RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy790
(72 letters)
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 106 bits (267), Expect = 1e-29
Identities = 41/72 (56%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
M +AAGG+P +IPL+ P + G SSAD+ LD ELE+ F+ +TK+II+NTPHNPLGK
Sbjct: 141 MVKAAGGIPRFIPLK---PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 197
Query: 61 VFTREELEVIAK 72
V R ELEV+A
Sbjct: 198 VMDRAELEVVAN 209
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 106 bits (266), Expect = 2e-29
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
M AG VP++IPL+ S G +S+D+ DP ELESKFSS+TK IILNTPHNPLGK
Sbjct: 125 MVRMAGAVPVFIPLR--SKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGK 182
Query: 61 VFTREELEVIAK 72
V+TR+EL+VIA
Sbjct: 183 VYTRQELQVIAD 194
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 105 bits (265), Expect = 2e-29
Identities = 38/72 (52%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
M+ AGG P+++ L+ P + G SS++++LDP EL KF+SRTK ++LNTP+NPLGK
Sbjct: 131 MTMMAGGRPVFVSLKPG-PIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGK 189
Query: 61 VFTREELEVIAK 72
VF+REELE++A
Sbjct: 190 VFSREELELVAS 201
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 105 bits (263), Expect = 5e-29
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
E GG +Y+P+ R+ ++ +D + E +S+TK +I+NTPHNP+GK
Sbjct: 158 NIELCGGKVVYVPIN-PPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGK 216
Query: 61 VFTREELEVIAK 72
VFTREEL +
Sbjct: 217 VFTREELTTLGN 228
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 99.2 bits (248), Expect = 5e-27
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ AG + L T F+LD + LE + RT+ ++LNTP NP G
Sbjct: 118 DAFLAGAKARLVRLDLTPE----------GFRLDLSALEKALTPRTRALLLNTPMNPTGL 167
Query: 61 VFTREELEVIAK 72
VF ELE IA+
Sbjct: 168 VFGERELEAIAR 179
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 97.3 bits (243), Expect = 4e-26
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ AG + +PL F LD L + RT+ +I+N+PHNP G
Sbjct: 126 VVAMAGAHRVTVPL----------VPDGRGFALDADALRRAVTPRTRALIINSPHNPTGA 175
Query: 61 VFTREELEVIAK 72
V + EL IA+
Sbjct: 176 VLSATELAAIAE 187
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 95.3 bits (238), Expect = 1e-25
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+GG+ + LQ F++D E + S RT+L+ILNTPHNP
Sbjct: 131 AIALSGGIVKRMALQ------------PPHFRVDWQEFAALLSERTRLVILNTPHNPSAT 178
Query: 61 VFTREELEVIAK 72
V+ + + + +
Sbjct: 179 VWQQADFAALWQ 190
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 77.2 bits (191), Expect = 7e-19
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
G + + L S E LD LE F + ++ + + P+NP G V++
Sbjct: 146 FEGEMVPVQLDYVSADETR-------AGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 198
Query: 65 EELEVIAK 72
EE+ IA
Sbjct: 199 EEIGQIAA 206
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 74.5 bits (184), Expect = 6e-18
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ ++ G + + + D +L TK+I +N +NP G
Sbjct: 121 IPKSLGAEVDLWQI-----------EEENGWLPDLEKLRQLIRPTTKMICINNANNPTGA 169
Query: 61 VFTREELEVIAK 72
V R LE + +
Sbjct: 170 VMDRTYLEELVE 181
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 73.4 bits (181), Expect = 2e-17
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
AAG + +P F++D LE + ++ T+ +I+N+P+NP G
Sbjct: 140 FVNAAGARLVEVPADTE------------HFQIDFDALEERINAHTRGVIINSPNNPSGT 187
Query: 61 VFTREELEVIAK 72
V++ E ++ ++
Sbjct: 188 VYSEETIKKLSD 199
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 72.9 bits (180), Expect = 2e-17
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AGG P+ +P +F+L+ EL+ + +T+ +I+N+P NP G V T+
Sbjct: 131 AGGKPVEVPT-----------YEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK 179
Query: 65 EELEVIAK 72
++LE IA
Sbjct: 180 KDLEEIAD 187
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 72.6 bits (179), Expect = 3e-17
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
GG P+ D++ D ++ K + RTK I + P+NP G ++ +
Sbjct: 145 YGGKPVEYRT-----------IEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDK 193
Query: 65 EELEVIAK 72
+ LE I
Sbjct: 194 KTLEEILN 201
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 72.4 bits (178), Expect = 5e-17
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
G L + KL + + II + P+NP +
Sbjct: 149 QCRILGQKFESFDLFEYR-----------GEKLREKLESYLQTGQFCSIIYSNPNNPTWQ 197
Query: 61 VFTREELEVIAK 72
