RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7900
(293 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 64.6 bits (158), Expect = 2e-13
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 93 SDHPILMKFTSAMFAGSIEAMLT-PFERLQTLLQDSA--YHTQLNNTPHLVKHIYKEYGM 149
S L + AG+I A +T P + ++T LQ SA + K IYKE G+
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 150 KEYYRGLSPVLLRNGPSNVVFFIARDEVMIRFPTES 185
+ Y+GL P LLR P+ ++F + + +
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 48.4 bits (116), Expect = 1e-07
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 5 SSCKNYEEFICGFGAAVINIAVTFPINKIIFRQQLHGV-------GVLKAMSQ-VHAEGI 56
S + G A I VT+P++ + R Q G+L + EGI
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 57 PYLYRGILPPLLQKSISTSLMFGMYDKSNLFLLPYL 92
LY+G+LP LL+ + + ++ FG Y+ LL L
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 38.8 bits (91), Expect = 4e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 194 FIKDFLIGAVIGAINSSVFFPFNVIKIHMQSKLGGS---YDSLWQ 235
F+ L G + GAI ++V +P +V+K +QS G Y +
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILD 49
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 39.4 bits (92), Expect = 0.001
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 97 ILMKFTSAMFAGSIEAMLT-----PFERLQTLLQ--DSAYHTQLNNTPHL------VKHI 143
F + G I A ++ P ER++ L+Q DS + P + +
Sbjct: 3 KKTNFATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRV 62
Query: 144 YKEYGMKEYYRGLSPVLLRNGPSNVVFFIARDEVMIRFPTESNKDRMYKVFIKDFLIGAV 203
KE G+ +RG + ++R P+ F +D FP + K +K F + L G +
Sbjct: 63 SKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNILSGGL 122
Query: 204 IGAINSSVFFPFNVIKIHMQSKLGGSYDSLWQDQGGQEEGSGL 246
GA + + +P + + + S +G +GG E +GL
Sbjct: 123 AGASSLLIVYPLDFARTRLASDIG---------KGGDREFTGL 156
>gnl|CDD|222941 PHA02901, PHA02901, virus redox protein; Provisional.
Length = 75
Score = 29.3 bits (66), Expect = 0.54
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 158 PVLLRNGPSNVVFFIARDEVMIRFPTESNKDRMYKVFIKDFLI 200
P N+V ++ D IR ES + +K FL
Sbjct: 14 PKRCSKCSDNLVEYLKEDRETIRAILESQPYKKK--ILKQFLA 54
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 29.9 bits (67), Expect = 1.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 195 IKDFLIGAVIGAINSSVFFPFNVIKIHMQSK 225
+ + GA+ G I +V +P + IK ++Q+K
Sbjct: 4 FHNLVTGALSGVIVDAVLYPIDSIKTNIQAK 34
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 29.2 bits (66), Expect = 2.1
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 15 CGFGAAVINIAVTFPINKIIFRQQLHGVGVLKAMSQVHAEGIP 57
G G ++ +A P K ++ GV KA+ ++ G+
Sbjct: 57 FGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK 98
>gnl|CDD|239627 cd03571, ENTH_epsin, ENTH domain, Epsin family; The epsin (Eps15
interactor) N-terminal homology (ENTH) domain is an
evolutionarily conserved protein module found primarily
in proteins that participate in clathrin-mediated
endocytosis. A set of proteins previously designated as
harboring an ENTH domain in fact contains a highly
similar, yet unique module referred to as an AP180
N-terminal homology (ANTH) domain. ENTH and ANTH
(E/ANTH) domains are structurally similar to the VHS
domain and are composed of a superhelix of eight alpha
helices. E/ANTH domains bind both inositol phospholipids
and proteins and contribute to the nucleation and
formation of clathrin coats on membranes. ENTH domains
also function in the development of membrane curvature
through lipid remodeling during the formation of
clathrin-coated vesicles. E/ANTH-bearing proteins have
recently been shown to function with adaptor protein-1
and GGA adaptors at the trans-Golgi network, which
suggests that E/ANTH domains are universal components of
the machinery for clathrin-mediated membrane budding.
Length = 123
Score = 28.3 bits (64), Expect = 2.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 130 HTQLNNTPHLVKHIYKEYGMKEYYRGLSPVLLRNGPSNVVFFIARDEVMIR 180
+LN+ +H+YK + EY LL+NG VV + +IR
Sbjct: 43 WKRLNDKGKNWRHVYKALTLLEY-------LLKNGSERVVDDARENLYIIR 86
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 29.4 bits (66), Expect = 2.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 250 TSTGGGTHPGGGPFDDHLFGVFGNTGTMTE 279
+ GGG GGG D G+F G T+
Sbjct: 106 GAQGGGGAGGGGGLGDVFGGLFNRGGRRTQ 135
>gnl|CDD|223063 PHA03374, PHA03374, hypothetical protein; Provisional.
