Query psy7900
Match_columns 293
No_of_seqs 176 out of 1903
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 21:45:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.9E-56 1.3E-60 387.3 17.7 269 11-282 3-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.5E-54 8.5E-59 375.0 20.0 266 6-277 4-296 (297)
3 2lck_A Mitochondrial uncouplin 100.0 6.8E-35 2.3E-39 253.4 19.7 179 6-185 101-290 (303)
4 1okc_A ADP, ATP carrier protei 100.0 6.4E-34 2.2E-38 246.6 18.7 170 9-180 112-296 (297)
5 3vjj_A P9-1; 3.00A {Rice black 32.1 22 0.00075 29.2 2.1 76 207-290 274-349 (368)
6 3tgu_G UQCRQ, mitochondrial ub 17.3 1.5E+02 0.0053 19.3 3.6 39 53-91 31-69 (81)
7 2khf_A PLNJ; anti-microbial, b 12.4 67 0.0023 15.3 0.6 19 230-248 3-22 (26)
8 2acm_A Mucin-1; auto-catalytic 12.0 36 0.0012 20.8 -0.5 19 135-153 41-59 (66)
9 1bts_A BAND 3 anion transport 10.4 2E+02 0.0068 14.2 2.7 19 99-117 5-25 (26)
10 1pp9_G Ubiquinol-cytochrome C 8.8 3.1E+02 0.01 17.8 3.1 38 53-90 31-68 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.9e-56 Score=387.33 Aligned_cols=269 Identities=20% Similarity=0.233 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCCC--------------CHHHHHHHH-HHcCHHhhhcCchHHHHHHHHHHh
Q psy7900 11 EEFICGFGAAVINIAVTFPINKIIFRQQLHGV--------------GVLKAMSQV-HAEGIPYLYRGILPPLLQKSISTS 75 (293)
Q Consensus 11 ~~~~~g~~ag~~~~~i~~Pld~ik~~~q~~~~--------------~~~~~~~~~-~~~G~~gly~G~~~~~~~~~~~~~ 75 (293)
.++++|++||+++.+++||+|+||+|+|++.. +..++++.+ ++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 57899999999999999999999999998742 567777775 999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHhh-chHHHHHHHHHhccC---CCCCCCHHHHHHHHHHhhCccc
Q psy7900 76 LMFGMYDKSNLFLLPYLSDHPILMKFTSAMFAGSIEAML-TPFERLQTLLQDSAY---HTQLNNTPHLVKHIYKEYGMKE 151 (293)
Q Consensus 76 ~~f~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~-~Pl~~ik~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~g 151 (293)
++|.+||.+|+.+.+..+..+....+++|++||+++.++ +|+|+||+|+|++.. ..+|+++++++++|+++||++|
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 999999999999876533567788999999999999999 999999999999863 3578999999999999999999
Q ss_pred cccchhhhHhhhhhhhHHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHHHHHHhHHhhcchHHHHHHHHHccCCCCCc
Q psy7900 152 YYRGLSPVLLRNGPSNVVFFIARDEVMIRFPTESNKDRMYKVFIKDFLIGAVIGAINSSVFFPFNVIKIHMQSKLGGSYD 231 (293)
Q Consensus 152 ly~G~~~~~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~it~Pldvvrtr~q~~~~~~~~ 231 (293)
||||+.+++++.+|+.+++|.+||.+|+.+.+..+ ...+....+++|++||++++++++|+||||+|||.+....|+
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~ 239 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH 239 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCC
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999876542 234567789999999999999999999999999999777899
Q ss_pred hHHHhhhhhhcccchhhhhcccCcccCCCccccccceeeeccccccCCCcc
Q psy7900 232 SLWQDQGGQEEGSGLNVVTSTGGGTHPGGGPFDDHLFGVFGNTGTMTEDSL 282 (293)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 282 (293)
++++|+++++++||+++||+|+.+.+.+..|.+++.|..||.++..+.+..