T EEL +I +
Sbjct: 198 CMTDEELRIIGE 209
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 71.0 bits (175), Expect = 1e-16
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AGG + S +F+ E+E +TK +++N+P+NP G V+ R
Sbjct: 145 AGGTVNVVET-----------FMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 193
Query: 65 EELEVIAK 72
E LE + +
Sbjct: 194 EFLEGLVR 201
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 70.2 bits (173), Expect = 2e-16
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
M AGGV + + T P E F DP + + RTK +++N+P+NP G
Sbjct: 131 MVRFAGGVVVEVE---TLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61 VFTREELEVIAK 72
V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 69.8 bits (172), Expect = 3e-16
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
M + A G P+ +P T+ FK+ P ++ + +TKL++ NTP NP G
Sbjct: 130 MVKLAEGTPVILP---TTVET--------QFKVSPEQIRQAITPKTKLLVFNTPSNPTGM 178
Query: 61 VFTREELEVIAK 72
V+T +E+ IA+
Sbjct: 179 VYTPDEVRAIAQ 190
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 68.8 bits (169), Expect = 7e-16
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ +A G + + D++ D E+ +TKL+I+ P NP G
Sbjct: 144 VCKAYGIGMHFYNC-----------RPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 192
Query: 61 VFTREELEVIAK 72
F+R+ +E I +
Sbjct: 193 NFSRKHVEDIVR 204
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 68.4 bits (168), Expect = 1e-15
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
++E+ G L +++D +LE +T +I+N P NP G
Sbjct: 158 LAESMGIEVKLYNL-----------LPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGS 206
Query: 61 VFTREELEVIAK 72
VF++ L+ I
Sbjct: 207 VFSKRHLQKILA 218
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 66.0 bits (161), Expect = 7e-15
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ E + + L D++++P E+E K +I+ P NP K
Sbjct: 209 IPELKDYELVEVDL---------HSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSK 259
Query: 61 VFTREELEVIAK 72
F L I +
Sbjct: 260 EFDTNALNAIKQ 271
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 66.0 bits (162), Expect = 7e-15
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
++ AG I + + F + P LES + RTK I+L+ P NP G
Sbjct: 142 FAKIAGVKLIPVTR-----------RMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGV 189
Query: 61 VFTREELEVIAK 72
V+ ++E+ + +
Sbjct: 190 VYGKDEMRYLVE 201
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 64.1 bits (157), Expect = 3e-14
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD--FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREE 66
P Y P + R D ++ ++E F + + I+L P+NPLG VF E
Sbjct: 113 PAYPPFFH-LLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEW 171
Query: 67 LEVIA 71
L +
Sbjct: 172 LNELC 176
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 62.9 bits (154), Expect = 9e-14
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 14/72 (19%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ A G VP+ +P T+P + PA+ +++ +P NP G
Sbjct: 131 ILRALGLVPVDLP---TAPEN--------RLQPVPADFAGL---DLAGLMVASPANPTGT 176
Query: 61 VFTREELEVIAK 72
+ + + +
Sbjct: 177 MLDHAAMGALIE 188
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 61.0 bits (148), Expect = 4e-13
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ E A + + S +++ +EL+ K+ P NP
Sbjct: 210 IPELAQYALEEVAINADP---------SLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSV 260
Query: 61 VFTREELEVIAK 72
+ LE +
Sbjct: 261 KMDQRSLERVRN 272
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 60.4 bits (147), Expect = 6e-13
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELES------KFSSRTKLIILNTPHNP 57
G I I +SS +FK+ ++ K + + K +IL P NP
Sbjct: 152 RTGVQLIPIHC-----------ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNP 200
Query: 58 LGKVFTREELEVIAK 72
LG ++ L+ +
Sbjct: 201 LGTTLDKDTLKSVLS 215
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 59.8 bits (146), Expect = 1e-12
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
PIY P + R + + +D LE +F KL++L +PHNP+G+V
Sbjct: 114 PIYPPFFE-MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRV 172
Query: 62 FTREELEVIA 71
+ +EEL +
Sbjct: 173 WKKEELTKLG 182
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 59.3 bits (144), Expect = 2e-12
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 17/75 (22%)
Query: 4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELES------KFSSRTKLIILNTPHNP 57