Length = 730
Score = 29.6 bits (67), Expect = 2.5
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 21 VINIAVTFPINKIIFRQQLHGVGVLKAMSQVHAEGIPYLYRGILPPLLQKSISTSLMF 78
+I + I L V L+ ++ E P LL +I S MF
Sbjct: 91 IITGDGIYTFANIDTDTYLPVVYSLE-LTDPPLEPSGLRALLYFPALLTTTIDYSSMF 147
>gnl|CDD|129723 TIGR00637, ModE_repress, ModE molybdate transport repressor domain.
ModE is a molybdate-activated repressor of the
molybdate transport operon in E. coli. It consists of
the domain represented by This model and two tandem
copies of mop-like domain, where Mop proteins are a
family of 68-residue molybdenum-pterin binding proteins
of Clostridium pasteurianum. This model also represents
the full length of a pair of archaeal proteins that lack
Mop-like domains. PSI-BLAST analysis shows similarity to
helix-turn-helix regulatory proteins [Regulatory
functions, Other].
Length = 99
Score = 27.4 bits (61), Expect = 3.1
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 225 KLGGSYDSLWQDQGGQEEGSGLNVVTSTGGGTHPGG 260
G SY S W SG +V GG GG
Sbjct: 25 DAGISYKSAWDYIRAMNNLSGEPLVERATGGKGGGG 60
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-terminal homology)
domain is found in proteins involved in endocytosis and
cytoskeletal machinery. The function of the ENTH domain
is unknown.
Length = 124
Score = 27.5 bits (62), Expect = 3.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 130 HTQLNNTPHLVKHIYKEYGMKEYYRGLSPVLLRNGPSNVVFFIARDEVMIRF 181
+LN++ +H+YK + EY LL+NG VV + +IR
Sbjct: 45 WKRLNDSGKNWRHVYKALTLLEY-------LLKNGSERVVDDLREHIYIIRT 89
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 28.5 bits (64), Expect = 3.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 227 GGSYD-SLWQDQGGQEEGSGLNVVTSTGGGTHPGGGPFDDHL 267
GG++D S+ + Q G E V ST G T GG FD+ L
Sbjct: 196 GGTFDISILEIQKGVFE------VKSTNGDTFLGGEDFDNAL 231
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 28.4 bits (64), Expect = 5.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 227 GGSYD-SLWQDQGGQEEGSGLNVVTSTGGGTHPGGGPFDDHL 267
GG++D S+ + G E V +T G TH GG FD+ L
Sbjct: 195 GGTFDVSILEIGDGVFE------VLATNGDTHLGGEDFDNRL 230
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 28.5 bits (64), Expect = 5.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 241 EEGSGLNVVTSTGGGTHPGGGPFDDHL 267
E G G+ V ST G TH GG FD +
Sbjct: 205 EVGDGVFEVLSTSGDTHLGGDDFDKKI 231
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 28.3 bits (63), Expect = 6.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 241 EEGSGLNVVTSTGGGTHPGGGPFD 264
E G G+ V ST G TH GG FD
Sbjct: 242 EVGDGVFEVLSTSGDTHLGGDDFD 265
>gnl|CDD|185334 PRK15437, PRK15437, histidine ABC transporter substrate-binding
protein HisJ; Provisional.
Length = 259
Score = 27.7 bits (61), Expect = 6.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 227 GGSYDSLWQDQGGQEEGSGLNVVTSTGGGTHPGGGPF--DDHLFGVFGNTGTMTEDSLVR 284
G D+ +QD+ EG + G + GGP D+ LFGV G ED+ +R
Sbjct: 174 AGRIDAAFQDEVAASEG----FLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELR 229
Query: 285 DEDNR 289
+ N+
Sbjct: 230 EALNK 234
>gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein;
Provisional.
Length = 166
Score = 27.5 bits (61), Expect = 7.0
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 234 WQDQGGQEEGS------GLNVVTSTGGGTHPGGGP---FDDHLFGVFGNTG 275
W DQ G E S G N + G GGG DD G FG++G
Sbjct: 89 WTDQSGVERYSTEVVLQGFNSTLTMLDGRGEGGGGGGGGDDGGGGDFGSSG 139
>gnl|CDD|112625 pfam03821, Mtp, Golgi 4-transmembrane spanning transporter.
Length = 233
Score = 27.3 bits (60), Expect = 8.9
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 72 ISTSLMFGMYDKSNLFLLPYLSDHPILMKFTSAMFAGSIEAML 114
IS SL+ G+ +L P+LS + + GS +
Sbjct: 49 ISYSLLIGVVKNREKYLSPFLSLQIMDVLLCLLTLLGSYIELP 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.415
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,346,928
Number of extensions: 1502979
Number of successful extensions: 1335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1329
Number of HSP's successfully gapped: 28
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)