T Consensus 240 ~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp SHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998887643
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.5e-54 Score=375.04 Aligned_cols=266 Identities=16% Similarity=0.225 Sum_probs=231.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccHHHHHHHHhcCC-----------CCHHHHHHHH-HHcCHHhhhcCchHHHHHHHHH
Q psy7900 6 SCKNYEEFICGFGAAVINIAVTFPINKIIFRQQLHG-----------VGVLKAMSQV-HAEGIPYLYRGILPPLLQKSIS 73 (293)
Q Consensus 6 ~~~~~~~~~~g~~ag~~~~~i~~Pld~ik~~~q~~~-----------~~~~~~~~~~-~~~G~~gly~G~~~~~~~~~~~ 73 (293)
+.+.+.++++|++||+++.++++|+|+||+|+|++. .+..++++.+ ++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 346778999999999999999999999999999874 2577777775 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHhh-ccCCCC----chhHHHHHHHHHHHHHHHhh-chHHHHHHHHHhccC----CCCCCCHHHHHHHH
Q psy7900 74 TSLMFGMYDKSNLFL-LPYLSD----HPILMKFTSAMFAGSIEAML-TPFERLQTLLQDSAY----HTQLNNTPHLVKHI 143 (293)
Q Consensus 74 ~~~~f~~~~~~~~~~-~~~~~~----~~~~~~~~ag~~ag~~~~~~-~Pl~~ik~r~q~~~~----~~~~~~~~~~~~~i 143 (293)
.+++|.+||.+|+.+ .+...+ ......+++|++||+++.++ +|+|+||+|+|++.. ..+|+++++++++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 999999999999954 322222 13467899999999999999 999999999999753 35689999999999
Q ss_pred HHhhCccccccchhhhHhhhhhhhHHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHHHHHHhHHhhcchHHHHHHHHH
Q psy7900 144 YKEYGMKEYYRGLSPVLLRNGPSNVVFFIARDEVMIRFPTESNKDRMYKVFIKDFLIGAVIGAINSSVFFPFNVIKIHMQ 223 (293)
Q Consensus 144 ~~~~G~~gly~G~~~~~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~it~Pldvvrtr~q 223 (293)
+++||++|||||+.+++++.+|+.+++|.+||.+++.+.+.. ..+....+++|++||++++++++|+||||+|||
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 999999999999999999999999999999999999876433 245677889999999999999999999999999
Q ss_pred ccCC-----CCCchHHHhhhhhhcccchhhhhcccCcccCCCccccccceeeecccccc
Q psy7900 224 SKLG-----GSYDSLWQDQGGQEEGSGLNVVTSTGGGTHPGGGPFDDHLFGVFGNTGTM 277 (293)
Q Consensus 224 ~~~~-----~~~~~~~~~~~~~~~~~G~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 277 (293)
.+.. ..|+++++|+++++++||+++||+|+.+.+.+. +.++++|.+||.++.+
T Consensus 239 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9753 269999999999999999999999999988885 4578999999988754
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.8e-35 Score=253.39 Aligned_cols=179 Identities=23% Similarity=0.351 Sum_probs=162.5
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccHHHHHHHHhcCC--------CCHHHHHHHH-HHcCHHhhhcCchHHHHHHHHHHhH
Q psy7900 6 SCKNYEEFICGFGAAVINIAVTFPINKIIFRQQLHG--------VGVLKAMSQV-HAEGIPYLYRGILPPLLQKSISTSL 76 (293)
Q Consensus 6 ~~~~~~~~~~g~~ag~~~~~i~~Pld~ik~~~q~~~--------~~~~~~~~~~-~~~G~~gly~G~~~~~~~~~~~~~~ 76 (293)
+.+....+++|++||+++.++++|+|+||+|+|++. .+..++++.+ ++||++|||||+.+++++.++..++
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 180 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHH
Confidence 356788999999999999999999999999999875 2677888776 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCC-CCchhHHHHHHHHHHHHHHHhh-chHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhCcccccc
Q psy7900 77 MFGMYDKSNLFLLPYL-SDHPILMKFTSAMFAGSIEAML-TPFERLQTLLQDSAYHTQLNNTPHLVKHIYKEYGMKEYYR 154 (293)
Q Consensus 77 ~f~~~~~~~~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~-~Pl~~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~ 154 (293)
+|.+||.+|+.+.+.. ...+....+++|++||+++.++ +|+|+||+|+|++.. ..|+++++++++|+++||++||||
T Consensus 181 ~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyr 259 (303)
T 2lck_A 181 ELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYK 259 (303)
T ss_dssp HHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHS
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhc
Confidence 9999999999887653 3456678899999999999999 999999999999764 469999999999999999999999
Q ss_pred chhhhHhhhhhhhHHHHHHHHHHHHhcCCCC
Q psy7900 155 GLSPVLLRNGPSNVVFFIARDEVMIRFPTES 185 (293)
Q Consensus 155 G~~~~~~~~~~~~~~~f~~y~~~~~~~~~~~ 185 (293)
|+.|+++|.+|..+++|.+||.+|+.+.+..
T Consensus 260 G~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 260 GFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999886543
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.4e-34 Score=246.62 Aligned_cols=170 Identities=17% Similarity=0.280 Sum_probs=150.0
Q ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHhcCC---------CCHHHHHHHH-HHcCHHhhhcCchHHHHHHHHHHhHHH
Q psy7900 9 NYEEFICGFGAAVINIAVTFPINKIIFRQQLHG---------VGVLKAMSQV-HAEGIPYLYRGILPPLLQKSISTSLMF 78 (293)
Q Consensus 9 ~~~~~~~g~~ag~~~~~i~~Pld~ik~~~q~~~---------~~~~~~~~~~-~~~G~~gly~G~~~~~~~~~~~~~~~f 78 (293)
....+++|++||+++.++++|+|+||+|+|++. .+..++++.+ ++||++|||||+.+++++.++..+++|
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 191 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999874 2577787775 999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHhh-chHHHHHHHHHhccC----CCCCCCHHHHHHHHHHhhCccccc
Q psy7900 79 GMYDKSNLFLLPYLSDHPILMKFTSAMFAGSIEAML-TPFERLQTLLQDSAY----HTQLNNTPHLVKHIYKEYGMKEYY 153 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~-~Pl~~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly 153 (293)
.+||.+|+.+.+.. +.+....+++|++||+++.++ +|+|+||+|+|++.. ...|+++++++++|+++||++|||
T Consensus 192 ~~ye~~k~~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly 270 (297)
T 1okc_A 192 GVYDTAKGMLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF 270 (297)
T ss_dssp HHHHHHHHSSCGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEe
Confidence 99999999876442 345677899999999999999 999999999998753 246999999999999999999999
Q ss_pred cchhhhHhhhhhhhHHHHHHHHHHHHh
Q psy7900 154 RGLSPVLLRNGPSNVVFFIARDEVMIR 180 (293)
Q Consensus 154 ~G~~~~~~~~~~~~~~~f~~y~~~~~~ 180 (293)
||+.|+++|. +..+++|.+||.+|+.