G + I SS F++ LE K + R K +++ P NP
Sbjct: 155 RTGVEIVPIHC-----------TSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNP 203
Query: 58 LGKVFTREELEVIAK 72
LG TR EL ++
Sbjct: 204 LGTTMTRNELYLLLS 218
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 57.1 bits (139), Expect = 8e-12
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 19/72 (26%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
G P++ LE S +TK II+N+P NPLG+
Sbjct: 129 FIRFLGAKPVFCDF-------------------TVESLEEALSDKTKAIIINSPSNPLGE 169
Query: 61 VFTREELEVIAK 72
V RE E +
Sbjct: 170 VIDREIYEFAYE 181
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 56.4 bits (137), Expect = 2e-11
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
A G P+ + L+ + D ++++S+ +TKLI L P+NP G T+
Sbjct: 153 ADGKPVPLNLEPP------------HYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK 200
Query: 65 EELEVIAK 72
E +
Sbjct: 201 EVFDEAIA 208
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 56.1 bits (136), Expect = 2e-11
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
AG +PL DF + + + +++IL P NP +
Sbjct: 143 AGAQVRSVPL-----------VPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVEL 191
Query: 65 EELEVIAK 72
+ E +
Sbjct: 192 DFFERVVA 199
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 55.2 bits (134), Expect = 4e-11
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
P Y + R + D +LE+ + K+++L +P NP GK
Sbjct: 119 PAYDAFYK-AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGK 177
Query: 61 VFTREELEVIA 71
V+T +ELE++A
Sbjct: 178 VWTCDELEIMA 188
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 55.2 bits (134), Expect = 4e-11
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
P+Y P S R S F++D +LE+ + KL +L PHNP G+
Sbjct: 121 PVYPPFAR-SVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGR 179
Query: 61 VFTREELEVIA 71
V+ RE LE I
Sbjct: 180 VWEREVLEQIG 190
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 54.8 bits (133), Expect = 5e-11
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
P+Y P + R + + +D +LE K ++ +PHNP+G+
Sbjct: 121 PVYYPFFM-AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGR 179
Query: 61 VFTREELEVIA 71
V+ ++EL+ I
Sbjct: 180 VWKKDELQKIK 190
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 54.8 bits (133), Expect = 6e-11
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
P+Y GR S+D + ++ A+LE K + ++++ PHNP+G
Sbjct: 117 PVYNMFYS-VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGY 175
Query: 61 VFTREELEVIA 71
++ EE++ IA
Sbjct: 176 AWSEEEVKRIA 186
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 54.5 bits (132), Expect = 8e-11
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
P+Y P + F++D +LE + K+ +L +PHNP G+
Sbjct: 151 PVYYPFAR-TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGR 209
Query: 61 VFTREELEVIA 71
V+ ++L IA
Sbjct: 210 VWDNDDLIKIA 220
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 54.3 bits (131), Expect = 9e-11
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 14/73 (19%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTK---LIILNTPHNPLG 59
G + D L S K ++ILN P+NP G
Sbjct: 155 NTRNGANLQTYP-----------IFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTG 203
Query: 60 KVFTREELEVIAK 72
T +E+ I +
Sbjct: 204 YTPTHKEVTTIVE 216
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 53.7 bits (130), Expect = 2e-10
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD--------FKLDPAELESKFSSRTKLIILNTPHNPLGK 60
P+Y P R + + +D ++E+K KL IL PHNP+G+
Sbjct: 122 PVYSPFNS-VVKNNNRELIISPLQKLENGNYIMDYEDIENKIK-DVKLFILCNPHNPVGR 179
Query: 61 VFTREELEVIA 71
V+T++EL+ +
Sbjct: 180 VWTKDELKKLG 190
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 53.3 bits (129), Expect = 2e-10
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
A IPL+ D D + K+++LN P+NP G V
Sbjct: 131 ASLRTFLIPLR-------------EDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADW 177
Query: 65 EELEVIAK 72
E
Sbjct: 178 GYFEEALG 185
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 50.7 bits (122), Expect = 2e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
FK T +I ++ P NP G V T EEL + +
Sbjct: 165 QFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDR 207
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 50.2 bits (120), Expect = 3e-09
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 17/74 (22%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPL 58
