EE
Sbjct: 137 VPV------TTKIEEG-------FHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEE 183
Query: 67 LEVIA 71
LE++A
Sbjct: 184 LEMLA 188
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 45.4 bits (108), Expect = 3e-07
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+ AG + +PL +F+LD + + +TKL+ L P+NP G +
Sbjct: 117 QLAGAEVVKVPL--------------KEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLL 162
Query: 63 TREELEVIAK 72
REEL + +
Sbjct: 163 PREELRALLE 172
>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase. Members of this
family are the enzyme capreomycidine synthase, which
performs the second of two steps in the biosynthesis of
2S,3R-capreomycidine from arginine. Capreomycidine is an
unusual amino acid used by non-ribosomal peptide
synthases (NRPS) to make the tuberactinomycin class of
peptide antibiotic. The best characterized member is
VioD from the biosynthetic pathway for viomycin
[Cellular processes, Biosynthesis of natural products].
Length = 359
Score = 44.8 bits (106), Expect = 4e-07
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
F+ D L + + RT+ +++N PHNP G T EL+ +
Sbjct: 127 GFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDEL 167
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 44.2 bits (105), Expect = 5e-07
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D +LD ++ + KL+ L +P+NP G + +R ++E + +
Sbjct: 126 EDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLE 169
>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 43.3 bits (102), Expect = 1e-06
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
A PI IPL++ + +F+ DP EL + RT++I++N P+NP G +
Sbjct: 137 AEAKPIRIPLREEN-----------EFQPDPDELLELITKRTRMIVINYPNNPTGATLDK 185
Query: 65 EELEVIA 71
E + IA
Sbjct: 186 EVAKAIA 192
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 43.3 bits (103), Expect = 1e-06
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 28 SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
A + D ++ SK + RTK I++ P+NP G V+++E LE I
Sbjct: 151 EAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIV 194
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 42.8 bits (101), Expect = 2e-06
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ G I +P+ ++KL P ++ T+LI L P NPLG
Sbjct: 123 FASRFGAEVIEVPIYS----------EECNYKLTPELVKENMDENTRLIYLIDPLNPLGS 172
Query: 61 VFTREELEVIA 71
+T EE++ A
Sbjct: 173 SYTEEEIKEFA 183
>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 42.2 bits (100), Expect = 3e-06
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 20 AEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
A+P K DF LD + + + +TK+I L TP+NP G + E++ I +
Sbjct: 133 AKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILE 185
>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 42.4 bits (100), Expect = 3e-06
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
G P++I DT S F+L LE+ + +T+ ++L P NP G ++
Sbjct: 133 CGAKPVFI---DTR---------STGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSK 180
Query: 65 EELEVIA 71
EEL+ IA
Sbjct: 181 EELQDIA 187
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 41.7 bits (98), Expect = 5e-06
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
+++D +LES +T +++N P NP G VF+R+ LE I
Sbjct: 153 SWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEI 193
>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase;
Validated.
Length = 391
Score = 40.5 bits (95), Expect = 1e-05
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 9 PIYIPLQDTSPAEPGRHKSSA-DFKLDPAELESKFSSR---TKLIILNTPHNPLGKVFTR 64
P Y P+ + AE ++ DF L P LE + K +ILN P NP G ++R
Sbjct: 126 PGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSR 185
Query: 65 EELEVIA 71
E+++ +A
Sbjct: 186 EQIKALA 192
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 39.2 bits (92), Expect = 4e-05
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 26 KSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
K + D EL TKLI +N +NP G + R LE I +
Sbjct: 134 KEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVE 180
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 38.9 bits (91), Expect = 5e-05
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
D+++D LES +T I++ P NP G VF+R+ L+ IA
Sbjct: 154 DWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIA 195
>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 37.4 bits (87), Expect = 1e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
D ++ SK +SRTK I++ P+NP G ++ RE L+ I
Sbjct: 270 DIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQI 306
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 37.3 bits (87), Expect = 2e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 28 SADFKLDPAELESKFS------SRTKLIILNTPHNPLGKVFTREELEVIAK 72
AD KL P ++E+ + T L +L G V+ +ELE I+
Sbjct: 107 GADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISA 157
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 37.1 bits (86), Expect = 2e-04
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 9 PIYIPLQDTSPAEPGRHKS--SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREE 66
P Y L P +++ ++ D ++ K + +TK I + P+NP G ++ ++
Sbjct: 128 PPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKT 187
Query: 67 LEVI 70
L+ I
Sbjct: 188 LKEI 191
>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
Length = 388
Score = 37.0 bits (86), Expect = 2e-04
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
AA G P+ +P + PAE F+L A++E+ + RT+ ++L +P NP G
Sbjct: 133 AAEGRPVLVP---SGPAE--------RFQLTAADVEAAWGERTRGVLLASPSNPTGTSIA 181
Query: 64 REELEVI 70
+EL I
Sbjct: 182 PDELRRI 188
>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
Length = 352
Score = 36.1 bits (84), Expect = 4e-04
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AG P+ +PL + D D + + + RT+LI + P+NP G V T
Sbjct: 118 AGATPVQVPL-------------TPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTP 164
Query: 65 EELE 68
EL
Sbjct: 165 AELA 168
>gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated.