T Consensus 271 rG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 271 KGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp TTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred cchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999995 5789999999998865
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=32.13 E-value=22 Score=29.20 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred hHHhhcchHHHHHHHHHccCCCCCchHHHhhhhhhcccchhhhhcccCcccCCCccccccceeeeccccccCCCccccCC
Q psy7900 207 INSSVFFPFNVIKIHMQSKLGGSYDSLWQDQGGQEEGSGLNVVTSTGGGTHPGGGPFDDHLFGVFGNTGTMTEDSLVRDE 286 (293)
Q Consensus 207 ~~~~it~Pldvvrtr~q~~~~~~~~~~~~~~~~~~~~~G~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 286 (293)
.+++=-||||.+|-.++..- +....+++.++++|+ |...-.-.++| .|...+.+.-..+-..|+.-+-.++-
T Consensus 274 LaTFdnypfdllRfqL~Sli-----stp~~I~e~i~K~GL--Fk~it~~~~rg-~~~q~vl~rgingsesfln~kryr~f 345 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLI-----STPALIREKIAKEGL--FKIITSNTLRG-ASRQTVLFRGINGSESFLNIKRYRKF 345 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCC-----CCCHHHHHHHHHSCS--EEECC-----------CEEEECSSSCEEECCCEEECCC
T ss_pred eecCCCCCHHHHHHHhhhhc-----cChHHHHHHHHhcCc--eEEEecccccC-CccceEEEeccCChhhhccHHHhhhh
Confidence 45666799999988655542 344666676777773 33322222333 24455556666666777776555544
Q ss_pred CCcC
Q psy7900 287 DNRD 290 (293)
Q Consensus 287 ~~~~ 290 (293)
..|.
T Consensus 346 r~r~ 349 (368)
T 3vjj_A 346 KTRI 349 (368)
T ss_dssp CCSS
T ss_pred hhee
Confidence 4443
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.26 E-value=1.5e+02 Score=19.27 Aligned_cols=39 Identities=8% Similarity=0.148 Sum_probs=31.5
Q ss_pred HcCHHhhhcCchHHHHHHHHHHhHHHHHHHHHHHhhccC
Q psy7900 53 AEGIPYLYRGILPPLLQKSISTSLMFGMYDKSNLFLLPY 91 (293)
Q Consensus 53 ~~G~~gly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 91 (293)
.+|+.-.+|-+...++..+|..++.+.+|++.++.-...
T Consensus 31 ~~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 31 SDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888899999999999999999987765443
No 7
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=12.41 E-value=67 Score=15.30 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=11.5
Q ss_pred CchHHHhhhh-hhcccchhh
Q psy7900 230 YDSLWQDQGG-QEEGSGLNV 248 (293)
Q Consensus 230 ~~~~~~~~~~-~~~~~G~~~ 248 (293)
+++++..+|+ .|.+|.-+.
T Consensus 3 wknfwsslrkgfydgeagra 22 (26)
T 2khf_A 3 WKNFWSSLRKGFYDGEAGRA 22 (26)
T ss_dssp HHHHHHHHHHHHTTTHHHHT
T ss_pred HHHHHHHHHhhcccchhhhH
Confidence 4566766665 666665443
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=12.04 E-value=36 Score=20.76 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHhhCccccc
Q psy7900 135 NTPHLVKHIYKEYGMKEYY 153 (293)
Q Consensus 135 ~~~~~~~~i~~~~G~~gly 153 (293)
++.+.+.+||+++++.||+
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5677888999999988876
No 9
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=10.43 E-value=2e+02 Score=14.22 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhh--chH
Q psy7900 99 MKFTSAMFAGSIEAML--TPF 117 (293)
Q Consensus 99 ~~~~ag~~ag~~~~~~--~Pl 117 (293)
..+++.+++|++-+++ .|+
T Consensus 5 E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 5 ELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 4566777888777766 665
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=8.79 E-value=3.1e+02 Score=17.80 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.9
Q ss_pred HcCHHhhhcCchHHHHHHHHHHhHHHHHHHHHHHhhcc
Q psy7900 53 AEGIPYLYRGILPPLLQKSISTSLMFGMYDKSNLFLLP 90 (293)
Q Consensus 53 ~~G~~gly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 90 (293)
.+|+.-.+|-+...++..+|..++.+.+|++.++....
T Consensus 31 ~~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 31 SKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 35566677777778888888888888999988776543
Done!