GG + L S + L+ ++++ + + +++ P NP
Sbjct: 202 HGGALVPYYL-----------NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPT 250
Query: 59 GKVFTREELEVIAK 72
G+V E I K
Sbjct: 251 GQVLAEENQYDIVK 264
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 50.2 bits (120), Expect = 3e-09
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT-----KLIILNTPHNPLG 59
+ + L + L+ EL K++ + P NP G
Sbjct: 201 LDAIQVNYYL-----------DEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249
Query: 60 KVFTREELEVIAK 72
+V +R+ +E +
Sbjct: 250 QVQSRKCIEDVIH 262
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 49.8 bits (120), Expect = 4e-09
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
++ G ++ L + + +D ++ SK +I+ P+NP G +
Sbjct: 115 AKKHGVSVVFSYLDE-------------NMCIDYEDIISKID-DVDSVIIGNPNNPNGGL 160
Query: 62 FTREELEVIAK 72
+E+ + K
Sbjct: 161 INKEKFIHVLK 171
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 49.2 bits (117), Expect = 6e-09
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+ + A + + + ++ +P+NP G + R + K
Sbjct: 181 VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL--RHAVIKGCK 221
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 48.7 bits (117), Expect = 1e-08
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+G L + + ++L A LE + + L TP+NP G +
Sbjct: 116 AQSGCEIRRWSL-----------READGWQLTDAILE-ALTPDLDCLFLCTPNNPTGLLP 163
Query: 63 TREELEVIAK 72
R L+ IA
Sbjct: 164 ERPLLQAIAD 173
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 48.0 bits (115), Expect = 2e-08
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 17/69 (24%)
Query: 5 AGGVPI-YIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
G I +P F + E ++ L +P+NP G V
Sbjct: 138 TGAKEIIALPC-----------LQENAFFPEFPEDT-----HIDILCLCSPNNPTGTVLN 181
Query: 64 REELEVIAK 72
+++L I
Sbjct: 182 KDQLRAIVH 190
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 45.2 bits (108), Expect = 1e-07
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
+ G IPL D + D + + +T ++ + P+NP G
Sbjct: 125 ALIEGAEVREIPLLQ-------------DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNY 171
Query: 62 FTREELEVIAK 72
+++
Sbjct: 172 IELADIQAFLD 182
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 44.7 bits (106), Expect = 2e-07
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKV 61
A +P + T E G K +++D LE+ + R I + P NP G V
Sbjct: 169 AAVLPHIDEV--THDGEEGFFK----YRVDFEALENLPALKEGRIGAICCSRPTNPTGNV 222
Query: 62 FTREELEVIAK 72
T EE+ +A+
Sbjct: 223 LTDEEMAHLAE 233
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 44.1 bits (105), Expect = 4e-07
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
GG + F D + + RTKL+ + +P+NP G V
Sbjct: 140 GGGEIHFANCPAP------------SFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDL 187
Query: 65 EELE 68
+ +
Sbjct: 188 DGWK 191
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 43.4 bits (103), Expect = 7e-07
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
F D + + RT +I +P+NP G TRE+L + +
Sbjct: 188 GFFPDLSTVG-----RTDIIFFCSPNNPTGAAATREQLTQLVE 225
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 43.3 bits (103), Expect = 8e-07
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
+ +PL DF L K L+ILN+P+NP G+ +
Sbjct: 128 IKAKSLLMPL-----------TKENDFTPS---LNEKELQEVDLVILNSPNNPTGRTLSL 173
Query: 65 EELE 68
EEL
Sbjct: 174 EELI 177
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 42.5 bits (101), Expect = 1e-06
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+G I L D D LDP +L SR ++L P NP G+
Sbjct: 108 AVSGLRHFEIGLTD-------------DLLLDPNDLAQ--VSRDDCVVLANPSNPTGQAL 152
Query: 63 TREELEVIAK 72
+ EL+ + +
Sbjct: 153 SAGELDQLRQ 162
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 13/71 (18%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
++ G + +L KLI L P+NPLG+
Sbjct: 123 AKQCGAKCYKTQSIT-------------HNLDEFKKLYETHKDEIKLIFLCLPNNPLGEC 169
Query: 62 FTREELEVIAK 72
E K
Sbjct: 170 LDASEATEFIK 180
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 42.2 bits (100), Expect = 2e-06
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD-PAELESKFSSRTKLIILNTPHNPLGK 60
++ I + ADF++D LE + + ++ + TP+NP G
Sbjct: 133 AKGTHTEFIAVSRG-------------ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGD 179
Query: 61 VFTREELEVIAK 72
V + +++E I
Sbjct: 180 VTSLDDVERIIN 191
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 41.4 bits (98), Expect = 3e-06