Length = 360
Score = 35.8 bits (83), Expect = 6e-04
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
A G +PL P + + + P +L + ++LN PHNP GK+++
Sbjct: 116 AFGATVKELPL----PLDQPSPGLTLRLQTLPPQL-----TPNDGLLLNNPHNPTGKLWS 166
Query: 64 REEL 67
RE +
Sbjct: 167 REAI 170
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 35.5 bits (82), Expect = 7e-04
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 28 SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
D++ D E+ RTK +I+ P NP G F+R+ +E I
Sbjct: 160 EKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDI 202
>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
Length = 405
Score = 35.1 bits (81), Expect = 0.001
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
LD +LE F + ++ + + P+NP G V++ EE+ IA
Sbjct: 166 LDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIA 204
>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 34.4 bits (80), Expect = 0.002
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
A G P+ +P + D+ D + + + RT+L+ + P+NP G
Sbjct: 127 AVGAKPVEVP--------------AKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLP 172
Query: 64 REELE 68
EE+E
Sbjct: 173 AEEVE 177
>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This
family of succinyldiaminopimelate transaminases (DapC)
includes the experimentally characterized enzyme from
Bordatella pertussis. The majority of genes in this
family are proximal to genes encoding components of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125).
Length = 393
Score = 33.9 bits (78), Expect = 0.003
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AG P ++ AE G F D + R +L+ + +P NP G V +
Sbjct: 136 AGAEPYFLN----CTAENG-------FLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSL 184
Query: 65 EELE 68
+ L+
Sbjct: 185 DTLK 188
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 33.1 bits (76), Expect = 0.005
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 26 KSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
K + + P ++ + TKLI+++ N G + EE+ +A+
Sbjct: 118 KCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQ 164
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 33.0 bits (76), Expect = 0.005
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKV 61
D LE+ TK + L TP NPL KV
Sbjct: 126 DLDALEAAIKPNTKAVFLETPTNPLLKV 153
>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
Reviewed.
Length = 364
Score = 32.2 bits (74), Expect = 0.009
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREEL 67
EL + R LI LN+P NP G+V + L
Sbjct: 140 SLTELGPQ---RPALIWLNSPSNPTGRVLGVDHL 170
>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
Provisional.
Length = 380
Score = 32.4 bits (74), Expect = 0.009
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 28 SADFKLD-PAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
+ DF LD P +E+ + + KL+ L +P+NP G + + ++L I
Sbjct: 157 TPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKIL 201
>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase.
Length = 468
Score = 32.4 bits (74), Expect = 0.010
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 26 KSSADFKLDPAELES------KFSSRTKLIILNTPHNPLGKVFTREELEVI 70
SS F++ + LE K + + K +++ P NPLG TR EL ++
Sbjct: 166 SSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLL 216
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 32.4 bits (74), Expect = 0.010
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+E + TK I + TP NPL + + IAK
Sbjct: 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAK 163
>gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase;
Provisional.
Length = 356
Score = 32.2 bits (74), Expect = 0.011
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 29 ADFKLD-PAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
ADF LD PA L + R L+ L P+NP G +F ++E I
Sbjct: 136 ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERI 178
>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase;
Provisional.
