BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7900
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 18  GAAVINIAVTFPINKIIFRQQLHGVGVLKAMSQVHA-------EGIPYLYRGILPPLLQK 70
           GA  + +A    + K+ F+ Q    G  +  S V A       EGI  L++G  P + + 
Sbjct: 115 GALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 174

Query: 71  SISTSLMFGMYD--KSNLFLLPYLSDHPILMKFTSAMFAG-SIEAMLTPFERLQTLLQDS 127
           +I        YD  K  L     ++D  +   FTSA  AG     + +P + ++T   +S
Sbjct: 175 AIVNCAELVTYDLIKDTLLKANLMTDD-LPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS 233

Query: 128 AYHTQLNNTPHLVKHIYKEYGMKEYYRGLSPVLLRNGPSNVVFFIARDEV 177
           A   Q ++  H    + ++ G + +Y+G  P  LR G  NVV F+  +++
Sbjct: 234 ALG-QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282



 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 94/246 (38%), Gaps = 43/246 (17%)

Query: 12  EFICGFGAAVINIAVTFPINKIIFRQQLHG--------------VGVLKA-MSQVHAEGI 56
           +F+    AA I   +TFP++    R Q+ G               GVL   ++ V  EG 
Sbjct: 4   KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63

Query: 57  PYLYRGILPPLLQKSISTSLMFGMYDKSNLFLLPYLSDHPILMKFTSAMFAGSIE-AMLT 115
             LY G++  L ++    S+  G+YD    F         I  +  +    G++  A+  
Sbjct: 64  RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQ 123

Query: 116 PFERLQTLLQDSAYH---TQLNNTPHLVKHIYKEYGMKEYYRGLSPVLLRNGPSNVVFFI 172
           P + ++   Q  A      +  +T    K I +E G++  ++G SP + RN   N    +
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183

Query: 173 ARDEVMIRFPTESNKDRMYKV----------FIKDFLIGAVIGAINSSVFFPFNVIKI-H 221
             D +         KD + K           F   F  G     I S    P +V+K  +
Sbjct: 184 TYDLI---------KDTLLKANLMTDDLPCHFTSAFGAGFCTTVIAS----PVDVVKTRY 230

Query: 222 MQSKLG 227
           M S LG
Sbjct: 231 MNSALG 236


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 194 FIKDFLIGAVIGAINSSVFFPFNVIKIHMQ 223
           F+KDFL G V  AI+ +   P   +K+ +Q
Sbjct: 7   FLKDFLAGGVAAAISKTAVAPIERVKLLLQ 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,232,182
Number of Sequences: 62578
Number of extensions: 317978
Number of successful extensions: 593
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 3
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)