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 18/71 (25%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
++A G + +PL D ++ + ++ + P+NP G V
Sbjct: 113 AKAVGAKFLEVPLTK-------------DLRIPEVNVG-----EGDVVFIPNPNNPTGHV 154
Query: 62 FTREELEVIAK 72
F REE+E I K
Sbjct: 155 FEREEIERILK 165
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 41.0 bits (97), Expect = 4e-06
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 29 ADFKLD-PAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
ADF LD A L + + ++ L P+NP G +F ++E I +
Sbjct: 140 ADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVR 184
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 40.7 bits (96), Expect = 7e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
F D ++ + RT +I +P+NP G TR +L +
Sbjct: 199 HFFPDLSKAK-----RTDIIFFCSPNNPTGAAATRAQLTELVN 236
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 40.6 bits (96), Expect = 7e-06
Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 20/70 (28%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
+ P + ++ S L P+NP G++
Sbjct: 107 RMYEHEVCFYPSNE--------------------DIGEADFSNMDFCWLCNPNNPDGRLL 146
Query: 63 TREELEVIAK 72
R E+ +
Sbjct: 147 QRTEILRLLN 156
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 39.9 bits (94), Expect = 1e-05
Identities = 8/44 (18%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+++LD + K K++ + +P+NP G++ ++ + +
Sbjct: 131 DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLE 173
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
+E G L DF++ K+ L TP+ PLG
Sbjct: 123 AEVQGARVRTFGLTG-------------DFRIAGFPERY----EGKVFFLTTPNAPLGPS 165
Query: 62 FTREELEVIAK 72
F E ++ +A+
Sbjct: 166 FPLEYIDELAR 176
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 38.7 bits (91), Expect = 3e-05
Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT--KLIILNTPHNPLG 59
++ AG + + D ++ D L++ ++ + ++ L P+NP G
Sbjct: 109 AKIAGMKVTKVKMLD-------------NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTG 155
Query: 60 KVFTREELE 68
+ + +E
Sbjct: 156 TITPADVIE 164
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 35.2 bits (82), Expect = 5e-04
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D LE+ + T++I +P NP + + IA+
Sbjct: 139 DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIAR 177
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 35.2 bits (82), Expect = 6e-04
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
P E+ + TK++ + TP NP + E + IA
Sbjct: 138 KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAH 176
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 34.8 bits (81), Expect = 6e-04
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D ++++ + TK++ L +P NP KV + + V+
Sbjct: 133 DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCH 171
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
P E++ TK++ TP NP K+ E + A
Sbjct: 136 IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAH 174
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 33.8 bits (77), Expect = 0.002
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 28 SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
S +K + + + ++ +P+NP G + RE +
Sbjct: 141 SGMYKWEG-DAWGFDKKGPYIELVTSPNNPDGTI--RETVVNRPD 182
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 33.7 bits (78), Expect = 0.002
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D ++ E S T+ + TP NP+ + + +A
Sbjct: 155 DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAH 193
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 32.9 bits (76), Expect = 0.003
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D L + + + KL+++ +P NPL +V ++ +A+
Sbjct: 126 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR 164
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas
vaginalis} SCOP: c.67.1.3
Length = 331
Score = 32.8 bits (76), Expect = 0.004
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKV 61
P +E T+++ TP NP KV
Sbjct: 72 VPGNIEKHLKPNTRIVYFETPANPTLKV 99
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 32.6 bits (75), Expect = 0.005
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
E+ + +TKL+ L +P NP ++ ++ +A
Sbjct: 206 KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH 244
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 32.5 bits (75), Expect = 0.005
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
DPA ++ + TK++ + TP NP+ K+ + VIA+
