RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7900
         (293 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 27/235 (11%)

Query: 11  EEFICGFGAAVINIAVTFPINKIIFRQQLHGV-----------GVLKAMSQVHAEGIPYL 59
           ++F+ G  AA I+     PI ++    Q+              G++  + ++  E     
Sbjct: 8   KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 67

Query: 60  YRGILPPLLQKSISTSLMFGMY-DKSNLFLLPYLSDHP-----ILMKFTSAMFAGSIEAM 113
           +       + +   T  +   + DK     L  +  H            S   AG+    
Sbjct: 68  FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 127

Query: 114 LTPF-----ERLQTLLQDSAYHTQLNNTPHLVKHIYKEYGMKEYYRGLSPVLLRNGPSNV 168
                     RL   +   A   +     + +  I+K  G++  Y+G +  +        
Sbjct: 128 FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRA 187

Query: 169 VFFIARDEVMIRFPTESNKDRMYKVFIKDFLIGAVIGAINSSVFFPFNVIKIHMQ 223
            +F      +         D      I  ++I   + A+   V +PF+ ++  M 
Sbjct: 188 AYFG-----VYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 237



 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 14/175 (8%)

Query: 12  EFICGFGAAVINIAVTFPINKIIFRQQLHGVG----------VLKAMSQVHAEGIPYLYR 61
               G  A   ++   +P++    R                          ++G+  LY+
Sbjct: 114 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 173

Query: 62  GILPPLLQKSISTSLMFGMYDKSNLFLLPYLSDHPILMKFTSAMFAGSIEAMLTPFERLQ 121
           G    +    I  +  FG+YD +   L    + H I+    +         +  PF+ ++
Sbjct: 174 GFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 233

Query: 122 TLLQ----DSAYHTQLNNTPHLVKHIYKEYGMKEYYRGLSPVLLRNGPSNVVFFI 172
             +               T    + I K+ G K +++G    +LR      V  +
Sbjct: 234 RRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL 288



 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 194 FIKDFLIGAVIGAINSSVFFPFNVIKIHMQSKLGGSYDS 232
           F+KDFL G V  AI+ +   P   +K+ +Q +      S
Sbjct: 6   FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQIS 44



 Score = 35.5 bits (80), Expect = 0.006
 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 43  GVLKAMSQV-HAEGIPYLYRGILPPLLQKSISTSLMFGMYDK 83
           G +    ++   EG    ++G    +L + +  + +  +YD+
Sbjct: 251 GTVDCWRKIAKDEGPKAFFKGAWSNVL-RGMGGAFVLVLYDE 291


>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
           {Chloroflexus aurantiacus [TaxId: 1108]}
          Length = 346

 Score = 28.8 bits (64), Expect = 0.83
 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 119 RLQTLLQDSAYHTQLNNTPHLVKHIYKEYGMKEYYRGLSPVLLRNGPSNVVFFIARDEVM 178
           RL   L +  +  +    P +  +  +   +++ +  +S  +L +G S V   +   + +
Sbjct: 162 RLWITLHEMTHAFEFEAYPWVRTYFREL--LEQNFALVSGQMLSSGNSLVDMLMRLLQGI 219


>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 295

 Score = 26.8 bits (58), Expect = 3.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 105 MFAGSIEAMLTPFE 118
           MF G   A++TPF+
Sbjct: 2   MFRGVGTAIVTPFK 15


>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 292

 Score = 26.0 bits (56), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 105 MFAGSIEAMLTPF 117
           MF GSI A++TP 
Sbjct: 1   MFTGSIVAIVTPM 13


>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 126

 Score = 24.9 bits (54), Expect = 8.2
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 15/81 (18%)

Query: 166 SNVVFFI-----ARDEVMIRFPTESNKDRMYKVFIKDFLIGAVIGAINSSVFFPFNVIKI 220
           SNV+  +     AR+++ I +    N+    K+   D         +  +  F       
Sbjct: 15  SNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFL------ 68

Query: 221 HMQSKLGGSYDSLWQDQGGQE 241
               +   +  +LW+D G Q 
Sbjct: 69  ----QYLPAIRALWEDSGIQN 85


>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus
           [TaxId: 155077]}
          Length = 364

 Score = 25.6 bits (55), Expect = 8.7
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 184 ESNKDRMYKVFIKDFLIGAVIGAINSSVFFPFNVIK 219
            +N D +  +   DF IG    A++++    +N++ 
Sbjct: 3   SANVDHLRDLAPSDFPIGV---AVSNTDSATYNLLT 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,101,519
Number of extensions: 51063
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 12
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)