Length = 396
Score = 32.2 bits (74), Expect = 0.011
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AG P ++ +P + F D + ++ +RT+L+ + +P NP G V
Sbjct: 137 AGAEPYFLN------CDPANN-----FAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPL 185
Query: 65 EELE 68
++ +
Sbjct: 186 DDWK 189
>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 32.0 bits (73), Expect = 0.012
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 13/66 (19%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AG PI +P D ++L P +E + +T+ I+ +P+NP G V+
Sbjct: 133 AGCQPILVPTDDN-------------YQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPE 179
Query: 65 EELEVI 70
L +
Sbjct: 180 ALLRAV 185
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 31.8 bits (73), Expect = 0.013
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
DP LE+ TKL+ + +P NP KV E + +A
Sbjct: 114 DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAH 152
>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase. The four
sequences which make up the seed for this model are not
closely related, although they are all members of the
pfam00155 family of aminotransferases and are more
closely related to each other than to anything else.
Additionally, all of them are found in the vicinity of
genes involved in the biosynthesis of lysine via the
diaminopimelate pathway (GenProp0125), although this
amount to a separation of 12 genes in the case of
Sulfurihydrogenibium azorense Az-Fu1. None of these
genomes contain another strong candidate for this role
in the pathway. Note: the detailed information included
in the EC:2.6.1.17 record includes the assertions that
the enzyme uses the pyridoxal pyrophosphate cofactor,
which is consistent with the pfam00155 family, and the
assertion that the amino group donor is L-glutamate,
which is undetermined for the sequences in this clade.
Length = 350
Score = 31.8 bits (72), Expect = 0.013
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AGG P + L+ E G F L ++E TK++ +N PHNP G R
Sbjct: 107 AGGEPTAVKLK----KEDG-------FLLRLEKVEKSILEETKIVWINYPHNPTGATAPR 155
Query: 65 EELE 68
L+
Sbjct: 156 SYLK 159
>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase;
Provisional.
Length = 357
Score = 32.0 bits (73), Expect = 0.014
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 47 KLIILNTPHNPLGKVFTREELEVIA 71
+++ L +PHNP G +E+E +A
Sbjct: 156 RIVYLTSPHNPTGSEIPLDEVEALA 180
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 31.6 bits (72), Expect = 0.015
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
++L PA +E +++ T ++ +P NP G + +R+EL +++
Sbjct: 150 RYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQ 192
>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional.
Length = 374
Score = 31.6 bits (72), Expect = 0.015
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
A+ + +PL DF L K L+ILN+P+NP G+ +
Sbjct: 128 ASRAKVLLMPLT-----------KENDFT---PSLNEKELQEVDLVILNSPNNPTGRTLS 173
Query: 64 REEL 67
EEL
Sbjct: 174 LEEL 177
>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
This family contains pyridoxal phosphate-binding class
II aminotransferases (see pfam00222) closely related to,
yet distinct from, histidinol-phosphate aminotransferase
(HisC). It is found in cobalamin biosynthesis operons in
Salmonella typhimurium and Bacillus halodurans (each of
which also has HisC) and has been shown to have
L-threonine-O-3-phosphate decarboxylase activity in
Salmonella. Although the gene symbol cobD was assigned
in Salmonella, cobD in other contexts refers to a
different cobalamin biosynthesis enzyme, modeled by
pfam03186 and called cbiB in Salmonella [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 330
Score = 31.8 bits (73), Expect = 0.016
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D L + L+++ P+NP G++ E L +A
Sbjct: 115 DLDRLPAA-LEEADLLVVCNPNNPTGRLIPPETLLALAA 152
>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase. This
family of actinobacterial succinyldiaminopimelate
transaminase enzymes (DapC) are members of the pfam00155
superfamily. Many of these genes appear adjacent to
other genes encoding enzymes of the lysine biosynthesis
via diaminopimelate pathway (GenProp0125).
Length = 357
Score = 31.2 bits (71), Expect = 0.021
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
DP EL+ LI LN+P NP G+V + +EL I
Sbjct: 134 DPTELDP---VGPDLIWLNSPGNPTGRVLSVDELRAI 167
>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). Every member of this clade is from a
genome which possesses most of the lysine biosynthesis
pathway but lacks any of the known aminotransferases,
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Although there is no experimental characterization of
any of the sequences in this clade, a direct pathway is
known in plants and Chlamydia and the clade containing
the Chlamydia gene is a neighboring one in the same
pfam00155 superfamily so it seems quite reasonable that
these enzymes catalyze the same transformation.