Sbjct: 141 DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIAR 179
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 32.1 bits (74), Expect = 0.006
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D + + T+LI + TP NPL + + +
Sbjct: 140 DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGA 178
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 32.1 bits (74), Expect = 0.006
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
LE+ + TKL+ + TP NP KV E I
Sbjct: 140 KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVH 178
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET:
PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Length = 393
Score = 32.1 bits (74), Expect = 0.006
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+L TKL+ + TP NP KV +++ + K
Sbjct: 127 LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIK 165
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 30.6 bits (70), Expect = 0.023
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKV 61
L A++ TK++ L +P + +V
Sbjct: 155 LIGADIVKHLQPNTKIVFLESPGSITMEV 183
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 30.7 bits (70), Expect = 0.024
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 28 SADFKLDPAELESKF-------SSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D KL A++ES KL+ ++ +G +T++ELE I+
Sbjct: 121 CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTE-VGTQYTKQELEDISA 171
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 29.4 bits (67), Expect = 0.063
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 30 DFKLDPAELESKFSSRTKLII 50
D +D LE + RTK I+
Sbjct: 106 DGNIDELALEKLINERTKAIV 126
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 28.8 bits (65), Expect = 0.093
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 34 DPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK 72
D LE + + L +P NP + E + +
Sbjct: 188 DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCH 227
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 28.6 bits (65), Expect = 0.12
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 33 LDPAELESKFSSRTKLII 50
LD A+LE+ + RTK I+
Sbjct: 132 LDAAKLEALITPRTKAIM 149
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: LLP; 2.0A {Thermus
thermophilus}
Length = 412
Score = 28.3 bits (64), Expect = 0.14
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+P + S++T+ + + T NP V E L +A+
Sbjct: 129 EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAE 167
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 28.3 bits (64), Expect = 0.14
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 31 FKLDPAELESKFSSRTKLII 50
+ P +E+ + +TK II
Sbjct: 113 LMVTPEHIEAAITPQTKAII 132
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis;
HET: MSE PMP; 1.80A {Coxiella burnetii}
Length = 374
Score = 28.2 bits (64), Expect = 0.18
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 30 DFKLDPAELESKFSSRTKLII 50
+ +DP ++E+ + +TK I+
Sbjct: 110 GYVIDPEKIEAAITDKTKAIM 130
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 28.1 bits (63), Expect = 0.20
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 16/75 (21%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTK-----LIILNTPHNP 57
E AG +P D D+ + P K L ++ P
Sbjct: 111 ERAGLNIALVPKTD-----------YPDYAITPENFAQTIEETKKRGEVVLALITYPDGN 159
Query: 58 LGKVFTREELEVIAK 72
G + +++ +
Sbjct: 160 YGNLPDVKKIAKVCS 174
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 27.6 bits (62), Expect = 0.23
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
++ + +E+ S +TK I+ + LG +F E+ +A
Sbjct: 146 VNASLIEAAVSDKTKAIM---IAHTLGNLFDLAEVRRVAD 182
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 27.9 bits (63), Expect = 0.24
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 31 FKLDPAELESKFSSRTKLII 50
+ LDP LE+ + RTK II
Sbjct: 109 YNLDPQLLEAAITPRTKAII 128
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 27.9 bits (63), Expect = 0.24
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
G V ++ L + D ++ S +TKL+ + N LG V
Sbjct: 140 AKTGAVLKFVQLDE-------------QESFDLEHFKTLLSEKTKLVTVVHISNTLGCVN 186
Query: 63 TREELEVIAK 72
EE+ +A
Sbjct: 187 PAEEIAQLAH 196
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars,
antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces
venezuelae} PDB: 2oge_A*
Length = 399
Score = 27.5 bits (62), Expect = 0.27
