RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy790
(72 letters)
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 59.1 bits (142), Expect = 7e-13
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
AGG P+ +P + +F+L+ EL+ + +T+ +I+N+P NP G
Sbjct: 126 AVILAGGKPVEVPTYE-----------EDEFRLNVDELKKYVTDKTRALIINSPCNPTGA 174
Query: 61 VFTREELEVIAK 72
V T+++LE IA
Sbjct: 175 VLTKKDLEEIAD 186
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 49.8 bits (118), Expect = 1e-09
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
M AGGV + + P DP + + RTK +++N+P+NP G
Sbjct: 131 MVRFAGGVVVEVETLPEEGFVP-----------DPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61 VFTREELEVIAK 72
V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 47.8 bits (113), Expect = 7e-09
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
+ + A + + + ++ +P+NP G + R +
Sbjct: 181 VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL--RHAVIKGC 220
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 45.2 bits (106), Expect = 6e-08
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 9 PIYIPLQDTSPAEPGRHKSSAD--FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREE 66
Y + + P ++ + FK+ P ++ + +TKL++ NTP NP G V+T +E
Sbjct: 125 VSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDE 184
Query: 67 LEVI 70
+ I
Sbjct: 185 VRAI 188
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus
thermophilus [TaxId: 274]}
Length = 368
Score = 37.8 bits (86), Expect = 3e-05
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
D + LE + RT+ ++LNTP NP G VF ELE IA+
Sbjct: 141 DLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIAR 179
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 33.8 bits (76), Expect = 7e-04
Identities = 9/71 (12%), Positives = 16/71 (22%), Gaps = 8/71 (11%)
Query: 1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
+ G D + +++ HNP G
Sbjct: 133 IMNFMGLPVQTYRYFDAETRGVDFE--------GMKADLAAAKKGDMVLLHGCCHNPTGA 184
Query: 61 VFTREELEVIA 71
T ++ IA
Sbjct: 185 NLTLDQWAEIA 195
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 30.3 bits (67), Expect = 0.011
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREEL 67
+D ELE+ T L+ + +N +G V +
Sbjct: 131 IDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAI 165
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 29.9 bits (66), Expect = 0.016
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 37 ELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
+ ++ HNP G T E+ + IA
Sbjct: 175 SDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIA 209
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 28.4 bits (62), Expect = 0.063
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
GG P+ + D++ D ++ K + RTK I + P+NP G ++ +
Sbjct: 137 YGGKPVEYRTIEEE-----------DWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDK 185
Query: 65 EELEVI 70
+ LE I
Sbjct: 186 KTLEEI 191
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
maritima [TaxId: 2336]}
Length = 375
Score = 27.7 bits (60), Expect = 0.099
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 39 ESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
E +TK +++N+P+NP G V+ RE LE + +
Sbjct: 155 EGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVR 188
>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga
maritima [TaxId: 2336]}
Length = 389
Score = 25.9 bits (55), Expect = 0.38
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 38 LESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
LES + RTK I+L+ P NP G V+ ++E+ + +
Sbjct: 152 LESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVE 186
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 24.2 bits (52), Expect = 1.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 39 ESKFSSRTKLIILNTPHNPLGKVFTREELE 68
E F+ R++L + N P + T EE+
Sbjct: 2 EKTFTQRSRLFVGNLPPD-----ITEEEMR 26
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 23.8 bits (50), Expect = 2.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 33 LDPAELESKFSSRTKLIIL 51
+ P +E+ + +TK II
Sbjct: 107 VTPEHIEAAITPQTKAIIP 125
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 23.1 bits (49), Expect = 3.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 34 DPAELESKFSSRTKLIILNTPHNPLGKVFT 63
P E+ + TK++ + TP NP +
Sbjct: 137 KPEEIRAAMRPETKVVYIETPANPTLSLVD 166
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 151
Score = 22.8 bits (49), Expect = 4.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 48 LIILNTPHNPLGKVFTREEL 67
L+ +N V R +L
Sbjct: 6 LVQVNDRTLVDLPVLDRLQL 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.368
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,035
Number of extensions: 8794
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 15
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.3 bits)