Length = 383
Score = 31.2 bits (71), Expect = 0.022
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AGG P +PL++ + P DF P ++ K KL+ +N P+NP G V
Sbjct: 135 AGGEPYEMPLKEENGFLP-------DFDAIPEDIAKK----AKLMFINYPNNPTGAVAPL 183
Query: 65 EELE 68
+ +
Sbjct: 184 KFFK 187
>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This
model describes O-succinylhomoserine sulfhydrylase, one
of several related pyridoxal phosphate-dependent enzymes
of cysteine and methionine metabolism. This enzyme is
part of an alternative pathway of homocysteine
biosynthesis, a step in methionine biosynthesis [Amino
acid biosynthesis, Aspartate family].
Length = 381
Score = 31.0 bits (70), Expect = 0.026
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
D + E+ TK + + TP NPL ++ + +A
Sbjct: 128 DLSAWEAALKPNTKAVFVETPSNPLQELVDIAAVAELA 165
>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 31.0 bits (70), Expect = 0.027
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 30 DFKL------DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
DFK+ D A L++ + + KLI+L TP NPL +V EL AK
Sbjct: 117 DFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAK 165
>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional.
Length = 377
Score = 30.8 bits (70), Expect = 0.028
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+ E+E TK I + TP NPL K+ +++ IAK
Sbjct: 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAK 161
>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional.
Length = 410
Score = 30.8 bits (70), Expect = 0.032
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTRE 65
D P +++ K KL+ LN P+NP G V T+E
Sbjct: 168 DLDSIPKDIKEK----AKLLYLNYPNNPTGAVATKE 199
>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional.
Length = 386
Score = 30.7 bits (70), Expect = 0.039
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREEL 67
DPA E+ + RT+ I L TP+NP G V+ E L
Sbjct: 152 DPAAAEALITPRTRAIALVTPNNPTGVVYPPELL 185
>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 30.3 bits (69), Expect = 0.052
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREEL 67
+++LD + K++ + +P+NP G + ++L
Sbjct: 130 DNWQLDLPAIADNLD-GVKVVYVCSPNNPTGNLINPQDL 167
>gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase;
Provisional.
Length = 364
Score = 30.2 bits (68), Expect = 0.060
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 10 IYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEV 69
+ +PL D G H AD PA + + +S KL+ L +P NP G +++E
Sbjct: 126 VEVPLVDG---ADGFH---ADV---PAIVAAALASNAKLVFLCSPSNPAGSAIALDQIER 176
Query: 70 IAK 72
+
Sbjct: 177 ALQ 179
>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional.
Length = 388
Score = 29.9 bits (68), Expect = 0.066
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 36 AELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
L++ ++ ++ILN P+NP G T +E I +
Sbjct: 137 EALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVE 173
>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase.
Length = 447
Score = 29.9 bits (67), Expect = 0.070
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 PGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVI 70
P SS +F++ P LE+ + R + +++ P NPLG R LE I
Sbjct: 171 PIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDI 225
>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine
beta-lyase; Validated.
Length = 380
Score = 29.9 bits (67), Expect = 0.081
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D ++++ TK + L TP NPL K+ + +AK
Sbjct: 123 DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAK 161
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 29.5 bits (67), Expect = 0.088
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
D D A + TKL+ L TP NPL +V
Sbjct: 133 VDPGDDEALEAAIKEPNTKLVFLETPSNPLLEV 165
>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.
Length = 390
Score = 29.2 bits (66), Expect = 0.10
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D + TKL L TP NPL ++ L IA
Sbjct: 135 DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAH 173
>gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase;
Provisional.
Length = 335
Score = 29.6 bits (66), Expect = 0.10
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 48 LIILNTPHNPLGKVFTREELEVIAK 72
++ + P+NP G VF REE+E I K
Sbjct: 141 VVFIPNPNNPTGHVFEREEIERILK 165
>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 29.2 bits (66), Expect = 0.11
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKV 61
D + + + RTKLI + TP NPL +
Sbjct: 135 DLDAVRAAITPRTKLIWVETPTNPLLSI 162
>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
Provisional.