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 31 FKLDPAELESKFSSRTKLII 50
LDP +E + RT+ ++
Sbjct: 137 PTLDPLLVEKAITPRTRALL 156
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 27.4 bits (62), Expect = 0.27
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
G IPL D L L + F +T+L+ + N LG
Sbjct: 135 ARVGAELRVIPLNP-------------DGTLQLETLPTLFDEKTRLLAITHVSNVLGTEN 181
Query: 63 TREELEVIAK 72
E+ +A
Sbjct: 182 PLAEMITLAH 191
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET:
TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Length = 373
Score = 27.5 bits (62), Expect = 0.29
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 30 DFKLDPAELESKFSSRTKLII 50
+ +DP+ +ES + +TK II
Sbjct: 109 TYNIDPSLIESAITEKTKAII 129
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 27.6 bits (62), Expect = 0.30
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 33 LDPAELESKFSSRTKLIIL 51
+D L+ + TK I+
Sbjct: 116 IDIESLKEAVTDSTKAILT 134
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin,
aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus
circulans} PDB: 2c7t_A*
Length = 418
Score = 27.3 bits (61), Expect = 0.31
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 31 FKLDPAELESKFSSRTKLII 50
+ +DP ++S + +TK II
Sbjct: 116 YCIDPQLIKSAITDKTKAII 135
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate,
gamma-elimination, direct sulfhydrylation, CY
metabolism, protein thiocarboxylate, TR; 2.20A
{Wolinella succinogenes}
Length = 430
Score = 27.5 bits (62), Expect = 0.32
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D +E TKL+ L T NP +V E L +
Sbjct: 156 DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVH 194
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 27.1 bits (61), Expect = 0.44
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 15/53 (28%)
Query: 11 YIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPH--NPLGKV 61
+ P+ T + A L + +T+L+IL+ H G+V
Sbjct: 131 FFPVAAT-----------LNQGDAAAVLANHLGPKTRLVILS--HLLWNTGQV 170
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase);
rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A
{Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Length = 388
Score = 26.8 bits (60), Expect = 0.55
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 33 LDPAELESKFSSRTKLII 50
LDP + + + RTK+I+
Sbjct: 114 LDPEAVAAAVTPRTKVIM 131
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 26.8 bits (60), Expect = 0.58
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 29 ADFKLDPAELESKFSSRTKLII 50
LDP ++ + + RT ++
Sbjct: 122 DTGNLDPDQVAAAVTPRTSAVV 143
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 26.1 bits (58), Expect = 1.0
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPL-GKVFTREELEVIAK 72
+ E++ ++L P + G ELE I++
Sbjct: 125 MTLDEIK--ALPDIACLLLELPQREIGGVAPAFSELETISR 163
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative;
2.30A {Listeria innocua}
Length = 254
Score = 26.1 bits (58), Expect = 1.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 3 EAAGGVPIYIPLQDTSPAE 21
+ GG PI +P+ D S A
Sbjct: 38 QKVGGFPIALPIDDPSTAV 56
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 25.9 bits (57), Expect = 1.2
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 28 SADFKLDPAELESKFSSRTKLIILNTPH----NPLGKVFTREELEVIAK 72
+ +D + + S TK+I + P + +E+ K
Sbjct: 148 TEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVK 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 1.5
Identities = 5/18 (27%), Positives = 11/18 (61%), Gaps = 4/18 (22%)
Query: 3 EAAGGVPIYIPLQDTSPA 20
+A+ + +Y D++PA
Sbjct: 26 QAS--LKLYAD--DSAPA 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 1.7
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 8 VP--IYIP---LQDT---SPAEPGRHKSSADFKLDPAELESKF 42
VP + LQ+ EP ++ D PAEL KF
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 25.3 bits (56), Expect = 1.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKV 61
L + ES S T+L+ +N+ LG V
Sbjct: 153 LPTWQWESLISKSTRLVAVNSASGTLGGV 181
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine
sulfhydrase, structural genomic structural
genomics/proteomics initiative; HET: PLP; 2.60A {Thermus
thermophilus} SCOP: c.67.1.3
Length = 421
Score = 25.2 bits (56), Expect = 1.8
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 29 ADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
+ P E + +T+ + + NP + E L A+
Sbjct: 128 TSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAR 171