Length = 385
Score = 29.1 bits (66), Expect = 0.12
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AGG P ++PL++ + P D P ++ K KL+ +N P+NP G V
Sbjct: 137 AGGEPYFMPLKEENGFLP-------DLDAIPEDVAKK----AKLMFINYPNNPTGAVADL 185
Query: 65 E 65
E
Sbjct: 186 E 186
>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional.
Length = 399
Score = 28.2 bits (63), Expect = 0.23
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+ AG Y+PL K DF D + + + + K++ILN P NP+ +
Sbjct: 135 QMAGATSYYMPL-----------KKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMA 183
Query: 63 TREEL-EVIA 71
+ EVIA
Sbjct: 184 HEDFFKEVIA 193
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 28.4 bits (64), Expect = 0.25
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
LD LE + +TKL+ L+ N G T ++ IA+
Sbjct: 150 LDLDALEKLITPKTKLVALSHVSNVTG---TVNPVKEIAE 186
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD.
Length = 352
Score = 27.9 bits (63), Expect = 0.29
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
G P+++ D P + +DP +E+ + RTK II P + G
Sbjct: 77 LLGATPVFV---DIDPD---------TYNIDPELIEAAITPRTKAII---PVHLYGNPAD 121
Query: 64 REELEVIAK 72
+ + IAK
Sbjct: 122 MDAIMAIAK 130
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 27.8 bits (62), Expect = 0.38
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
A +L P +L S S RT+L+ + N LG +
Sbjct: 140 ATGELHPDDLASLLSPRTRLVAVTAASNTLGSI 172
>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional.
Length = 386
Score = 27.9 bits (62), Expect = 0.39
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 36 AELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
A++E+K TKLI + TP NP K+ +++ +AK
Sbjct: 137 ADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAK 173
>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
Length = 389
Score = 27.6 bits (62), Expect = 0.42
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTRE 65
+F D ++ + + + KL+ LN P+NP G V T+
Sbjct: 152 NFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKA 187
>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.
Length = 386
Score = 27.6 bits (61), Expect = 0.42
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKV 61
D L + + + KL+++ +P NPL +V
Sbjct: 126 DEQALRAALAEKPKLVLVESPSNPLLRV 153
>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
Length = 481
Score = 27.6 bits (62), Expect = 0.47
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 48 LIILNTPHNPLGKVFTREELEVIAK 72
L+++N P NP G+V TR+ +E I K
Sbjct: 222 LVVIN-PGNPTGQVLTRDVMEEIIK 245
>gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase;
Validated.
Length = 388
Score = 27.7 bits (62), Expect = 0.47
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNP 57
AGG +PL ++ DF A++ ++ ++ +L++L+ PHNP
Sbjct: 136 AGGQIYPMPL-----------RAENDFLPVFADIPTEVLAQARLMVLSYPHNP 177
>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 27.3 bits (61), Expect = 0.52
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTRE 65
G +PL+D G H D + +TK++ + P+NP G E
Sbjct: 126 GAEVREVPLKD------GGH--------DLEAMLKAIDEQTKIVWICNPNNPTGTYVNHE 171
Query: 66 ELE 68
EL
Sbjct: 172 ELL 174
>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
Length = 390
Score = 27.0 bits (60), Expect = 0.63
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKV 61
+ E+ TKL + TP NPL KV
Sbjct: 127 NLEEVAQNIKPNTKLFYVETPSNPLLKV 154
>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
Length = 496
Score = 27.0 bits (59), Expect = 0.70
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 27 SSADFKL--DPAELESK----FSSRTKLIILNTPHNPLGKVFTREEL 67
SS +FKL D A+ K + + K +IL P NPLG + ++ L
Sbjct: 175 SSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTL 221
>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional.
Length = 403
Score = 27.1 bits (60), Expect = 0.71
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 34 DPAELESKFSSRTKLIILNTPHNP 57
DPA L++ S +T+++ TP NP
Sbjct: 139 DPAALKAAISDKTRMVYFETPANP 162
>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 430
Score = 27.0 bits (60), Expect = 0.71
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
+++D +E+ T +++ P+NP G V++ E L IA
Sbjct: 175 GWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIA 216
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 27.0 bits (60), Expect = 0.82
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 31 FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREEL 67
FK T I ++ P NP G V T EEL
Sbjct: 165 FKYHVDFEHLHIGESTGAICVSRPTNPTGNVLTDEEL 201
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 26.7 bits (60), Expect = 0.83
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
D +LD LE + RTKL+ + N LG +
Sbjct: 123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTI 155
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 26.6 bits (59), Expect = 0.86
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 32 KLDPAELESKFSSRTKLIILNTPHNPLGKVFTREEL 67
DP +LE + R ++ P+NP GK + +EL
Sbjct: 105 PNDPEKLE-ELVERNSVVFFCNPNNPDGKFYNFKEL 139
>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys.
Length = 378
Score = 26.7 bits (59), Expect = 0.88
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKV 61
D ++++ +TKL++L +P NPL K+
Sbjct: 120 DLDKVKAALGPKTKLVLLESPTNPLQKI 147
>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 26.7 bits (59), Expect = 0.96
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 47 KLIILNTPHNPLGKVFTREEL 67
KL+ L P+NP G V RE++
Sbjct: 150 KLVFLCNPNNPTGSVIEREDI 170
>gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyzes the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 362
Score = 26.4 bits (59), Expect = 1.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+ +DPA +E+ + RTK I+ P + G+ + + IA
Sbjct: 97 TYNIDPAAIEAAITPRTKAIM---PVHLYGQPADMDAIRAIAA 136
>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
Length = 400
Score = 26.3 bits (58), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
+ E+ + + TK++ L TP NP KV + + IA
Sbjct: 138 NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIA 175
>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
Length = 416
Score = 26.0 bits (58), Expect = 1.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 41 KFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
T I ++ P NP G V T EELE +
Sbjct: 175 HIDEDTGAICVSRPTNPTGNVLTDEELEKLD 205
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 26.2 bits (58), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 46 TKLIILNTPHNPLGKVFTREEL 67
+I L +P+NP G V T+E+L
Sbjct: 174 IDIIYLCSPNNPTGTVLTKEQL 195
>gnl|CDD|180188 PRK05664, PRK05664, threonine-phosphate decarboxylase; Reviewed.
Length = 330
Score = 26.1 bits (58), Expect = 1.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 31 FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREEL 67
+LD AE+E+ S L+++N P+NP G+ F L
Sbjct: 111 RELDEAEVEAALDSLDVLVVVN-PNNPTGRRFDPARL 146
>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 427
Score = 25.8 bits (57), Expect = 1.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
DPA E + RTK I + + NP G V + +A
Sbjct: 137 DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAH 175
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 25.7 bits (57), Expect = 1.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 48 LIILNTPHNPLGKVFTREELEVIAK 72
L+ L P+NP G++ ++EE++ I
Sbjct: 144 LVFLCNPNNPTGQLISKEEMKKILD 168
>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
Validated.
Length = 409
Score = 25.6 bits (57), Expect = 2.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 48 LIILNTPHNPLGKVFTREEL 67
+I L P+NP G V T+E+L
Sbjct: 179 IIYLCFPNNPTGTVLTKEQL 198
>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase;
Provisional.
Length = 354
Score = 25.4 bits (56), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 28 SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELE 68
+AD++L +E KL+ + P+NP G V R ++E
Sbjct: 132 TADYQLPLDYIEQ--LDGAKLVFICNPNNPTGTVIDRADIE 170
>gnl|CDD|217937 pfam04166, PdxA, Pyridoxal phosphate biosynthetic protein PdxA. In
Escherichia coli the coenzyme pyridoxal 5'-phosphate is
synthesised de novo by a pathway that is thought to
involve the condensation of
4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose,
catalyzed by the enzymes PdxA and PdxJ, to form either
pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Length = 299
Score = 25.4 bits (56), Expect = 2.4
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 36 AELESKFSSRTKLII---LNTPHNPLGKVFTREELEVIAK 72
L KF I LN PH G V REE+E I
Sbjct: 167 KALREKFGIAEPRIAVAGLN-PHAGEGGVLGREEIEEIIP 205
>gnl|CDD|132491 TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase,
Actinobacterial type. This enzyme, inositol 1-phosphate
synthase as found in Actinobacteria, produces an
essential precursor for several different products,
including mycothiol, which is a glutathione analog, and
phosphatidylinositol, which is a phospholipid.