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 25.4 bits (56), Expect = 1.9
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPL-GKVFTREELEVIAK 72
L +++S +++ P + G++ EELE I++
Sbjct: 126 LTIDDIKSLRE-PVSSVLIELPQREIGGQLPAFEELEKISE 165
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A
{Mycobacterium tuberculosis}
Length = 384
Score = 25.3 bits (54), Expect = 2.0
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 23 GRHK-SSADFKLDPAELESKFS 43
+H S AD+ L ++ +F+
Sbjct: 361 PKHSYSLADYGLTVEMVKERFA 382
>2k4j_A Putative transcriptional regulator; response regulator, acid
resistance, DN binding, phosphoprotein, transcription
regul; NMR {Helicobacter pylori}
Length = 115
Score = 24.5 bits (54), Expect = 2.7
Identities = 5/12 (41%), Positives = 7/12 (58%), Gaps = 1/12 (8%)
Query: 56 NPLGKVFTREEL 67
G VF+RE +
Sbjct: 56 KK-GYVFSRESI 66
>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal
helix, structural genomics protein structure
initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa}
SCOP: d.129.3.7
Length = 157
Score = 24.5 bits (53), Expect = 2.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 48 LIILNTPHNPLGKVFTREEL 67
L+ +N V R +L
Sbjct: 6 LVQVNDRTLVDLPVLDRLQL 25
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A
{Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB:
3nns_A*
Length = 220
Score = 24.7 bits (55), Expect = 2.8
Identities = 8/12 (66%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
Query: 56 NPLGKVFTREEL 67
N GKV TRE+L
Sbjct: 160 NA-GKVVTREKL 170
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 24.9 bits (54), Expect = 2.9
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 28 SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
AD++ D A + + T ++ + P P G V + + IA
Sbjct: 222 DADYRADVAAMREAITPNTVVVAGSAPGYPHGVV---DPIPEIAA 263
>2oqr_A Sensory transduction protein REGX3; response regulator,
winged-helix-turn-helix, DNA-binding, 3D swapping, two
component system; 2.03A {Mycobacterium tuberculosis
H37RV}
Length = 230
Score = 24.8 bits (55), Expect = 3.0
Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 56 NPLGKVFTREEL 67
N G+V TR +L
Sbjct: 171 NS-GRVLTRGQL 181
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn-
helix motif, DNA-binding domain, phosphorylation,
transcription; 1.87A {Staphylococcus aureus} PDB:
2zxj_A 2d1v_A
Length = 120
Score = 24.1 bits (53), Expect = 3.7
Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 56 NPLGKVFTREEL 67
+ G+V TRE L
Sbjct: 51 HM-GQVMTREHL 61
>2hwv_A DNA-binding response regulator VICR; essential response
regulator, C-terminal domain, DNA-binding
transcription; 1.90A {Enterococcus faecalis}
Length = 121
Score = 24.1 bits (53), Expect = 4.1
Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 56 NPLGKVFTREEL 67
+ G+V TRE L
Sbjct: 58 HI-GQVMTREHL 68
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory
system, transcription regulation, phosphorylation, OMPR
family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Length = 238
Score = 24.0 bits (53), Expect = 4.4
Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 56 NPLGKVFTREEL 67
P +VFTR+ L
Sbjct: 168 KP-RQVFTRDVL 178
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 23.6 bits (51), Expect = 7.8
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 28 SADFKLDPAELESKFSSRTKLIILNTPHNP 57
D K + E+E + +++ +
Sbjct: 157 KEDGKPNLEEIEKVLKEDESITLVHIQRST 186
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 23.3 bits (51), Expect = 8.8
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 24 RHKSSADFKLDPAELESKFSSRTKLIIL 51
R + D ++ A++ ++
Sbjct: 114 REPKAPDLNIESADVSLDDVREADILWF 141
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged
helix, osmoregulation; 1.95A {Escherichia coli} SCOP:
a.4.6.1 PDB: 1odd_A 2jpb_A
Length = 110
Score = 22.9 bits (50), Expect = 9.5
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 18 SPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPH----------NPLGKVFTREEL 67
+P++ + FKL+ E + + L T +P + +R++L
Sbjct: 1 APSQEEAVIAFGKFKLNLGTRE--MFREDEPMPL-TSGEFAVLKALVSHP-REPLSRDKL 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.368
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,048,034
Number of extensions: 46443
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 116
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.3 bits)