Length = 351
Score = 25.7 bits (56), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 30 DFK--LDPAELESKFSSRTKLIILNTPHNPLG 59
DFK L+ LESK S+T+ + N P PL
Sbjct: 220 DFKNMLERDRLESKKISKTQAVTSNLPDRPLK 251
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
Length = 471
Score = 25.6 bits (56), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 6 GGVPIY--IPLQDTSPAEPGRHKSSAD 30
GG I+ IP+QD SPA PG +A+
Sbjct: 173 GGAAIFGFIPMQDGSPA-PGLRNLTAE 198
>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 431
Score = 25.6 bits (56), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
DP E+ + +TK + T NP G V E + IA
Sbjct: 138 DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIA 175
>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional.
Length = 394
Score = 25.4 bits (56), Expect = 2.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 26 KSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
K D+ +D + + + + + K++ N P NP RE E I
Sbjct: 151 KPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEI 195
>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional.
Length = 405
Score = 25.3 bits (55), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKV 61
DP L + KL+++ TP NPL ++
Sbjct: 134 DPRSLADALAQSPKLVLIETPSNPLLRI 161
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 25.3 bits (56), Expect = 2.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
LD EL + + T L+ + +N G +F EE+ IAK
Sbjct: 124 LDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAK 163
>gnl|CDD|237960 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH;
Provisional.
Length = 438
Score = 25.2 bits (56), Expect = 3.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+D + LE+ S +TK I++ H LG F ++
Sbjct: 147 IDASLLEAAVSPKTKAIMI--AHT-LGNPFDLAAVKAFCD 183
>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase;
Validated.
Length = 332
Score = 25.2 bits (55), Expect = 3.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 43 SSRTKLIILNTPHNPLGKVFTREELEVI 70
+ LI + +P NPLG + +R+ L I
Sbjct: 120 NYNFDLIFIVSPDNPLGNLISRDSLLTI 147
>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 24.9 bits (55), Expect = 3.9
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
DP E+ TK + T NP V E + IA
Sbjct: 136 DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAH 174
>gnl|CDD|235647 PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed.
Length = 249
Score = 24.9 bits (55), Expect = 4.1
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 11/53 (20%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPH 55
G V ++ PL + P + P + +I + +
Sbjct: 21 RELGFVALHFPLIEIEP-----------GRQLPQLAAQLAALGADWVIFTSKN 62
>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1.
Length = 462
Score = 25.1 bits (54), Expect = 4.2
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
++++D +E+ T +++ P+NP G V++ + L+ +A+
Sbjct: 189 EWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAE 231
>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase.
This family consists of O-succinylhomoserine
(thiol)-lyase, one of three different enzymes designated
cystathionine gamma-synthase and involved in methionine
biosynthesis. In all three cases, sulfur is added by
transsulfuration from Cys to yield cystathionine rather
than by a sulfhydrylation step that uses H2S directly
and bypasses cystathionine [Amino acid biosynthesis,
Aspartate family].
Length = 382
Score = 24.8 bits (54), Expect = 4.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D L + + + KL+++ TP NPL +V ++ +AK
Sbjct: 125 DEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAK 163
>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 24.5 bits (54), Expect = 4.8
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 48 LIILNTP-HNPLGKVFTREELEVIAK 72
+++L+ HNP G T E+ + +A
Sbjct: 174 VVLLHGCCHNPTGIDPTEEQWQELAD 199
>gnl|CDD|132861 cd07222, Pat_PNPLA4, Patatin-like phospholipase domain containing
protein 4. PNPLA4, also known as GS2 (gene sequence-2),
shows both lipase and transacylation activities. GS2
lipase is expressed in various tissues, predominantly in
muscle and adipocytes tissue. It is also expressed in
keratinocytes and shows retinyl ester hydrolase,
acylglycerol, TG hydrolase, and PLA2 activity. This
family includes patatin-like proteins: GS2 from mammals,
PNPLA4 (Patatin-like phospholipase domain-containing
protein 4), and iPLA2-eta (Calcium-independent
phospholipase A2) from Homo sapiens.
Length = 246
Score = 24.6 bits (54), Expect = 4.8
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGR-HKSSADFKLDPAELESKFSSRTKLI 49
M+ G+ +P D R H S + K L S F+SR LI
Sbjct: 84 MARLRKGIESILP-TDAHELANDRLHVSITNLKTRKNYLVSNFTSREDLI 132
>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase,
classical (c) SDR. D-mannonate oxidoreductase catalyzes
the NAD-dependent interconversion of D-mannonate and
D-fructuronate. This subgroup includes Bacillus
subtitils UxuB/YjmF, a putative D-mannonate
oxidoreductase; the B. subtilis UxuB gene is part of a
putative ten-gene operon (the Yjm operon) involved in
hexuronate catabolism. Escherichia coli UxuB does not
belong to this subgroup. This subgroup has a canonical
active site tetrad and a typical Gly-rich NAD-binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 271
Score = 24.7 bits (54), Expect = 5.2
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 39 ESKFSSRTKLIILNTPHNPLGKVFTREEL 67
+ ++ R+ I+ TP GK EEL
Sbjct: 214 DGSYTDRSNKILGRTPMGRFGKP---EEL 239
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 24.5 bits (54), Expect = 5.2
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
+E G +IPL D D LD +LE + +TKL+ + N LG V
Sbjct: 129 AERTGATLKFIPLDD-------------DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTV 175
Query: 62 FTREELEVIAK 72
EE+ +A
Sbjct: 176 NPVEEIAKLAH 186
>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
Length = 403
Score = 24.7 bits (54), Expect = 5.4
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 18/57 (31%)
Query: 30 DFKLDPAELESKF-----------SSRTKLIILNTPHNPLGKVFTR---EELEVIAK 72
DF+LD E +F S + K +++N PHNP + E L +AK
Sbjct: 153 DFELD----EDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAK 205
>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model
describes a distinct clade of the Cys/Met metabolism
pyridoxal phosphate-dependent enzyme superfamily.
Members include examples of OAH/OAS sulfhydrylase, an
enzyme with activity both as O-acetylhomoserine (OAH)
sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
sulphydrylase (EC 2.5.1.47). An alternate name for OAH
sulfhydrylase is homocysteine synthase. This model is
designated subfamily because it may or may not have both
activities [Amino acid biosynthesis, Aspartate family,
Amino acid biosynthesis, Serine family].
Length = 418
Score = 24.6 bits (54), Expect = 5.6
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
DP E E TK + T NP V E + +A
Sbjct: 131 DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAH 169
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 24.5 bits (53), Expect = 6.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELE 68
AD KL+ EL+S+ ++ KL I+ NP ++ + +++
Sbjct: 16 ADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIK 55
>gnl|CDD|234696 PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed.
Length = 332
Score = 24.4 bits (54), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 51 LNTPHNPLGKVFTREELEVIA 71
LN PH G F REE+++I
Sbjct: 210 LN-PHAGEGGHFGREEIDIII 229
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 24.1 bits (53), Expect = 8.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
LD LE + RTKL+ + N G V EE+ +A
Sbjct: 127 LDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAH 166
>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model
describes a methionine gamma-lyase subset of a family of
PLP-dependent trans-sulfuration enzymes. The member from
the parasite Trichomonas vaginalis is described as
catalyzing alpha gamma- and alpha-beta eliminations and
gamma-replacement reactions on methionine, cysteine, and
some derivatives. Likewise, the enzyme from Pseudomonas
degrades cysteine as well as methionine [Energy
metabolism, Amino acids and amines].
Length = 391
Score = 24.1 bits (52), Expect = 8.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 35 PAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
P E+++ TK++ TP NP K+ E + A
Sbjct: 134 PEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAH 171
>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 23.9 bits (52), Expect = 8.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
LD +L+ S +TKL+ + N LG + E++ A
Sbjct: 161 LDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAH 200
>gnl|CDD|240356 PTZ00315, PTZ00315, 2'-phosphotransferase; Provisional.
Length = 582
Score = 24.1 bits (52), Expect = 9.4
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 15 QDTSPAEPGR----HKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
Q + P R H+ DF L L+ + +L+ P + +VF E+L
Sbjct: 322 QQSMPERKHRSAYRHEDPLDFLLPLLVLDRNRDAVQELLSDTRPADAPSRVFDEEKLVTY 381
Query: 71 AK 72
+K
Sbjct: 382 SK 383
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.131 0.368
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,612,725
Number of extensions: 256513
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 128
Length of query: 72
Length of database: 10,937,602
Length adjustment: 42
Effective length of query: 30
Effective length of database: 9,074,734
Effective search space: 272242020
Effective search space used: 272242020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)